Query 025245
Match_columns 255
No_of_seqs 218 out of 1319
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880 Peptidyl-prolyl cis-tr 100.0 6.7E-58 1.4E-62 386.6 17.4 173 82-254 32-205 (217)
2 KOG0546 HSP90 co-chaperone CPR 100.0 1.9E-57 4.1E-62 413.9 14.7 167 88-254 7-181 (372)
3 KOG0879 U-snRNP-associated cyc 100.0 1.7E-50 3.6E-55 323.8 13.0 167 85-251 6-177 (177)
4 cd01926 cyclophilin_ABH_like c 100.0 9.1E-48 2E-52 323.3 19.6 159 90-249 1-164 (164)
5 PLN03149 peptidyl-prolyl isome 100.0 1.8E-47 3.8E-52 327.7 19.8 163 89-251 18-186 (186)
6 PTZ00060 cyclophilin; Provisio 100.0 1.7E-46 3.7E-51 320.9 20.1 162 89-252 15-183 (183)
7 PTZ00221 cyclophilin; Provisio 100.0 2.1E-46 4.6E-51 332.4 20.4 163 87-253 50-221 (249)
8 KOG0111 Cyclophilin-type pepti 100.0 7.1E-48 1.5E-52 330.9 10.5 166 86-252 133-298 (298)
9 KOG0881 Cyclophilin type pepti 100.0 2.1E-46 4.5E-51 297.0 9.5 158 82-251 5-163 (164)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 1.4E-44 3E-49 301.0 16.7 148 98-251 3-157 (158)
11 cd01928 Cyclophilin_PPIL3_like 100.0 7.8E-44 1.7E-48 296.4 17.7 146 100-249 6-152 (153)
12 cd01923 cyclophilin_RING cyclo 100.0 1E-43 2.2E-48 297.4 18.5 149 101-253 6-155 (159)
13 cd01927 cyclophilin_WD40 cyclo 100.0 8.4E-44 1.8E-48 294.7 17.6 144 100-247 3-147 (148)
14 cd01921 cyclophilin_RRM cyclop 100.0 4.3E-43 9.4E-48 295.5 18.3 150 100-253 3-161 (166)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 5.2E-43 1.1E-47 289.4 16.9 143 100-247 3-146 (146)
16 KOG0883 Cyclophilin type, U bo 100.0 5.2E-42 1.1E-46 313.9 13.2 159 86-251 272-431 (518)
17 cd01925 cyclophilin_CeCYP16-li 100.0 1.1E-40 2.4E-45 282.2 19.3 148 101-252 12-161 (171)
18 PRK10903 peptidyl-prolyl cis-t 100.0 1.1E-40 2.5E-45 286.5 18.6 146 101-252 35-190 (190)
19 KOG0882 Cyclophilin-related pe 100.0 8E-42 1.7E-46 317.6 11.4 156 90-249 400-556 (558)
20 PRK10791 peptidyl-prolyl cis-t 100.0 6.4E-40 1.4E-44 275.8 17.4 146 100-251 5-163 (164)
21 KOG0865 Cyclophilin type pepti 100.0 1.4E-40 3.1E-45 279.0 9.9 163 88-251 2-167 (167)
22 cd01920 cyclophilin_EcCYP_like 100.0 2.5E-39 5.5E-44 269.8 16.7 141 101-247 4-154 (155)
23 KOG0884 Similar to cyclophilin 100.0 2.8E-39 6.1E-44 255.2 11.1 146 101-250 7-154 (161)
24 PF00160 Pro_isomerase: Cyclop 100.0 3.8E-38 8.3E-43 260.9 17.5 150 93-250 1-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 8.1E-38 1.7E-42 256.7 17.2 142 101-247 4-146 (146)
26 cd01924 cyclophilin_TLP40_like 100.0 6.1E-36 1.3E-40 254.3 16.1 128 100-230 3-164 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 9.2E-36 2E-40 271.7 13.0 159 84-251 7-167 (439)
28 KOG0415 Predicted peptidyl pro 100.0 1.3E-34 2.9E-39 262.8 12.2 150 100-253 6-164 (479)
29 KOG0882 Cyclophilin-related pe 97.5 0.0001 2.3E-09 70.4 4.4 142 105-250 113-261 (558)
30 TIGR03268 methan_mark_3 putati 95.9 0.043 9.3E-07 53.5 9.1 102 105-230 202-303 (503)
31 TIGR03268 methan_mark_3 putati 95.9 0.059 1.3E-06 52.5 9.7 116 104-231 375-496 (503)
32 COG4070 Predicted peptidyl-pro 95.8 0.021 4.7E-07 54.1 6.1 103 104-230 203-305 (512)
33 PRK00969 hypothetical protein; 95.7 0.057 1.2E-06 52.7 8.8 102 105-230 205-306 (508)
34 PRK00969 hypothetical protein; 95.0 0.16 3.6E-06 49.6 9.5 114 105-231 379-498 (508)
35 COG4070 Predicted peptidyl-pro 94.3 0.2 4.4E-06 47.7 8.1 22 105-126 377-398 (512)
36 PF12903 DUF3830: Protein of u 88.1 3.3 7.2E-05 34.4 8.0 107 104-230 8-130 (147)
37 PF04126 Cyclophil_like: Cyclo 33.6 43 0.00093 26.5 2.8 46 180-230 61-113 (120)
38 PF12396 DUF3659: Protein of u 21.9 1.1E+02 0.0023 21.8 2.8 28 208-237 16-43 (64)
39 PF05913 DUF871: Bacterial pro 20.6 55 0.0012 31.0 1.5 51 179-230 298-349 (357)
40 COG0219 CspR Predicted rRNA me 20.4 1.2E+02 0.0027 25.4 3.3 33 106-144 3-35 (155)
No 1
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-58 Score=386.60 Aligned_cols=173 Identities=70% Similarity=1.180 Sum_probs=168.7
Q ss_pred hhccccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhc-cCCCcccCCCEEEEeecCceeeeCCCcCCCCCC
Q 025245 82 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCT-GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG 160 (255)
Q Consensus 82 ~~~~~~~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~-g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g 160 (255)
.+..+++|+++||||+++++..|||+|+||++.+|+||+||++||+ ++++++|.|++||||+|||||||||++.++++|
T Consensus 32 ~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 32 YEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred cCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCC
Confidence 3567889999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CccccCCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 025245 161 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK 240 (255)
Q Consensus 161 ~~~~~g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~ 240 (255)
+.++||+.|+||++.++|+++|.|||||.|||+||||||||+...+|||++|+|||+|++|||+|.+|+.++||++++|.
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeEEecCC
Q 025245 241 VPCRIINSGELPLD 254 (255)
Q Consensus 241 ~~V~I~~cGvL~~~ 254 (255)
++++|.+||+|+.+
T Consensus 192 e~v~I~~~g~l~~~ 205 (217)
T KOG0880|consen 192 EDVVIANCGELPVE 205 (217)
T ss_pred ccEEEeecCccccc
Confidence 99999999999754
No 2
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-57 Score=413.95 Aligned_cols=167 Identities=65% Similarity=1.070 Sum_probs=162.8
Q ss_pred ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc--------ccCCCEEEEeecCceeeeCCCcCCCCC
Q 025245 88 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDGT 159 (255)
Q Consensus 88 ~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~--------~Y~g~~f~Rii~~f~iqgGd~~~~~g~ 159 (255)
.+++|||||+|++.+.|||+||||.|.||+||+||+.||+|++|. .|+|+.||||+++|||||||++.++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 468999999999999999999999999999999999999999984 499999999999999999999999999
Q ss_pred CCccccCCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 025245 160 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP 239 (255)
Q Consensus 160 g~~~~~g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P 239 (255)
||+||||..|+||+|.++|+++++|||||.|||+||||||||+.++|||||+|+|||+||.|++||+.|+.+.+|..++|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeEEecCC
Q 025245 240 KVPCRIINSGELPLD 254 (255)
Q Consensus 240 ~~~V~I~~cGvL~~~ 254 (255)
..+|+|.+||+|...
T Consensus 167 ~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 167 LADVVISDCGELVKK 181 (372)
T ss_pred ccceEeccccccccc
Confidence 999999999999754
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-50 Score=323.80 Aligned_cols=167 Identities=60% Similarity=1.053 Sum_probs=160.4
Q ss_pred cccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC-----CcccCCCEEEEeecCceeeeCCCcCCCCC
Q 025245 85 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK-----GYGYKGCSFHRIIKDFMIQGGDFTEGDGT 159 (255)
Q Consensus 85 ~~~~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~-----g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~ 159 (255)
+...++.+|||+++++.+.|||.||||.+.+|+|++||++.|+|+- ..+|+++.|||++++|||||||+-.++|+
T Consensus 6 r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt 85 (177)
T KOG0879|consen 6 RSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_pred cCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCc
Confidence 3455889999999999999999999999999999999999999853 24799999999999999999999999999
Q ss_pred CCccccCCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 025245 160 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP 239 (255)
Q Consensus 160 g~~~~~g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P 239 (255)
|..++|+.+|+||++.++|.++|+|||||+|+++||.|||||...+.|||++|+|||||++|+.++++|+.+|+..|++|
T Consensus 86 G~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkP 165 (177)
T KOG0879|consen 86 GVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKP 165 (177)
T ss_pred eEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeEEe
Q 025245 240 KVPCRIINSGEL 251 (255)
Q Consensus 240 ~~~V~I~~cGvL 251 (255)
+-+|.|+.||++
T Consensus 166 Kl~v~i~qCGem 177 (177)
T KOG0879|consen 166 KLPVVIVQCGEM 177 (177)
T ss_pred CCcEEEeecccC
Confidence 999999999985
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=9.1e-48 Score=323.27 Aligned_cols=159 Identities=73% Similarity=1.257 Sum_probs=151.0
Q ss_pred ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCC-----cccCCCEEEEeecCceeeeCCCcCCCCCCCccc
Q 025245 90 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG-----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI 164 (255)
Q Consensus 90 ~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g-----~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~ 164 (255)
+++|||+.+++++.|+|+||||.+.||++|+||++||+++++ ++|+++.||||+|+|+||+||+..+++.++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~ 80 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI 80 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence 478999999999999999999999999999999999987666 339999999999999999999887788888899
Q ss_pred cCCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 025245 165 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR 244 (255)
Q Consensus 165 ~g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~ 244 (255)
++..+++|...+.|..+|+|+|++.++++++|||||++++.++||++|+|||+|++|||||++|++++++ +++|.++|+
T Consensus 81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~ 159 (164)
T cd01926 81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVV 159 (164)
T ss_pred cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeE
Confidence 9999999988899989999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred EEeeE
Q 025245 245 IINSG 249 (255)
Q Consensus 245 I~~cG 249 (255)
|.+||
T Consensus 160 I~~cG 164 (164)
T cd01926 160 IADCG 164 (164)
T ss_pred EEECC
Confidence 99998
No 5
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.8e-47 Score=327.72 Aligned_cols=163 Identities=67% Similarity=1.188 Sum_probs=153.4
Q ss_pred cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC---C--cccCCCEEEEeecCceeeeCCCcCCCCCCCcc
Q 025245 89 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK---G--YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 163 (255)
Q Consensus 89 ~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~---g--~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~ 163 (255)
++++|||+.+++++.|||+||||.+.+|++|+||++||+|+. + .+|+++.||||+++|+|||||+..+++.++.+
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~ 97 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS 97 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence 468999999999999999999999999999999999997643 2 24999999999999999999987788889989
Q ss_pred ccCCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCC
Q 025245 164 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP 242 (255)
Q Consensus 164 ~~g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~Vi-eGmdvl~~I~~~~~~~~~~P~~~ 242 (255)
+|+..|++|.+.+.|.++|+|+|++.++++++|||||++.++|+||++|+|||+|+ +|||||++|++++++++++|.++
T Consensus 98 ~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~ 177 (186)
T PLN03149 98 IYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLA 177 (186)
T ss_pred ccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCC
Confidence 99999999988899999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred eEEEeeEEe
Q 025245 243 CRIINSGEL 251 (255)
Q Consensus 243 V~I~~cGvL 251 (255)
|+|.+||++
T Consensus 178 i~I~~cG~~ 186 (186)
T PLN03149 178 CVISECGEM 186 (186)
T ss_pred eEEEeCEeC
Confidence 999999985
No 6
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.7e-46 Score=320.90 Aligned_cols=162 Identities=64% Similarity=1.080 Sum_probs=152.0
Q ss_pred cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccC-------CCcccCCCEEEEeecCceeeeCCCcCCCCCCC
Q 025245 89 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-------KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 161 (255)
Q Consensus 89 ~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~-------~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~ 161 (255)
++++|||+++++++.|+|+||||.+.||++|+||++||+|+ .++ |+|+.||||+|+|+|||||+..+++.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 56899999999999999999999999999999999999753 346 9999999999999999999887778888
Q ss_pred ccccCCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 025245 162 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV 241 (255)
Q Consensus 162 ~~~~g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~ 241 (255)
.++++..+++|...++|.++|+|+|++.++++++|||||++.++++||++|+|||+|++|||||++|++.++ ++++|.+
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~ 172 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKK 172 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcC
Confidence 899999999998889999899999999999999999999999999999999999999999999999999987 4689999
Q ss_pred CeEEEeeEEec
Q 025245 242 PCRIINSGELP 252 (255)
Q Consensus 242 ~V~I~~cGvL~ 252 (255)
+|+|.+||+|.
T Consensus 173 ~v~I~~cg~~~ 183 (183)
T PTZ00060 173 PVVVTDCGELQ 183 (183)
T ss_pred CeEEEEeEEcC
Confidence 99999999984
No 7
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.1e-46 Score=332.40 Aligned_cols=163 Identities=36% Similarity=0.592 Sum_probs=150.9
Q ss_pred cccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc--------ccCCCEEEEeecC-ceeeeCCCcCCC
Q 025245 87 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKD-FMIQGGDFTEGD 157 (255)
Q Consensus 87 ~~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~--------~Y~g~~f~Rii~~-f~iqgGd~~~~~ 157 (255)
..+++||||+++++++.|+|+||||.+.||+||+||++||+|+++. +|+|+.||||+++ |+||+||+..
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-- 127 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-- 127 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC--
Confidence 4578999999999999999999999999999999999999876542 3999999999985 8999999863
Q ss_pred CCCCccccCCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCC
Q 025245 158 GTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTD 237 (255)
Q Consensus 158 g~g~~~~~g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~ 237 (255)
++.+++|..|++|++.++|+++|+|+|++.+++++|||||||+.++|+||++|+|||+|++|||||++|++++++.++
T Consensus 128 --~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~g 205 (249)
T PTZ00221 128 --FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVG 205 (249)
T ss_pred --CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCC
Confidence 234667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeeEEecC
Q 025245 238 YPKVPCRIINSGELPL 253 (255)
Q Consensus 238 ~P~~~V~I~~cGvL~~ 253 (255)
+|.++|+|.+||+|..
T Consensus 206 rP~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 206 RPLLPVTVSFCGALTG 221 (249)
T ss_pred CCCCCeEEEECeEecC
Confidence 9999999999999964
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-48 Score=330.91 Aligned_cols=166 Identities=63% Similarity=1.075 Sum_probs=160.9
Q ss_pred ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCcccc
Q 025245 86 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY 165 (255)
Q Consensus 86 ~~~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~ 165 (255)
+..++.+|+|+.|.+...|||+++|..+..|+|++||+.||+|++||+|+|+.||||||.||+||||++.++|+||.+||
T Consensus 133 a~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiy 212 (298)
T KOG0111|consen 133 AMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIY 212 (298)
T ss_pred hhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEE
Q 025245 166 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRI 245 (255)
Q Consensus 166 g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I 245 (255)
|..|.||++.++|..+|+|+|||+|+|+|||||||++....|||++|+|||.|++||+||+++++.. .+.++|.+.|+|
T Consensus 213 gkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qg-sksgkp~qkv~i 291 (298)
T KOG0111|consen 213 GKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQG-SKSGKPQQKVKI 291 (298)
T ss_pred cccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhcc-CCCCCcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 478999999999
Q ss_pred EeeEEec
Q 025245 246 INSGELP 252 (255)
Q Consensus 246 ~~cGvL~ 252 (255)
.+||+|.
T Consensus 292 ~~cge~~ 298 (298)
T KOG0111|consen 292 VECGEIE 298 (298)
T ss_pred EeccccC
Confidence 9999974
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-46 Score=297.05 Aligned_cols=158 Identities=52% Similarity=0.885 Sum_probs=147.2
Q ss_pred hhccccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCC
Q 025245 82 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 161 (255)
Q Consensus 82 ~~~~~~~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~ 161 (255)
.+||+ +.|+++ |++|.|++|||-+.||+||.||.+|++ +|| |+|..||||+++||||||||+ +.|.||
T Consensus 5 ~~~q~---~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLar--rgY-Yn~v~FHRii~DFmiQGGDPT-GTGRGG 72 (164)
T KOG0881|consen 5 PEWQP---PNVTLE-----TSMGKITLELYWKHAPRTCQNFAELAR--RGY-YNGVIFHRIIKDFMIQGGDPT-GTGRGG 72 (164)
T ss_pred ccCCC---CeEEEe-----ecccceehhhhhhcCcHHHHHHHHHHh--ccc-ccceeeeehhhhheeecCCCC-CCCCCc
Confidence 35553 356665 589999999999999999999999996 899 999999999999999999998 899999
Q ss_pred ccccCCCCCCCc-ccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 025245 162 ISIYGSSFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK 240 (255)
Q Consensus 162 ~~~~g~~~~~e~-~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~ 240 (255)
.++||..|+||- .+++|...|.|+|||.|||+|||||||+|.+.+|||++|++||||+.||+|++++..+.+|.+++|.
T Consensus 73 aSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi 152 (164)
T KOG0881|consen 73 ASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPI 152 (164)
T ss_pred cccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCc
Confidence 999999999986 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeEEe
Q 025245 241 VPCRIINSGEL 251 (255)
Q Consensus 241 ~~V~I~~cGvL 251 (255)
.+|+|.++..+
T Consensus 153 ~~~kIika~~~ 163 (164)
T KOG0881|consen 153 DEVKIIKAYPS 163 (164)
T ss_pred cceeeEeeecC
Confidence 99999987654
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-44 Score=300.99 Aligned_cols=148 Identities=49% Similarity=0.841 Sum_probs=134.5
Q ss_pred ECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCccccc
Q 025245 98 IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK 177 (255)
Q Consensus 98 i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~ 177 (255)
+..|+.|+|+||||++.||+||+||++||+ .++ |+|+.||||+++||+||||++.+++.+++ ++.|++|.+...
T Consensus 3 ~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~--~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~ 76 (158)
T COG0652 3 ILETNKGDITIELYPDKAPKTVANFLQLVK--EGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALN 76 (158)
T ss_pred eeeccCCCEEEEECCCcCcHHHHHHHHHHH--cCC-CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccccc
Confidence 346899999999999999999999999995 788 99999999999999999999987788877 478999988877
Q ss_pred ccC--CeEEEEeecC-CCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEeeEE
Q 025245 178 HVG--PGVLSMANAG-PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIINSGE 250 (255)
Q Consensus 178 h~~--~G~lsma~~g-~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~----~~~P~~~V~I~~cGv 250 (255)
|.+ +|+|||||.+ |++++|||||++.+++|||++|+|||+|++|||+|++|++.++.. .+.|..+++|...++
T Consensus 77 ~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (158)
T COG0652 77 GDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156 (158)
T ss_pred cccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence 777 9999999998 999999999999999999999999999999999999999988775 356778888888776
Q ss_pred e
Q 025245 251 L 251 (255)
Q Consensus 251 L 251 (255)
+
T Consensus 157 ~ 157 (158)
T COG0652 157 V 157 (158)
T ss_pred e
Confidence 5
No 11
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=7.8e-44 Score=296.43 Aligned_cols=146 Identities=52% Similarity=0.834 Sum_probs=137.1
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcc-cccc
Q 025245 100 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH 178 (255)
Q Consensus 100 ~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~-~l~h 178 (255)
.|+.|+|+||||++.||++|+||++||+ .++ |+|+.|||++++|++||||+. +++.++.++++..+++|.. .++|
T Consensus 6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 6 HTNLGDIKIELFCDDCPKACENFLALCA--SGY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEccccEEEEEcCCCCcHHHHHHHHHHh--cCc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCc
Confidence 3689999999999999999999999996 677 999999999999999999986 6677888889999999875 5788
Q ss_pred cCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeE
Q 025245 179 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 249 (255)
Q Consensus 179 ~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~cG 249 (255)
..+|+|+|++.++++++|||||+++++|+||++|+|||+|++|||+|++|++++++++++|.++|+|.+|.
T Consensus 82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999984
No 12
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1e-43 Score=297.37 Aligned_cols=149 Identities=49% Similarity=0.804 Sum_probs=140.5
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccccc
Q 025245 101 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 179 (255)
Q Consensus 101 t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~-~l~h~ 179 (255)
|+.|+|+||||.+.||++|+||++||+ .|+ |+|+.||||+|+|++|+||+. +++.++.++++..+++|.. .++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCK--KGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHh--cCc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCcC
Confidence 689999999999999999999999996 788 999999999999999999986 6778888999999998854 67898
Q ss_pred CCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEecC
Q 025245 180 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 253 (255)
Q Consensus 180 ~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~cGvL~~ 253 (255)
++|+|+|++.++++++|||||++++.|+||++|+|||+|++|||+|++|++++++++++|.++|+|.+|+++.+
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~d 155 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVD 155 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=8.4e-44 Score=294.67 Aligned_cols=144 Identities=59% Similarity=0.942 Sum_probs=135.7
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcc-cccc
Q 025245 100 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH 178 (255)
Q Consensus 100 ~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~-~l~h 178 (255)
.|+.|+|+||||.+.||++|+||++||+ .++ |+|+.|||++|+|++||||+. +++.++.++++..+++|.. .++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h 78 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHAR--NGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKH 78 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhh--cCC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCc
Confidence 4689999999999999999999999996 677 999999999999999999986 6778888889999999875 7889
Q ss_pred cCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 025245 179 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 247 (255)
Q Consensus 179 ~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~ 247 (255)
.++|+|+||+.++++++|||||++.++|+||++|+|||+|++|||||++|++++++++++|.++|+|.+
T Consensus 79 ~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 79 DRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred CCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 889999999999999999999999999999999999999999999999999999999999999999985
No 14
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=4.3e-43 Score=295.45 Aligned_cols=150 Identities=41% Similarity=0.654 Sum_probs=135.8
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccC-------CCCCCC
Q 025245 100 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG-------SSFEDE 172 (255)
Q Consensus 100 ~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g-------~~~~~e 172 (255)
.|+.|+|+||||.+.||++|+||++||+ .++ |+|+.||||+++|+|||||+. +++.++.++++ ..+++|
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~--~~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e 78 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCK--LKY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPE 78 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHh--cCC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCcc
Confidence 4689999999999999999999999996 677 999999999999999999986 56667666654 346666
Q ss_pred c-ccccccCCeEEEEeecCCCCCCceeEEEcCC-CCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 025245 173 S-FVLKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 250 (255)
Q Consensus 173 ~-~~l~h~~~G~lsma~~g~~s~gSqFfItl~~-~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~cGv 250 (255)
. ..++|..+|+|+||+.++++++|||||++.+ .++||++|+|||+|++|||||++|++++++++++|.++|+|.+|++
T Consensus 79 ~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i 158 (166)
T cd01921 79 ILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHI 158 (166)
T ss_pred cCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEE
Confidence 5 4678989999999999999999999999975 7999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 025245 251 LPL 253 (255)
Q Consensus 251 L~~ 253 (255)
|..
T Consensus 159 ~~~ 161 (166)
T cd01921 159 LDD 161 (166)
T ss_pred ECC
Confidence 864
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=5.2e-43 Score=289.38 Aligned_cols=143 Identities=55% Similarity=0.950 Sum_probs=133.6
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCc-ccccc
Q 025245 100 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKH 178 (255)
Q Consensus 100 ~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~-~~l~h 178 (255)
.|+.|+|+||||.+.||++|+||++||+ .++ |+++.|||++|+|++||||+. +++.++.++++..|++|. ..++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h 78 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAK--RGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKH 78 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCC
Confidence 3689999999999999999999999996 678 999999999999999999986 567778888999999985 57889
Q ss_pred cCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 025245 179 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 247 (255)
Q Consensus 179 ~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~ 247 (255)
.++|+|+|++.++++++|||||+++++|+||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus 79 ~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 79 TGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 88999999999999999999999999999999999999999999999999999998 889999999974
No 16
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-42 Score=313.90 Aligned_cols=159 Identities=47% Similarity=0.782 Sum_probs=149.6
Q ss_pred ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCcccc
Q 025245 86 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY 165 (255)
Q Consensus 86 ~~~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~ 165 (255)
..+.++-|..+. |+.|.|.|||+.+.+|++|+||++||. +|| |+|+.|||.|.|||||||||+ |.|.||.+++
T Consensus 272 ~rvKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~--~gY-Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSiW 344 (518)
T KOG0883|consen 272 TRVKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCK--NGY-YNNTIFHRSIRNFMIQGGDPT-GTGRGGESIW 344 (518)
T ss_pred ccccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHh--ccc-ccchHHHHHHHHHeeeCCCCC-CCCCCCcccc
Confidence 345667777764 699999999999999999999999995 999 999999999999999999998 8999999999
Q ss_pred CCCCCCCc-ccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 025245 166 GSSFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR 244 (255)
Q Consensus 166 g~~~~~e~-~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~ 244 (255)
|.+|.||. ..+.|..||+|||||+|||+|||||||+...+.|||++|++||+|+.|+|+|.+|+.++++++++|..+|+
T Consensus 345 gKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~ 424 (518)
T KOG0883|consen 345 GKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIK 424 (518)
T ss_pred CCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceE
Confidence 99999997 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEe
Q 025245 245 IINSGEL 251 (255)
Q Consensus 245 I~~cGvL 251 (255)
|.+.-|.
T Consensus 425 i~~~~VF 431 (518)
T KOG0883|consen 425 IEDAIVF 431 (518)
T ss_pred EeeeEEe
Confidence 9998764
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.1e-40 Score=282.18 Aligned_cols=148 Identities=44% Similarity=0.733 Sum_probs=138.2
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccccc
Q 025245 101 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 179 (255)
Q Consensus 101 t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~-~l~h~ 179 (255)
|+.|+|+||||.+.+|++|+||++||+ +++ |+|+.|||++++|++||||+. +++.++.++|+..+++|.. .+.|+
T Consensus 12 Ts~G~i~ieL~~~~~P~t~~nF~~L~~--~~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~~~~~~~~ 87 (171)
T cd01925 12 TTAGDIDIELWSKEAPKACRNFIQLCL--EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFHSRLRFN 87 (171)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHh--cCC-CCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCcccccCcCCC
Confidence 589999999999999999999999996 778 999999999999999999986 6788888999999998865 56788
Q ss_pred CCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEec
Q 025245 180 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRIINSGELP 252 (255)
Q Consensus 180 ~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~Vi-eGmdvl~~I~~~~~~~~~~P~~~V~I~~cGvL~ 252 (255)
++|+|+|++.++++++|||||++++.++||++|+|||+|+ ++|++|++|++++++++++|.++|+|.+|+++.
T Consensus 88 ~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 88 RRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred CCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 9999999999999999999999999999999999999999 468899999999999999999999999999985
No 18
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.1e-40 Score=286.47 Aligned_cols=146 Identities=34% Similarity=0.558 Sum_probs=128.3
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcccccccC
Q 025245 101 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 180 (255)
Q Consensus 101 t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~~ 180 (255)
|+.|+|+||||.+.||++|+||++||+ ++| |+|+.|||++|+|++||||+....+. ..++..+.+|.....|+.
T Consensus 35 T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~~---~~~~~~~~~e~~~~l~~~ 108 (190)
T PRK10903 35 TSAGNIELELNSQKAPVSVKNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGFTEQMQQ---KKPNPPIKNEADNGLRNT 108 (190)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEeCCceEEeCCcCCCCCC---CCCCCcccCcccccCcCC
Confidence 589999999999999999999999996 788 99999999999999999997643221 223556777765455667
Q ss_pred CeEEEEeecC-CCCCCceeEEEcCCCCCCCC-----CCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEeeEE
Q 025245 181 PGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIINSGE 250 (255)
Q Consensus 181 ~G~lsma~~g-~~s~gSqFfItl~~~~~Ld~-----~~~VFG~VieGmdvl~~I~~~~~~~----~~~P~~~V~I~~cGv 250 (255)
+|+|+||+.+ +++++|||||+++++++||+ +|+|||+|++|||||++|+++++++ +++|.++|+|.+|++
T Consensus 109 ~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v 188 (190)
T PRK10903 109 RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKV 188 (190)
T ss_pred CcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEE
Confidence 9999999965 89999999999999999984 8999999999999999999999976 579999999999999
Q ss_pred ec
Q 025245 251 LP 252 (255)
Q Consensus 251 L~ 252 (255)
++
T Consensus 189 ~~ 190 (190)
T PRK10903 189 LP 190 (190)
T ss_pred eC
Confidence 85
No 19
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-42 Score=317.64 Aligned_cols=156 Identities=53% Similarity=0.831 Sum_probs=147.0
Q ss_pred ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCC
Q 025245 90 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF 169 (255)
Q Consensus 90 ~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~ 169 (255)
+++.=+-+|..|++|+|.|.||+++||+||+||..-|+ .|| |||..||||+++||||+|||. |+|+||.+++|..|
T Consensus 400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~r--ngy-y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~df 475 (558)
T KOG0882|consen 400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSR--NGY-YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDF 475 (558)
T ss_pred ceecccceEEEecccceEEEecccccchhhhhhhcccc--Ccc-ccCcchHHhhhhheeecCCCC-CCCCCCcccccccc
Confidence 34444566778999999999999999999999999996 899 999999999999999999997 89999999999999
Q ss_pred CCCc-ccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 025245 170 EDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 248 (255)
Q Consensus 170 ~~e~-~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~c 248 (255)
+||. ..+.|+++-+|||||.|||+||||||||+.+.||||++|+|||||..|||||++|+++.+++.++|.++|.|.+-
T Consensus 476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini 555 (558)
T KOG0882|consen 476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI 555 (558)
T ss_pred hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence 9997 479999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred E
Q 025245 249 G 249 (255)
Q Consensus 249 G 249 (255)
-
T Consensus 556 s 556 (558)
T KOG0882|consen 556 S 556 (558)
T ss_pred e
Confidence 4
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=6.4e-40 Score=275.83 Aligned_cols=146 Identities=36% Similarity=0.578 Sum_probs=125.1
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCccccccc
Q 025245 100 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHV 179 (255)
Q Consensus 100 ~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~ 179 (255)
.|+.|+|+|+||.+.||++|+||++||+ .+| |+|+.||||+|+|+|||||+..+.+.. .++..+++|.....|.
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~~~~~~~ 78 (164)
T PRK10791 5 HTNHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLKN 78 (164)
T ss_pred EEccccEEEEEeCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCcccccccC
Confidence 4799999999999999999999999996 788 999999999999999999976443322 2355677775433334
Q ss_pred CCeEEEEeecC-CCCCCceeEEEcCCCCCCC-------C-CCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEE
Q 025245 180 GPGVLSMANAG-PNTNGSQFFICTVKTPWLD-------N-RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRII 246 (255)
Q Consensus 180 ~~G~lsma~~g-~~s~gSqFfItl~~~~~Ld-------~-~~~VFG~VieGmdvl~~I~~~~~~~----~~~P~~~V~I~ 246 (255)
.+|+||||+.+ |++++|||||++.++++|| + +|+|||+|++|||||++|+++++++ +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 79999999975 9999999999999988876 3 6999999999999999999999987 37999999999
Q ss_pred eeEEe
Q 025245 247 NSGEL 251 (255)
Q Consensus 247 ~cGvL 251 (255)
+|.+.
T Consensus 159 ~~~i~ 163 (164)
T PRK10791 159 SVTVS 163 (164)
T ss_pred EEEEe
Confidence 99764
No 21
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=279.00 Aligned_cols=163 Identities=65% Similarity=1.135 Sum_probs=156.4
Q ss_pred ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEE---eecCceeeeCCCcCCCCCCCccc
Q 025245 88 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR---IIKDFMIQGGDFTEGDGTGGISI 164 (255)
Q Consensus 88 ~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~R---ii~~f~iqgGd~~~~~g~g~~~~ 164 (255)
.++++|||++++++++|+++++||.+..|+|++||..||+|+++++|++..||| .+++||+||||++.++++++.++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 468999999999999999999999999999999999999999999999999999 34579999999999999999999
Q ss_pred cCCCCCCCcccccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 025245 165 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR 244 (255)
Q Consensus 165 ~g~~~~~e~~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~ 244 (255)
|++.|+||++.++|..+|+|+|||.+||+|||||||++....|||++|+|||+|.+||+++++++.. ..+++++.++|.
T Consensus 82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~-gs~~gk~~~~i~ 160 (167)
T KOG0865|consen 82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERF-GSRNGKTSKKIT 160 (167)
T ss_pred cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhcc-CCcCCcccccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 668999999999
Q ss_pred EEeeEEe
Q 025245 245 IINSGEL 251 (255)
Q Consensus 245 I~~cGvL 251 (255)
|.+||+|
T Consensus 161 i~dcg~l 167 (167)
T KOG0865|consen 161 IADCGQL 167 (167)
T ss_pred EecCCcC
Confidence 9999986
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.5e-39 Score=269.79 Aligned_cols=141 Identities=38% Similarity=0.530 Sum_probs=123.8
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcccccccC
Q 025245 101 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 180 (255)
Q Consensus 101 t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~~ 180 (255)
|+.|+|+||||.+.||++|+||++||+ .+| |+|+.||||+|+|++||||+....+. ..++..+++|.....|+.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~ 77 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVR--KGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT 77 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHh--cCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence 689999999999999999999999996 788 99999999999999999998744322 223556777765555668
Q ss_pred CeEEEEeecC-CCCCCceeEEEcCCCCCCCC-----CCeEEEEEEcCHHHHHHhhcCCCCCC----CCCCCCeEEEe
Q 025245 181 PGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIIN 247 (255)
Q Consensus 181 ~G~lsma~~g-~~s~gSqFfItl~~~~~Ld~-----~~~VFG~VieGmdvl~~I~~~~~~~~----~~P~~~V~I~~ 247 (255)
+|+|+||+.+ +++++|||||+++++++||+ +|+|||+|++|||||++|++++++.+ ++|..+|+|.+
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 9999999965 89999999999999999995 79999999999999999999999774 69999999976
No 23
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-39 Score=255.16 Aligned_cols=146 Identities=49% Similarity=0.768 Sum_probs=137.6
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcc-ccccc
Q 025245 101 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 179 (255)
Q Consensus 101 t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~-~l~h~ 179 (255)
|..|+|.||||.+.+|++|+||+.||. ..| |+++.|||-+|+|++|+||++ ..|.||.+++|.+|+||.. .++|+
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~--~~~-~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh~ 82 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCA--SDY-YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKHN 82 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhh--hhh-ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhhc
Confidence 578999999999999999999999994 667 999999999999999999997 6889999999999999974 68999
Q ss_pred CCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeEE
Q 025245 180 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGE 250 (255)
Q Consensus 180 ~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~-~~P~~~V~I~~cGv 250 (255)
.||.++|||.|||+|+|||||+.+..||||-+|+|||+||+|+|.|+.|+++++++. .+|..++.|.+..+
T Consensus 83 ~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred cceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 999999999999999999999999999999999999999999999999999999875 89999999988654
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.8e-38 Score=260.89 Aligned_cols=150 Identities=51% Similarity=0.845 Sum_probs=131.2
Q ss_pred EEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCC-ccccCCCCCC
Q 025245 93 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG-ISIYGSSFED 171 (255)
Q Consensus 93 ~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~-~~~~g~~~~~ 171 (255)
||+|++++ .|+|+||||++.||++|+||++||+ .++ |+|+.|||+++++++|+|++......+. ....+..+++
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~ 75 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT--SGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPD 75 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH--TTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc--ccc-cCCceeecccccceeeeeeccCCCCcccccccCcccccc
Confidence 78888755 9999999999999999999999997 667 9999999999999999999875443111 1223446888
Q ss_pred Ccc--cccccCCeEEEEeecC--CCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 025245 172 ESF--VLKHVGPGVLSMANAG--PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 247 (255)
Q Consensus 172 e~~--~l~h~~~G~lsma~~g--~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~ 247 (255)
|.. .+.| .+|+|+|++.+ +++++|||||+|.+.++||++|+|||+|++|||+|++|++++++. +|.++|+|.+
T Consensus 76 E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~ 152 (155)
T PF00160_consen 76 EFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISS 152 (155)
T ss_dssp SGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEE
T ss_pred ccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEE
Confidence 873 5667 79999999975 889999999999999999999999999999999999999999887 9999999999
Q ss_pred eEE
Q 025245 248 SGE 250 (255)
Q Consensus 248 cGv 250 (255)
|||
T Consensus 153 cgv 155 (155)
T PF00160_consen 153 CGV 155 (155)
T ss_dssp EEE
T ss_pred eEC
Confidence 997
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=8.1e-38 Score=256.74 Aligned_cols=142 Identities=56% Similarity=0.888 Sum_probs=128.5
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCccccc-cc
Q 025245 101 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK-HV 179 (255)
Q Consensus 101 t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~-h~ 179 (255)
|+.|+|+||||.+.+|++|+||++||+ .++ |+|+.|||++|++++|+||+......+ +.++..+++|..... |.
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~--~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~ 78 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLAR--GGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH 78 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHh--cCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence 577999999999999999999999996 566 999999999999999999987544322 345678888887655 78
Q ss_pred CCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 025245 180 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 247 (255)
Q Consensus 180 ~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~ 247 (255)
++|+|+|++.++++++|||||++.+.++||++|+|||+|++|||+|++|++.+++++++|.++|+|.+
T Consensus 79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 79 RRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999973
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=6.1e-36 Score=254.30 Aligned_cols=128 Identities=38% Similarity=0.606 Sum_probs=108.5
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCC--------------------C
Q 025245 100 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDG--------------------T 159 (255)
Q Consensus 100 ~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g--------------------~ 159 (255)
.|+.|+|+||||++.||+||+||++||+ .+| |+++.||||+++|||||||+...+. .
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~ 79 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVE--RGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG 79 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHH--hCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence 4789999999999999999999999996 788 9999999999999999999864311 1
Q ss_pred CCccccCCCCC-----CCcccccccCCeEEEEeecC--CCCCCceeEEEcC-------CCCCCCCCCeEEEEEEcCHHHH
Q 025245 160 GGISIYGSSFE-----DESFVLKHVGPGVLSMANAG--PNTNGSQFFICTV-------KTPWLDNRHVVFGHVIDGMDVV 225 (255)
Q Consensus 160 g~~~~~g~~~~-----~e~~~l~h~~~G~lsma~~g--~~s~gSqFfItl~-------~~~~Ld~~~~VFG~VieGmdvl 225 (255)
.+.++++..+. ++.....|+.+|+|+||+.+ +++++|||||+++ +.++||++|+|||+|++|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl 159 (176)
T cd01924 80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL 159 (176)
T ss_pred CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence 12244554432 44455667789999999987 6999999999998 7899999999999999999999
Q ss_pred HHhhc
Q 025245 226 RKLES 230 (255)
Q Consensus 226 ~~I~~ 230 (255)
++|+.
T Consensus 160 ~~I~~ 164 (176)
T cd01924 160 RELKV 164 (176)
T ss_pred HhhcC
Confidence 99975
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-36 Score=271.70 Aligned_cols=159 Identities=42% Similarity=0.707 Sum_probs=147.9
Q ss_pred ccccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCcc
Q 025245 84 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 163 (255)
Q Consensus 84 ~~~~~~~~v~~di~i~~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~ 163 (255)
++|..+-+|.+. |+.|+|.||||+..||++|.||++||. .|| |+|+.|||++|+|++|||||+ ++|+||.+
T Consensus 7 ~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOG--egy-y~nt~fhrlvp~f~~Qggdp~-~~gtGges 77 (439)
T KOG0885|consen 7 LEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCL--EGY-YDNTEFHRLVPGFLVQGGDPT-GTGTGGES 77 (439)
T ss_pred cCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHH--hcc-ccCceeeeeccchhcccCCCC-CCCCCccc
Confidence 445666777665 588999999999999999999999996 899 999999999999999999997 89999999
Q ss_pred ccCCCCCCCcc-cccccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCC
Q 025245 164 IYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKV 241 (255)
Q Consensus 164 ~~g~~~~~e~~-~l~h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~Vi-eGmdvl~~I~~~~~~~~~~P~~ 241 (255)
|||.+|.+|.. ++.++++|+|+||+.+.+.||||||+||+++|||+++|++||+|+ +-+..+-+|..+.++.+.+|..
T Consensus 78 iyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~ 157 (439)
T KOG0885|consen 78 IYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVD 157 (439)
T ss_pred cccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCC
Confidence 99999999974 688889999999999999999999999999999999999999999 5788999999999999999999
Q ss_pred CeEEEeeEEe
Q 025245 242 PCRIINSGEL 251 (255)
Q Consensus 242 ~V~I~~cGvL 251 (255)
+-+|.+|.+|
T Consensus 158 p~kI~s~EV~ 167 (439)
T KOG0885|consen 158 PPKIKSVEVL 167 (439)
T ss_pred ccceeeeEee
Confidence 9999999987
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=262.75 Aligned_cols=150 Identities=41% Similarity=0.637 Sum_probs=138.4
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCC-------CCCCC
Q 025245 100 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS-------SFEDE 172 (255)
Q Consensus 100 ~t~~G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~-------~~~~e 172 (255)
.|++|+|+|+||.+.+|.+|.||++||+ ..| |+.|.||.|..||.+|.|||+ |.|.||.++|+. .|+.|
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLCk--~KY-YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLCK--IKY-YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHHh--Hhh-cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhh
Confidence 5789999999999999999999999995 667 999999999999999999998 699999998864 35556
Q ss_pred c-ccccccCCeEEEEeecCCCCCCceeEEEcCCC-CCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 025245 173 S-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKT-PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 250 (255)
Q Consensus 173 ~-~~l~h~~~G~lsma~~g~~s~gSqFfItl~~~-~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~cGv 250 (255)
. ..++|.+.|+|+|++.|.|.+||||||||+++ .+||++|+|||+|.||||+|.+|+..-+|++++|.++|+|.+.-+
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii 161 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII 161 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence 5 47899999999999999999999999999874 599999999999999999999999999999999999999999999
Q ss_pred ecC
Q 025245 251 LPL 253 (255)
Q Consensus 251 L~~ 253 (255)
|++
T Consensus 162 LdD 164 (479)
T KOG0415|consen 162 LDD 164 (479)
T ss_pred ecC
Confidence 864
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0001 Score=70.36 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=112.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCC----ccccC-CCCCC--Cccccc
Q 025245 105 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG----ISIYG-SSFED--ESFVLK 177 (255)
Q Consensus 105 ~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~----~~~~g-~~~~~--e~~~l~ 177 (255)
-|.|+++.+-.|.-++-|...|. .++ +++..|.||...+++|.||.......+| |+..+ ..+++ .++.++
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q--~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K 189 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQ--DGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK 189 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCc--cce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccc
Confidence 89999999999999999999994 788 9999999999999999998543222222 12111 11333 345677
Q ss_pred ccCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 025245 178 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 250 (255)
Q Consensus 178 h~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~~P~~~V~I~~cGv 250 (255)
|. .-++.....-....+-+|++.-...+-+..+..|||++.+|-++++.|.+..++....|+.++.|.+...
T Consensus 190 ~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 190 HE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred cc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 74 5666666655556678899988888888999999999999999999999999999999999998887643
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.94 E-value=0.043 Score=53.46 Aligned_cols=102 Identities=22% Similarity=0.366 Sum_probs=64.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcccccccCCeEE
Q 025245 105 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVL 184 (255)
Q Consensus 105 ~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~~~G~l 184 (255)
.+.+||..+ +|.+++.|+.+.+ .|. + .+.+...-|+ ......|...+.|+.. -..+|+|
T Consensus 202 y~evE~~~~-~p~s~EH~la~~~--~G~-~---~Vd~~tsTfi------------~d~~L~g~~~p~En~~--~R~rGtV 260 (503)
T TIGR03268 202 YVEVELDPN-APVSVEHFLALME--DGT-F---RVDYRTSTFI------------SDDSLRGLDKPEENIE--KRRRGAV 260 (503)
T ss_pred EEEEEEcCC-CChhHHHHHHHHh--CCe-E---EEeeeecceE------------ecccccCccCCccccC--cccceeE
Confidence 566676655 9999999999985 554 1 1111111111 1112234556666653 2358999
Q ss_pred EEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhc
Q 025245 185 SMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 230 (255)
Q Consensus 185 sma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~ 230 (255)
.+.+.|.+ -...||--.+.+ ..-.|+|+|+|+.|||+++--++
T Consensus 261 TVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 261 TVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred EEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 99998744 346788665544 23469999999999999875543
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.86 E-value=0.059 Score=52.50 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=63.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcccccccCCeE
Q 025245 104 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 183 (255)
Q Consensus 104 G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~~~G~ 183 (255)
--|.|+||.+.||.++..|+++. |-+...---..+|=..++.++-=|+.. ++..+.+|+..-.-...|.
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~ 443 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFT-GLKTKPVGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAGV 443 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhc-CCcccccceeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccce
Confidence 36899999999999999999986 211100111244445555433323222 2233445544434445777
Q ss_pred EEEeecC---CCCCCceeEE--EcCCCC-CCCCCCeEEEEEEcCHHHHHHhhcC
Q 025245 184 LSMANAG---PNTNGSQFFI--CTVKTP-WLDNRHVVFGHVIDGMDVVRKLESV 231 (255)
Q Consensus 184 lsma~~g---~~s~gSqFfI--tl~~~~-~Ld~~~~VFG~VieGmdvl~~I~~~ 231 (255)
|++-|.. .+..|-+|-= -+++.. .+++. -++|+|+++++.|+++..-
T Consensus 444 IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gT-NIiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 444 IGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGT-NIIGRVVEGMERLKGLKEG 496 (503)
T ss_pred EeeechhhhcCceEEEEccCCcccCCCCCCccCc-ceEEEecCChhHhcccccC
Confidence 7776532 1222211100 012222 34444 4679999999999888753
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.021 Score=54.08 Aligned_cols=103 Identities=24% Similarity=0.398 Sum_probs=65.9
Q ss_pred eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcccccccCCeE
Q 025245 104 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 183 (255)
Q Consensus 104 G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~~~G~ 183 (255)
=.+.+||.++ +|++++.|++|.. .|. + =-....|-++ +.++......+.|++.+. .+|.
T Consensus 203 Ty~eve~s~n-sP~saEH~lalme--dG~-l----ri~~~tntfi-----------s~~~lq~~~~~~en~d~R--erG~ 261 (512)
T COG4070 203 TYFEVELSRN-SPKSAEHFLALME--DGT-L----RIDVTTNTFI-----------SDDTLQEEKVPEENFDLR--ERGA 261 (512)
T ss_pred EEEEEEeCCC-CchhHHHHHHHhh--cce-E----EEEEecccee-----------eccccccccCChhhhhhh--hcce
Confidence 3577787766 8999999999984 554 1 0111111111 112333556677777654 4899
Q ss_pred EEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhc
Q 025245 184 LSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 230 (255)
Q Consensus 184 lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~ 230 (255)
+...|.|-+ ...-||--.+.+. --.|.|.|||++||+++|--.+
T Consensus 262 iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 262 ITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred EEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 999997643 2467886554332 2358999999999999875544
No 33
>PRK00969 hypothetical protein; Provisional
Probab=95.69 E-value=0.057 Score=52.74 Aligned_cols=102 Identities=22% Similarity=0.360 Sum_probs=65.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcccccccCCeEE
Q 025245 105 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVL 184 (255)
Q Consensus 105 ~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~~~G~l 184 (255)
.+.+||..+ +|.+++.|+.+.+ .|. + .+.+...-|+ ...+..|...+.|++. -..+|+|
T Consensus 205 y~eve~~~~-~p~s~EH~la~~~--~G~-f---~Vd~~tstfI------------~d~~L~g~~~p~En~~--~R~~GtV 263 (508)
T PRK00969 205 YVEVELDPG-APKSVEHFLALLE--DGT-F---EVDFETSTFI------------ADDRLQGLKIPEENFE--PRRRGTV 263 (508)
T ss_pred EEEEEEcCC-CCchHHHHHHHHh--CCe-E---EEeeeecceE------------eeccccCccCCccccC--ccccceE
Confidence 566787766 9999999999995 554 1 1111111111 0112234556666654 2358999
Q ss_pred EEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEcCHHHHHHhhc
Q 025245 185 SMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 230 (255)
Q Consensus 185 sma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~VieGmdvl~~I~~ 230 (255)
.+.+.|.+ ....||--.+.+ ..-.|+|+|+|+.|||+++--++
T Consensus 264 TVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 264 TVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred EEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 99998744 346788666544 23469999999999999875543
No 34
>PRK00969 hypothetical protein; Provisional
Probab=95.00 E-value=0.16 Score=49.61 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=62.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecCceeeeCCCcCCCCCCCccccCCCCCCCcccccccCCeEE
Q 025245 105 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVL 184 (255)
Q Consensus 105 ~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~~~G~l 184 (255)
-|.|+||.+.||+++..|+++. |-+-..---..+|=..++.++-=|+.. ++..+.+||..-.-...|.|
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t-GL~~~~VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag~I 447 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT-GLKTKPVGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAGEI 447 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc-CCcccccceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccceE
Confidence 6899999999999999999986 111000011244445556444433322 22334555554445567777
Q ss_pred EEeecC---CCCCCceeEE--EcCCCC-CCCCCCeEEEEEEcCHHHHHHhhcC
Q 025245 185 SMANAG---PNTNGSQFFI--CTVKTP-WLDNRHVVFGHVIDGMDVVRKLESV 231 (255)
Q Consensus 185 sma~~g---~~s~gSqFfI--tl~~~~-~Ld~~~~VFG~VieGmdvl~~I~~~ 231 (255)
++-|.. .+..|-+|-= -+++.. .+++ --++|+|+ ++|-|+++..-
T Consensus 448 gvTN~a~k~~G~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKeG 498 (508)
T PRK00969 448 GVTNMAAKYKGMIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKEG 498 (508)
T ss_pred eeechhhhcCceEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhcccccC
Confidence 776532 1111111000 012222 2333 35789999 99999888753
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.2 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhHHHHHHHHh
Q 025245 105 RIVMGLFGDVVPKTAENFRALC 126 (255)
Q Consensus 105 ~ivIeL~~~~aP~t~~nF~~L~ 126 (255)
-|.||||.+.||.++..|+++.
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 5899999999999999999886
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=88.13 E-value=3.3 Score=34.39 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=52.3
Q ss_pred eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeecC--ceeeeCCCcCCCCCCCccccCCCCCCCcccccccCC
Q 025245 104 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKD--FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGP 181 (255)
Q Consensus 104 G~ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~~--f~iqgGd~~~~~g~g~~~~~g~~~~~e~~~l~h~~~ 181 (255)
-.++.+|..|.||+||+-|.+.- - |.+..+|-...+ .++.-+++.. .....||.. .|..+
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L---P---~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T-~~P~p 69 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL---P---LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHT-VTPIP 69 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEE-SS--T
T ss_pred eEEEEEEcccCChHHHHHHHHhC---C---CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCc-ccCCC
Confidence 36889999999999999999986 2 555556554443 2333344320 112223322 23346
Q ss_pred eEEEEe--e-cCCC--CC-CceeEEEcCCCC--------CCCCCCeEEEEEEcCHHHHHHhhc
Q 025245 182 GVLSMA--N-AGPN--TN-GSQFFICTVKTP--------WLDNRHVVFGHVIDGMDVVRKLES 230 (255)
Q Consensus 182 G~lsma--~-~g~~--s~-gSqFfItl~~~~--------~Ld~~~~VFG~VieGmdvl~~I~~ 230 (255)
|-|.+- . .... .. -++.-|.++... ++- -.+|++|++|+|-|.++-.
T Consensus 70 Gdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 70 GDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR 130 (147)
T ss_dssp TEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred CcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence 666665 1 1111 11 133334333222 222 3789999999997766643
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=33.62 E-value=43 Score=26.54 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCeEEEEeecCCCCCCceeEEEcCCCC-------CCCCCCeEEEEEEcCHHHHHHhhc
Q 025245 180 GPGVLSMANAGPNTNGSQFFICTVKTP-------WLDNRHVVFGHVIDGMDVVRKLES 230 (255)
Q Consensus 180 ~~G~lsma~~g~~s~gSqFfItl~~~~-------~Ld~~~~VFG~VieGmdvl~~I~~ 230 (255)
..|-|+.-..+.+ |-|-+++.| .+-....++|+|.+|.+.++++..
T Consensus 61 ~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 61 EAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp -TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 5788888654433 777777765 344567999999999988888754
No 38
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=21.89 E-value=1.1e+02 Score=21.83 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=21.0
Q ss_pred CCCCCeEEEEEEcCHHHHHHhhcCCCCCCC
Q 025245 208 LDNRHVVFGHVIDGMDVVRKLESVETSRTD 237 (255)
Q Consensus 208 Ld~~~~VFG~VieGmdvl~~I~~~~~~~~~ 237 (255)
+|..-.++|+|++| -+++|.-..+++++
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G 43 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDG 43 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCC
Confidence 45566899999999 56667766677654
No 39
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=20.63 E-value=55 Score=31.02 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=34.5
Q ss_pred cCCeEEEEeecCCCCCCceeEEEcCCCCCCCCCCeEEEEEEc-CHHHHHHhhc
Q 025245 179 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVID-GMDVVRKLES 230 (255)
Q Consensus 179 ~~~G~lsma~~g~~s~gSqFfItl~~~~~Ld~~~~VFG~Vie-Gmdvl~~I~~ 230 (255)
..+|.|.+.|..-.-...+.=|++.+.|. |++.-|.|+|.+ -+.+|+-|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 36899999997666667799999999886 889999999995 6888888863
No 40
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=20.42 E-value=1.2e+02 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=28.9
Q ss_pred EEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEeec
Q 025245 106 IVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 144 (255)
Q Consensus 106 ivIeL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~f~Rii~ 144 (255)
+.|-||.-+-|..+.|.+++|. -.|+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca------~tga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCA------ATGAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHH------hcCCeEEEEcc
Confidence 6788999999999999999994 45899999976
Done!