Query 025243
Match_columns 255
No_of_seqs 117 out of 374
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 51.6 7.4 0.00025 31.3 2.2 27 34-67 49-75 (130)
2 2lat_A Dolichyl-diphosphooligo 18.8 1.1E+02 0.0038 19.3 3.1 18 11-28 12-29 (37)
3 1rkl_A Dolichyl-diphosphooligo 17.8 1.3E+02 0.0044 18.9 3.2 19 11-29 12-30 (36)
4 3u5c_R RP51A, 40S ribosomal pr 14.2 1.2E+02 0.004 24.5 2.9 27 34-67 49-75 (136)
5 1v54_B Cytochrome C oxidase po 10.8 1.5E+02 0.0051 25.4 2.8 14 124-137 64-77 (227)
6 3j1r_A Archaeal adhesion filam 10.2 2.9E+02 0.01 16.0 3.4 25 4-28 2-26 (26)
7 2k37_A Chlorosome protein A; b 9.0 1.2E+02 0.004 21.1 1.1 11 151-161 27-37 (59)
8 3iz6_Q 40S ribosomal protein S 8.7 1.4E+02 0.0049 24.1 1.7 27 34-67 49-75 (141)
9 2fm8_C Cell invasion protein S 7.5 1.4E+02 0.0047 25.8 1.2 13 155-167 220-232 (240)
10 2fm9_A Cell invasion protein S 7.2 1.2E+02 0.0042 25.8 0.7 12 156-167 195-206 (215)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=51.65 E-value=7.4 Score=31.34 Aligned_cols=27 Identities=41% Similarity=0.471 Sum_probs=21.4
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccccccccchhhH
Q 025243 34 FVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQE 67 (255)
Q Consensus 34 ~llgdl~hl~s~~iLl~KI~~~kS~~GiSlkTQ~ 67 (255)
+++|...| +.|-.+...+.|||+|-|+
T Consensus 49 kIAGYVTh-------lmkriq~gpvrgis~klqE 75 (130)
T 2xzm_V 49 KIAGFATH-------LMKRIQKGPVRGISLKVQE 75 (130)
T ss_dssp HHHHHHHH-------HHHHTTTSCCTTCCCTTTT
T ss_pred cccchhhh-------HhhhcccCcccccccchhH
Confidence 46888888 3566667789999999998
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=18.82 E-value=1.1e+02 Score=19.27 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 025243 11 LAVVFTVCSLVAMKLFVK 28 (255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (255)
-....+.|+++++||+.+
T Consensus 12 n~lG~~~~~LIVlYH~v~ 29 (37)
T 2lat_A 12 NMLGVSLFLLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345567888999999865
No 3
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=17.77 E-value=1.3e+02 Score=18.86 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 025243 11 LAVVFTVCSLVAMKLFVKN 29 (255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~d 29 (255)
-....+.|+++++||+.+-
T Consensus 12 n~lG~~~~~LIvlYH~v~~ 30 (36)
T 1rkl_A 12 ITFGIVMMTLIVIYHAVDS 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455677889999998753
No 4
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=14.22 E-value=1.2e+02 Score=24.50 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=19.7
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccccccccchhhH
Q 025243 34 FVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQE 67 (255)
Q Consensus 34 ~llgdl~hl~s~~iLl~KI~~~kS~~GiSlkTQ~ 67 (255)
+++|...|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThL-------mKriq~GpvrgisiklqE 75 (136)
T 3u5c_R 49 KIAGYTTHL-------MKRIQKGPVRGISFKLQE 75 (136)
T ss_dssp HHHHHHHHH-------HHHHTTSCBTTBCCSHHH
T ss_pred ehhhhhhhh-------hcccccCCcccceeehhH
Confidence 356666664 455556678999999998
No 5
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=10.78 E-value=1.5e+02 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=7.7
Q ss_pred hhhhhhHHHHHHHh
Q 025243 124 YYIAVPSAILAFIV 137 (255)
Q Consensus 124 ~~liiP~~vLali~ 137 (255)
.+.++|++++..+.
T Consensus 64 iWTiiP~iil~~la 77 (227)
T 1v54_B 64 IWTILPAIILILIA 77 (227)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHH
Confidence 35566666555543
No 6
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=10.22 E-value=2.9e+02 Score=16.01 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhc
Q 025243 4 PTKVKSCLAVVFTVCSLVAMKLFVK 28 (255)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (255)
||-|-.+|..+.++.+-+++|..+|
T Consensus 2 spiVA~~lLIviav~aaVllylW~s 26 (26)
T 3j1r_A 2 SPVIATLLLILIAVAAAVLLYTWVS 26 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566777778888888888886553
No 7
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=9.01 E-value=1.2e+02 Score=21.11 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=9.9
Q ss_pred HHHHHHHHHhh
Q 025243 151 WAFCVYVESVS 161 (255)
Q Consensus 151 WtFSiyLEsVA 161 (255)
|++|.++|+++
T Consensus 27 ~~vg~~le~~g 37 (59)
T 2k37_A 27 ETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHTGGGT
T ss_pred HHHHHHHHHHH
Confidence 78999999986
No 8
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=8.67 E-value=1.4e+02 Score=24.12 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccccccccchhhH
Q 025243 34 FVASEAIHAAGIMVLIYKLTTKNTCSGLSLKTQE 67 (255)
Q Consensus 34 ~llgdl~hl~s~~iLl~KI~~~kS~~GiSlkTQ~ 67 (255)
+++|...|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 49 KVAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhhheeeeh-------hhccccCCccccceehhH
Confidence 456777665 455555678999999998
No 9
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=7.53 E-value=1.4e+02 Score=25.83 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.9
Q ss_pred HHHHHhhhhhHHH
Q 025243 155 VYVESVSVLPQLR 167 (255)
Q Consensus 155 iyLEsVAILPQL~ 167 (255)
==||.+|++|||.
T Consensus 220 R~Le~~AviP~LL 232 (240)
T 2fm8_C 220 RHLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 3589999999985
No 10
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=7.16 E-value=1.2e+02 Score=25.83 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=10.2
Q ss_pred HHHHhhhhhHHH
Q 025243 156 YVESVSVLPQLR 167 (255)
Q Consensus 156 yLEsVAILPQL~ 167 (255)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T 2fm9_A 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 378999999985
Done!