Query 025243
Match_columns 255
No_of_seqs 117 out of 374
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 06:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025243.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025243hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 23.7 25 0.0018 24.2 2.8 18 123-140 63-80 (90)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 19.1 1.4E+02 0.0099 20.5 6.3 7 146-152 76-82 (107)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 7.9 3E+02 0.022 18.2 6.5 13 125-137 75-87 (100)
4 d2fm9a1 a.257.1.1 (A:49-263) C 7.1 58 0.0042 25.9 0.7 12 156-167 195-206 (215)
5 d2exna1 b.165.1.1 (A:1-128) Hy 7.1 44 0.0032 24.0 -0.1 13 53-65 7-19 (128)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 6.2 2.1E+02 0.015 18.9 3.3 13 125-137 66-78 (91)
7 d1vf5c3 f.23.23.1 (C:250-286) 3.5 2.5E+02 0.018 16.1 1.7 17 4-20 3-19 (37)
8 d1jt6a2 a.121.1.1 (A:73-187) M 3.0 4.2E+02 0.031 17.9 2.9 32 191-232 80-111 (115)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 2.8 5.1E+02 0.037 14.4 2.8 18 221-238 7-24 (34)
10 d1dq3a3 d.95.2.2 (A:129-226) P 2.7 2.6E+02 0.019 18.9 1.3 13 174-186 80-92 (98)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.71 E-value=25 Score=24.17 Aligned_cols=18 Identities=33% Similarity=0.598 Sum_probs=10.7
Q ss_pred chhhhhhHHHHHHHhCCC
Q 025243 123 IYYIAVPSAILAFIVHPS 140 (255)
Q Consensus 123 ~~~liiP~~vLali~~~~ 140 (255)
....++|+++|..+--|+
T Consensus 63 iiWTiiP~lILi~ia~PS 80 (90)
T d1v54b2 63 TIWTILPAIILILIALPS 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445667766666665554
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=19.11 E-value=1.4e+02 Score=20.54 Aligned_cols=7 Identities=14% Similarity=0.752 Sum_probs=3.7
Q ss_pred hhhHHHH
Q 025243 146 LSGILWA 152 (255)
Q Consensus 146 ~~eilWt 152 (255)
.+|+.||
T Consensus 76 ~lEi~WT 82 (107)
T d3ehbb2 76 PIEVIWT 82 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555555
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.95 E-value=3e+02 Score=18.22 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=6.8
Q ss_pred hhhhhHHHHHHHh
Q 025243 125 YIAVPSAILAFIV 137 (255)
Q Consensus 125 ~liiP~~vLali~ 137 (255)
..++|++++..+.
T Consensus 75 WTviP~lILi~l~ 87 (100)
T d3dtub2 75 WTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455655554444
No 4
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.12 E-value=58 Score=25.86 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=10.1
Q ss_pred HHHHhhhhhHHH
Q 025243 156 YVESVSVLPQLR 167 (255)
Q Consensus 156 yLEsVAILPQL~ 167 (255)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 378999999985
No 5
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=7.06 E-value=44 Score=23.98 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=10.3
Q ss_pred hhccccccccchh
Q 025243 53 TTKNTCSGLSLKT 65 (255)
Q Consensus 53 ~~~kS~~GiSlkT 65 (255)
|-=|||.|+|+..
T Consensus 7 ~PIKsc~g~~~~~ 19 (128)
T d2exna1 7 QPIAECGATTQSE 19 (128)
T ss_dssp EEETTTEEECCGG
T ss_pred ecccccCCccccc
Confidence 4459999999854
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.15 E-value=2.1e+02 Score=18.91 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHHh
Q 025243 125 YIAVPSAILAFIV 137 (255)
Q Consensus 125 ~liiP~~vLali~ 137 (255)
..++|.+++..+.
T Consensus 66 WtiIP~iil~~ia 78 (91)
T d1fftb2 66 VWTVPILIIIFLA 78 (91)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4556766655543
No 7
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.47 E-value=2.5e+02 Score=16.10 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=10.7
Q ss_pred CchhHHHHHHHHHHHHH
Q 025243 4 PTKVKSCLAVVFTVCSL 20 (255)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (255)
|.|++..+..++++++.
T Consensus 3 p~Rv~gl~~F~~~v~la 19 (37)
T d1vf5c3 3 PNRVKWMIAFICLVMLA 19 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55777777666666543
No 8
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=2.99 E-value=4.2e+02 Score=17.95 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhccccccccCCCccchhHHHHHHHHHHHH
Q 025243 191 FLSFAHWILQLIETRGRYLFLLGHGYLWFPVAFLAEMIQTFI 232 (255)
Q Consensus 191 ~ly~~~Wi~ry~~~~~~~~~~~g~g~~~~~~~ii~givQt~l 232 (255)
++..+||+..++...+. -.+-.+.-..+|.++
T Consensus 80 il~~lng~~~Wy~~~g~----------~~~~~la~~~~~l~L 111 (115)
T d1jt6a2 80 AANAVNGIVTFTHEQNI----------NERIKLMNKFSQIFL 111 (115)
T ss_dssp HHHHHHHHHHSCTTSCH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCC----------CCHHHHHHHHHHHHH
Confidence 56778999988754321 233456666666654
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.78 E-value=5.1e+02 Score=14.35 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 025243 221 VAFLAEMIQTFILADFCY 238 (255)
Q Consensus 221 ~~ii~givQt~ly~DF~y 238 (255)
+..++|+.-+.+.+=|||
T Consensus 7 v~tv~G~~vi~~vG~FfY 24 (34)
T d2axtj1 7 VATVAGMGVIVIVGLFFY 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehhhhhhHhheeeeee
Confidence 556788888888888887
No 10
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.68 E-value=2.6e+02 Score=18.94 Aligned_cols=13 Identities=38% Similarity=0.465 Sum_probs=10.0
Q ss_pred cccchHHHHHHHH
Q 025243 174 MIEPFTSHYVFAL 186 (255)
Q Consensus 174 ~ve~lTshYv~~L 186 (255)
++.++||||+=.|
T Consensus 80 kar~itshy~~ll 92 (98)
T d1dq3a3 80 KARNITSHYLKLL 92 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eecccHHHHHHHH
Confidence 5678999998654
Done!