Query 025243
Match_columns 255
No_of_seqs 117 out of 374
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 8E-85 1.7E-89 561.5 17.5 211 30-255 1-212 (212)
2 COG5196 ERD2 ER lumen protein 100.0 1.1E-70 2.4E-75 467.0 17.7 211 31-255 2-214 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 1.1E-55 2.5E-60 370.6 13.2 144 57-201 1-147 (147)
4 TIGR00951 2A43 Lysosomal Cysti 96.3 0.41 8.9E-06 42.8 16.9 138 40-179 14-171 (220)
5 KOG3211 Predicted endoplasmic 95.2 0.32 7E-06 43.7 11.1 173 48-241 49-224 (230)
6 PF04193 PQ-loop: PQ loop repe 93.9 0.31 6.7E-06 34.2 6.7 54 147-200 2-55 (61)
7 PF04193 PQ-loop: PQ loop repe 93.6 0.16 3.4E-06 35.8 4.6 47 32-78 4-50 (61)
8 PHA02246 hypothetical protein 88.3 12 0.00027 32.4 11.7 155 47-233 22-179 (192)
9 smart00679 CTNS Repeated motif 86.5 0.57 1.2E-05 28.8 2.0 23 48-70 6-28 (32)
10 KOG1623 Multitransmembrane pro 71.7 37 0.0008 31.2 9.5 181 33-233 6-204 (243)
11 smart00679 CTNS Repeated motif 62.6 6.9 0.00015 23.8 2.1 26 160-185 1-26 (32)
12 TIGR00951 2A43 Lysosomal Cysti 61.3 1.2E+02 0.0026 27.0 10.6 56 31-86 137-195 (220)
13 COG4095 Uncharacterized conser 45.6 1.1E+02 0.0025 23.9 6.7 39 36-74 11-49 (89)
14 COG4095 Uncharacterized conser 39.6 1.3E+02 0.0028 23.7 6.1 49 152-200 10-58 (89)
15 KOG2489 Transmembrane protein 36.9 13 0.00028 37.7 0.3 54 123-176 440-498 (592)
16 COG4330 Predicted membrane pro 36.2 3.3E+02 0.007 24.6 9.1 89 4-108 47-150 (211)
17 PF02790 COX2_TM: Cytochrome C 25.5 57 0.0012 23.8 2.1 43 97-139 37-80 (84)
18 PRK09731 putative general secr 25.5 86 0.0019 27.5 3.5 26 2-27 31-56 (178)
19 COG3149 PulM Type II secretory 24.5 91 0.002 27.4 3.4 34 2-35 30-63 (181)
20 PF10215 Ost4: Oligosaccaryltr 24.4 1.2E+02 0.0026 19.7 3.2 20 10-29 11-30 (35)
21 PF04612 T2SM: Type II secreti 23.7 26 0.00057 28.8 0.0 27 2-28 10-36 (160)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-85 Score=561.54 Aligned_cols=211 Identities=42% Similarity=0.760 Sum_probs=204.2
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhhee-echhHHHHHHHHHHHHHHHHHHhhhc
Q 025243 30 HDYFFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSII-MEADIHTVLDFATLASTAWVIYMIRF 108 (255)
Q Consensus 30 ~~~~~llgdl~hl~s~~iLl~KI~~~kS~~GiSlkTQ~Ly~lVf~~R~~~~~~-~~y~~~~i~k~~~l~~s~~iiyli~~ 108 (255)
+|.||++||++|++|+++|++||+|+|||+|+|+|||+|||+||++||+|+|. .++++|++||+++++++.+++|+|++
T Consensus 1 mn~fr~~gd~~H~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~ 80 (212)
T KOG3106|consen 1 MNNFRFAGDLSHLAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRF 80 (212)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999987 56678999999999999999999999
Q ss_pred cCcccchhccccccchhhhhhHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcccccchHHHHHHHHHH
Q 025243 109 KLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGV 188 (255)
Q Consensus 109 ~yk~TY~~~~Dtf~~~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~ 188 (255)
|+|+|||+|+|||+++|+++||+++|+++||+.+ +.|++||||+|||||||||||+|+||+||+|++|+||+||||+
T Consensus 81 k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~t---~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~ 157 (212)
T KOG3106|consen 81 KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSFT---ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGL 157 (212)
T ss_pred HHHHHHhcccCceeEEEEehhheeeeeeecCCcc---HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHH
Confidence 9999999999999999999999999999999854 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccchhHHHHHHHHHHHHHhhhhhhhhHhhhcCCccccCCC
Q 025243 189 ARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLLMRMPI 255 (255)
Q Consensus 189 yR~ly~~~Wi~ry~~~~~~~~~~~g~g~~~~~~~ii~givQt~ly~DF~y~Y~k~v~~G~~~~~Lp~ 255 (255)
||++|++|||+|+.+|+ +|+++++++|+|||++||||||+|++++++|+| .+||+
T Consensus 158 yR~ly~~~WI~r~~~e~-----------~~~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~-~~LP~ 212 (212)
T KOG3106|consen 158 YRALYIANWIYRYVTED-----------FWDPIAIVAGIVQTVLYADFFYLYVTKVLQGKK-LKLPA 212 (212)
T ss_pred HHHHHHHHHHHHHHhhc-----------cccchHHHHHHHHHHHHHhHHHHHHHHHHcCCc-CCCCC
Confidence 99999999999999875 689999999999999999999999999999999 89995
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-70 Score=467.05 Aligned_cols=211 Identities=34% Similarity=0.567 Sum_probs=196.5
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhheeech--hHHHHHHHHHHHHHHHHHHhhhc
Q 025243 31 DYFFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEA--DIHTVLDFATLASTAWVIYMIRF 108 (255)
Q Consensus 31 ~~~~llgdl~hl~s~~iLl~KI~~~kS~~GiSlkTQ~Ly~lVf~~R~~~~~~~~y--~~~~i~k~~~l~~s~~iiyli~~ 108 (255)
|.||.+||++|++|+.+|+.||.|+|||+|+|+|||.||++||++||+|.+...+ -+|.+||++++++++|++++|++
T Consensus 2 ~~Fr~lGD~~Hlasi~vLih~ik~tr~csGlSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~~ 81 (214)
T COG5196 2 DTFRFLGDFLHLASIAVLIHKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMRF 81 (214)
T ss_pred cHHHHHhHHHHHHHHHHHHHHhhhcceecceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999998773322 24799999999999999999999
Q ss_pred cCcccchhccccccchhhhhhHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcccccchHHHHHHHHHH
Q 025243 109 KLKSTYIKELDNFPIYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGV 188 (255)
Q Consensus 109 ~yk~TY~~~~Dtf~~~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~ 188 (255)
+++.||||..|||+++++++||++++++++++ +.+.+++||||+|||||||||||+|+||.||-|++|+||++++|+
T Consensus 82 ~~r~tYdk~lDtF~i~~ll~gsav~slff~~~---~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgL 158 (214)
T COG5196 82 KYRSTYDKKLDTFNILTLLVGSAVFSLFFTRG---GTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGL 158 (214)
T ss_pred cccchHHHhhhhhhhhhhhhhhhhheeeecCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHH
Confidence 99999999999999999999999999999876 559999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCccchhHHHHHHHHHHHHHhhhhhhhhHhhhcCCccccCCC
Q 025243 189 ARFLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYIKSLKEGQLLMRMPI 255 (255)
Q Consensus 189 yR~ly~~~Wi~ry~~~~~~~~~~~g~g~~~~~~~ii~givQt~ly~DF~y~Y~k~v~~G~~~~~Lp~ 255 (255)
||++|++|||+|+..+.++ -+-+++.+|++||++|.|||+.|.|.|.+|++ ++||+
T Consensus 159 YRalYip~wI~r~~~~~kk----------~~~iai~aGivQTlLY~DFf~iYyr~V~rGk~-f~LP~ 214 (214)
T COG5196 159 YRALYIPYWILRKVYDIKK----------TGNIAIAAGIVQTLLYLDFFAIYYRYVFRGKS-FSLPS 214 (214)
T ss_pred HHHhhhhHHHHHhhhcccc----------cccchhHHHHHHHHHHHHhHHhhhhhhhcccc-cCCCC
Confidence 9999999999999665332 12467999999999999999999999999999 89996
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=1.1e-55 Score=370.59 Aligned_cols=144 Identities=44% Similarity=0.724 Sum_probs=136.7
Q ss_pred ccccccchhhHHHHHHHHhhhhhheeec-h--hHHHHHHHHHHHHHHHHHHhhhccCcccchhccccccchhhhhhHHHH
Q 025243 57 TCSGLSLKTQELTAMFLALRLVCSIIME-A--DIHTVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIAVPSAIL 133 (255)
Q Consensus 57 S~~GiSlkTQ~Ly~lVf~~R~~~~~~~~-y--~~~~i~k~~~l~~s~~iiyli~~~yk~TY~~~~Dtf~~~~liiP~~vL 133 (255)
||+|+|+|||+||++|+++||+|+...+ | .+|++||++++++|++++|+|+.|||+|||+|+|+|+..++++||++|
T Consensus 1 S~~GlSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~~~~~Ty~~~~D~f~~~~li~p~~vL 80 (147)
T PF00810_consen 1 SCSGLSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFFKYKSTYDKEIDTFRLEYLIVPCFVL 80 (147)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhheeehhhhhccccchhhhHHHHHHHHH
Confidence 8999999999999999999999983322 2 257999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 025243 134 AFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQL 201 (255)
Q Consensus 134 ali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~Wi~ry 201 (255)
|+++|| .+++.+.|++||||+|||||||+|||+|+||+||+|++|+||+++||+||++|++|||+||
T Consensus 81 a~i~~p-~~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 81 ALIFHP-LNSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHHHhc-cccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999 7788999999999999999999999999999999999999999999999999999999996
No 4
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.34 E-value=0.41 Score=42.82 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhh-------hhhhe-eechh---HHHHHHHHH-----HHHHHHHH
Q 025243 40 IHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALR-------LVCSI-IMEAD---IHTVLDFAT-----LASTAWVI 103 (255)
Q Consensus 40 ~hl~s~~iLl~KI~~~kS~~GiSlkTQ~Ly~lVf~~R-------~~~~~-~~~y~---~~~i~k~~~-----l~~s~~ii 103 (255)
....++.-=+.|++|+||++|+|+..-.+-.+.+++- +++.. ..+|. +....|-+. ++.++.++
T Consensus 14 ~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~~ 93 (220)
T TIGR00951 14 AWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIVL 93 (220)
T ss_pred HHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 3556677778999999999999999987655544433 22211 11121 111112222 22233232
Q ss_pred HhhhccCcccchhcccccc----chhhhhhHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcccccchH
Q 025243 104 YMIRFKLKSTYIKELDNFP----IYYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFT 179 (255)
Q Consensus 104 yli~~~yk~TY~~~~Dtf~----~~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lT 179 (255)
+... ++.+..++.-.... ...+.+.+..+..+..+ ...-.+.+.++...+-+--++-+||..+-.|.|..+.+.
T Consensus 94 ~q~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glS 171 (220)
T TIGR00951 94 HQCG-DYERGWQRVSNPWILRILVALLACFATLLVALLSP-ITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLS 171 (220)
T ss_pred HHHh-hccccccccchhHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCC
Confidence 3221 22111111111111 01222222233333332 233456777777888888889999999999886555443
No 5
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.16 E-value=0.32 Score=43.71 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=100.3
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHhhhhhheeechhHHHHHHHHHHHHHHHHHHhhhccCcccchhccccccchhhh
Q 025243 48 LIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEADIHTVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPIYYIA 127 (255)
Q Consensus 48 Ll~KI~~~kS~~GiSlkTQ~Ly~lVf~~R~~~~~~~~y~~~~i~k~~~l~~s~~iiyli~~~yk~TY~~~~Dtf~~~~li 127 (255)
=+.||..+||+.|+|+.+|+|=.+-++.-+--++.+-|+-.+.+|..++..+..++-++.+.|+-. ....|.+--.+.+
T Consensus 49 QI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~gE~~fLl~Q~vili~~if~f~~~-~~~~v~~l~~~~~ 127 (230)
T KOG3211|consen 49 QIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSYGEYPFLLLQAVILILCIFHFSGQ-TVTVVQFLGYIAL 127 (230)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhHHHHHHHHHHHHHHHHHHHHhccc-eeehhhHHHHHHH
Confidence 468999999999999999998777665332112222233346789999999998888888877711 1122333333333
Q ss_pred hhHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025243 128 VPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNA---KMIEPFTSHYVFALGVARFLSFAHWILQLIET 204 (255)
Q Consensus 128 iP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~---g~ve~lTshYv~~LG~yR~ly~~~Wi~ry~~~ 204 (255)
++....+.. . ..++.+..=+-.+-.-.++=+||..-..|+ |...-+|..--+.=.+.|.++-+ .|+
T Consensus 128 v~~~~~sk~----~-p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsi------q~t 196 (230)
T KOG3211|consen 128 VVSVLASKA----L-PLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSI------QET 196 (230)
T ss_pred HHHHHHHhh----h-hHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHH------Hhc
Confidence 332222211 1 122233333333333457789999988876 56666776666666677765432 333
Q ss_pred ccccccccCCCccchhHHHHHHHHHHHHHhhhhhhhh
Q 025243 205 RGRYLFLLGHGYLWFPVAFLAEMIQTFILADFCYYYI 241 (255)
Q Consensus 205 ~~~~~~~~g~g~~~~~~~ii~givQt~ly~DF~y~Y~ 241 (255)
+ ++.+++ + -+++-..+-.+.+.++.|+=
T Consensus 197 ~--d~~mll-~------~v~s~~~Ng~i~aq~l~Y~s 224 (230)
T KOG3211|consen 197 G--DFLMLL-R------FVISLALNGLITAQVLRYWS 224 (230)
T ss_pred C--ChhhHH-H------HHHHHHHhHHHHHHHHHHHh
Confidence 2 222221 1 14566677777777776653
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=93.93 E-value=0.31 Score=34.22 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHhhhhhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHH
Q 025243 147 SGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQ 200 (255)
Q Consensus 147 ~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~Wi~r 200 (255)
.+++...+..+++++-+||+....|++.+|.+.--++.......++.+++.+..
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~ 55 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS 55 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999999999999999998888888887765
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=93.56 E-value=0.16 Score=35.78 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=37.7
Q ss_pred hHHHHhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhh
Q 025243 32 YFFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLV 78 (255)
Q Consensus 32 ~~~llgdl~hl~s~~iLl~KI~~~kS~~GiSlkTQ~Ly~lVf~~R~~ 78 (255)
.+-..+-..-+++.+-=++|.+|+||+.|+|..+..+..+..+++..
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~ 50 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVL 50 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 33445566667777778899999999999999999988888777754
No 8
>PHA02246 hypothetical protein
Probab=88.28 E-value=12 Score=32.42 Aligned_cols=155 Identities=13% Similarity=0.185 Sum_probs=81.8
Q ss_pred HHHHHHhhccccccccchhhHHHHHHHHhhh--hhheeech-hHHHHHHHHHHHHHHHHHHhhhccCcccchhccccccc
Q 025243 47 VLIYKLTTKNTCSGLSLKTQELTAMFLALRL--VCSIIMEA-DIHTVLDFATLASTAWVIYMIRFKLKSTYIKELDNFPI 123 (255)
Q Consensus 47 iLl~KI~~~kS~~GiSlkTQ~Ly~lVf~~R~--~~~~~~~y-~~~~i~k~~~l~~s~~iiyli~~~yk~TY~~~~Dtf~~ 123 (255)
--+..+.++||..|+|- -.-|.+++..-. .+....+. +| ++..+ -+-...-++.+.-..| |++|-|..
T Consensus 22 pgL~slvk~~nv~GvS~--~FWYLi~~tvgiSfyNlL~T~~~~f-qi~sv-g~nl~lgivcLlv~~~-----rkkd~f~~ 92 (192)
T PHA02246 22 PGLVALVKAESVKGVSN--YFWYLIVATVGISFYNLLLTDASVF-QIVSV-GLNLTLGIVCLLVASY-----RKKDYFSI 92 (192)
T ss_pred hhHHHHhhhcccccHHH--HHHHHHHHHHHHHHHHHHhcCCceE-EEeee-ehhhhhhhhheeeehh-----hccccccc
Confidence 34567889999999983 456667665442 11111000 00 11000 0011111222222222 34577766
Q ss_pred hhhhhhHHHHHHHhCCCCCcchhhhHHHHHHHHHHHhhhhhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025243 124 YYIAVPSAILAFIVHPSNRLINLSGILWAFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQLIE 203 (255)
Q Consensus 124 ~~liiP~~vLali~~~~~~~~~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~Wi~ry~~ 203 (255)
.+.++-++.+-++- + ..|+.-+.+.----.|-.||...+.|++..|....-.-..+|..-++-..+-... .
T Consensus 93 ~fiiifSLllfll~----~---~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lt--h 163 (192)
T PHA02246 93 PFIIVFSLLLFLLS----D---FTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLT--H 163 (192)
T ss_pred hHHHHHHHHHHHHh----h---hHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhh--C
Confidence 66666554443331 1 3455555444444568899999999999999877666555666544444443321 1
Q ss_pred hccccccccCCCccchhHHHHHHHHHHHHH
Q 025243 204 TRGRYLFLLGHGYLWFPVAFLAEMIQTFIL 233 (255)
Q Consensus 204 ~~~~~~~~~g~g~~~~~~~ii~givQt~ly 233 (255)
. ....+++|+++..+.
T Consensus 164 v--------------~~hIiiTEf~N~iLi 179 (192)
T PHA02246 164 T--------------YVHIIATEFVNFVLI 179 (192)
T ss_pred C--------------cceeeHHHHHHHHHH
Confidence 1 112378999888764
No 9
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=86.53 E-value=0.57 Score=28.80 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=19.0
Q ss_pred HHHHHhhccccccccchhhHHHH
Q 025243 48 LIYKLTTKNTCSGLSLKTQELTA 70 (255)
Q Consensus 48 Ll~KI~~~kS~~GiSlkTQ~Ly~ 70 (255)
=++|++|+||+.|+|.-...+..
T Consensus 6 Qi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 6 QIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred HHHHHHHcCCcCcCCHHHHHHHH
Confidence 36899999999999998876544
No 10
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=71.69 E-value=37 Score=31.20 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=86.5
Q ss_pred HHHHhhHHHHHHHH------HHHHHHhhccccccccchhhHHHHHH--HHhhhhhheeech---hHHHHHHHHHHHHHHH
Q 025243 33 FFVASEAIHAAGIM------VLIYKLTTKNTCSGLSLKTQELTAMF--LALRLVCSIIMEA---DIHTVLDFATLASTAW 101 (255)
Q Consensus 33 ~~llgdl~hl~s~~------iLl~KI~~~kS~~GiSlkTQ~Ly~lV--f~~R~~~~~~~~y---~~~~i~k~~~l~~s~~ 101 (255)
..++|.+....+++ ....+|+|+||.+|.|.-=-++-.+. +..||-..-..++ ..|.+ .+.+.
T Consensus 6 ~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~------G~~ie 79 (243)
T KOG1623|consen 6 LFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGI------GLVIE 79 (243)
T ss_pred HHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehh------cHHHH
Confidence 34566666666654 45689999999999987654433332 2344421111111 01211 22233
Q ss_pred HHHhhhccCcccchhccccc-cchhhh-hhHHHHHHHhCCCCCc-c-hhhhHHHH--HHHHHHHhhhhhHHHHHHhcccc
Q 025243 102 VIYMIRFKLKSTYIKELDNF-PIYYIA-VPSAILAFIVHPSNRL-I-NLSGILWA--FCVYVESVSVLPQLRLMQNAKMI 175 (255)
Q Consensus 102 iiyli~~~yk~TY~~~~Dtf-~~~~li-iP~~vLali~~~~~~~-~-~~~eilWt--FSiyLEsVAILPQL~mlqk~g~v 175 (255)
++|.+.+-|....+|..+-. ...... +-..+.+....++.++ . ..--+|=. -+.|.-.++.++ +-=|++.+
T Consensus 80 ~~Yi~~f~~ya~~k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~---~VIktkSv 156 (243)
T KOG1623|consen 80 TVYISIFLYYAPKKKTVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIR---KVIKTKSV 156 (243)
T ss_pred HHHHHHHheecCchheeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhh---hheecCce
Confidence 34444443333333311111 111111 1122223333333222 2 12233333 445556666666 44466888
Q ss_pred cchHHHHHHHHHHHHHHHHHHH-HHHHHhhccccccccCCCccchhHHHHHHHHHHHHH
Q 025243 176 EPFTSHYVFALGVARFLSFAHW-ILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFIL 233 (255)
Q Consensus 176 e~lTshYv~~LG~yR~ly~~~W-i~ry~~~~~~~~~~~g~g~~~~~~~ii~givQt~ly 233 (255)
|.+---- -+.-++...-| +|...- ++.. -++. +.+..+.|++|..+|
T Consensus 157 E~mPf~L----s~a~fl~a~~W~lYGlli-~D~~-Iaip-----N~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 157 EYMPFPL----SFALFLVAVQWLLYGLLI-KDFF-IAIP-----NVLGFLLGLIQLILY 204 (243)
T ss_pred eeechHH----HHHHHHHHHHHHHHHHHh-cCeE-EEcc-----cHHHHHHHHHHHHHh
Confidence 8775333 33456667778 555443 2211 1111 124588999999999
No 11
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=62.59 E-value=6.9 Score=23.79 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHhcccccchHHHHHHH
Q 025243 160 VSVLPQLRLMQNAKMIEPFTSHYVFA 185 (255)
Q Consensus 160 VAILPQL~mlqk~g~ve~lTshYv~~ 185 (255)
++-+||.....|++.++.+..-+++.
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence 46799999999999999887666553
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=61.29 E-value=1.2e+02 Score=27.02 Aligned_cols=56 Identities=18% Similarity=0.017 Sum_probs=39.9
Q ss_pred hhHHHHhhHHHHH---HHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhheeechh
Q 025243 31 DYFFVASEAIHAA---GIMVLIYKLTTKNTCSGLSLKTQELTAMFLALRLVCSIIMEAD 86 (255)
Q Consensus 31 ~~~~llgdl~hl~---s~~iLl~KI~~~kS~~GiSlkTQ~Ly~lVf~~R~~~~~~~~y~ 86 (255)
|+...++-.-... +.+.=++.-+|+||..|+|..|..|-..-.+.|.+|......|
T Consensus 137 ~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd 195 (220)
T TIGR00951 137 AFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGD 195 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444444433333 4444567889999999999999999999999999887643333
No 13
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=45.64 E-value=1.1e+02 Score=23.93 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=31.5
Q ss_pred HhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Q 025243 36 ASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQELTAMFLA 74 (255)
Q Consensus 36 lgdl~hl~s~~iLl~KI~~~kS~~GiSlkTQ~Ly~lVf~ 74 (255)
.|...-.++++.=+.|+.|+||.+++|+-+-....+..+
T Consensus 11 ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~ 49 (89)
T COG4095 11 IAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALF 49 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 566777888889999999999999999988765555443
No 14
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=39.62 E-value=1.3e+02 Score=23.68 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHH
Q 025243 152 AFCVYVESVSVLPQLRLMQNAKMIEPFTSHYVFALGVARFLSFAHWILQ 200 (255)
Q Consensus 152 tFSiyLEsVAILPQL~mlqk~g~ve~lTshYv~~LG~yR~ly~~~Wi~r 200 (255)
+.+--+-.+|.+||+...-|+++..+++--....+-.++.+-+++=+..
T Consensus 10 ~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi 58 (89)
T COG4095 10 TIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILI 58 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566789999999999999999988888888888887766654443
No 15
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=36.91 E-value=13 Score=37.72 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=30.5
Q ss_pred chhhhhhHHH----HHHHhCCCCCcc-hhhhHHHHHHHHHHHhhhhhHHHHHHhccccc
Q 025243 123 IYYIAVPSAI----LAFIVHPSNRLI-NLSGILWAFCVYVESVSVLPQLRLMQNAKMIE 176 (255)
Q Consensus 123 ~~~liiP~~v----Lali~~~~~~~~-~~~eilWtFSiyLEsVAILPQL~mlqk~g~ve 176 (255)
..|++.|..+ -+++-.|..+++ +.++.+..+=.----+-++|||+.-.|=+.|-
T Consensus 440 Ls~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVA 498 (592)
T KOG2489|consen 440 LSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVA 498 (592)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhh
Confidence 4577777433 344444433332 34454444333333456899999999877654
No 16
>COG4330 Predicted membrane protein [Function unknown]
Probab=36.22 E-value=3.3e+02 Score=24.57 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=50.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhccchhHHHHhhHHHHHHHHHHHHHHhhccccccccchhhH------HHHHHHHhhh
Q 025243 4 PTKVKSCLAVVFTVCSLVAMKLFVKNHDYFFVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQE------LTAMFLALRL 77 (255)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~llgdl~hl~s~~iLl~KI~~~kS~~GiSlkTQ~------Ly~lVf~~R~ 77 (255)
+.|.--+-+.+++|+++++ .|-.-++.|++|+.-.. ++-- -.|+.+-+ +...|+..-|
T Consensus 47 s~rrs~l~w~~~lvf~~Fl-------PNAPYlLTDlIHL~k~~-------~~~~--~~~l~~~~~~~ft~L~l~v~~~~y 110 (211)
T COG4330 47 SWRRSWLFWPLFLVFLLFL-------PNAPYLLTDLIHLQKLE-------RYGA--ELSLIILLWRPFTYLFLGVFFGLY 110 (211)
T ss_pred ccccChHHHHHHHHHHHHc-------CCChHHHHHHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444577778887777643 78899999999984321 1110 01221111 1112222222
Q ss_pred hhhee-ec--------hhHHHHHHHHHHHHHHHHHHhhhc
Q 025243 78 VCSII-ME--------ADIHTVLDFATLASTAWVIYMIRF 108 (255)
Q Consensus 78 ~~~~~-~~--------y~~~~i~k~~~l~~s~~iiyli~~ 108 (255)
.-+.. .. .+|-..+++.....+++-||.-|+
T Consensus 111 V~sll~~~~~~~~~~r~~Wi~~i~v~~~~L~a~GIYiGRF 150 (211)
T COG4330 111 VMSLLNAGYLLERRRRSNWIFLIEVGLHLLCAFGIYIGRF 150 (211)
T ss_pred HHHHHHhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 21211 11 136688888899999999998877
No 17
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=25.52 E-value=57 Score=23.81 Aligned_cols=43 Identities=21% Similarity=0.491 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhc-cCcccchhccccccchhhhhhHHHHHHHhCC
Q 025243 97 ASTAWVIYMIRF-KLKSTYIKELDNFPIYYIAVPSAILAFIVHP 139 (255)
Q Consensus 97 ~~s~~iiyli~~-~yk~TY~~~~Dtf~~~~liiP~~vLali~~~ 139 (255)
......++.+.. +..+.+..+.++.-....++|++++..+.-|
T Consensus 37 ~V~~~l~~~~~~~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 37 FVFYFLIYFLFNSKFPNKFFNHNNKLEIIWTIIPAIILLFLAFP 80 (84)
T ss_dssp HHHHHHHHHHHHSSSS--S---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeeecccccccccccccccccchhhhhhhhHHHHHHHHHHHhh
Confidence 333444444443 3333322223333344677887777666544
No 18
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=25.50 E-value=86 Score=27.46 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhh
Q 025243 2 RQPTKVKSCLAVVFTVCSLVAMKLFV 27 (255)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (255)
..|+|++-+++++.++.++.++|...
T Consensus 31 ~ls~REq~ll~~~g~vL~l~i~Y~~i 56 (178)
T PRK09731 31 GRSPREKGMLLAAVVFLFSVGYYVLI 56 (178)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 19
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=24.46 E-value=91 Score=27.45 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=28.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 025243 2 RQPTKVKSCLAVVFTVCSLVAMKLFVKNHDYFFV 35 (255)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l 35 (255)
-++||+|.+|.-.++..++++.|..+-+.-.=|+
T Consensus 30 ~~~PREr~mL~g~Ga~L~Lvi~Y~~~WqP~~eri 63 (181)
T COG3149 30 GLPPRERKMLLGGGAFLLLVILYLLIWQPLSERI 63 (181)
T ss_pred cCChHHHHHHHHhhHHHHHHHHHHHHhccHHHHH
Confidence 4789999999999999999999988877765554
No 20
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=24.35 E-value=1.2e+02 Score=19.71 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 025243 10 CLAVVFTVCSLVAMKLFVKN 29 (255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~d 29 (255)
......+.|+++++||+.+-
T Consensus 11 an~lG~~~~~LIVlYH~v~~ 30 (35)
T PF10215_consen 11 ANFLGVAAMVLIVLYHFVEV 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34556678889999998753
No 21
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=23.66 E-value=26 Score=28.78 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhc
Q 025243 2 RQPTKVKSCLAVVFTVCSLVAMKLFVK 28 (255)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (255)
+.|+|+|.++.+++++.+++++|.+.-
T Consensus 10 ~ls~REr~ll~~~~~~l~~~l~~~~~~ 36 (160)
T PF04612_consen 10 SLSPRERRLLLVLGVVLLLALLYLLLW 36 (160)
T ss_dssp ---------------------------
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988888887553
Done!