BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025246
(255 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/271 (85%), Positives = 242/271 (89%), Gaps = 16/271 (5%)
Query: 1 MASVCASPAVAAIS--SPSSQKSRSVAGATKASFLGGKKLKLRKNGA-TAGTRSVSVSAA 57
MASVCAS A+AA++ SPSSQK+ SV GATKASFLGGK+L L+K A AGTRS +VSAA
Sbjct: 1 MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAA 60
Query: 58 AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
AADPNRPLWFPGSTPP WLDGSLPGDFGFDPLGL EIVHCRWAMLGAA
Sbjct: 61 AADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAA 120
Query: 105 GIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
GIFIPE LTK+GILNTPSWYTAGELEYFTD TTLFIVEMIFIGWAEGRRWADIIKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVN 180
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQ 240
Query: 225 HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
IYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 241 AIYTGTGPIDNLFAHLADPGHATIFAAFTPK 271
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/270 (80%), Positives = 238/270 (88%), Gaps = 15/270 (5%)
Query: 1 MASVCASPAVAAI--SSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
MAS CAS +AA+ SSPSSQK+ S+ GATKASFLGGK+L++ K A G+RSV+VSA A
Sbjct: 1 MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVA 60
Query: 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
ADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGL E+VH RWAMLGAAG
Sbjct: 61 ADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG 120
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
IFIPE LTK+G+LNTPSWYTAGE EYFTDTTTLF++E++ IGWAEGRRWADIIKPGCVNT
Sbjct: 121 IFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNT 180
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH 240
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
IYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct: 241 IYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/273 (80%), Positives = 235/273 (86%), Gaps = 19/273 (6%)
Query: 1 MASVCASPAVAAISSPSS-----QKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVS 55
MASVCAS A+AA+S SS QK+ + G+TKASFL GKKL+L+K A RSV+V
Sbjct: 1 MASVCASSAIAAVSISSSRQVLSQKTGFLVGSTKASFLSGKKLRLKKYTAPTAARSVTV- 59
Query: 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL E+VHCRWAMLG
Sbjct: 60 CVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 119
Query: 103 AAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGC 162
AAGIFIPE LTK+GILNTPSWYTAGELEYFTDTTTLFIVE+ FIGWAEGRRWADI+KPGC
Sbjct: 120 AAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADILKPGC 179
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAW
Sbjct: 180 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 239
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
FQHIYTGTGPIDNL AHLADPGHATVF+AFTPK
Sbjct: 240 FQHIYTGTGPIDNLFAHLADPGHATVFSAFTPK 272
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/270 (78%), Positives = 232/270 (85%), Gaps = 15/270 (5%)
Query: 1 MASVCASPAVAAI--SSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
MAS CAS +AA+ SSPSS+++ S+ G TKASFLGG++L++ K T RS + A
Sbjct: 1 MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVA 60
Query: 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
ADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAG
Sbjct: 61 ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAG 120
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
IFIPELLTK+GILNTPSWYTAGE EYFTDTTTLFIVE++ IGWAEGRRWADIIKPGCVNT
Sbjct: 121 IFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNT 180
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 181 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH 240
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
IYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct: 241 IYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/254 (81%), Positives = 222/254 (87%), Gaps = 13/254 (5%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPE 74
+PSSQK+ S+ G+TKASFL G+KLK+ A G RS + A A+P+RPLWFPGSTPP
Sbjct: 17 TPSSQKNGSLLGSTKASFLSGRKLKVNNFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPP 76
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTP 121
WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAGIFIPE LTK+GILNTP
Sbjct: 77 WLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTP 136
Query: 122 SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 181
SWYTAGELEYFTDTTTLFIVE+ FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY
Sbjct: 137 SWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 196
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLA
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256
Query: 242 DPGHATVFAAFTPK 255
DPGHAT+FAAFTPK
Sbjct: 257 DPGHATIFAAFTPK 270
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/254 (81%), Positives = 222/254 (87%), Gaps = 13/254 (5%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPE 74
+PSSQK+ S+ G+TKASFL G+KLK+ A G RS + A A+P+RPLWFPGSTPP
Sbjct: 17 TPSSQKNGSLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPP 76
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTP 121
WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAGIFIPE LTK+GILNTP
Sbjct: 77 WLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTP 136
Query: 122 SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 181
SWYTAGELEYFTDTTTLF+VE+ FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY
Sbjct: 137 SWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 196
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLA
Sbjct: 197 PGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 256
Query: 242 DPGHATVFAAFTPK 255
DPGHAT+FAAFTPK
Sbjct: 257 DPGHATIFAAFTPK 270
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/270 (81%), Positives = 235/270 (87%), Gaps = 16/270 (5%)
Query: 1 MASVCASPAVAAISSPSS--QKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
MASVCAS A+AA+S SS QK+ + G+TKASFL GKKL+L+K A RSV+V A
Sbjct: 1 MASVCASSAIAAVSISSSSSQKTGFLVGSTKASFLSGKKLRLKKYTAPTAARSVTV-CVA 59
Query: 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
ADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAG
Sbjct: 60 ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
IFIPE LTK+GILNTPSWYTAGELEYFTDTTTLFIVE+ FIGWAEGRRWADI+KPGCVNT
Sbjct: 120 IFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNT 179
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 180 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 239
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
IYTGTGPIDNL AHLADPGHATVF+AFTPK
Sbjct: 240 IYTGTGPIDNLFAHLADPGHATVFSAFTPK 269
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/251 (82%), Positives = 219/251 (87%), Gaps = 13/251 (5%)
Query: 18 SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD 77
SQK+ S+ G+TKASFL G+KLK+ A G RS + A A+P+RPLWFPGSTPP WLD
Sbjct: 31 SQKNGSLLGSTKASFLSGRKLKVNNFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLD 90
Query: 78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY 124
GSLPGDFGFDPLGL E+VHCRWAMLGAAGIFIPE LTK+GILNTPSWY
Sbjct: 91 GSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 150
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
TAGELEYFTDTTTLFIVE+ FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG
Sbjct: 151 TAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 210
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
LWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPG
Sbjct: 211 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 270
Query: 245 HATVFAAFTPK 255
HAT+FAAFTPK
Sbjct: 271 HATIFAAFTPK 281
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/251 (81%), Positives = 219/251 (87%), Gaps = 13/251 (5%)
Query: 18 SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD 77
SQK+ S+ G+TKASFL G+KLK+ A G RS + A A+P+RPLWFPGSTPP WLD
Sbjct: 31 SQKNGSLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLD 90
Query: 78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY 124
GSLPGDFGFDPLGL E+VHCRWAMLGAAGIFIPE LTK+GILNTPSWY
Sbjct: 91 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 150
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
TAGELEYFTDTTTLF+VE+ FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG
Sbjct: 151 TAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 210
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
LWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPG
Sbjct: 211 LWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPG 270
Query: 245 HATVFAAFTPK 255
HAT+FAAFTPK
Sbjct: 271 HATIFAAFTPK 281
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/271 (79%), Positives = 236/271 (87%), Gaps = 17/271 (6%)
Query: 1 MASVCASPAVAAISS--PSSQKSRSVAGATKASFLGGKKLKLRKNGA-TAGTRSVSVSAA 57
MASVCAS A+AA++ PSSQ + S GATKASFL GK+L +RK+ + +RSV+V A
Sbjct: 1 MASVCASSAIAAVAISSPSSQINGSTVGATKASFLSGKRLTVRKHTSPVVASRSVTV-CA 59
Query: 58 AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
ADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL E+VHCRWAMLGAA
Sbjct: 60 VADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAA 119
Query: 105 GIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
GIFIPE LTK+GILNTPSWY AG+LEYFTDTTTLFI+E+IFIGWAEGRRWADI+KPGCVN
Sbjct: 120 GIFIPEFLTKIGILNTPSWYDAGKLEYFTDTTTLFIIELIFIGWAEGRRWADILKPGCVN 179
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
TDPIFPNN+LTGTDVGYPGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 180 TDPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 239
Query: 225 HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
HIYTGTGPIDNL AHLADPGHATVFAAF+PK
Sbjct: 240 HIYTGTGPIDNLFAHLADPGHATVFAAFSPK 270
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/270 (80%), Positives = 235/270 (87%), Gaps = 16/270 (5%)
Query: 1 MASVCASPAVAAISSPSS--QKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
MA+VCAS A+AA+S SS QK+ S+ G+TKASFL GKKL+LR + RSV+V A
Sbjct: 1 MAAVCASSAIAAVSISSSSSQKTGSLVGSTKASFLRGKKLRLRTYTSPTAARSVTV-CVA 59
Query: 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
ADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAG
Sbjct: 60 ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
IFIPE LTK+GILNTPSWY+AGE+EYFTDTTTLFIVE+ FIGWAEGRRWADI+KPGCVNT
Sbjct: 120 IFIPEFLTKIGILNTPSWYSAGEVEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNT 179
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 180 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 239
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
IYTGTGPIDNL AHLADPGHATVFAAFTPK
Sbjct: 240 IYTGTGPIDNLFAHLADPGHATVFAAFTPK 269
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/272 (78%), Positives = 230/272 (84%), Gaps = 17/272 (6%)
Query: 1 MASVCASPAVAAISSPSSQKSRS---VAGATKASFLGGKKLKLRKNGA-TAGTRSVSVSA 56
MASVCAS A+AA+++ S ++ G+ + F G++ + + A AGTRS +VSA
Sbjct: 1 MASVCASSAMAAVATISPRQFSEDWVCCGSNQGLFSWGEETEPEEFTAPAAGTRSFTVSA 60
Query: 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGA 103
AAADPNRPLWFPGSTPP WLDGSLPGDFGFDPLGL EIVHCRWAMLGA
Sbjct: 61 AAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGA 120
Query: 104 AGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
AGIFIPE LTK+GILNTPSWYTAGELEYFTD TTLFIVEMIFIGWAEGRRWADIIKPGCV
Sbjct: 121 AGIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCV 180
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWF
Sbjct: 181 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWF 240
Query: 224 QHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Q IYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 241 QAIYTGTGPIDNLFAHLADPGHATIFAAFTPK 272
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/257 (81%), Positives = 222/257 (86%), Gaps = 14/257 (5%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST 71
AIS+PSSQK+ S G TKA FL G+KLK+ A G RS + AAA+P+RPLWFPGST
Sbjct: 14 AISTPSSQKNGSPLGTTKA-FLSGRKLKVNTFTAPVGARSTTTVCAAAEPDRPLWFPGST 72
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGIL 118
PP WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAGIFIPE LTK+GIL
Sbjct: 73 PPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL 132
Query: 119 NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTD 178
NTPSWYTAGE EYFTDTTTLFIVE+IFIGWAEGRRWADI+KPG VNTDPIFPNNKLTGTD
Sbjct: 133 NTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTD 192
Query: 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIA 238
VGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL A
Sbjct: 193 VGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFA 252
Query: 239 HLADPGHATVFAAFTPK 255
HLADPGHATVFAAFTPK
Sbjct: 253 HLADPGHATVFAAFTPK 269
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/270 (80%), Positives = 235/270 (87%), Gaps = 16/270 (5%)
Query: 1 MASVCASPAVAAISSPSS--QKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
MA+VCAS A+AA+S SS QK+ S+ G+TKASFL G+KL+LR + RSV+V A
Sbjct: 1 MAAVCASSAIAAVSISSSSSQKTGSLVGSTKASFLRGEKLRLRTYTSPTAARSVTV-CVA 59
Query: 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
ADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAG
Sbjct: 60 ADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
IFIPE LTK+GILNTPSWY+AGE+EYFTDTTTLFIVE+ FIGWAEGRRWADI+KPGCVNT
Sbjct: 120 IFIPEFLTKIGILNTPSWYSAGEVEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNT 179
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQH
Sbjct: 180 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 239
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
IYTGTGPIDNL AHLADPGHATVFAAFTPK
Sbjct: 240 IYTGTGPIDNLFAHLADPGHATVFAAFTPK 269
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/271 (75%), Positives = 226/271 (83%), Gaps = 20/271 (7%)
Query: 1 MASVCASPAV--AAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
MAS CAS A+ AIS+PSS + G FL G+KL+++K A G RS+ + A
Sbjct: 1 MASACASSAITAVAISTPSSGQKNGSGGC----FLSGRKLRVKKERAAIGGRSMGTTVCA 56
Query: 59 -ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
A+P+RPLWFPGSTPP WLDG+LPGDFGFDPLGL E+VHCRWAMLGAA
Sbjct: 57 VAEPDRPLWFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAA 116
Query: 105 GIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
GIFIPE LTK+G+LNTPSWY+AGELEYFTDTTTLFIVE+ FIGWAEGRRWADIIKPGCVN
Sbjct: 117 GIFIPEFLTKIGVLNTPSWYSAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVN 176
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
TDPIFPNNKLTGTDVGYPGGLWFDPLGWG+GSP+K+K+LRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 177 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAMLAVMGAWFQ 236
Query: 225 HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
HIYT TGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 237 HIYTATGPIDNLFAHLADPGHATIFAAFTPK 267
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/254 (80%), Positives = 218/254 (85%), Gaps = 16/254 (6%)
Query: 16 PSSQKSRSVAGATKASFLGGKKLKLRKN-GATAGTRSVSVSAAAADPNRPLWFPGSTPPE 74
PSSQK+ S G +KA FLG +KLK+ N A RS + AAA+P+RPLWFPGSTPP
Sbjct: 17 PSSQKNGSPMGTSKA-FLG-RKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPP 74
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTP 121
WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAGIFIPE LTK+GILNTP
Sbjct: 75 WLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTP 134
Query: 122 SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 181
SWYTAGE EYFTDTTTLFIVE+IFIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDVGY
Sbjct: 135 SWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGY 194
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLA
Sbjct: 195 PGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 254
Query: 242 DPGHATVFAAFTPK 255
DPGHAT+FAAFTPK
Sbjct: 255 DPGHATIFAAFTPK 268
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/254 (79%), Positives = 216/254 (85%), Gaps = 16/254 (6%)
Query: 16 PSSQKSRSVAGATKASFLGGKKLKLRKN-GATAGTRSVSVSAAAADPNRPLWFPGSTPPE 74
PSSQK+ S G +KA G+KLK+ N A RS + AAA+P+RPLWFPGSTPP
Sbjct: 17 PSSQKNGSPMGTSKA--FPGRKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPP 74
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTP 121
WLDGSLPGDFGFDPLGL E+VHCRWAMLGAAGIFIPE LTK+GILNTP
Sbjct: 75 WLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTP 134
Query: 122 SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 181
SWYTAGE EYFTDTTTLFIVE+IFIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDVGY
Sbjct: 135 SWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGY 194
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLA
Sbjct: 195 PGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 254
Query: 242 DPGHATVFAAFTPK 255
DPGHAT+FAAFTPK
Sbjct: 255 DPGHATIFAAFTPK 268
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/243 (83%), Positives = 213/243 (87%), Gaps = 18/243 (7%)
Query: 30 ASFLGGKKLKLRKNGATA----GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFG 85
++FL GKKL+LR A A R+V V AAADP+RPLWFPGSTPP WLDGSLPGDFG
Sbjct: 30 SNFLTGKKLRLRNLNAAATAVVAPRTVPV-CAAADPDRPLWFPGSTPPPWLDGSLPGDFG 88
Query: 86 FDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF 132
FDPLGL E+VHCRWAMLGAAGIFIPE LTK+GILNTPSWYTAGELEYF
Sbjct: 89 FDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYF 148
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 192
TDTTTLFIVE+IFIGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW
Sbjct: 149 TDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 208
Query: 193 GSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
GSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHATVFAAF
Sbjct: 209 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 268
Query: 253 TPK 255
TPK
Sbjct: 269 TPK 271
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/273 (72%), Positives = 220/273 (80%), Gaps = 19/273 (6%)
Query: 2 ASVCASPAV--AAISSPSSQKSRSV----AGATKASFLGGKKLKLRKNGATAGTRSVSVS 55
A VCAS +V A + +PSS +++ GA KASFL G+ + LR+ A R+
Sbjct: 6 AVVCASSSVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRRAAVTV 65
Query: 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
+ A RPLWFPG+TPP WLDGSLPGDFGFDPLGL E+VHCRWAMLG
Sbjct: 66 SQAVQTERPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLG 125
Query: 103 AAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGC 162
AAGIFIPEL TKLGILNTPSWYTAGELEYFTD TTLF+VEMIF+GWAEGRRWADI++PG
Sbjct: 126 AAGIFIPELCTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWADILEPGS 185
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAW
Sbjct: 186 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 245
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
FQ YTGTGPIDNL+AHLADPGHAT+FAAF+ K
Sbjct: 246 FQAEYTGTGPIDNLLAHLADPGHATIFAAFSSK 278
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/255 (78%), Positives = 218/255 (85%), Gaps = 16/255 (6%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGAT-AGTRSVSVSAAAADPNRPLWFPGSTPP 73
+PSSQK+ S +G +KA FLG +KLK+ + A+ + RS S A+P+RPLWFPGSTPP
Sbjct: 17 TPSSQKNGSPSGTSKA-FLG-RKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPP 74
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNT 120
WLDGSLPGDFGFDPLGL E+VH RWAMLGAAGIFIPE LTKLGILNT
Sbjct: 75 PWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNT 134
Query: 121 PSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
PSWYTAGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDVG
Sbjct: 135 PSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVG 194
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGGLWFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHL
Sbjct: 195 YPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHL 254
Query: 241 ADPGHATVFAAFTPK 255
ADPGHAT+FAAFTPK
Sbjct: 255 ADPGHATIFAAFTPK 269
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/240 (82%), Positives = 209/240 (87%), Gaps = 15/240 (6%)
Query: 31 SFLGGKKLKLRKNGAT-AGTRSVS-VSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDP 88
SFLGGKKL+L+ + A +RS + V A AADP RP+WFPGSTPPEWLDGSLPGDFGFDP
Sbjct: 17 SFLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDP 76
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT 135
LGL E+VHCRWAMLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD
Sbjct: 77 LGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK 136
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 195
TTLF+VE+I IGWAEGRRWADIIKPG VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG
Sbjct: 137 TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 196
Query: 196 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
SP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 197 SPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 256
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/280 (72%), Positives = 218/280 (77%), Gaps = 42/280 (15%)
Query: 16 PSSQKSRSVAGATKASFLGGKKLKLRKN-GATAGTRSVSVSAAAADPNRPLWFPGSTPPE 74
PSSQK+ S G +KA FLG +KLK+ N A RS + AAA+P+RPLWFPGSTPP
Sbjct: 17 PSSQKNGSPMGTSKA-FLG-RKLKVNSNIAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPP 74
Query: 75 WLDGSLPGDFGFDPLGL---------------------------------------EIVH 95
WLDGSLPGDFGFDPLGL E+VH
Sbjct: 75 WLDGSLPGDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTASDPESLKWNVQAELVH 134
Query: 96 CRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWA 155
CRWAMLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTDTTTLFIVE+IFIGWAEGRRWA
Sbjct: 135 CRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWA 194
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
DI+ PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAM
Sbjct: 195 DILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAM 254
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
LAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 255 LAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 294
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/243 (79%), Positives = 206/243 (84%), Gaps = 13/243 (5%)
Query: 26 GATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFG 85
GA KASFL G+ + LR++ A R+ + + A RPLWFPG+TPP WLDGSLP DFG
Sbjct: 36 GAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFG 95
Query: 86 FDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF 132
FDPLGL E+VHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF
Sbjct: 96 FDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF 155
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 192
TD TTLF+VEMIF+GWAEGRRWADIIKPG VNTDPIFPNNKLTGTDVGYPGGLWFDPLGW
Sbjct: 156 TDKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 215
Query: 193 GSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
GSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQ YTGTGPIDNL+AHLADPGHATVFAAF
Sbjct: 216 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAF 275
Query: 253 TPK 255
+ K
Sbjct: 276 SSK 278
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/243 (78%), Positives = 205/243 (84%), Gaps = 13/243 (5%)
Query: 26 GATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFG 85
GA KASFL G+ + LR++ A R+ + + A RPLWFPG+TPP WLDGSLP DFG
Sbjct: 36 GAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFG 95
Query: 86 FDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF 132
FDPLGL E+VHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE EYF
Sbjct: 96 FDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYF 155
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 192
TD TTLF+VEMIF+GWAEGRRWADIIKPG VNTDPIFPNNKLTGTDVGYPGGLWFDPLGW
Sbjct: 156 TDKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 215
Query: 193 GSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
GSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQ YTGTGPIDNL+AHLADPGHATVFAAF
Sbjct: 216 GSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAF 275
Query: 253 TPK 255
+ K
Sbjct: 276 SSK 278
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/273 (72%), Positives = 221/273 (80%), Gaps = 28/273 (10%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKAS-FLGGK----KLKLRKNGATAGTRSVSVS 55
MA V AS + A+++ + GA +AS FLGG +L LR+ +++ S +V
Sbjct: 1 MALVSASSSTTAVAA--------LPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVR 52
Query: 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
AAA P+RP+WFPGSTPP WLDGSLPGDFGFDPLGL E+VHCRWAMLG
Sbjct: 53 AAA--PDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 110
Query: 103 AAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGC 162
AAGIFIPE LTK+GILNTPSWYTAGE +YFTDTTTLFI+E+I IGWAEGRRWADIIKPGC
Sbjct: 111 AAGIFIPEFLTKIGILNTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGC 170
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG+GSPEK+KELRTKEIKNGRLAMLAVMGAW
Sbjct: 171 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAW 230
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
FQ YTGTGPIDNL AHLADPGHAT+F AFTPK
Sbjct: 231 FQAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 263
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/256 (77%), Positives = 217/256 (84%), Gaps = 18/256 (7%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGAT-AGTRSVSVSAAAADPNRPLWFPGSTPP 73
+PSSQK+ S +G +KA FLG +KLK+ + A+ + RS S A+P+RPLWFPGSTPP
Sbjct: 17 TPSSQKNGSPSGTSKA-FLG-RKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPP 74
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNT 120
WLDGSLPGDFGFDPLGL E+VH RWAMLGAAGIFIPE LTKLGILNT
Sbjct: 75 PWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNT 134
Query: 121 PSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
PSWYTAGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDVG
Sbjct: 135 PSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVG 194
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI-AH 239
YPGGLWFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AH
Sbjct: 195 YPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAH 254
Query: 240 LADPGHATVFAAFTPK 255
LADP HAT+FAAFTPK
Sbjct: 255 LADP-HATIFAAFTPK 269
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/240 (80%), Positives = 202/240 (84%), Gaps = 15/240 (6%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVSVSAAAA--DPNRPLWFPGSTPPEWLDGSLPGDFGFDP 88
SFL GKKL+L K + + S A DP RP+WFPGSTPPEWLDGSLPGDFGFDP
Sbjct: 17 SFLAGKKLRLNKKLSVPAVSKSAASVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDP 76
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT 135
LGL EIVHCRWAMLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD
Sbjct: 77 LGLSSDPESLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK 136
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 195
TTLF+VE+I IGWAEGRRWADIIKPG VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG
Sbjct: 137 TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 196
Query: 196 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
SP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 197 SPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 256
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/219 (84%), Positives = 195/219 (89%), Gaps = 13/219 (5%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHC 96
+ SV A AADP+RP+WFPGSTPPEWLDGSLPGDFGFDPLGL EIVHC
Sbjct: 39 QDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHC 98
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWAD 156
RWAMLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD TTLF+VE+I IGWAEGRRWAD
Sbjct: 99 RWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWAD 158
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
IIKPG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAML
Sbjct: 159 IIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
AVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 219 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/216 (86%), Positives = 194/216 (89%), Gaps = 13/216 (6%)
Query: 53 SVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWA 99
SV A AADP+RP+WFPGSTPPEWLDGSLPGDFGFDPLGL EIVHCRWA
Sbjct: 42 SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWA 101
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD TTLF+VE+I IGWAEGRRWADIIK
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIK 161
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVM
Sbjct: 162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
GAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 222 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/240 (80%), Positives = 201/240 (83%), Gaps = 15/240 (6%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVSVSAAAA--DPNRPLWFPGSTPPEWLDGSLPGDFGFDP 88
SFL GKKL+L K + A + S A DP RP+WFPGSTPPEWLDGSLPGDFGFDP
Sbjct: 17 SFLCGKKLRLNKKLSVAAVSKSAASVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDP 76
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT 135
LGL EIVHCRWAMLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD
Sbjct: 77 LGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK 136
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 195
TTLF+VE+I IGWAEGRRWADIIKPG VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG
Sbjct: 137 TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 196
Query: 196 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
SP K+KELRTKEIKNGRL MLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF PK
Sbjct: 197 SPAKIKELRTKEIKNGRLTMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFPPK 256
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/216 (85%), Positives = 194/216 (89%), Gaps = 13/216 (6%)
Query: 53 SVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWA 99
SV A AADP+RP+WFPGSTPPEWLDGSLPGDFGFDPLGL E+VHCRWA
Sbjct: 42 SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWA 101
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD TTLF+VE+I IGWAEGRRWADIIK
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIK 161
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVM
Sbjct: 162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
GAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 222 GAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/244 (77%), Positives = 203/244 (83%), Gaps = 18/244 (7%)
Query: 25 AGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDF 84
A + SFLG + KLR+ A S +VSAAA P+RP+WFPGS PP WLDGSLPGDF
Sbjct: 24 AAGARTSFLGAGRTKLRE---AAARPSFAVSAAA--PDRPIWFPGSVPPPWLDGSLPGDF 78
Query: 85 GFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY 131
GFDP GL E+VHCRWAMLGAAGIFIPE LTK+GIL+TPSWYTAGE +Y
Sbjct: 79 GFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILSTPSWYTAGEQQY 138
Query: 132 FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 191
FTDTTTLFI+E+I IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG
Sbjct: 139 FTDTTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 198
Query: 192 WGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 251
WGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQ YTGTGPIDNL AHLADPGHA +F A
Sbjct: 199 WGSGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQA 258
Query: 252 FTPK 255
FTPK
Sbjct: 259 FTPK 262
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/266 (71%), Positives = 211/266 (79%), Gaps = 14/266 (5%)
Query: 3 SVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPN 62
+VCAS +A S S+QK + + K +FLGG+ L+ + + A A SV+AAAA
Sbjct: 4 AVCASSTIAVAPSSSAQKKPNEIVSAKTTFLGGRPLRNKAHVAKAAKAVFSVTAAAAT-E 62
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
RPLWFPGSTPP WLDGSLP DFGFDPLGL EIVH RWAMLGAAGIFIP
Sbjct: 63 RPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIP 122
Query: 110 ELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
E LTKLGILNTP WYTAGE EYFTD TTLFIVEMI +GWAEGRRWADI+KPG VNTDP+F
Sbjct: 123 EALTKLGILNTPFWYTAGEQEYFTDQTTLFIVEMILLGWAEGRRWADILKPGSVNTDPVF 182
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
PNNKLTGTDVGYPGG WFDP GWG+ SPEK+KELRTKEIKNGRLAMLAVMGAWFQ +YTG
Sbjct: 183 PNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQAVYTG 242
Query: 230 TGPIDNLIAHLADPGHATVFAAFTPK 255
PIDNL+AHLADPGHAT+F+AFT +
Sbjct: 243 ARPIDNLLAHLADPGHATIFSAFTSQ 268
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/239 (79%), Positives = 204/239 (85%), Gaps = 17/239 (7%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPL 89
+SFLGGK L LR+ A A S +V AAA DPNRP+WFPGSTPP WLDGSLPGDFGFDP
Sbjct: 26 SSFLGGKTL-LRQ--AEAARPSFAVRAAA-DPNRPIWFPGSTPPPWLDGSLPGDFGFDPW 81
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT 136
GL E+VHCRWAMLGAAGIFIPE LTK+G+LNTP WYTAGE +YFTDTT
Sbjct: 82 GLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDTT 141
Query: 137 TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 196
TLFI+E+I IGWAEGRRWADIIKPG VNTDPIFP+NKLTGTDVGYPGGLWFDPLGWGSGS
Sbjct: 142 TLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGS 201
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
PEK+KELRTKEIKNGRLAMLAVMGAWFQ YTGTGPIDNL AHLADPGHAT+F AFTPK
Sbjct: 202 PEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 260
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/266 (71%), Positives = 210/266 (78%), Gaps = 14/266 (5%)
Query: 3 SVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPN 62
+VCAS +A S S+QK + + K +FL G+ L+ + + A A SV+AAAA
Sbjct: 4 AVCASSTIAVAPSSSAQKKPNEIVSAKTTFLAGRPLRNKAHVAKAAKAVFSVTAAAAT-E 62
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
RPLWFPGSTPP WLDGSLP DFGFDPLGL EIVH RWAMLGAAGIFIP
Sbjct: 63 RPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIP 122
Query: 110 ELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
E LTKLGILNTP WYTAGE EYFTD TTLFIVEMI +GWAEGRRWADI+KPG VNTDP+F
Sbjct: 123 EALTKLGILNTPFWYTAGEQEYFTDQTTLFIVEMILLGWAEGRRWADILKPGSVNTDPVF 182
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
PNNKLTGTDVGYPGG WFDP GWG+ SPEK+KELRTKEIKNGRLAMLAVMGAWFQ +YTG
Sbjct: 183 PNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQAVYTG 242
Query: 230 TGPIDNLIAHLADPGHATVFAAFTPK 255
PIDNL+AHLADPGHAT+F+AFT +
Sbjct: 243 ARPIDNLLAHLADPGHATIFSAFTSQ 268
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/264 (70%), Positives = 205/264 (77%), Gaps = 18/264 (6%)
Query: 3 SVCASPAVAAIS-SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADP 61
+VC + +A+I+ S S+ K+ S A KA+F G K ++ + S S A
Sbjct: 4 AVCTTSRIASIAPSTSATKAVSSGSAVKAAFFG----KTLRSAKVSAVSKASFSVRAQAT 59
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
RPLWFPGST PEWLDGSLPGDFGFDPLGL EIVHCRWAMLGAAGIFI
Sbjct: 60 ERPLWFPGSTAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFI 119
Query: 109 PELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
PELLTK+GILNTPSWYTAGE YF D TTLFIVE++F+GWAEGRRWADI+KPG VNTDP+
Sbjct: 120 PELLTKIGILNTPSWYTAGEQTYFADQTTLFIVELLFMGWAEGRRWADILKPGSVNTDPV 179
Query: 169 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
FPNNKLTGTDVGYPGG WFDPLGWG+G KVKELRTKEIKNGRLAMLAVMGAWFQ +YT
Sbjct: 180 FPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAWFQAVYT 239
Query: 229 GTGPIDNLIAHLADPGHATVFAAF 252
GTGPIDNL AHLADPGHATVFAA
Sbjct: 240 GTGPIDNLFAHLADPGHATVFAAL 263
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/248 (77%), Positives = 204/248 (82%), Gaps = 22/248 (8%)
Query: 21 SRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSL 80
S +AGA + SFLG G A +R+ S + AA P RP+WFPGSTPP WLDGSL
Sbjct: 17 SNGLAGA-RTSFLGAA-------GKAAASRT-SFAVRAAAPERPIWFPGSTPPPWLDGSL 67
Query: 81 PGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG 127
PGDFGFDP GL E+VHCRWAMLGAAGIFIPELLTK+GILNTPSWYTAG
Sbjct: 68 PGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAG 127
Query: 128 ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
E EYFTDTTTLFIVE+I IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 128 EQEYFTDTTTLFIVELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
Query: 188 DPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
DPLG+G+GSPEK+KELRTKEIKNGRLAMLAVMGAWFQ YTGTGPIDNL AHLADPGHAT
Sbjct: 188 DPLGYGTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHAT 247
Query: 248 VFAAFTPK 255
+F AF PK
Sbjct: 248 IFRAFAPK 255
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/248 (76%), Positives = 202/248 (81%), Gaps = 24/248 (9%)
Query: 21 SRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSL 80
S +AGA + SFLG K A TRS S + A P RP+WFPGSTPP WLDGSL
Sbjct: 17 SNGLAGA-RTSFLGTGK---------AATRS-SFTVRTAAPERPIWFPGSTPPPWLDGSL 65
Query: 81 PGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG 127
PGDFGFDP GL E+VHCRWAMLGAAGIFIPELLTK+GILNTPSWYTAG
Sbjct: 66 PGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAG 125
Query: 128 ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
E EYFTDTTTLF+VE+I IGWAEGRRWADIIKPG VNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 126 EQEYFTDTTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWF 185
Query: 188 DPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
DPLG+G+GSPEK+KELRTKEIKNGRLAMLAVMGAWFQ YTGTGPIDNL AHLADPGHAT
Sbjct: 186 DPLGYGNGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHAT 245
Query: 248 VFAAFTPK 255
+F AF PK
Sbjct: 246 IFRAFAPK 253
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 365 bits (938), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 183/232 (78%), Positives = 196/232 (84%), Gaps = 16/232 (6%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
K LR+ A A S +V AAA D +RP+WFPGSTPP WLDGSLPGDFGFDP GL
Sbjct: 42 KTLLRQ--AEAARPSFAVRAAA-DSDRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPE 98
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEM 143
E+VHCRWAMLGAAGIFIPE LTK+G+LNTP WYTAGE +YFTDTTTLFI+E+
Sbjct: 99 SLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDTTTLFIIEL 158
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
I IGWAEGRRWADIIKPG VNTDPIFP+NKLTGTDVGYPGGLWFDPLGWGSGSPEK+KEL
Sbjct: 159 ILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKEL 218
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
RTKEIKNGRLAMLAVMGAWFQ YTGTGPIDNL AHLADPGHAT+F AFTPK
Sbjct: 219 RTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 270
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 179/216 (82%), Positives = 187/216 (86%), Gaps = 13/216 (6%)
Query: 53 SVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWA 99
S + AA P RP+WFPGSTPP WLDGSLPGDFGFDP GL E+VHCRWA
Sbjct: 43 SFAVRAAAPERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWA 102
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLGAAGIFIPELLTK+GILNTPSWYTAGE YF DTTTLFIVE+I IGWAEGRRWADIIK
Sbjct: 103 MLGAAGIFIPELLTKIGILNTPSWYTAGEQTYFADTTTLFIVELILIGWAEGRRWADIIK 162
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG+GSGSPEK+KELRTKEIKNGRLAMLAVM
Sbjct: 163 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAMLAVM 222
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
GAWFQ YTGTGPIDNL AHLADPGHAT+F AFTP
Sbjct: 223 GAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFTPN 258
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/270 (64%), Positives = 201/270 (74%), Gaps = 22/270 (8%)
Query: 2 ASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGA-TAGTRSVSVSAAAAD 60
++VCA P V +I++ SS K + +TKASF G+ L++ K A T G ++S AA +
Sbjct: 3 SAVCAKPCVGSIAATSSSKFETNVASTKASFFSGRALRMTKVAAYTNGDMTISAVAAPQN 62
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------------EIVHCRWAML 101
RPLWFPGS PEWLDGSLPGDFGFDPLGL E+VHCRWAML
Sbjct: 63 -ERPLWFPGSQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAML 121
Query: 102 GAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
GAAGIFIPE LTK+GILNTPSW AG+ +YFTD TTLF++E+I WAEGRRWADI+ PG
Sbjct: 122 GAAGIFIPEALTKMGILNTPSWTVAGDADYFTDKTTLFVIELILFAWAEGRRWADIVNPG 181
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS-PEKVKELRTKEIKNGRLAMLAVMG 220
CVN DP+FPNNKLTGTDVGYPGGLWFDPLGWG S K+K+LRT+EIKNGRLAMLAV+G
Sbjct: 182 CVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAMLAVLG 241
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
A Q YT TGPIDNL+AHL DPGH T+FA
Sbjct: 242 AIVQANYTHTGPIDNLVAHLVDPGHNTIFA 271
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 177/261 (67%), Positives = 203/261 (77%), Gaps = 21/261 (8%)
Query: 14 SSPSSQKSRSVAGATKAS-FLGGK----KLKLRKNGATAGTRSVSVSAAAADPNRPLWFP 68
+S S ++ GA +AS FLGG +L LR+ +++ S +V AAA P+RP+WFP
Sbjct: 7 NSSSFTAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA--PDRPIWFP 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
GSTPP WLDGSLPGDFGFDPLGL ++VHCRWAMLGAAGIFIPE LTK+
Sbjct: 65 GSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAGIFIPEFLTKI 124
Query: 116 GILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADII-KPGCVNTDPIFPNNKL 174
GILNTPSWYTAGE +YFTDTTTLFI+E+I IGWAEGRRWADII PGCVNTDPIFP ++
Sbjct: 125 GILNTPSWYTAGEHQYFTDTTTLFIIELILIGWAEGRRWADIIINPGCVNTDPIFPQQQV 184
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
G G P GLW DPLGWG+ SPEK+KELRTKEIKNGR+AMLAVMGAWFQ +TGTGPID
Sbjct: 185 HGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKEIKNGRVAMLAVMGAWFQAEHTGTGPID 244
Query: 235 NLIAHLADPGHATVFAAFTPK 255
N AH+ADPGHAT+F AFTPK
Sbjct: 245 NFFAHVADPGHATIFQAFTPK 265
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 169/264 (64%), Positives = 199/264 (75%), Gaps = 15/264 (5%)
Query: 2 ASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRS-VSVSAAAAD 60
++VCAS VA ++ PS+ K + AG + S L G+ ++ + A+ + V + +
Sbjct: 3 SAVCASSNVAVVAGPSTSKVVNSAGPARTSLLAGRVRRVTRIAASPQAEAPVPAQPSLPN 62
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+RPLWFPGS PPEWLDGSLPGDFGFDPLGL E+VHCRWAMLGAAGIF
Sbjct: 63 NDRPLWFPGSQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIF 122
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE LTK GILNTPSW AG+ +YFTD TTLF++E+I WAEGRRWADII PGCVN DP
Sbjct: 123 IPEALTKAGILNTPSWTVAGDQQYFTDATTLFVIEIILFAWAEGRRWADIINPGCVNVDP 182
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWG-SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
+FPNNKLTGTDVGYPGGLWFDPLGWG +G K+K+LRT+EIKNGRLAMLAV+GA Q
Sbjct: 183 VFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAMLAVLGAVVQAN 242
Query: 227 YTGTGPIDNLIAHLADPGHATVFA 250
YT TGPIDNL+AHLADPGH T+FA
Sbjct: 243 YTHTGPIDNLLAHLADPGHNTIFA 266
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 161/186 (86%), Positives = 167/186 (89%), Gaps = 13/186 (6%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
PEWLDGSLPGDFGFDPLGL E+VH RWAMLGAAGIFIPE LTKLGILN
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 120 TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
TPSWYTAGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDV
Sbjct: 61 TPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDV 120
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
GYPGGLWFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AH
Sbjct: 121 GYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAH 180
Query: 240 LADPGH 245
LADPGH
Sbjct: 181 LADPGH 186
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 159/251 (63%), Positives = 185/251 (73%), Gaps = 14/251 (5%)
Query: 16 PSSQKSRSVAGATKASFLGGKKLKLRK-NGATAGTRSVSVSAAAADPNRPLWFPGSTPPE 74
P + K S G+ + SFL G+ L+ + GA G +VS + +RPLW PGS P+
Sbjct: 17 PPTSKVVSNVGSARTSFLAGRALRTTQVCGAAKGDMTVSATLTGNKTDRPLWLPGSEAPK 76
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTP 121
WLDGSLPGD+GFDPL L E+VHCRWAMLGAAGIFIPELLTK+GILNTP
Sbjct: 77 WLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTKIGILNTP 136
Query: 122 SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 181
SWY AG+ YF D TLFIVE++ + WAE RRWADI +PG VNTDPIFPNNKLTGTDVGY
Sbjct: 137 SWYKAGDATYFADQGTLFIVELLLMAWAESRRWADIARPGSVNTDPIFPNNKLTGTDVGY 196
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PGGLWFDPLGWGSGS +K+KE+RTKE+KNGRLAMLAV+GA+ Q T GPIDNL AHLA
Sbjct: 197 PGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAVLGAFVQANVTHVGPIDNLFAHLA 256
Query: 242 DPGHATVFAAF 252
DP H T+ +
Sbjct: 257 DPYHTTILQSL 267
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 322 bits (826), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 151/164 (92%), Positives = 158/164 (96%)
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEG 151
E+VH RWAMLGAAGIFIPE LTKLGILNTPSWYTAGE EYFTDTTTLFIVE++FIGWAEG
Sbjct: 13 ELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEG 72
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
RRWADI+ PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS SP+K+KELRTKEIKNG
Sbjct: 73 RRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNG 132
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
RLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 133 RLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 176
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/203 (74%), Positives = 166/203 (81%), Gaps = 14/203 (6%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
+RPLWFPGS PEWLDGSLPGDFGFDPLGL E+VHCRWAMLGAAGIFI
Sbjct: 1 DRPLWFPGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFI 60
Query: 109 PELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
PE LTK GILNTPSW AG+ +YF D TTLF++E+I WAEGRRWADI+ PGCVN DP+
Sbjct: 61 PEALTKAGILNTPSWNVAGDQQYFADPTTLFVIELILFAWAEGRRWADIVNPGCVNVDPV 120
Query: 169 FPNNKLTGTDVGYPGGLWFDPLGWG-SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
FPNNKLTGTDVGYPGGLWFDPLGWG + +K+KELRTKEIKNGRLAMLAV+GA Q Y
Sbjct: 121 FPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAMLAVLGAVVQANY 180
Query: 228 TGTGPIDNLIAHLADPGHATVFA 250
T TGPIDNL+AHLADPGH T+FA
Sbjct: 181 THTGPIDNLLAHLADPGHNTIFA 203
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 307 bits (786), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/216 (68%), Positives = 168/216 (77%), Gaps = 13/216 (6%)
Query: 51 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCR 97
+VS + +RPLW PGS P+WLDGSLPGD+GFDPL L E+VHCR
Sbjct: 2 TVSATLTGNKTDRPLWLPGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCR 61
Query: 98 WAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
WAMLGAAGIFIPELLTK+GILNTPSWY AG+ YF D TLFIVE++ + WAE RRWADI
Sbjct: 62 WAMLGAAGIFIPELLTKIGILNTPSWYKAGDATYFADQGTLFIVELLLMAWAESRRWADI 121
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
+PG VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS +K+KE+RTKE+KNGRLAMLA
Sbjct: 122 ARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLA 181
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
V+GA+ Q T GPIDNL AHLADP H T+ + +
Sbjct: 182 VLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVS 217
>gi|255638199|gb|ACU19413.1| unknown [Glycine max]
Length = 156
Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 143/156 (91%), Positives = 152/156 (97%)
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLGAAGIFIPE LTK+G+LNTPSWY+AGELEYFTDTTTLFIVE+ FIGWAEGRRWADIIK
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPSWYSAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIK 60
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG+GSP+K+K+LRTKEIKNGRLAMLAVM
Sbjct: 61 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAMLAVM 120
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
GAWFQHIYT TGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 121 GAWFQHIYTATGPIDNLFAHLADPGHATIFAAFTPK 156
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/192 (77%), Positives = 160/192 (83%), Gaps = 15/192 (7%)
Query: 31 SFLGGKKLKLRKNGAT-AGTRSVS-VSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDP 88
SFLGGKKL+L+ + A +RS + V A AADP RP+WFPGSTPPEWLDGSLPGDFGFDP
Sbjct: 23 SFLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTPPEWLDGSLPGDFGFDP 82
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT 135
LGL E+VHCRWAMLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD
Sbjct: 83 LGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK 142
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 195
TTLF+VE+I IGWAEGRRWADIIKPG VNTDPIFPNNKLTGTDVGYPGGLWFDPL WGSG
Sbjct: 143 TTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLVWGSG 202
Query: 196 SPEKVKELRTKE 207
SP K+KELRTK
Sbjct: 203 SPAKIKELRTKR 214
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 184/267 (68%), Gaps = 22/267 (8%)
Query: 1 MASVCASPAVAAISSPSSQK-SRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA 59
MA AS +++++ + + K +S+ G + + +K+R N T+ VS
Sbjct: 1 MALNFASSSLSSLPTRTRDKPQKSLLGKIEKC----QAVKVRVNA----TKGVSSVCEPL 52
Query: 60 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL E++H RWAML AAGI
Sbjct: 53 PPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGI 112
Query: 107 FIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
IPE L +LG ++ +W+ AG EYF D TTLF+V++I +GW EGRRWAD+IKPGCV+ D
Sbjct: 113 LIPEWLERLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWADMIKPGCVDID 172
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
P P+ DVGYPGGLWFDP WG GSPE V +RTKEIKNGRLAMLA +G WFQ I
Sbjct: 173 PKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAI 232
Query: 227 YTGTGPIDNLIAHLADPGHATVFAAFT 253
YTG GPIDNL+AH+ADPGH +F+AFT
Sbjct: 233 YTGEGPIDNLMAHIADPGHCNIFSAFT 259
>gi|194689644|gb|ACF78906.1| unknown [Zea mays]
Length = 156
Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 139/156 (89%), Positives = 147/156 (94%)
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLGAAGIFIPE LTK+G+LNTP WYTAGE +YFTDTTTLFI+E+I IGWAEGRRWADIIK
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIK 60
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PG VNTDPIFP+NKLTGTDVGYPGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVM
Sbjct: 61 PGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVM 120
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
GAWFQ YTGTGPIDNL AHLADPGHAT+F AFTPK
Sbjct: 121 GAWFQAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 156
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 293 bits (749), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 184/267 (68%), Gaps = 22/267 (8%)
Query: 1 MASVCASPAVAAISSPSSQK-SRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA 59
MA AS +++++ + + K +S+ G + + +K+R N T+ VS
Sbjct: 1 MALNFASSSLSSLPTRTRDKPQKSLLGKIEKC----QAVKVRVNA----TKGVSSVCEPL 52
Query: 60 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL E++H RWAML AAGI
Sbjct: 53 PPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGI 112
Query: 107 FIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
IPE L +LG ++ +W+ AG EYF D TTLF+V++I +GW EGRRWAD+IKPGCV+ D
Sbjct: 113 LIPEWLERLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWADMIKPGCVDID 172
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
P P+ D+GYPGGLWFDP WG GSPE V +RTKEIKNGRLAMLA +G WFQ I
Sbjct: 173 PKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAI 232
Query: 227 YTGTGPIDNLIAHLADPGHATVFAAFT 253
YTG GPIDNL+AH+ADPGH +F+AFT
Sbjct: 233 YTGEGPIDNLMAHIADPGHCNIFSAFT 259
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/268 (54%), Positives = 178/268 (66%), Gaps = 22/268 (8%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA +S A++ P+++K V A++L + T + VS
Sbjct: 1 MALSISSTALSTF--PNTEKRHKVFPERTATWLP-------RRIHTNAKKGVSDVCEPLP 51
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
P+RPLWFPGS+PPEWLDGSLPGDFGFDP+GL E++H RWAMLG +GI
Sbjct: 52 PDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGIL 111
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPELL K+G + SWY AG EYF D TTLFIV++ +GW EGRRWAD++ PG V+ +P
Sbjct: 112 IPELLEKMGYVENYSWYEAGTQEYFADPTTLFIVQLALMGWVEGRRWADLVNPGSVDIEP 171
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
PN DVGYPGGLWFDP+ WG GSPE V LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 172 KLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIY 231
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFTPK 255
TG GPI+NL+AHLADPGH +F+AFT +
Sbjct: 232 TGQGPIENLMAHLADPGHCNIFSAFTSR 259
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 139/230 (60%), Positives = 162/230 (70%), Gaps = 16/230 (6%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
K K++ N G VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL
Sbjct: 69 KAKVKLNATKGG---VSTVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 125
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEM 143
E++H RWAML AGI IPE L LG + +W+ AG EYF D TTLFIV++
Sbjct: 126 LLKWFAQAELMHSRWAMLAVAGILIPEWLESLGFIENYNWFDAGAREYFADPTTLFIVQL 185
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
+ +GW EGRRWAD+IKPGCV+ +P PN DVGYPGGLWFDPL WG GSPE V L
Sbjct: 186 VLMGWVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMVL 245
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
RTKEIKNGRLAMLA +G FQ +YTG GPI+NL+AH+ADPGH +F+AFT
Sbjct: 246 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFT 295
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/229 (59%), Positives = 160/229 (69%), Gaps = 13/229 (5%)
Query: 38 LKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------ 91
L L + T+ VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL
Sbjct: 31 LSLTRRTVAYATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPEL 90
Query: 92 -------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMI 144
E++H RWAML GI +PELL K+G + SWY AG EYF D TTLF+V+M
Sbjct: 91 LKWFAQAELMHARWAMLAVFGILVPELLEKIGYIENFSWYDAGAREYFVDPTTLFVVQMG 150
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+GW EGRRWAD++ PG V+ +P P+ DVGYPGGLWFDP+ WG GSPE V LR
Sbjct: 151 LMGWVEGRRWADMVNPGSVDIEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLR 210
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
TKEIKNGRLAMLA +G WFQ IYTG GPI+NL+AHLADPGH +F+AFT
Sbjct: 211 TKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 137/229 (59%), Positives = 160/229 (69%), Gaps = 13/229 (5%)
Query: 38 LKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------ 91
L L + T+ VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL
Sbjct: 31 LSLTRRTIANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPEL 90
Query: 92 -------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMI 144
E++H RWAML GI +PELL ++G + SWY AG EYF D TTLF+V+M
Sbjct: 91 LKWFAQAELMHSRWAMLAVFGILVPELLERIGYIENFSWYDAGTREYFVDPTTLFVVQMG 150
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+GW EGRRWADI+ PG V+ +P P+ DVGYPGGLWFDP+ WG GSPE V LR
Sbjct: 151 LMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLR 210
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
TKEIKNGRLAMLA +G WFQ IYTG GPI+NL+AHLADPGH +F+AFT
Sbjct: 211 TKEIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 150/243 (61%), Positives = 163/243 (67%), Gaps = 58/243 (23%)
Query: 26 GATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFG 85
GA KASFL G+ + LR++ A R+ + + A RPLWFPG+TPP WLDGSLP DFG
Sbjct: 36 GAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFG 95
Query: 86 FDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF 132
FDPLGL E+VHCRWAMLGAAGIFIPELLTKLGILN
Sbjct: 96 FDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN------------- 142
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 192
TDPIFPNNKLTGTDVGYPGGLWFDPLGW
Sbjct: 143 --------------------------------TDPIFPNNKLTGTDVGYPGGLWFDPLGW 170
Query: 193 GSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
GSGSPEK+KELRTKEIKNGRLAML+VMGAWFQ YTGTGPIDNL+AHLADPGHATVFAAF
Sbjct: 171 GSGSPEKIKELRTKEIKNGRLAMLSVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAF 230
Query: 253 TPK 255
+ K
Sbjct: 231 SSK 233
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/220 (61%), Positives = 156/220 (70%), Gaps = 13/220 (5%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVH 95
T+ VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL E++H
Sbjct: 40 TKGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMH 99
Query: 96 CRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWA 155
RWAML AGI IPE L +LG + SWY AG E+F D TTLF+V++ +GW EGRRWA
Sbjct: 100 SRWAMLAVAGILIPECLERLGFIENFSWYDAGAQEFFADPTTLFVVQLALMGWVEGRRWA 159
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
D+I PGCV+ FPN DVGYPGGLWFDP WG GSPE V LRTKEIKNGRLAM
Sbjct: 160 DLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAM 219
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
LA +G FQ IYTG GPI+NL+AH+ADPGH VF+AFT +
Sbjct: 220 LAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ 259
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/220 (61%), Positives = 156/220 (70%), Gaps = 13/220 (5%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVH 95
T+ VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL E++H
Sbjct: 10 TKGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMH 69
Query: 96 CRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWA 155
RWAML AGI IPE L +LG + SWY AG E+F D TTLF+V++ +GW EGRRWA
Sbjct: 70 SRWAMLAVAGILIPECLERLGFIENFSWYDAGAQEFFADPTTLFVVQLALMGWVEGRRWA 129
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
D+I PGCV+ FPN DVGYPGGLWFDP WG GSPE V LRTKEIKNGRLAM
Sbjct: 130 DLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAM 189
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
LA +G FQ IYTG GPI+NL+AH+ADPGH VF+AFT +
Sbjct: 190 LAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ 229
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/260 (56%), Positives = 175/260 (67%), Gaps = 20/260 (7%)
Query: 8 PAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWF 67
P+ A+I +P S GA ASF + R+ AT G VS P+RP+WF
Sbjct: 16 PSGASIHAPRSPPHLK-PGAAAASF---TRTPQRRANATKG--GVSTVCEPLGPDRPIWF 69
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PGS+PP WLDGSLPGDFGFDPLGL E++H RWAML AAGI +P+LL +
Sbjct: 70 PGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLAR 129
Query: 115 LGILNTP-SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
G ++ SW+ AG EYF D TLF+ +M +GWAEGRRWAD ++PGCV+ +P FPN K
Sbjct: 130 WGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFPNRK 189
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
DVGYPGGLWFD WG GSPE V LRTKEIKNGRLAMLA +G WFQ +YTG GPI
Sbjct: 190 NPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPI 249
Query: 234 DNLIAHLADPGHATVFAAFT 253
DNL+AHLADPGH +F+AFT
Sbjct: 250 DNLLAHLADPGHCNIFSAFT 269
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/229 (59%), Positives = 159/229 (69%), Gaps = 13/229 (5%)
Query: 38 LKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------ 91
L L + T+ VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL
Sbjct: 31 LSLTRRTIANATKGVSAVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPEL 90
Query: 92 -------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMI 144
E++H RWAML GI +PELL ++G + SWY AG EYF D TTLF+V+M
Sbjct: 91 LKWFAQAELMHSRWAMLAVFGILVPELLERIGYIENFSWYDAGTREYFVDPTTLFVVQMG 150
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+GW EGRRWADI+ PG V+ +P P+ DVGYPGGLWFDP+ WG GSPE V LR
Sbjct: 151 LMGWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLR 210
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
TKEIKNG LAMLA +G WFQ IYTG GPI+NL+AHLADPGH +F+AFT
Sbjct: 211 TKEIKNGGLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 146/260 (56%), Positives = 175/260 (67%), Gaps = 20/260 (7%)
Query: 8 PAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWF 67
P+ A+I +P S GA ASF + R+ AT G VS P+RP+WF
Sbjct: 16 PSGASIHAPRSPPHLK-PGAAAASF---TRTPQRRANATKG--GVSTVCEPLGPDRPIWF 69
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PGS+PP WLDGSLPGDFGFDPLGL E++H RWAML AAGI +P+LL +
Sbjct: 70 PGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLAR 129
Query: 115 LGILNTP-SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
G ++ SW+ AG EYF D TLF+ +M +GWAEGRRWAD ++PGCV+ +P FPN +
Sbjct: 130 WGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFPNRR 189
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
DVGYPGGLWFD WG GSPE V LRTKEIKNGRLAMLA +G WFQ +YTG GPI
Sbjct: 190 NPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPI 249
Query: 234 DNLIAHLADPGHATVFAAFT 253
DNL+AHLADPGH +F+AFT
Sbjct: 250 DNLLAHLADPGHCNIFSAFT 269
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 133/217 (61%), Positives = 156/217 (71%), Gaps = 13/217 (5%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHC 96
+ VS P+RPLWFPGS+PPEWLDGSLPG+FGFDPLGL E++H
Sbjct: 49 KGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHA 108
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWAD 156
RWAMLG +GI IPE+L K+G + SWY AG +EYF D TTLFIV++ +GW EGRRWAD
Sbjct: 109 RWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWAD 168
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
I+ PG V+ +P PN DVGYPGGLWFDP+ WG GSPE V LRTKEIKNGRLAML
Sbjct: 169 IVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAML 228
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
A +G FQ +Y G PIDNL+AHLADPGH +F+AFT
Sbjct: 229 AFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFT 265
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 140/249 (56%), Positives = 168/249 (67%), Gaps = 17/249 (6%)
Query: 18 SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD 77
+Q+ VA + GG+ ++ R AG + VS P+RPLWFPGS+PPEWLD
Sbjct: 24 TQRRPHVASTSST---GGRLMRERLVVVRAG-KEVSSVCEPLPPDRPLWFPGSSPPEWLD 79
Query: 78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY 124
GSLPGDFGFDPLGL E++H RWAML GI IPE L +LG + SWY
Sbjct: 80 GSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWY 139
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
AG EYF D+TTLF+ +M+ +GWAEGRRWAD+IKPG V+ +P +P+ DVGYPGG
Sbjct: 140 DAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGG 199
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
LWFD + WG GSPE V LRTKEIKNGRLAMLA +G FQ YT PI+NL+AHLADPG
Sbjct: 200 LWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPG 259
Query: 245 HATVFAAFT 253
H VF+AFT
Sbjct: 260 HCNVFSAFT 268
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 140/249 (56%), Positives = 168/249 (67%), Gaps = 17/249 (6%)
Query: 18 SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD 77
+Q+ VA + GG+ ++ R AG + VS P+RPLWFPGS+PPEWLD
Sbjct: 24 TQRRPHVASTSST---GGRLMRERLVVVRAG-KEVSSVCEPLPPDRPLWFPGSSPPEWLD 79
Query: 78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY 124
GSLPGDFGFDPLGL E++H RWAML GI IPE L +LG + SWY
Sbjct: 80 GSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWY 139
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
AG EYF D+TTLF+ +M+ +GWAEGRRWAD+IKPG V+ +P +P+ DVGYPGG
Sbjct: 140 DAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGG 199
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
LWFD + WG GSPE V LRTKEIKNGRLAMLA +G FQ YT PI+NL+AHLADPG
Sbjct: 200 LWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPG 259
Query: 245 HATVFAAFT 253
H VF+AFT
Sbjct: 260 HCNVFSAFT 268
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/227 (60%), Positives = 158/227 (69%), Gaps = 16/227 (7%)
Query: 40 LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
L + GA G VS P+RP+WFPG++PP WLDGSLPGDFGFDPLGL
Sbjct: 47 LHRAGAAKG---VSAVCEPLGPDRPVWFPGTSPPPWLDGSLPGDFGFDPLGLGSEPETLR 103
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFI 146
E++H RWAML AGI IPE+L K G + SWYTAGE EYF D TLFI +M +
Sbjct: 104 WFAQAELMHSRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADPWTLFIAQMALM 163
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
GWAEGRRW D + PG V+ +P FPN K DVGYPGGLWFD WG GSPE V LRTK
Sbjct: 164 GWAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTK 223
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
EIKNGRLAMLA +G WFQ +YTG GP+DNL+AHLADPGH +F+AFT
Sbjct: 224 EIKNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFT 270
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/250 (56%), Positives = 168/250 (67%), Gaps = 18/250 (7%)
Query: 17 SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWL 76
++Q+ VA A+ G ++ R A AG + VS P+RPLWFPGS PPEWL
Sbjct: 23 ATQRRPLVASASPT----GGRMSERLVVARAG-KEVSSVCEPLPPDRPLWFPGSAPPEWL 77
Query: 77 DGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSW 123
DGSLPGDFGFDPLGL E++H RWAML GI IPE L +LG + SW
Sbjct: 78 DGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILIPECLERLGFIENFSW 137
Query: 124 YTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 183
Y AG EYF D+TTLF+ +M+ +GWAEGRRWAD+IKPG V+ +P +P+ DVGYPG
Sbjct: 138 YEAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPG 197
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
GLWFD + WG GSPE V LRTKEIKNGRLAMLA +G FQ YT PI+NL+AHLADP
Sbjct: 198 GLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQATYTSQDPIENLMAHLADP 257
Query: 244 GHATVFAAFT 253
GH VF+AFT
Sbjct: 258 GHCNVFSAFT 267
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 130/231 (56%), Positives = 155/231 (67%), Gaps = 13/231 (5%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---- 91
KL+ + A VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL
Sbjct: 33 HKLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP 92
Query: 92 ---------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVE 142
E++H RWAML AGI +PE LG++ SWY AG EYF D TTL + +
Sbjct: 93 ETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQ 152
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 202
+ +GW EGRRWAD++ PG V+ D P+ K DVGYPGG WFDP+ WG GSPE V
Sbjct: 153 LALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMV 212
Query: 203 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
LRTKEIKNGRLAMLA +G WFQ IYTG GP++NL AH+ADPGH +F+AF+
Sbjct: 213 LRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 263
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/227 (60%), Positives = 161/227 (70%), Gaps = 16/227 (7%)
Query: 41 RKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
R+ AT G VS P+RP+WFPGS+PP WLDGSLPGDFGFDPLGL
Sbjct: 6 RRANATKG--GVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELLRW 63
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTP-SWYTAGELEYFTDTTTLFIVEMIFI 146
E++H RWAML AAGI +P+LL + G ++ SW+ AG EYF D TLF+ +M +
Sbjct: 64 FAQAELMHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALM 123
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
GWAEGRRWAD ++PGCV+ +P FPN K DVGYPGGLWFD WG GSPE V LRTK
Sbjct: 124 GWAEGRRWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTK 183
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
EIKNGRLAMLA +G WFQ +YTG GPIDNL+AHLADPGH +F+AFT
Sbjct: 184 EIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFT 230
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/231 (56%), Positives = 155/231 (67%), Gaps = 13/231 (5%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---- 91
KL+ + A VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL
Sbjct: 33 HKLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP 92
Query: 92 ---------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVE 142
E++H RWAML AGI +PE LG++ SWY AG EYF D TTL + +
Sbjct: 93 ETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQ 152
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 202
+ +GW EGRRWAD++ PG V+ D P+ K DVGYPGG WFDP+ WG GSPE V
Sbjct: 153 LALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMV 212
Query: 203 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
LRTKEIKNGRLAMLA +G WFQ IYTG GP++NL AH+ADPGH +F+AF+
Sbjct: 213 LRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 263
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 165/247 (66%), Gaps = 17/247 (6%)
Query: 18 SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD 77
+Q+ VA + GG+ ++ R AG + VS P+RPLWFPGS+PPEWLD
Sbjct: 24 TQRRPHVASTSST---GGRLMRERLVVVRAG-KEVSSVCEPLPPDRPLWFPGSSPPEWLD 79
Query: 78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY 124
GSLPGDFGFDPLGL E++H RWAML GI IPE L +LG + SWY
Sbjct: 80 GSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWY 139
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
AG EYF D+TTLF+ +M+ +GWAEGRRWAD+IKPG V+ +P +P+ DVGYPGG
Sbjct: 140 DAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGG 199
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
LWFD + WG GSPE V LRTKEIKNGRLAMLA +G FQ YT PI+NL+AHLADPG
Sbjct: 200 LWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPG 259
Query: 245 HATVFAA 251
H VF+
Sbjct: 260 HCNVFSV 266
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 136/230 (59%), Positives = 157/230 (68%), Gaps = 15/230 (6%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
++ + GAT G VS P+RPLWFPGS+PP WLDGSLPGDFGFDPLGL
Sbjct: 35 RMAGHRAGATKG--GVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPE 92
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEM 143
E++H RWAML AAGI +PE+L K G + SW AG +YF D TLF+ +M
Sbjct: 93 LLRWFAQAELMHSRWAMLAAAGILVPEVLEKWGFMEDYSWIDAGARDYFADPWTLFVSQM 152
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
+GWAEGRRWAD + PGCV +P PN + DVGYPGGLWFD WG GSPE V L
Sbjct: 153 ALMGWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVL 212
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
RTKEIKNGRLAMLA +G WFQ +YTG GPIDNL+ HLADPGH VF+AFT
Sbjct: 213 RTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFT 262
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 154/226 (68%), Gaps = 15/226 (6%)
Query: 41 RKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
+ GAT S+S P+RP+WFPG+ PP WLDGSLPGDFGFDPLG
Sbjct: 48 HRTGATKS--SLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRW 105
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIG 147
E++H RWAML AGI IPE+L K G + SWYTAGE EYF D TLF+ +M +G
Sbjct: 106 FAQAELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADPWTLFVTQMALMG 165
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
W EGRRW D + PG V+ +P FPN K DVGYPGGLWFD WG GSPE V LRTKE
Sbjct: 166 WVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKE 225
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
IKNGRLAMLA +G WFQ +YTG GP+DNL AHLADPGH +F+AFT
Sbjct: 226 IKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFT 271
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 144/268 (53%), Positives = 170/268 (63%), Gaps = 21/268 (7%)
Query: 1 MASVCASPAVAAI--SSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
A+ P++ A+ S P Q + + A A GG + GAT S+S
Sbjct: 7 FAACSLRPSIRALHASKPPLQTAGAAAAACAPVRRGGS----HRTGATKS--SLSTVCEP 60
Query: 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP+WFPG+ PP WLDGSLPGDFGFDPLG E++H RWAML AG
Sbjct: 61 LGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAVAG 120
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
I IPE+L K G + SWYTAGE EYF D TLF+ +M +GW EGRRW D + PG V+
Sbjct: 121 ILIPEILQKWGFMEEFSWYTAGEREYFADPWTLFVTQMALMGWVEGRRWMDYLNPGSVDI 180
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
+P FPN K DVGYPGGLWFD WG GSPE V LRTKEIKNGRLAMLA +G WFQ
Sbjct: 181 EPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQV 240
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
+YTG GP+DNL AHLADPGH +F+AFT
Sbjct: 241 VYTGQGPLDNLFAHLADPGHCNIFSAFT 268
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 135/230 (58%), Positives = 156/230 (67%), Gaps = 15/230 (6%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
++ + GAT G VS P+RPLWFPGS+PP WLDGSLPGDFGFDPLGL
Sbjct: 35 RMAGHRAGATKG--GVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPE 92
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEM 143
E++H RWAML AGI +PE+L K G + SW AG +YF D TLF+ +M
Sbjct: 93 LLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARDYFADPWTLFVSQM 152
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
+GWAEGRRWAD + PGCV +P PN + DVGYPGGLWFD WG GSPE V L
Sbjct: 153 ALMGWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVL 212
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
RTKEIKNGRLAMLA +G WFQ +YTG GPIDNL+ HLADPGH VF+AFT
Sbjct: 213 RTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFT 262
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 131/216 (60%), Positives = 151/216 (69%), Gaps = 13/216 (6%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHC 96
+ VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL E++H
Sbjct: 49 KGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHA 108
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWAD 156
RWAMLG +GI IPE+L K+G + SWY AG +EYF D TTLFIV++ +GW EGRRWAD
Sbjct: 109 RWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWAD 168
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
I+ PG V+ +P PN DVGYPGGLWFDP+ WG GSPE V LRTKEIKNGRLAML
Sbjct: 169 IVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAML 228
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
A +G FQ +Y G PIDNL+AHLADPG F F
Sbjct: 229 AFLGFCFQAVYVGGSPIDNLMAHLADPGSCQHFLGF 264
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 133/226 (58%), Positives = 153/226 (67%), Gaps = 15/226 (6%)
Query: 41 RKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
+ GAT S+S P+RP+WFPG+ PP WLDGSLPGDFGFDPLG
Sbjct: 48 HRTGATKS--SLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESLRW 105
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIG 147
E++H RWAML AGI IPE+L K G + SWYTAGE EYF D TLF+ +M +G
Sbjct: 106 FAQAELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADPWTLFVTQMALMG 165
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
W EGRRW D + PG V+ +P FPN K DVGYPGGLWFD WG GSPE V LRTKE
Sbjct: 166 WVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKE 225
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
IKNGRLAMLA +G WFQ +YTG GP+ NL AHLADPGH +F+AFT
Sbjct: 226 IKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFT 271
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 129/254 (50%), Positives = 160/254 (62%), Gaps = 17/254 (6%)
Query: 13 ISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP 72
+ +P+ ++ VA + GG+ ++ R AG + VS P+RP +
Sbjct: 20 VQNPTQRRPHVVASTSST---GGRLMRERLVVVRAG-KEVSSVCEPLPPDRPYGSLVALH 75
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
WLDGSLPGDFGFDP GL E++H RWAML GI IPE L +LG +
Sbjct: 76 LNWLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIE 135
Query: 120 TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
SWY AG EYF D+TTLF+ +M+ +GWAEGRRWAD+IKPG V+ +P +P+ D
Sbjct: 136 NFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDA 195
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
GYPGGLWFD + WG GSPE V LRTKEIKNGRLAMLA +G FQ YT PI+NL+AH
Sbjct: 196 GYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAH 255
Query: 240 LADPGHATVFAAFT 253
LADPGH VF+AFT
Sbjct: 256 LADPGHCNVFSAFT 269
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/174 (72%), Positives = 137/174 (78%), Gaps = 17/174 (9%)
Query: 29 KASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDP 88
+SFLGGK L LR+ A A S +V AAA DPNRP+WFPGSTPP WLDGSLPGDFGFDP
Sbjct: 25 SSSFLGGKTL-LRQ--AEAARPSFAVRAAA-DPNRPIWFPGSTPPPWLDGSLPGDFGFDP 80
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT 135
GL E+VHCRWAMLGAAGIFIPE LTK+G+LNTP WYTAGE +YFTDT
Sbjct: 81 WGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDT 140
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
TTLFI+E+I IGWAEGRRWADIIKPG VNTDPIFP+NKLTGTDVGY L DP
Sbjct: 141 TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYSSFLLHDP 194
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/165 (73%), Positives = 133/165 (80%), Gaps = 17/165 (10%)
Query: 29 KASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDP 88
+SFLGGK L LR+ A A S +V AAA DPNRP+WFPGSTPP WLDGSLPGDFGFDP
Sbjct: 25 SSSFLGGKTL-LRQ--AEAARPSFAVRAAA-DPNRPIWFPGSTPPPWLDGSLPGDFGFDP 80
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT 135
GL E+VHCRWAMLGAAGIFIPE LTK+G+LNTP WYTAGE +YFTDT
Sbjct: 81 WGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDT 140
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
TTLFI+E+I IGWAEGRRWADIIKPG VNTDPIFP+NKLTGTDVG
Sbjct: 141 TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVG 185
>gi|211953347|gb|ACJ13835.1| chlorophyll binding protein [Helianthus annuus]
Length = 116
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/114 (93%), Positives = 111/114 (97%)
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 198
FI+E+IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA 60
Query: 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
K+KELRTKEIKNGRLAMLAVMGAWFQ IYTGTGPIDNL AHLADPGHAT+FAAF
Sbjct: 61 KLKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 114
>gi|211953323|gb|ACJ13823.1| chlorophyll binding protein [Helianthus annuus]
gi|211953325|gb|ACJ13824.1| chlorophyll binding protein [Helianthus annuus]
gi|211953327|gb|ACJ13825.1| chlorophyll binding protein [Helianthus annuus]
gi|211953329|gb|ACJ13826.1| chlorophyll binding protein [Helianthus annuus]
gi|211953331|gb|ACJ13827.1| chlorophyll binding protein [Helianthus annuus]
gi|211953333|gb|ACJ13828.1| chlorophyll binding protein [Helianthus annuus]
gi|211953335|gb|ACJ13829.1| chlorophyll binding protein [Helianthus annuus]
gi|211953337|gb|ACJ13830.1| chlorophyll binding protein [Helianthus annuus]
gi|211953339|gb|ACJ13831.1| chlorophyll binding protein [Helianthus annuus]
gi|211953341|gb|ACJ13832.1| chlorophyll binding protein [Helianthus annuus]
gi|211953349|gb|ACJ13836.1| chlorophyll binding protein [Helianthus annuus]
gi|211953351|gb|ACJ13837.1| chlorophyll binding protein [Helianthus annuus]
gi|211953353|gb|ACJ13838.1| chlorophyll binding protein [Helianthus annuus]
gi|211953355|gb|ACJ13839.1| chlorophyll binding protein [Helianthus annuus]
gi|211953357|gb|ACJ13840.1| chlorophyll binding protein [Helianthus annuus]
gi|211953359|gb|ACJ13841.1| chlorophyll binding protein [Helianthus annuus]
gi|211953361|gb|ACJ13842.1| chlorophyll binding protein [Helianthus annuus]
gi|211953363|gb|ACJ13843.1| chlorophyll binding protein [Helianthus annuus]
gi|211953365|gb|ACJ13844.1| chlorophyll binding protein [Helianthus annuus]
gi|211953367|gb|ACJ13845.1| chlorophyll binding protein [Helianthus annuus]
gi|211953369|gb|ACJ13846.1| chlorophyll binding protein [Helianthus annuus]
gi|211953371|gb|ACJ13847.1| chlorophyll binding protein [Helianthus annuus]
gi|211953373|gb|ACJ13848.1| chlorophyll binding protein [Helianthus annuus]
gi|211953375|gb|ACJ13849.1| chlorophyll binding protein [Helianthus annuus]
gi|211953377|gb|ACJ13850.1| chlorophyll binding protein [Helianthus petiolaris]
gi|211953379|gb|ACJ13851.1| chlorophyll binding protein [Helianthus petiolaris]
Length = 116
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 106/114 (92%), Positives = 111/114 (97%)
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 198
FI+E+IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG+GSP
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPA 60
Query: 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
K+KELRTKEIKNGRLAMLAVMGAWFQ IYTGTGPIDNL AHLADPGHAT+FAAF
Sbjct: 61 KLKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 114
>gi|211953343|gb|ACJ13833.1| chlorophyll binding protein [Helianthus annuus]
gi|211953345|gb|ACJ13834.1| chlorophyll binding protein [Helianthus annuus]
Length = 116
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/114 (92%), Positives = 110/114 (96%)
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 198
FI+E+IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG+GSP
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPA 60
Query: 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
K+KELRTKEIKNG LAMLAVMGAWFQ IYTGTGPIDNL AHLADPGHAT+FAAF
Sbjct: 61 KLKELRTKEIKNGSLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 114
>gi|223948005|gb|ACN28086.1| unknown [Zea mays]
Length = 163
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/161 (63%), Positives = 122/161 (75%), Gaps = 1/161 (0%)
Query: 94 VHCRWAMLGAAGIFIPELLTKLGILNTP-SWYTAGELEYFTDTTTLFIVEMIFIGWAEGR 152
+H RWAML AAGI +P+LL + G ++ SW+ AG EYF D TLF+ +M +GWAEGR
Sbjct: 1 MHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWAEGR 60
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
RWAD ++PGCV+ +P FPN K DVGYPGGLWFD WG GSPE V LRTKEIKNGR
Sbjct: 61 RWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGR 120
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
LAMLA +G WFQ +YTG GPIDNL+AHLADPGH +F+AFT
Sbjct: 121 LAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFT 161
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 143/230 (62%), Gaps = 17/230 (7%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---- 91
++LK R A RSV VSA A RP+W+PG P LDGSLPGDFGFDPL L
Sbjct: 13 RRLKARATTTRASRRSVVVSAEAG-AERPVWYPGKAPAPHLDGSLPGDFGFDPLSLSADP 71
Query: 92 ---------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVE 142
E+ H RWAMLG AG PELLTK+G+ + P+W AG +Y+ LF ++
Sbjct: 72 EMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLPNWVDAGTYQYWAPAGPLFFIQ 131
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIF-PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVK 201
M WAE RRW D+ PG +NTDP+F N+ T TDVGYPGGL FD LG+ P K K
Sbjct: 132 MAMFNWAEVRRWQDMKNPGSMNTDPLFGYNSNDTNTDVGYPGGL-FDKLGYAK-DPAKAK 189
Query: 202 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 251
EL+ KEIKNGRLAM+A +G Q++ TG GP++NL +H+A PG F +
Sbjct: 190 ELKLKEIKNGRLAMVAFLGICAQYVQTGQGPVENLFSHIASPGSVGYFGS 239
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 104/180 (57%), Positives = 123/180 (68%), Gaps = 13/180 (7%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHC 96
+ VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGL E++H
Sbjct: 49 KGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHA 108
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWAD 156
RWAMLG +GI IPE+L K+G + SWY AG +EYF D TTLFIV++ +GW EGRRWAD
Sbjct: 109 RWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWAD 168
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
I+ PG V+ +P PN DVGYPGGLWFDP+ WG GSPE V LRTK ++ G L L
Sbjct: 169 IVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKRLRMGDLLCL 228
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL- 236
D PG FDPLG GS PE +K L E+ + R AML V G I G + N
Sbjct: 76 DGSLPGDFGFDPLGLGS-DPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFS 134
Query: 237 ------IAHLADP 243
+ + ADP
Sbjct: 135 WYNAGSVEYFADP 147
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 117/234 (50%), Positives = 144/234 (61%), Gaps = 19/234 (8%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---- 91
+ + R G + SV AAA PN +FPGSTPP+ LDG++PGD+GFDPLGL
Sbjct: 17 RAHRHRSLGCRSARSSVRTVAAAVRPN---YFPGSTPPKHLDGTMPGDYGFDPLGLGEDK 73
Query: 92 ---------EIVHCRWAMLGAAGIFIPELL-TKLGILNTPSWYTAGELE-YFTDTTTLFI 140
E++H RWAMLG AG+ PE+ L P+W A + Y D TLF+
Sbjct: 74 AALAWYQQAELMHARWAMLGVAGMAAPEIFGNPLVDGPLPNWADAPFYDGYIADANTLFV 133
Query: 141 VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKV 200
V+M + WAE RRW D+ PG V+ DP + K TGTDVGYPGG F+P+G S E+
Sbjct: 134 VQMFLMNWAEVRRWQDMKNPGSVHADPYDESRKCTGTDVGYPGGGLFNPMGMAK-SAEEE 192
Query: 201 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTP 254
K LRTKEI NGRLAM+A MG + QH TGTGP+ NL AHLADP HAT+F F P
Sbjct: 193 KTLRTKEIANGRLAMVAAMGCFIQHDVTGTGPVANLKAHLADPAHATIFQNFQP 246
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 117/261 (44%), Positives = 152/261 (58%), Gaps = 29/261 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A AA+ P + KSR FL G KL + + S S + +
Sbjct: 1 MATVTTQ-ASAAVFRPCASKSR---------FLTGSSGKLGREVSVKPMTSSSYRSFKVE 50
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG + P +LDGSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 51 AKKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGML 110
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 111 LPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 170
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF N L +VGYPGG+ F+PL + +E + KE+ NGRLAMLA +G QH
Sbjct: 171 IFKNYSLPPNEVGYPGGI-FNPLNFAP-----TEEAKEKELANGRLAMLAFLGFIVQHNV 224
Query: 228 TGTGPIDNLIAHLADPGHATV 248
TG GP DNL+ H++DP H T+
Sbjct: 225 TGKGPFDNLLQHISDPWHNTI 245
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/261 (44%), Positives = 153/261 (58%), Gaps = 32/261 (12%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A AA+ P + KSR FL G KL G + ++ S+ +
Sbjct: 1 MATVTTQ-ASAAVFRPCASKSR---------FLTGSSGKL---GREVSVKPMTSSSFKVE 47
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG + P +LDGSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 48 AKKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGML 107
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 108 LPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 167
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF N L +VGYPGG+ F+PL + +E + KE+ NGRLAMLA +G QH
Sbjct: 168 IFKNYSLPPNEVGYPGGI-FNPLNFAP-----TEEAKEKELANGRLAMLAFLGFIVQHNV 221
Query: 228 TGTGPIDNLIAHLADPGHATV 248
TG GP DNL+ H++DP H T+
Sbjct: 222 TGKGPFDNLLQHISDPWHNTI 242
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/181 (62%), Positives = 133/181 (73%), Gaps = 28/181 (15%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKAS-FLGGK----KLKLRKNGATAGTRSVSVS 55
MA V AS + A+++ + GA +AS FLGG +L LR+ +++ S +V
Sbjct: 1 MALVSASSSTTAVAA--------LPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVR 52
Query: 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
AAA P+RP+WFPGSTPP WLDGSLPGDFGFDPLGL E+VHCRWAMLG
Sbjct: 53 AAA--PDRPIWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 110
Query: 103 AAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGC 162
AAGIFIPE LTK+GILNTPSWYTAGE +YFTDTTTLFI+E+I IGWAEGRRWADIIKPGC
Sbjct: 111 AAGIFIPEFLTKIGILNTPSWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGC 170
Query: 163 V 163
V
Sbjct: 171 V 171
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 139/217 (64%), Gaps = 22/217 (10%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVH 95
RSVSV A+ +P+WFPG P+ L G LPGD+GFDPL L E+ H
Sbjct: 23 QRSVSVRAS----TQPMWFPGMDAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQH 78
Query: 96 CRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELE-YFTDTTTLFIVEMIFIGWAEGRRW 154
RWAMLG AG PE+LTK+GI + P+W+ A + YFTD TTLF V+M+ + WAE RRW
Sbjct: 79 GRWAMLGVAGAAAPEILTKMGISDLPNWHDAPNYQGYFTDATTLFWVQMLMMNWAEVRRW 138
Query: 155 ADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
D+ KPG VN DP F NKL VGYPGG+ FDPLG+ G + +L+ KEI NGRLA
Sbjct: 139 QDMRKPGSVNEDPAFSGNKLPSGIVGYPGGI-FDPLGYAKGD---LNKLKAKEIANGRLA 194
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 251
M+A G Q+ +TG GP+ NL+AH++DP H VF A
Sbjct: 195 MVAFAGIMVQYDHTGVGPVANLVAHMSDPAHNNVFQA 231
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 143/240 (59%), Gaps = 21/240 (8%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGF 86
AT+ FL G KL N + S S ++ + + W PG P +LDGSLPGD GF
Sbjct: 17 ATRTRFLTGSSGKL--NREVSFRPSTSNNSFKVEAKKGEWLPGLASPAYLDGSLPGDNGF 74
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFT 133
DPLGL E+V+ RWAMLG AG+ +PE+ T +GILN P WY AG+ EYF
Sbjct: 75 DPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKAEYFA 134
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
++TLF++E I + E RRW DI PGCVN DPIF N L + GYPGG+ F+PL +
Sbjct: 135 SSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKNYSLPPNECGYPGGI-FNPLNFA 193
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ +E + KE+ NGRLAMLA +G QH TG GP DNL+ HL+DP H T+ +
Sbjct: 194 A-----TEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 248
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 151/243 (62%), Gaps = 20/243 (8%)
Query: 23 SVAGATKASFLGGKKLKLRKNGATAGTR-SVSVSAAAADPNRPLWFPGSTPPEWLDGSLP 81
S+ A+ L K +R G + R SV V A AA RP W PGS P LDG+LP
Sbjct: 3 SIVAQQLAAGLTQKSRTVRPRGVASKARASVRVGAVAA--ARPTWLPGSPAPAHLDGTLP 60
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE 128
D+GFDPL L E++HCRWAMLG AG+ PELLTK+G+ + P+W AG+
Sbjct: 61 CDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIGMADLPNWIDAGK 120
Query: 129 LE-YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGTDVGYPGGLW 186
+ Y+ LF V+M + WAE RRW D+ PG +N DP+ NK T TDVGYP GL
Sbjct: 121 WDGYWLGAGPLFFVQMAMMNWAEVRRWQDMKAPGTMNEDPLTGANKGDTNTDVGYPKGL- 179
Query: 187 FDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHA 246
FDP+G+ P+K +EL+ KEI NGRLAM+A++G + Q I TGTGP+DNL HLADPGH
Sbjct: 180 FDPMGYAK-DPKKAEELKRKEIANGRLAMVAIVGCFAQAISTGTGPVDNLFTHLADPGHN 238
Query: 247 TVF 249
+F
Sbjct: 239 NIF 241
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 146/236 (61%), Gaps = 22/236 (9%)
Query: 36 KKLKLRKNGATAGTRS--VSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-- 91
K + R+ + TRS +VSAAA RP +FPGSTPP+ LDG++ GD+GFDPLGL
Sbjct: 17 KLSRARRRLVSRSTRSGLFAVSAAA----RPNFFPGSTPPKHLDGTMAGDYGFDPLGLGE 72
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGILN-TPSWYTAGELE-YFTDTTTL 138
E+VH RWAMLG AG+ PEL+ + P+W A + Y D TL
Sbjct: 73 DKVALQWYQQAELVHARWAMLGVAGMAAPELVGNPFVDGPLPNWAEAPFFDGYIADANTL 132
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 198
F+V+M F+ WAE RRW D+ PG V+ DP N K TG+DVGYPGG F+P+G +
Sbjct: 133 FVVQMFFMNWAEVRRWQDMKNPGSVHADPYDENRKCTGSDVGYPGGGLFNPMGMAKSVAD 192
Query: 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTP 254
+ K LR KEI NGRLAM+A MG + QH TGTGP+ NL AH+ADP H T+F F P
Sbjct: 193 E-KALRAKEIANGRLAMVAAMGCFIQHDVTGTGPVANLKAHIADPVHVTIFQNFQP 247
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 141/220 (64%), Gaps = 16/220 (7%)
Query: 46 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------E 92
+A R+V S A+ +RPLW PG+ P L G LPGD+GFDPL L E
Sbjct: 19 SATKRTVRSSVIASAESRPLWMPGTAAPSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAE 78
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELE-YFTDTTTLFIVEMIFIGWAEG 151
+ H RWAMLG AG+ PELLT G+ + P+W+ A YF +TTLF V+M + WAE
Sbjct: 79 LQHARWAMLGVAGMAAPELLTMFGVSDLPNWHDAPFYNGYFASSTTLFTVQMFMMNWAEI 138
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
RRW DI PG V+ DP FP NKL DVGYPGG+ F+P+ +G S +++K L+ KEI NG
Sbjct: 139 RRWQDIKNPGSVSEDPAFPGNKLPAGDVGYPGGI-FNPMNYGK-STDELKALKAKEIANG 196
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 251
RLAM+A +G + Q+ +TG GP++NL +HL++PG VF A
Sbjct: 197 RLAMVAALGCFIQYDHTGVGPVENLTSHLSNPGVNNVFKA 236
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 157/266 (59%), Gaps = 30/266 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V ++ A AA+ P + KSR +AGA ++L ++ ++ + S V A +
Sbjct: 1 MATV-STQASAAVFRPCAYKSRFLAGAPSKL---NRELSIKPMASS--SPSFKVEAKKGE 54
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 55 -----WLPGLPSPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 109
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PGCVN DP
Sbjct: 110 LPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDP 169
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L + GYPGG+ F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 170 IFKQYSLPPNECGYPGGI-FNPLNFAP-----TIEAKEKELANGRLAMLAFLGFVIQHNV 223
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ H++DP H T+ F+
Sbjct: 224 TGKGPFDNLLQHISDPWHNTIVQTFS 249
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 152/266 (57%), Gaps = 30/266 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A AA+ P + KSR FL G KL + A S S ++ +
Sbjct: 1 MATVTTQ-ASAAVFRPCASKSR---------FLSGSPSKLNREVAFKPMSS-SPASFKVE 49
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 50 AKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGML 109
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 110 LPEVFTKIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 169
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L +VGYPGG+ F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 170 IFKQYSLPPNEVGYPGGI-FNPLNFAP-----TLEAKEKELANGRLAMLAFLGFVIQHNV 223
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ F+
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTFS 249
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/261 (44%), Positives = 147/261 (56%), Gaps = 29/261 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A A + P + +SR FL G K + + T S +A +
Sbjct: 1 MATVITQ-ASATVFRPCASRSR---------FLSGSSGKFNRALSVKPTTSSIPNAFKVE 50
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG P +LDGSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 51 AKKGEWLPGLPSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMV 110
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+LT GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 111 LPEVLTNYGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 170
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L DVGYPGG+ F+PL + E E R KEI NGRLAMLA +G QH
Sbjct: 171 IFKQYSLPPNDVGYPGGI-FNPLNF-----EPTLEAREKEIANGRLAMLAFLGFIVQHNV 224
Query: 228 TGTGPIDNLIAHLADPGHATV 248
TG GP DN + H++DP H T+
Sbjct: 225 TGKGPFDNFMQHISDPWHNTI 245
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 154/266 (57%), Gaps = 30/266 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A ++A I S +SR + G++ A + R A+ + VSA +
Sbjct: 1 MASVTAQTSLAVIRPCS--RSRFLTGSSPAKL----RPVSRNPSASRAVPAFRVSAKKGE 54
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P++L+GSLPGD GFDPLGL E+ + RWAMLG AG+
Sbjct: 55 -----WLPGLASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGML 109
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 110 LPEVFTKIGIINAPQWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 169
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + +L +VGYPGG+ F+PL + E + KEI NGRLAMLA +G QH
Sbjct: 170 IFKSYRLPPNEVGYPGGI-FNPLNFAPS-----LEAKEKEIANGRLAMLAFLGFLIQHNL 223
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ +
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLS 249
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 157/266 (59%), Gaps = 30/266 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V ++ A AA+ P + KSR +AGA ++L ++ ++ + S V A +
Sbjct: 1 MATV-STQASAAVFRPCAYKSRFLAGAPSKL---NRELSIKPMASS--SPSFKVEAKKGE 54
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 55 -----WLPGLPSPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 109
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PGCVN DP
Sbjct: 110 LPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDP 169
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L + GYPGG+ F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 170 IFKQYSLPPNECGYPGGI-FNPLNFAP-----TIEAKEKELANGRLAMLAFLGFVIQHNV 223
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP +NL+ H++DP H T+ F+
Sbjct: 224 TGKGPFENLLQHISDPWHNTIVQTFS 249
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 151/266 (56%), Gaps = 29/266 (10%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A AAI P + ++R FL G KL + + + S S ++ +
Sbjct: 1 MATVTTQ-ASAAIFRPCASRTR---------FLTGSSGKLNREVSFRPSTSSSYNSFKVE 50
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG P++LDGSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 51 AKKGQWLPGLASPDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGML 110
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ T +GILN P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 111 LPEVFTSIGILNVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 170
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L GYPGG+ F+PL + +E + KE+ NGRLAMLA +G QH
Sbjct: 171 IFKSYSLPPNKCGYPGGI-FNPLNFA-----PTEEAKEKELANGRLAMLAFLGFIVQHNV 224
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL DP H T+ +
Sbjct: 225 TGKGPFDNLLQHLFDPWHNTIIQTLS 250
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 152/265 (57%), Gaps = 29/265 (10%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A AA+ P + +SR FL G KL++ + + S S+ +
Sbjct: 1 MATVTTQ-ASAAVFRPCAARSR---------FLSGSSGKLQRVLSVKPVSASSSSSFKVE 50
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 51 AKKGEWLPGLPSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 110
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PGCVN DP
Sbjct: 111 LPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDP 170
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L + GYPGG+ F+PL + E + KEI NGRLAMLA +G QH
Sbjct: 171 IFKQYSLPPNECGYPGGI-FNPLNFAP-----TLEAKEKEIANGRLAMLAFLGFIVQHNV 224
Query: 228 TGTGPIDNLIAHLADPGHATVFAAF 252
TG GP DNL+ H++DP H T+ F
Sbjct: 225 TGKGPFDNLLQHISDPWHNTIVQTF 249
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 145/247 (58%), Gaps = 23/247 (9%)
Query: 23 SVAG----ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDG 78
S+AG A+K+ FL G KL K + S ++ + + W PG P +L+G
Sbjct: 9 SIAGFRPCASKSRFLTGAPGKLNKECGVRLPSTSSTNSLKVEAKKGEWLPGLASPAYLNG 68
Query: 79 SLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 125
SLPGD GFDPL L E+V+ RWAMLG AG+ +PE+ T++GI+N P WY
Sbjct: 69 SLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIINVPKWYD 128
Query: 126 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 185
AG+ EYF ++TLF++E I + E RRW DI PG VN DPIF L +VGYPGG+
Sbjct: 129 AGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI 188
Query: 186 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
F+PL + + E + KE+ NGRLAMLA +G QH TG GP DNL+ HL+DP H
Sbjct: 189 -FNPLNFAPTA-----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWH 242
Query: 246 ATVFAAF 252
T+ F
Sbjct: 243 NTIIQTF 249
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 151/267 (56%), Gaps = 37/267 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ +S KS FLG R + +T RS+ V A
Sbjct: 1 MASVTARAPVAALRPSASLKS---------GFLGHSSRLGRASSST--RRSLRVEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +LDGSL GD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLASPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVL 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK-PGCVNTD 166
+PE+LTK+GI+N P WY AG+ YF ++TLF++E I + E RRW DIIK PGCVN D
Sbjct: 104 VPEVLTKIGIINAPQWYDAGKSTYFASSSTLFVIEFILFHYVEIRRWQDIIKNPGCVNQD 163
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
PIF N L + GYPG + F+PL + E E + KE+ NGRLAMLA +G QH
Sbjct: 164 PIFKNYSLPPHECGYPGSV-FNPLNF-----EPTLEAKEKELANGRLAMLAFLGFMVQHG 217
Query: 227 YTGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP +NL+ HL DP H T+ +
Sbjct: 218 ITGKGPFENLLQHLFDPWHNTIIQTLS 244
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 154/268 (57%), Gaps = 30/268 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A+ +S PS +S + G++ + ++R A RS V A
Sbjct: 1 MASVTTQAALG-VSCPSVCRSAFLTGSSVSRL----ARRVRPGSNPAPARSFKVEAKGE- 54
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG + P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 55 -----WLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGML 109
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LT +G++N P WY AG++EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 110 IPEVLTSIGLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDP 169
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
+F L +VGYPGG+ F+PL + SP E + KE+ NGRLAMLA +G QH
Sbjct: 170 LFKQYSLPPNEVGYPGGI-FNPLNF---SPS--MEAKEKELANGRLAMLAFLGFVVQHNV 223
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFTPK 255
TG GP DNL+ HL+DP H T+ K
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLQGK 251
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 136/224 (60%), Gaps = 16/224 (7%)
Query: 40 LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
L+ AT S A +A+ +RP+W+PG P LDGSLPGD+GFDPL L
Sbjct: 13 LKTRVATKTRASRGPVAVSANADRPVWYPGKAPAAHLDGSLPGDYGFDPLSLSADPEMRQ 72
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFI 146
E+ H RWAMLG AG PELLTK+G+ + P+W A +Y+ TLF ++M
Sbjct: 73 WMVQAELQHARWAMLGVAGCVAPELLTKIGVADLPNWVDAATYQYWAPGGTLFFIQMAMF 132
Query: 147 GWAEGRRWADIIKPGCVNTDPIF-PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 205
WAE RRW D+ PG VNTDP+F N+ T TDVGYP GL FD GW + EL+
Sbjct: 133 NWAEIRRWQDMKNPGSVNTDPLFGYNSNDTNTDVGYPKGL-FDKFGWAK-DEKTTAELKL 190
Query: 206 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
KEIKNGRLAMLA +G Q++ TG GP++NL +H+ +PG VF
Sbjct: 191 KEIKNGRLAMLAFLGICAQYVQTGVGPVENLFSHMGNPGQVGVF 234
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 152/266 (57%), Gaps = 28/266 (10%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A A+I P + K R + G++ + L G++A T S V A +
Sbjct: 1 MATVTTH-ASASIFRPCTSKPRFLTGSSGRL---NRDLSFTSIGSSAKTSSFKVEAKKGE 56
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P++L GSL GD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 57 -----WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGML 111
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ +YF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 112 LPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 171
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L +VGYPGG+ F+PL + +E + KE+ NGRLAMLA +G QH
Sbjct: 172 IFKQYSLPKGEVGYPGGI-FNPLNFAP-----TQEAKEKELANGRLAMLAFLGFVVQHNV 225
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP +NL+ HL+DP H T+ F
Sbjct: 226 TGKGPFENLLQHLSDPWHNTIVQTFN 251
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 151/266 (56%), Gaps = 36/266 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ S +S KS +FLG +L + A R+V A
Sbjct: 1 MASVTARTPVAALRSSASLKS---------TFLGQSSTRLAR--APTTRRNVRAEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+LTK+G+++ P WY AG+ YF ++TLF++E I + E RRW DI PGCVN DP
Sbjct: 104 LPEVLTKIGLIDAPQWYDAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E E + KE+ NGRLAMLA +G QH
Sbjct: 164 IFKSYSLPPHECGYPGSV-FNPLNF-----EPTLEAKEKELANGRLAMLAFLGFLVQHNV 217
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
T GP DNL+ HL+DP H T+ +
Sbjct: 218 TQKGPFDNLLQHLSDPWHNTIIQTLS 243
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 150/266 (56%), Gaps = 36/266 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ +S KS FLG R + +T RS+ V A
Sbjct: 1 MASVTARAPVAALRPSASLKS---------GFLGHSSRLGRASSST--RRSLRVEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+LTK+GI+N P WY AG+ YF ++TLF++E I + E RRW DI PGCVN DP
Sbjct: 104 LPEVLTKIGIINAPLWYDAGKSTYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF N L + GYPG + F+PL + E E + KE+ NGRLAMLA + QH
Sbjct: 164 IFKNYSLPPHECGYPGSV-FNPLNF-----EPTLEAKEKELANGRLAMLAFLAFMVQHGI 217
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP +NL+ HL+DP H T+ +
Sbjct: 218 TGKGPFENLLQHLSDPWHNTIIQTLS 243
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/266 (42%), Positives = 153/266 (57%), Gaps = 28/266 (10%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A A+I P + K R + G++ ++L + G+++ T S V A +
Sbjct: 1 MATVTTQ-ASASIFRPCTSKPRFLTGSSGRL---NRELSFKSIGSSSKTASFKVEAKKGE 56
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSL GD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 57 -----WLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGML 111
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ +YF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 112 LPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 171
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L +VGYPGG+ F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 172 IFKQYSLPPNEVGYPGGI-FNPLNFAP-----TVEAKEKELANGRLAMLAFLGFVIQHNV 225
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP +NL+ HL+DP H T+ +
Sbjct: 226 TGKGPFENLLQHLSDPWHNTIVQTLS 251
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 150/267 (56%), Gaps = 38/267 (14%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLG-GKKLKLRKNGATAGTRSVSVSAAAA 59
MAS+ A VAA+ +S S FLG +L L ++ RS+ V A
Sbjct: 1 MASITARAPVAALRPSASLNS---------GFLGHSSRLGL---ASSTSRRSLRVEAKGE 48
Query: 60 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
W PG P +LDG LPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 ------WLPGLPSPAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGM 102
Query: 107 FIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
PELLTK+G++N P WY AG+ YF ++TLF+VE I + E RRW DI +PGCVN D
Sbjct: 103 LTPELLTKIGLINAPEWYDAGKSTYFASSSTLFVVEFILFHYVEIRRWQDIKEPGCVNQD 162
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
PIF + L + GYPG + F+PL + E + KEI NGRLAMLA +G QH
Sbjct: 163 PIFKSYSLPPHECGYPGSV-FNPLNFA-----PTLEAKEKEIANGRLAMLAYLGFSVQHA 216
Query: 227 YTGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP+DNL HL+DP H T+ F+
Sbjct: 217 VTGKGPLDNLFQHLSDPWHNTIIQTFS 243
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 106/131 (80%), Gaps = 13/131 (9%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHC 96
R+ + A RPLWFPG+TPP WLDGSLPGDFGFDPLGL E+VHC
Sbjct: 7 RAAVTVSQAVQTERPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHC 66
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWAD 156
RWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTD TTLF+VEMIF+GWAEGRRWAD
Sbjct: 67 RWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDKTTLFVVEMIFLGWAEGRRWAD 126
Query: 157 IIKPGCVNTDP 167
I+KPG VNTDP
Sbjct: 127 ILKPGSVNTDP 137
>gi|15241811|ref|NP_198197.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|332006417|gb|AED93800.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 173
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/103 (91%), Positives = 98/103 (95%)
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
R DIIKPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP K+KELRTKEIKNGR
Sbjct: 71 RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
LAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAFTPK
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 173
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 149/260 (57%), Gaps = 29/260 (11%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP 68
A +S PS +S + G++ + ++R A RS V A W P
Sbjct: 1 AALGVSCPSVCRSGFLTGSSVSRL----ARRVRPGSNPAPARSFKVEAKGE------WLP 50
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G + P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+ IPE+LT +
Sbjct: 51 GLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSI 110
Query: 116 GILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 175
G++N P WY AG++EYF ++TLF++E I + E RRW DI PG VN DP+F L
Sbjct: 111 GLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLP 170
Query: 176 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
+VGYPGG+ F+PL + SP E + KE+ NGRLAMLA +G QH TG GP DN
Sbjct: 171 PNEVGYPGGI-FNPLNF---SPS--MEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDN 224
Query: 236 LIAHLADPGHATVFAAFTPK 255
L+ HL+DP H T+ K
Sbjct: 225 LLQHLSDPWHNTIIQTLQGK 244
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 150/266 (56%), Gaps = 36/266 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ +S KS +FLG +L + A R+V A
Sbjct: 1 MASVTARAPVAALRPSASLKS---------TFLGQSSTRLAR--APTTRRNVRAEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+LTK+G+++ P WY AG+ YF ++TLF++E I + E RRW DI PGCVN DP
Sbjct: 104 LPEVLTKIGLIDAPQWYDAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E E + KE+ NGRLAMLA +G QH
Sbjct: 164 IFKSYSLPPHECGYPGSV-FNPLNF-----EPTLEAKEKELANGRLAMLAFLGFLVQHNV 217
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
T GP DNL+ HL+DP H T+ +
Sbjct: 218 TQKGPFDNLLQHLSDPWHNTIIQTLS 243
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 150/264 (56%), Gaps = 35/264 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA- 59
MA+V A AAI P KSR FLGG KL + A R V S +A+
Sbjct: 1 MATVTTQ-ASAAIFGPCGLKSR---------FLGGSSGKLNRGVAF---RPVGCSPSASF 47
Query: 60 --DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
+ + W PG P +L GSLPGD GFDPLGL E+V+ RWAMLG A
Sbjct: 48 KVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVA 107
Query: 105 GIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
G+ +PE+ T +GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN
Sbjct: 108 GMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVN 167
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DPIF L +VGYPGG+ F+PL + E + KEI NGRLAMLA +G Q
Sbjct: 168 QDPIFKQYSLPAGEVGYPGGI-FNPLNFAP-----TLEAKEKEIANGRLAMLAFLGFIIQ 221
Query: 225 HIYTGTGPIDNLIAHLADPGHATV 248
H TG GP DNL+ H++DP H T+
Sbjct: 222 HNVTGKGPFDNLLQHISDPWHNTI 245
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 146/266 (54%), Gaps = 29/266 (10%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A AAI P KSR FL G KL + A ++ +
Sbjct: 1 MATVTTQ-ASAAIFRPCGLKSR---------FLTGSSGKLNREVAIRPMGCSPSASFKVE 50
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG P +L GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 51 AKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGML 110
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ T +GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 111 LPEVFTNIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 170
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L +VGYPGG+ F+PL + E + KEI NGRLAMLA +G QH
Sbjct: 171 IFKQYSLPKGEVGYPGGI-FNPLNFAP-----TLEAKEKEIANGRLAMLAFLGFIIQHNV 224
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ +
Sbjct: 225 TGKGPFDNLLQHLSDPWHNTIVQTLS 250
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 144/251 (57%), Gaps = 30/251 (11%)
Query: 23 SVAGATKASFLGGKKL-----KLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD 77
S ++ FL G + ++R A RS V A W PG + P +L+
Sbjct: 13 SCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGE------WLPGLSSPTYLN 66
Query: 78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY 124
GSLPGD GFDPLGL E+V+ RWAMLG AG+ IPE+LT G ++ P WY
Sbjct: 67 GSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDVPKWY 126
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
AG++EYF ++TLF++E I + E RRW DI PG VN DP+F N L +VGYPGG
Sbjct: 127 DAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPNEVGYPGG 186
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
+ F+PL + SP E + KE+ NGRLAMLA +G QH TG GP +NL+ HL+DP
Sbjct: 187 I-FNPLNF---SPS--MEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPW 240
Query: 245 HATVFAAFTPK 255
H T+ F K
Sbjct: 241 HNTIIQTFQGK 251
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 144/251 (57%), Gaps = 30/251 (11%)
Query: 23 SVAGATKASFLGGKKL-----KLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD 77
S ++ FL G + ++R A RS V A W PG + P +L+
Sbjct: 13 SCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGE------WLPGLSSPTYLN 66
Query: 78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY 124
GSLPGD GFDPLGL E+V+ RWAMLG AG+ IPE+LT G ++ P WY
Sbjct: 67 GSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDVPKWY 126
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
AG++EYF ++TLF++E I + E RRW DI PG VN DP+F N L +VGYPGG
Sbjct: 127 DAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPNEVGYPGG 186
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
+ F+PL + SP E + KE+ NGRLAMLA +G QH TG GP +NL+ HL+DP
Sbjct: 187 I-FNPLNF---SPS--MEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPW 240
Query: 245 HATVFAAFTPK 255
H T+ F K
Sbjct: 241 HNTIIQTFQGK 251
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 150/266 (56%), Gaps = 36/266 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MAS A VAA+ S +S KS +FLG +L + A R+V A
Sbjct: 1 MASDTARTPVAALLSSASLKS---------TFLGQSSTRLAR--APTTRRNVRAEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+LTK+G+++ P WY AG+ YF + TLF++E I + E R+W DI PGCVN DP
Sbjct: 104 LPEVLTKIGLIDAPQWYDAGKATYFASSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + +L + GYPG + F+PL + E E + KE+ NGRLAMLA +G QH
Sbjct: 164 IFKSYRLPSDECGYPGSV-FNPLNF-----EPTLEAKEKELANGRLAMLAFLGFLVQHNV 217
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
T GP DNL+ HL+DP H T+ +
Sbjct: 218 TQKGPFDNLLQHLSDPWHNTIIQTLS 243
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 146/266 (54%), Gaps = 36/266 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ SS ++FLG R A+ RS+ A
Sbjct: 1 MASVTARAPVAALRPSSS-----------SAFLGHSSRLGRTATASPTRRSLKAEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +LDGSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LTK G++N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 104 IPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E + KE+ NGRLAMLA + QH
Sbjct: 164 IFKSYSLPPHECGYPGSV-FNPLNFA-----PTLEAKEKELANGRLAMLAFLAFLIQHNV 217
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ +
Sbjct: 218 TGKGPFDNLLQHLSDPWHNTIIQTLS 243
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 146/242 (60%), Gaps = 22/242 (9%)
Query: 23 SVAGATKAS-FLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLP 81
SV+ +AS FLG K + + VSA++ NRP+WFPG+ P WLDGSLP
Sbjct: 1 SVSQMIQASTFLGSKVASVARATPAKAQAKFVVSASS---NRPVWFPGNAPRAWLDGSLP 57
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE 128
GDFG+DPLGL E+ + RWAMLG AG+ +L K+G+ WY A
Sbjct: 58 GDFGYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQWYEAPL 117
Query: 129 LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 188
++Y D TL +V+++ W EGRRWAD PG N DP F N+ + GYPGG FD
Sbjct: 118 VDYQADWKTLLVVQLVLHAWVEGRRWADFHSPGSANADP-FGNSLPSTATTGYPGGP-FD 175
Query: 189 PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
PLG+ G+ + EL+ KEIKNGRLAM+A +G + Q+ TG P+DNL AHLADPGHA +
Sbjct: 176 PLGFSKGN---LPELKLKEIKNGRLAMVASLGLFVQYSATGASPLDNLAAHLADPGHANI 232
Query: 249 FA 250
FA
Sbjct: 233 FA 234
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 151/261 (57%), Gaps = 29/261 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V + A AAI P + KSR + G++ +++ +R G + S V A +
Sbjct: 1 MATV-TTQASAAIFRPCTSKSRFLTGSSGKL---NREVTMRPMGCPP-SASFKVEAKKGE 55
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+G+LPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 56 -----WLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 110
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PGCVN DP
Sbjct: 111 LPEVFTKFGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDP 170
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L + GYPG + F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 171 IFKQYSLPPHECGYPGSV-FNPLNFAP-----TLEAKEKELANGRLAMLAFLGFIVQHNV 224
Query: 228 TGTGPIDNLIAHLADPGHATV 248
TG GP +NL+ HL+DP H T+
Sbjct: 225 TGKGPFENLLQHLSDPWHNTI 245
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 142/234 (60%), Gaps = 21/234 (8%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPL 89
++FLG K + + VSA++ NRP+WFPG+ P WLDGSLPGDFG+DPL
Sbjct: 5 STFLGSKVASVARATPAKAQAKFVVSASS---NRPVWFPGNAPRAWLDGSLPGDFGYDPL 61
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT 136
GL E+ + RWAMLG AG+ +L K+G+ WY A ++Y D
Sbjct: 62 GLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQADWK 121
Query: 137 TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 196
TL +V+++ W EGRRWAD PG N DP F N+ + GYPGG FDPLG+ G+
Sbjct: 122 TLLVVQLVLHAWVEGRRWADFHSPGSANADP-FGNSLPSTATTGYPGGP-FDPLGFSKGN 179
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
+ EL+ KEIKNGRLAM+A +G + Q+ TG P+DNL AHLADPGHA +FA
Sbjct: 180 ---LPELKLKEIKNGRLAMVASLGLFVQYSATGASPLDNLAAHLADPGHANIFA 230
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/266 (42%), Positives = 151/266 (56%), Gaps = 29/266 (10%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A AAI P + +SR + G++ +++ R G T S V A +
Sbjct: 1 MATVTTQ-ASAAIFRPCASRSRFLTGSSGKL---NREVAFRPMGCPPST-SFKVEAKKGE 55
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPL L E+V+ RWA LG AG+
Sbjct: 56 -----WLPGLASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGML 110
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+LT +G++N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 111 LPEVLTNIGLINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 170
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L +VGYPGG+ F+PL + +E + +E+ NGRLAMLA +G QH
Sbjct: 171 IFKQYSLPPNEVGYPGGI-FNPLNFAP-----TEEAKERELANGRLAMLAFLGFIVQHNV 224
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ +
Sbjct: 225 TGKGPFDNLLQHLSDPWHNTIVQTLS 250
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 149/266 (56%), Gaps = 36/266 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ +S KS +FLG +L + A R+V A
Sbjct: 1 MASVTARAPVAALRPSASLKS---------TFLGQSSTRLAR--APTTRRNVRAEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+LTK+G+++ P WY AG+ YF ++TLF++E I E RRW DI PGCVN DP
Sbjct: 104 LPEVLTKIGLIDAPQWYDAGKATYFASSSTLFVIEFILFHSVEIRRWQDIKNPGCVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E E + KE+ NGRLAMLA +G QH
Sbjct: 164 IFKSYSLPPHECGYPGSV-FNPLNF-----EPTLEAKEKELANGRLAMLAFLGFLVQHNV 217
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
T GP DNL+ HL+DP H T+ +
Sbjct: 218 TQKGPFDNLLQHLSDPWHNTIIQTLS 243
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/270 (45%), Positives = 156/270 (57%), Gaps = 39/270 (14%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA++ A +S+ +Q+SR+V + AS A A R +V+AA
Sbjct: 1 MATIIAQ----QLSAGLTQRSRTVRPRSVAS------------KARASVRVGAVAAA--- 41
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
RP +FPG+TPP+ LDG++PGD+GFDPLGL E+ H RWAMLG G+
Sbjct: 42 --RPNFFPGTTPPKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMA 99
Query: 108 IPELLTKLGILNT-PSWYTAGELE-YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
PEL+ + P+W A + Y TLF+V+M + WAE RRW D+ PG +N
Sbjct: 100 APELIQNPFVEGAMPNWAEAPLWDGYMASPNTLFVVQMFMMNWAEVRRWQDMKNPGTMNE 159
Query: 166 DPIFPNNK-LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP+ NK T TDVGYP GL FDP+G PEKVK L+ KEI NGRLAM+AVMG Q
Sbjct: 160 DPLTGANKGDTNTDVGYPKGL-FDPMGMAK-DPEKVKVLKVKEIANGRLAMVAVMGCIIQ 217
Query: 225 HIYTGTGPIDNLIAHLADPGHATVFAAFTP 254
+ TG GPI NL AHLADP H T+F F P
Sbjct: 218 NEATGVGPIANLKAHLADPAHNTIFTNFVP 247
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/211 (52%), Positives = 134/211 (63%), Gaps = 23/211 (10%)
Query: 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGA 103
A DP+ P W PG+T P +LDG+LPGDFGFDPL L E+VH R+AML
Sbjct: 52 AKRDPSLPSWMPGATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAV 111
Query: 104 AGIFIPELLTKLGILNTP----SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
AGI +PELLT +G + P +WY AG+ +YF ++LF V+M+ WAE RR+ D +K
Sbjct: 112 AGILVPELLTNIG-FSWPGAGVAWYDAGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVK 170
Query: 160 PGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
PG N DPIF NNKL G + GYPGG+ FDP GW G +K L+TKEIKNGRLAMLA
Sbjct: 171 PGSANQDPIFSNNKLPDGNEPGYPGGI-FDPFGWSKGD---MKSLKTKEIKNGRLAMLAF 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
G Q TGT P+ NL HLADP TV+
Sbjct: 227 AGFAAQAYTTGTTPLKNLATHLADPWATTVW 257
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 141/249 (56%), Gaps = 19/249 (7%)
Query: 13 ISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP 72
++S S Q + K SFL G +S + + + W PG
Sbjct: 1 MASVSMQAMSVSSAVCKTSFLSGTSSTRFSRNVQVAAAPISSQSLKVEAKKGEWLPGLPS 60
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L+GSL GD GFDPLGL E+ + RWAMLG AG+ +PE+LTK+G++N
Sbjct: 61 PAYLNGSLAGDNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEVLTKIGLIN 120
Query: 120 TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
P WY AG++EYF +TLF++E I + E RRW DI PG V+ DP F + KL DV
Sbjct: 121 APLWYDAGKVEYFAPASTLFVIEFILFHYVEIRRWQDIKYPGSVSQDPFFKSYKLPPGDV 180
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
GYPGG+ F+PL + + +E + KEI NGRLAMLA +G Q TG GP +NL+ H
Sbjct: 181 GYPGGI-FNPLKFPAN-----QEYKEKEIANGRLAMLAFLGMLVQSKLTGAGPFENLLTH 234
Query: 240 LADPGHATV 248
LADP H T+
Sbjct: 235 LADPWHTTI 243
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 126/200 (63%), Gaps = 17/200 (8%)
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
LWFPG TPP LDGSLP D+GFDPL L E++HCRWAM+G AGI +P L
Sbjct: 1 LWFPGDTPPAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPAL 60
Query: 112 LTKLGILNTPSWYTAGELEYFTDT---TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
LTKLG +N P W+ AG++ + + L +VE + +G+ E +RW DI PG I
Sbjct: 61 LTKLGAMNVPVWFEAGKVANDNSSVPFSALLMVEFLAMGFVETKRWYDIKSPGSQGDGSI 120
Query: 169 FP-NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
F + G VGYPGG +FDP G+ GS E K L+ KEI NGRLAM+A++G W Q+
Sbjct: 121 FGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMVGFWAQYAA 180
Query: 228 TGTGPIDNLIAHLADPGHAT 247
TG GP+DNL H+ADPGH T
Sbjct: 181 TGKGPVDNLFDHIADPGHVT 200
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 152/268 (56%), Gaps = 30/268 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A+ +S PS +S + G++ + ++R A RS V A
Sbjct: 1 MASVPTQAALG-VSCPSVCRSGFLTGSSVSRL----ARRVRPGSNPAPARSFKVEAKGE- 54
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG + P +L+GSLPGD G DPLGL E+V+ RWAMLG AG+
Sbjct: 55 -----WLPGLSSPSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMX 109
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LT +G++N P WY AG++EYF + TLF++E I + E RRW DI PG VN DP
Sbjct: 110 IPEVLTSIGLINVPKWYDAGKVEYFASSXTLFVIEFILFHYVELRRWQDIKYPGSVNQDP 169
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
I + L +VGYPGG+ F+PL + SP E + KE+ NGRLAMLA +G QH
Sbjct: 170 IXKSYSLPPNEVGYPGGI-FNPLNF---SPS--MEAKEKELANGRLAMLAFLGFVVQHNV 223
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFTPK 255
TG GP DNL+ HL+DP H T+ K
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLQGK 251
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 150/261 (57%), Gaps = 29/261 (11%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA+V A AAI P + KSR + G++ +++ +R G + S V A +
Sbjct: 1 MATVTTQ-ASAAIFRPCASKSRFLTGSSGKL---NREVTMRPMGCPP-SASFKVEAKKGE 55
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+G+LPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 56 -----WLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 110
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 111 LPEVFTKIGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 170
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF L + GYPG + F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 171 IFKQYSLPQHECGYPGSV-FNPLNFAP-----TLEAKEKELANGRLAMLAFLGFIVQHNV 224
Query: 228 TGTGPIDNLIAHLADPGHATV 248
TG GP +NL+ HL+DP H T+
Sbjct: 225 TGKGPFENLLQHLSDPWHNTI 245
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 149/268 (55%), Gaps = 38/268 (14%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLG--GKKLKLRKNGATAGTRSVSVSAAA 58
M+S A VAA+ R A + FLG G++L L K+ A R V+V A
Sbjct: 1 MSSGSARAPVAAL--------RPSASSPSPRFLGDSGRQLGLAKSLAR---RDVAVQAKG 49
Query: 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
W PG P +LDGSL GD GFDPL L E+V+ RWAMLG AG
Sbjct: 50 Q------WLPGLASPAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAG 103
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
+ IPELLTK G+L+ P WY AG+ YF ++TLF+VE I + E RRW DI PG VN
Sbjct: 104 MLIPELLTKAGLLSAPEWYDAGKETYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQ 163
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DPIF + L D GYPG + F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 164 DPIFKSYSLPDHDCGYPGSV-FNPLNFA-----PTLENKEKELANGRLAMLAFLGFLVQH 217
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP +NL+ HLADP H T+ F+
Sbjct: 218 NVTGKGPFENLMQHLADPWHNTIIQTFS 245
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 151/266 (56%), Gaps = 33/266 (12%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ + S + + ++FLG + G TA S+ A A
Sbjct: 1 MASVTARAPVAAL------RPSSASLKSSSAFLGHSS----RLGRTASPTRRSLKAEA-- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG P +LDGSL GD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 --KGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 106
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LTK G++N P WY AG+ EYF ++TLF+VE I + E RRW DI PG VN DP
Sbjct: 107 IPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDP 166
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 167 IFKSYSLPPHECGYPGSV-FNPLNFA-----PTLEAKEKELANGRLAMLAFLGFLIQHNV 220
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ F+
Sbjct: 221 TGKGPFDNLLQHLSDPWHNTIIQTFS 246
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 148/266 (55%), Gaps = 28/266 (10%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ S + ++ A+FLG R A+ RS+ A
Sbjct: 1 MASVTARAPVAALRP---SASLKSSSSSAAAFLGHSSRLGRTATASPTRRSLKAEAKGE- 56
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +LDGSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 57 -----WLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 111
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LTK G++N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 112 IPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 171
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E + KE+ NGRLAMLA + QH
Sbjct: 172 IFKSYSLPPHECGYPGSV-FNPLNFA-----PTLEAKEKELANGRLAMLAFLAFLIQHNV 225
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ +
Sbjct: 226 TGKGPFDNLLQHLSDPWHNTIIQTLS 251
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 147/266 (55%), Gaps = 36/266 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ S +S KS +FLG +L + A R+V A
Sbjct: 1 MASVTARTPVAALRSSASLKS---------TFLGQSSTRLAR--APTTRRNVRAEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +L+GSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+PE+LTK+G+++ P WY AG+ YF ++TLF++E I + E RRW DI PGCVN DP
Sbjct: 104 LPEVLTKIGLIDAPQWYDAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYP PL + E E + KE+ NGRLAMLA +G QH
Sbjct: 164 IFKSYSLPPHECGYPAAS-STPLNF-----EPTLEAKEKELANGRLAMLAFLGFLVQHNV 217
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
T GP DNL+ HL+DP H T+ +
Sbjct: 218 TQKGPFDNLLQHLSDPWHNTIIQTLS 243
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 150/266 (56%), Gaps = 33/266 (12%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ + S + + ++FLG + G TA S A A
Sbjct: 1 MASVTARAPVAAL------RPSSASLKSSSAFLGHSS----RLGRTASPTRRSXKAEA-- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG P +LDGSL GD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 --KGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 106
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LTK G++N P WY AG+ EYF ++TLF+VE I + E RRW DI PG VN DP
Sbjct: 107 IPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVVEFILFXYVEIRRWQDIKNPGSVNQDP 166
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 167 IFKSYSLPPHECGYPGSV-FNPLNFA-----PTLEAKEKELANGRLAMLAFLGFLIQHNV 220
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ F+
Sbjct: 221 TGKGPFDNLLQHLSDPWHNTIIQTFS 246
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 150/266 (56%), Gaps = 33/266 (12%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ + S + + ++FLG + G TA S+ A A
Sbjct: 1 MASVTARAPVAAL------RPSSASLKSSSAFLGHSS----RLGRTASPTRRSLKAEA-- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+ W PG P +LDGSL GD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 --KGEWLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGML 106
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LTK G++N P WY A + EYF ++TLF+VE I + E RRW DI PG VN DP
Sbjct: 107 IPEVLTKAGLINAPQWYDASKSEYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDP 166
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 167 IFKSYSLPPHECGYPGSV-FNPLNFA-----PTLEAKEKELANGRLAMLAFLGFLIQHNV 220
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP DNL+ HL+DP H T+ F+
Sbjct: 221 TGKGPFDNLLQHLSDPWHNTIIQTFS 246
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 145/266 (54%), Gaps = 36/266 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
M+SV A VAA+ R A A+ FLG R A + R V+V A +
Sbjct: 1 MSSVSARAPVAAL--------RPAASASSPRFLGDSG---RVGLAKSTRRDVAVQAKGS- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +LDGSL GD GFDPL L E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLQSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LTK G+LN P WY AG+ YF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 104 IPEVLTKAGLLNAPEWYDAGKETYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IF + L + GYPG + F+PL + E + KE+ NGRLAMLA +G QH
Sbjct: 164 IFKSYSLPPHECGYPGSV-FNPLNFA-----PTLENKEKELANGRLAMLAFLGFLVQHNV 217
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
TG GP +NL HLADP H T+ +
Sbjct: 218 TGKGPFENLQQHLADPWHNTIIQTIS 243
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 149/264 (56%), Gaps = 36/264 (13%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA- 59
MA+V A AAI P KSR FLGG KL + A R V S +A+
Sbjct: 1 MATVTTQ-ASAAIFGPCGLKSR---------FLGGSSGKLNRGVAF---RPVGCSPSASF 47
Query: 60 --DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
+ + W PG P +L GSLPGD GFDPLGL E+V+ RWAMLG A
Sbjct: 48 KVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVA 107
Query: 105 GIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
G+ +PE+ T +GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN
Sbjct: 108 GMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVN 167
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DPIF L +VGYPGG+ F+PL + E + KEI NGRL MLA +G Q
Sbjct: 168 QDPIFKQYSLPAGEVGYPGGI-FNPLNFAP-----TLEAKEKEIANGRL-MLAFLGFIIQ 220
Query: 225 HIYTGTGPIDNLIAHLADPGHATV 248
H TG GP DNL+ H++DP H T+
Sbjct: 221 HNVTGKGPFDNLLQHISDPWHNTI 244
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/202 (51%), Positives = 129/202 (63%), Gaps = 19/202 (9%)
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
+W PG+T P L LPGD+GFDPL L E+ H RWAMLG AG PE+
Sbjct: 1 MWMPGATAPAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEI 60
Query: 112 LTKLGILNTPSWYTAGELE-YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI-F 169
LT +GI N P+W+ A + YFTD TTLF V+M+ + WAE RRW DI KPG V+ DP F
Sbjct: 61 LTNMGISNLPNWHEAPSYDGYFTDATTLFWVQMLMMNWAEVRRWQDIRKPGSVSEDPTPF 120
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
N KL VGYPGG+ FDPLG+ G +K L+ KEI NGRLAM+A G Q+ +TG
Sbjct: 121 SNAKLPAGVVGYPGGI-FDPLGYAKGD---LKTLKAKEIANGRLAMVAFAGIMVQYDHTG 176
Query: 230 TGPIDNLIAHLADPGHATVFAA 251
GP+ NL++H+ADP H VFAA
Sbjct: 177 VGPVANLVSHMADPAHNNVFAA 198
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 19/245 (7%)
Query: 17 SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWL 76
+S S+ + ++FL G KL++ S + + + W PG P +L
Sbjct: 3 ASTMQASIGVSCPSTFLSGSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASPGYL 62
Query: 77 DGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSW 123
+GSLPGD GFDPLGL E+ + RWAM+G AG+ IPE+LTK+G++N P W
Sbjct: 63 NGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINAPLW 122
Query: 124 YTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 183
Y AG++EYF +TLF++E + + E RRW DI PG VN DPIF L +VGYPG
Sbjct: 123 YDAGKVEYFAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGYSLPPNEVGYPG 182
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
G+ F+PL + + +E + KE+ NGRLAMLA +G Q T GP +NL+ HL+DP
Sbjct: 183 GI-FNPLNFPAN-----EEYKEKELANGRLAMLAFLGFIIQSNVTHQGPFENLLTHLSDP 236
Query: 244 GHATV 248
H T+
Sbjct: 237 WHHTI 241
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 122/196 (62%), Gaps = 19/196 (9%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGSLPGD GF PLGL E+V+ RWAMLG AG+ +PE+
Sbjct: 5 WLPGLASPTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLPEVF 64
Query: 113 TKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
T +GILN P WY AG+ EYF ++TLF++E I + E RRW DI PG VN PIF N
Sbjct: 65 TNIGILNVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQXPIFKNY 124
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
L +VGYPGG+ F+PL + + E + KEI NGRLAMLA +G QH G GP
Sbjct: 125 SLPPNEVGYPGGI-FNPLNFAPTA-----EAKEKEIANGRLAMLAFLGFIVQHNVVGKGP 178
Query: 233 IDNLIAHLADPGHATV 248
DNL+ HL+DP H T+
Sbjct: 179 FDNLLQHLSDPWHNTI 194
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 124/201 (61%), Gaps = 19/201 (9%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P++L GSL GD GFDPLGL E+V+ RWAMLG AG+ +PE+
Sbjct: 58 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 117
Query: 113 TKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
TKLGI+N P WY AG+ +YF ++TLF++E I + E RRW DI PG VN DPIF
Sbjct: 118 TKLGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 177
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
L +VGYPGG+ F+PL + E + KEI NGRLAMLA +G QH TG GP
Sbjct: 178 SLPKGEVGYPGGI-FNPLNFAP-----TLEAKEKEIANGRLAMLAFLGFVVQHNVTGKGP 231
Query: 233 IDNLIAHLADPGHATVFAAFT 253
+NL+ HL+DP H T+ +
Sbjct: 232 FENLLQHLSDPWHNTIVQTLS 252
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 141/245 (57%), Gaps = 19/245 (7%)
Query: 17 SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWL 76
+S S+ + ++FL KL++ S + + + W PG P +L
Sbjct: 3 ASTMQASIGVSCPSTFLSRSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASPGYL 62
Query: 77 DGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSW 123
+GSLPGD GFDPLGL E+ + RWAM+G AG+ IPE+LTK+G++N P W
Sbjct: 63 NGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVINAPLW 122
Query: 124 YTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 183
Y AG++EYF +TLF++E + + E RRW DI PG VN DPIF L +VGYPG
Sbjct: 123 YDAGKVEYFAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPIFKGYSLPPNEVGYPG 182
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
G+ F+PL + + +E + KE+ NGRLAMLA +G Q T GP +NL+ HL+DP
Sbjct: 183 GI-FNPLNFPAN-----EEYKEKELANGRLAMLAFLGFIIQSNVTHQGPFENLLTHLSDP 236
Query: 244 GHATV 248
H T+
Sbjct: 237 WHHTI 241
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 136/228 (59%), Gaps = 18/228 (7%)
Query: 42 KNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---------- 91
+N A S+ ++ +D RP+W PG +PP+ LDGSL GDFGFDPL L
Sbjct: 23 RNAHCARFLSIRAQSSGSD-ERPIWLPGLSPPQHLDGSLAGDFGFDPLELGKDPETLRWY 81
Query: 92 ---EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIG 147
E+VH R+AM G AGI + +LL +G + P WY AG E+ F DT TLF+V++I +G
Sbjct: 82 VQAELVHSRFAMAGIAGILVTDLLRTVGGRDLPVWYEAGATEFEFADTRTLFVVQLILMG 141
Query: 148 WAEGRRWADIIKPGCVNTDPIFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 205
+AE RR+ D I PG F + L G GYPGG +FDP G G + L+
Sbjct: 142 YAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGYPGGPFFDPAGLGR-DINNARTLKE 200
Query: 206 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
KE+KNGRLAM+A++G + Q +T TGPIDNL+ H++DP H T+ +
Sbjct: 201 KELKNGRLAMVAILGVFVQAFFTKTGPIDNLLTHVSDPWHNTIVQTLS 248
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 126/205 (61%), Gaps = 21/205 (10%)
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
P P P +T P +LDG+LPGDFGFDPL L E+VH R+AML AGI
Sbjct: 56 PAFPAGCPAATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGIL 115
Query: 108 IPELLTKLGIL---NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+PELLT +G +WY AG+ +YF ++LF V+M+ WAE RR+ D +KPG N
Sbjct: 116 VPELLTNIGFSWPGAGVAWYDAGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVKPGSAN 175
Query: 165 TDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DPIF NNKL G + GYPGG+ FDP GW G +K L+TKEIKNGRLAMLA G
Sbjct: 176 QDPIFSNNKLPDGNEPGYPGGI-FDPFGWSKGD---MKSLKTKEIKNGRLAMLAFAGFAA 231
Query: 224 QHIYTGTGPIDNLIAHLADPGHATV 248
Q TGT P+ NL HLADP TV
Sbjct: 232 QAYTTGTTPLKNLATHLADPWATTV 256
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 134/240 (55%), Gaps = 28/240 (11%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGF 86
A+ FLG R A + R V+V A + W PG P +LDGSL GD GF
Sbjct: 2 ASSPRFLGDSG---RVGLAKSTRRDVAVQAKGS------WLPGLQSPAYLDGSLAGDNGF 52
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFT 133
DPL L E+V+ RWAMLG AG+ IPE+LTK G+LN P WY AG+ YF
Sbjct: 53 DPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGKETYFA 112
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
++TLF++E I + E RRW DI PG VN DPIF + L + GYPG + F+PL +
Sbjct: 113 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSV-FNPLNFA 171
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
E + KE+ NGRLAMLA +G QH TG GP +NL HLADP H T+ +
Sbjct: 172 P-----TLENKEKELANGRLAMLAFLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 226
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/203 (48%), Positives = 129/203 (63%), Gaps = 17/203 (8%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
RPLW PG+TPP LDG+L GDFGFDPLGL E+VH R+AM G AGI
Sbjct: 1 ERPLWLPGTTPPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILF 60
Query: 109 PELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+LL G + P W+ AG ++ F DTTTLF+V++I +G+ E +RW DI+KPG +
Sbjct: 61 TDLLRASGRTDIPVWFEAGATKFDFADTTTLFVVQLILMGFVETKRWMDIVKPGSQAAED 120
Query: 168 IFPNNK--LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
F + G + GYPGG F+PLG+ + P K + LR KEIKNGRLAM+A++G Q
Sbjct: 121 SFFGFEAAFEGLETGYPGGPLFNPLGFAN-DPTKPQPLRWKEIKNGRLAMVAMVGFMVQA 179
Query: 226 IYTGTGPIDNLIAHLADPGHATV 248
T TGPI+NL+ HL+DP H T+
Sbjct: 180 YVTKTGPIENLLTHLSDPVHNTI 202
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 129/211 (61%), Gaps = 23/211 (10%)
Query: 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGA 103
A D P W PG+ P +L+G+LPGDFGFDPL L E+++ R+AML
Sbjct: 52 AKRDAALPSWMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAV 111
Query: 104 AGIFIPELLTKLGILNTP----SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
AGI +PELL+ +G + P +WY AG+ EYF ++LF V+M+ W E RR+ D +K
Sbjct: 112 AGILVPELLSNIG-FSWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVK 170
Query: 160 PGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
PG N DPIF NNKL G + GYPGG+ FDP GW G +K L+ KEIKNGRLAMLA
Sbjct: 171 PGSANQDPIFTNNKLPDGNEPGYPGGI-FDPFGWSKGD---IKSLKLKEIKNGRLAMLAF 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
G Q TGT P+ NL HLADP TV+
Sbjct: 227 AGFIGQAYTTGTTPLKNLSTHLADPWSTTVW 257
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 129/211 (61%), Gaps = 23/211 (10%)
Query: 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGA 103
A D P W PG+ P +L+G+LPGDFGFDPL L E+++ R+AML
Sbjct: 52 AKRDAALPSWMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAV 111
Query: 104 AGIFIPELLTKLGILNTP----SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
AGI +PELL+ +G + P +WY AG+ EYF ++LF V+M+ W E RR+ D +K
Sbjct: 112 AGILVPELLSNIG-FSWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVK 170
Query: 160 PGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
PG N DPIF NNKL G + GYPGG+ FDP GW G +K L+ KEIKNGRLAMLA
Sbjct: 171 PGSANQDPIFTNNKLPDGNEPGYPGGI-FDPFGWSKGD---IKSLKLKEIKNGRLAMLAF 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
G Q TGT P+ NL HLADP TV+
Sbjct: 227 AGFIGQAYTTGTTPLKNLSTHLADPWSTTVW 257
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 134/227 (59%), Gaps = 26/227 (11%)
Query: 41 RKNGATAGTRSVSVSAAAAD----PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
R N + +RSVS +A A R +W+PG P LDGSLPGDFGFDPLGL
Sbjct: 8 RVNTSALKSRSVSRQSARASFVVKAQRDVWWPGVDAPAHLDGSLPGDFGFDPLGLSVDPE 67
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEM 143
E+ H RWAMLG AG+ P+L +TPSW AG+ EY+ LF ++M
Sbjct: 68 MKKWMVQAELQHARWAMLGVAGMVGPDLAP----WDTPSWIEAGKFEYWAPAGPLFFIQM 123
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNN-KLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 202
+ WAE RRW D+ PG +N DP+F N T TDVGYPGGL FD LG+ + + +
Sbjct: 124 AMMNWAEVRRWQDMKDPGSMNKDPLFGYNANDTNTDVGYPGGL-FDKLGY---AKKDLDT 179
Query: 203 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
L+ KEIKNGRLAM+A+ G + Q TG P+ NL +H+A+PG +F
Sbjct: 180 LKLKEIKNGRLAMVAIAGCFVQGATTGVSPLTNLTSHIANPGAVNIF 226
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 107/168 (63%), Gaps = 15/168 (8%)
Query: 42 KNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---------- 91
+ GAT G VS P+RPLWFPGS+PP WLDGSLPGDFGFDPLGL
Sbjct: 5 RAGATKG--GVSAVCEPLGPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWF 62
Query: 92 ---EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGW 148
E++H RWAML AGI +PE+L K G + SW AG +YF D TLF+ +M +GW
Sbjct: 63 AQAELMHSRWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMGW 122
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 196
AEGRRWAD + PGCV +P PN + DVGYPGGLWFD WG GS
Sbjct: 123 AEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGS 170
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 145/245 (59%), Gaps = 23/245 (9%)
Query: 23 SVAGATKAS-FLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLP 81
SV+ +AS FLG K + + ATA + AA +RPLW PG P +LDGSLP
Sbjct: 4 SVSQMIQASTFLGSKVAPVAR--ATAAKPQAKFAVFAAKADRPLWCPGIPAPSYLDGSLP 61
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE 128
GDFG+DPL L E+ + RWAMLG AG+ +LL + N P WY A
Sbjct: 62 GDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGMLSVDLLQGILPDNVPQWYDAPL 121
Query: 129 LE--YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV-GYPGGL 185
L Y + +LFI++MI +G+ E RRWADI PG N DP+F NNKL + GYPGG+
Sbjct: 122 LADVYPAEWKSLFIIQMILMGFVEARRWADINTPGSANVDPVFNNNKLPDSGTPGYPGGM 181
Query: 186 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
FDPLG+ G+ ++E + KE++NGRLAM+A +G + Q+ TG P+ NL HLADP H
Sbjct: 182 -FDPLGFSKGN---LEESKWKELRNGRLAMVASLGMFIQYDATGKSPLTNLADHLADPWH 237
Query: 246 ATVFA 250
V A
Sbjct: 238 NNVCA 242
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 140/241 (58%), Gaps = 30/241 (12%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGF 86
A++A+ L + L+L + A + V V A R W PGS P +L G LPGDFGF
Sbjct: 9 ASRAAIL--RHLELLLTVSAARSARVVVRA-----ERASWLPGSEIPSYLKGELPGDFGF 61
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI----LNTPSWYTAGEL 129
DPL L E+ + RWAML AAGI +LL LG TP W+ A +
Sbjct: 62 DPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLGAGGPAAATP-WFKASDF 120
Query: 130 EYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFD 188
YF T+TLFIVE++ W E RR+ D++KPG N DPIF L +G + GYPGG+ FD
Sbjct: 121 TYFAPTSTLFIVELLLFAWVEVRRYQDMVKPGSTNQDPIFSQYSLPSGNEPGYPGGI-FD 179
Query: 189 PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
PLG+ G+ + EL+ KEIKN RLAMLAV+G + Q TG P+D+L +HLADP V
Sbjct: 180 PLGYSKGN---MAELKLKEIKNARLAMLAVLGFFVQAKTTGKTPLDSLSSHLADPWSNNV 236
Query: 249 F 249
F
Sbjct: 237 F 237
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 126/215 (58%), Gaps = 22/215 (10%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHC 96
RSV V AA RP+WFPG+ PP LDGSL GD+GFDPL L E+VH
Sbjct: 21 RSVRVKAA----TRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHG 76
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL---EYFTDTTTLFIVEMIFIGWAEGRR 153
R+AMLGAAGI + + K+G L P WY AG++ + D TL I ++ +GWAE +R
Sbjct: 77 RFAMLGAAGIILTSIGAKVG-LGFPEWYDAGKVVVEKNNIDFPTLLITQLYLMGWAETKR 135
Query: 154 WADIIKPGCVNTDPIFP-NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
W D PG ++ G + GYPGG +FDP+G G +K KE + KEIKNGR
Sbjct: 136 WYDFKNPGSQGDGSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQKEIKNGR 195
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
LAM+A +G Q+ TG GP+DNL HLADP H
Sbjct: 196 LAMIACLGFAAQYAATGKGPLDNLADHLADPNHVN 230
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 130/226 (57%), Gaps = 17/226 (7%)
Query: 40 LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
LR A G AA RP W PG PP +LDG+LPGDFGFDPLGL
Sbjct: 35 LRPAAAGTGVTPRCKQICAAAQQRPTWLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLK 94
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIF 145
E+VH R+AMLG GI + +LL G+ + P W+ AG ++Y F +T TL +V+++
Sbjct: 95 WYVQAELVHSRFAMLGVLGILVTDLLRVAGVNSIPIWFEAGAVKYEFANTGTLVVVQLLL 154
Query: 146 IGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
+G+AE RR+ D + PG + F L G + GYPGG +PLG + +E
Sbjct: 155 MGYAETRRYMDFVSPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAK-DIKSAREW 213
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
+ KEIKNGRLAM+A++G + Q T GPIDNL+ HL++P H T+
Sbjct: 214 KLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTII 259
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 120/200 (60%), Gaps = 21/200 (10%)
Query: 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGA 103
A D P W PG+ P +L+G+LPGDFGFDPL L E+++ R+AML
Sbjct: 38 AKRDAALPSWMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAV 97
Query: 104 AGIFIPELLTKLGIL---NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKP 160
AGI +PELL+ +G +WY AG+ EYF ++LF V+M+ W E RR+ D +KP
Sbjct: 98 AGILVPELLSNIGFSWPGAGVAWYDAGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVKP 157
Query: 161 GCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
G N DPIF NNKL G + GYPGG+ FDP GW G +K L+ KEIKNGRLAMLA
Sbjct: 158 GSANQDPIFTNNKLPDGNEPGYPGGI-FDPFGWSKGD---IKSLKLKEIKNGRLAMLAFA 213
Query: 220 GAWFQHIYTGTGPIDNLIAH 239
G Q TGT P+ NL H
Sbjct: 214 GFIGQAYTTGTTPLKNLSTH 233
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 126/221 (57%), Gaps = 24/221 (10%)
Query: 45 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
A R+V AA RP+WFPG+ PP LDGSL GD+GFDPL L
Sbjct: 16 ARQAPRAVRAQAAV----RPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQA 71
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL---EYFTDTTTLFIVEMIFIGW 148
E+VH R+AMLGAAGI + + K+G L P WY AG++ + D TL +++ +GW
Sbjct: 72 ELVHGRFAMLGAAGIILTSIGAKVG-LGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGW 130
Query: 149 AEGRRWADIIKPGCVNTDPIFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
AE +RW D PG D F + G + GYPGG +FDP+G G K +E + K
Sbjct: 131 AETKRWYDFKNPGS-QADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQK 189
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
E+KNGRLAM+A +G Q+ TG GP+DNL HLADP H
Sbjct: 190 EVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVN 230
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 126/221 (57%), Gaps = 24/221 (10%)
Query: 45 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
A R+V AA RP+WFPG+ PP LDGSL GD+GFDPL L
Sbjct: 16 ARQAPRAVRAQAAV----RPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQA 71
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL---EYFTDTTTLFIVEMIFIGW 148
E+VH R+AMLGAAGI + + K+G L P WY AG++ + D TL +++ +GW
Sbjct: 72 ELVHGRFAMLGAAGIILTSIGAKVG-LGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGW 130
Query: 149 AEGRRWADIIKPGCVNTDPIFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
AE +RW D PG D F + G + GYPGG +FDP+G G K +E + K
Sbjct: 131 AETKRWYDFKNPGS-QADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQK 189
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
E+KNGRLAM+A +G Q+ TG GP+DNL HLADP H
Sbjct: 190 EVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVN 230
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 119/204 (58%), Gaps = 17/204 (8%)
Query: 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
A A R W PG PP LDG+LPGDFGFDPLGL E+VHCR+AM G
Sbjct: 47 AVRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAG 106
Query: 103 AAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
AGI +L+ GI N P W+ AG ++ F +TT LF V+++ +G+AE +R+ D I PG
Sbjct: 107 VAGILATDLIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPG 166
Query: 162 CVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
+ F L G+ GYPGG F+PLG E E + KEIKNGRLAM+A++
Sbjct: 167 SQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAK-DIENADEAKLKEIKNGRLAMVAML 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G Q T GPIDNL+ HL+DP
Sbjct: 226 GFIVQASVTHVGPIDNLLTHLSDP 249
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 141/266 (53%), Gaps = 21/266 (7%)
Query: 5 CASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGA--TAGTRSVSVSAAAADPN 62
C + V+A+ SS + ++ S L + G + G R +V A
Sbjct: 7 CKAFRVSALKDSSSIFTNNINTYQTLSLNKVTSLPAKSRGIFHSHGRRLCTVVRAQ---Q 63
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
RP W PG PP +LDG+L GDFGFDPLGL E+VH R+AM G AGI
Sbjct: 64 RPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFT 123
Query: 110 ELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
+LL G+ N P WY AG ++ F +TTTLFIV+M+ +G+ E +R+ D PG
Sbjct: 124 DLLRTTGLSNLPVWYEAGATKFQFANTTTLFIVQMLLMGFVETKRYMDFKNPGSQGEASF 183
Query: 169 F-PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
F L G + GYPGG +PLG + E + KEIKNGRLAM+A++G + Q
Sbjct: 184 FGLEAALEGLEPGYPGGPILNPLGIAK-DIKNAPEWKLKEIKNGRLAMVAILGIFVQASV 242
Query: 228 TGTGPIDNLIAHLADPGHATVFAAFT 253
T GP++NL+ HL+DP H T+ +
Sbjct: 243 THVGPLENLVEHLSDPWHTTIIQILS 268
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 119/221 (53%), Gaps = 25/221 (11%)
Query: 44 GATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------ 91
A RS S + +RPLW PGSTPP L G LPGDFGFDPLGL
Sbjct: 10 AARPSARSARRSVVSKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANAESLKWFKE 69
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG-ELEYFTDTTTLFIVEMIFIGWA 149
E+VHCRWAM AGI + E+ + WY AG E+E L VE + W
Sbjct: 70 SELVHCRWAMAAVAGILVQEI-----VRPDVFWYNAGKEVESPLGPLGLLAVEFFLMHWV 124
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
E RRW D+ KPG V+ DPIF KL +VGYPGG+ F P P + EL+ KEIK
Sbjct: 125 ELRRWQDLRKPGSVDQDPIFSQYKLPAHEVGYPGGV-FAPF-----IPGDLAELKVKEIK 178
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
NGRLAMLA +G TG GPI L HLADP T+F+
Sbjct: 179 NGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPFGTTIFS 219
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 124/208 (59%), Gaps = 17/208 (8%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
R W PG PP +LDG+LPGD+GFDPLGL E+VHCR+AM G AGI
Sbjct: 51 ERATWLPGLDPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILG 110
Query: 109 PELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+L+ GI N P W+ AG ++ F +TT LF V+++ +G+ E +R+ DI+ PG +
Sbjct: 111 TDLIRVSGISNLPVWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDIVNPGSQAEEG 170
Query: 168 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
F L G GYPGG F+P+G + E++ KEIKNGRLAM+A++G + Q
Sbjct: 171 TFLGIEASLEGLQPGYPGGPLFNPMGLAKDI-KNAHEVKLKEIKNGRLAMVAMLGFFVQA 229
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
T GPIDNL+ HL+DP + + AFT
Sbjct: 230 SVTHVGPIDNLLIHLSDPFNNNIIHAFT 257
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 128/221 (57%), Gaps = 17/221 (7%)
Query: 45 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
+ AGT AA RP W PG PP +LDG+L GD+GFDPLGL
Sbjct: 39 SRAGTTPRCRQICAAMQPRPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQA 98
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAE 150
E+VH R+AMLG GI + +LL G+ P W+ AG ++Y FT+T TL IV+++ +G+AE
Sbjct: 99 ELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAE 158
Query: 151 GRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
+R+ D I PG + F G + GYPGG +PLG + +E + KEI
Sbjct: 159 TKRYMDFIGPGSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAK-DIKNARESKLKEI 217
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
KNGRLAM+A++G + Q T GPIDNL+ HL++P H TV
Sbjct: 218 KNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVI 258
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 126/221 (57%), Gaps = 17/221 (7%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVH 95
+R + A A +R W PG PP LDG+L GDFGFDPLGL E+VH
Sbjct: 36 SRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVH 95
Query: 96 CRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRW 154
CR+AMLG +G+ + +LL GI P WY AG +EY F + TLFIV+++ +G+ E +R+
Sbjct: 96 CRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRY 155
Query: 155 ADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
D PG + F G + GYPGG +PLG + + + KEIKNGR
Sbjct: 156 MDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGR 214
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
LAM+A++G + Q T TGPIDNL+ HL++P H T+ +
Sbjct: 215 LAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLS 255
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 133/255 (52%), Gaps = 30/255 (11%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST 71
A++ S S+S A A+F G + A R V+VSAA +R +WFPG+
Sbjct: 4 AVAMSSLLGSKSAVAARPAAFSG------KARTARVQARFVAVSAA----DRQVWFPGNA 53
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGIL 118
P LDGSLPGDFGFDPL L E+VH R AM AGI P + TK G++
Sbjct: 54 PAPHLDGSLPGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAGVV 113
Query: 119 NTPSWYTAGELEYFTDTT----TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF--PNN 172
N P WY AG + + L +++I GW E +RW D PG D F +
Sbjct: 114 NIPQWYDAGSVWVQNNPNFPFAALLFIQIILTGWVETKRWLDFKNPGS-QADGSFLGVTD 172
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
G GYPGG FDP G GS ++++ + EIKNGRLAM+A +G QH TG GP
Sbjct: 173 DFKGVANGYPGGKLFDPFGLSRGSEGQLQKYQENEIKNGRLAMVAFLGFIAQHAATGKGP 232
Query: 233 IDNLIAHLADPGHAT 247
IDNL HLA+P T
Sbjct: 233 IDNLADHLANPTAVT 247
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 120/208 (57%), Gaps = 17/208 (8%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
RP W PG PP LDG+LPGDFGFDPLGL E+VHCR+AM G AGI
Sbjct: 58 QRPTWLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILF 117
Query: 109 PELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+LL G + P W+ AG ++ F +TT LF V+++ +G+AE +R+ D PG +
Sbjct: 118 TDLLRVSGNSDLPVWFEAGAAKFEFANTTALFFVQLLLMGFAETKRYMDFKNPGSQAEEG 177
Query: 168 IFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
F L G GYPGG F+PLG E E + KEIKNGRLAM+A++G Q
Sbjct: 178 TFIGLEAALAGQQPGYPGGPLFNPLGLAK-DIENAHEEKLKEIKNGRLAMVAMLGFMVQA 236
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
T GPIDNL+ HL+DP + + AF+
Sbjct: 237 SVTHAGPIDNLLTHLSDPFNKNIIHAFS 264
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 118/204 (57%), Gaps = 17/204 (8%)
Query: 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
A A R W PG PP LDG+LPGDFGFDPLGL E+VHCR+AM G
Sbjct: 47 AVRASTERATWLPGLDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAG 106
Query: 103 AAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
AGI + + GI N P W+ AG ++ F +TT LF V+++ +G+AE +R+ D I PG
Sbjct: 107 VAGILATDFIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFINPG 166
Query: 162 CVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
+ F L G+ GYPGG F+PLG E E + KEIKNGRLAM+A++
Sbjct: 167 SQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAK-DIENADEAKLKEIKNGRLAMVAML 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G Q T GPIDNL+ HL+DP
Sbjct: 226 GFIVQASVTHVGPIDNLLTHLSDP 249
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 123/214 (57%), Gaps = 17/214 (7%)
Query: 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
A RP W PG P +LDG+L GD+GFDPLGL E+VH R+AMLG
Sbjct: 53 AVVRAQQRPTWLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLG 112
Query: 103 AAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
AGI +LL GI P WY AG ++Y F T TL +V+++++G+AE RR+ D + PG
Sbjct: 113 IAGILFTDLLRVTGIRKLPVWYEAGAVKYEFASTRTLLVVQLLWMGYAETRRYMDYVSPG 172
Query: 162 CVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
N + F L G + GYPGG +P G ++ + KEIKNGRLAM+A++
Sbjct: 173 SQNKEGSFFGMEAALEGLEPGYPGGPLLNPFGLAK-DIRSARDWKLKEIKNGRLAMVAML 231
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q T TGPIDNL+ HL+DP H T+ +
Sbjct: 232 GIFVQAAVTHTGPIDNLLEHLSDPWHKTIIQTLS 265
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 135/238 (56%), Gaps = 25/238 (10%)
Query: 35 GKKLKLRKNGATAGTRSVS-VSAAAADPN------RPLWFPGSTPPEWLDGSLPGDFGFD 87
G L R++ ++ TR +S V AA N R W PG PP +LDG+L GD+GFD
Sbjct: 11 GGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFD 70
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FT 133
PLGL E+VH R+AMLG AGI +LL GI N P WY AG +++ F
Sbjct: 71 PLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFA 130
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPL 190
T TL +V+ + +G+AE +R+ D + PG + F L G + GYPGG +PL
Sbjct: 131 STKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPL 190
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
G + + + KEIKNGRLAM+A++G + Q T TGPIDNL+ HL++P H T+
Sbjct: 191 GLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 135/238 (56%), Gaps = 25/238 (10%)
Query: 35 GKKLKLRKNGATAGTRSVS-VSAAAADPN------RPLWFPGSTPPEWLDGSLPGDFGFD 87
G L R++ ++ TR +S V AA N R W PG PP +LDG+L GD+GFD
Sbjct: 3 GGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFD 62
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FT 133
PLGL E+VH R+AMLG AGI +LL GI N P WY AG +++ F
Sbjct: 63 PLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFA 122
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPL 190
T TL +V+ + +G+AE +R+ D + PG + F L G + GYPGG +PL
Sbjct: 123 STKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPL 182
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
G + + + KEIKNGRLAM+A++G + Q T TGPIDNL+ HL++P H T+
Sbjct: 183 GLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 239
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 123/214 (57%), Gaps = 17/214 (7%)
Query: 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
A A R W PG PP +LDG+LPGD+GFDPLGL E+VHCR+AM G
Sbjct: 43 AVRAIAERATWLPGLDPPAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAG 102
Query: 103 AAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
AGI +L+ GI N P W+ AG ++ F +TT LF V+++ +G+ E +R+ D + PG
Sbjct: 103 VAGILGTDLIRVSGIGNLPVWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDFVSPG 162
Query: 162 CVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
+ F L G GYPGG F+P+G E E++ KEIKNGRLAM+A++
Sbjct: 163 SQAKEGTFLGIEASLEGLQPGYPGGPLFNPMGLAK-DIENANEVKLKEIKNGRLAMVAML 221
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G Q T GPIDNL+ HL+DP + + A T
Sbjct: 222 GFIVQASVTHAGPIDNLLTHLSDPFNKNIIHALT 255
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 135/238 (56%), Gaps = 25/238 (10%)
Query: 35 GKKLKLRKNGATAGTRSVS-VSAAAADPN------RPLWFPGSTPPEWLDGSLPGDFGFD 87
G L R++ ++ TR +S V AA N R W PG PP +LDG+L GD+GFD
Sbjct: 11 GGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFD 70
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FT 133
PLGL E+VH R+AMLG AGI +LL GI N P WY AG +++ F
Sbjct: 71 PLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFA 130
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPL 190
T TL +V+ + +G+AE +R+ D + PG + F L G + GYPGG +PL
Sbjct: 131 STKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPL 190
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
G + + + KEIKNGRLAM+A++G + Q T TGPIDNL+ HL++P H T+
Sbjct: 191 GLAK-DVKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHXTI 247
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 135/238 (56%), Gaps = 25/238 (10%)
Query: 35 GKKLKLRKNGATAGTRSVS-VSAAAADPN------RPLWFPGSTPPEWLDGSLPGDFGFD 87
G L R++ ++ TR +S V AA N R W PG PP +LDG+L GD+GFD
Sbjct: 11 GGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFD 70
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FT 133
PLGL E+VH R+AMLG AGI +LL GI N P WY AG +++ F
Sbjct: 71 PLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFA 130
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPL 190
T TL +V+ + +G+AE +R+ D + PG + F L G + GYPGG +PL
Sbjct: 131 CTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPL 190
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
G + + + KEIKNGRLAM+A++G + Q T TGPIDNL+ HL++P H T+
Sbjct: 191 GLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 126/226 (55%), Gaps = 19/226 (8%)
Query: 43 NGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------- 91
+GA A R A RP W PG PP LDG+L GDFGFDPLGL
Sbjct: 36 DGAAATPRYRQTCVGAQ--QRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYV 93
Query: 92 --EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGW 148
E+VHCR+AMLG GI + +LL GI P W+ AG ++Y F +T TLF+V+++ +G+
Sbjct: 94 QAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGF 153
Query: 149 AEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
E +R+ D + PG + F L G + GYPGG +PLG + + K
Sbjct: 154 VETKRYMDFVSPGSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAK-DINNAHDWKLK 212
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
EIKNGRLAM+A++G + Q T GPIDNL+ HL++P H T+
Sbjct: 213 EIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTL 258
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 122/206 (59%), Gaps = 17/206 (8%)
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
RP W PG PP +LDG+L GD+GFDPLGL E+VH R+AMLG GI +
Sbjct: 4 RPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVT 63
Query: 110 ELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
+LL G+ P W+ AG ++Y FT+T TL IV+++ +G+AE +R+ D I PG +
Sbjct: 64 DLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAKEGS 123
Query: 169 F--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
F G + GYPGG +PLG + +E + KEIKNGRLAM+A++G + Q
Sbjct: 124 FFGLEASFEGLEPGYPGGPLLNPLGLAK-DIKNARESKLKEIKNGRLAMVAILGIFVQAS 182
Query: 227 YTGTGPIDNLIAHLADPGHATVFAAF 252
T GPIDNL+ HL++P H TV
Sbjct: 183 VTHVGPIDNLVEHLSNPWHKTVIQTL 208
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 134/238 (56%), Gaps = 25/238 (10%)
Query: 35 GKKLKLRKNGATAGTRSVS-VSAAAADPN------RPLWFPGSTPPEWLDGSLPGDFGFD 87
G L R++ ++ TR +S V AA N R W PG PP +LDG L GD+GFD
Sbjct: 11 GGFLHQRRDTSSVITRRISSVRAAGGGINPTVAVERATWLPGLDPPPYLDGKLAGDYGFD 70
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FT 133
PLGL E+VH R+AMLG AGI +LL GI N P WY AG +++ F
Sbjct: 71 PLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFA 130
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPL 190
T TL +V+ + +G+AE +R+ D + PG + F L G + GYPGG +PL
Sbjct: 131 STKTLIVVQFLLMGFAETKRYVDYVSPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPL 190
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
G + + + KEIKNGRLAM+A++G + Q T TGPIDNL+ HL++P H T+
Sbjct: 191 GLAK-DIKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 120/225 (53%), Gaps = 27/225 (12%)
Query: 42 KNGATA--GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
KN A RS S A +RPLW PGSTPP L G LPGDFGFDPLGL
Sbjct: 6 KNAVAARPSARSARRSVVAKASSRPLWLPGSTPPAHLKGDLPGDFGFDPLGLGANAESLK 65
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG-ELEYFTDTTTLFIVEMIF 145
E+VH RWAM AGI + E+ + WY AG E+E L VE
Sbjct: 66 WFKESELVHSRWAMAAVAGILVQEI-----VRPDVFWYNAGKEVESPLGPLGLLAVEFFL 120
Query: 146 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 205
+ W E RRW D+ KPG V+ DPIF KL +VGYPGG+ F P P + EL+
Sbjct: 121 MHWVEVRRWQDLRKPGSVDQDPIFSQYKLPPHEVGYPGGV-FAPF-----IPGDLAELKV 174
Query: 206 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KEIKNGRLAMLA +G TG GPI L HLADP T+F+
Sbjct: 175 KEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPWGTTIFS 219
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 145/281 (51%), Gaps = 41/281 (14%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MA++ A A+ SPS G + LGGK L L + + R+ + A
Sbjct: 1 MAAITAK----ALVSPSLSAIGGDIGRRQQLLLGGKALVLPPYFSQSSRRTSFTVRSQAS 56
Query: 61 PNRP-------LWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVH 95
N+P LWF +LDGSLPGD+GFDPLGL EI++
Sbjct: 57 SNKPVKQGDRQLWFASDQSLSYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIIN 116
Query: 96 CRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVEMIFI 146
R+AMLGA G PE+L KLG++ + W+ AG Y+ D TLF++EM +
Sbjct: 117 GRYAMLGAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYNYWADPFTLFVLEMALM 176
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELR 204
G+AE RR D PG + K G + YPGG F+PLG+G + +KEL+
Sbjct: 177 GFAEHRRLQDYRNPGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGK-DEKSMKELK 235
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP H
Sbjct: 236 LKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVH 276
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 126/223 (56%), Gaps = 21/223 (9%)
Query: 41 RKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
R+ GA + R + A RP+WFPG+ P LDG+L GD+GFDPL L
Sbjct: 9 RRAGAFS-ARQAPRAVRAQALTRPVWFPGNPAPAHLDGTLAGDYGFDPLFLGQEKETLRW 67
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL---EYFTDTTTLFIVEMI 144
E+VH R+AMLGAAGI + + K+G L P WY AG++ + D TL +++
Sbjct: 68 YVQAELVHGRFAMLGAAGIILTSIGAKVG-LGFPEWYDAGKVVVEKNNIDFPTLIVIQFY 126
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 202
+GWAE +RW D PG D F + G + GYPGG +FDP+G G K E
Sbjct: 127 LMGWAETKRWYDFKNPGS-QADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYAE 185
Query: 203 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
+ KE+KNGRLAM+A +G Q+ TG GP+DNL HLADP H
Sbjct: 186 YKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLSDHLADPNH 228
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 118/208 (56%), Gaps = 17/208 (8%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
R W PG PP +LDG+LPGDFGFDPLGL E+VHCR+AM G AGI
Sbjct: 107 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 166
Query: 109 PELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+LL G + P W+ AG ++ F +TT LF V++ +G+AE +R+ D PG +
Sbjct: 167 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 226
Query: 168 IFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
F L G GYPGG F+PLG E + + KEIKNGRLAM+A++G Q
Sbjct: 227 TFIGLEAALAGQQPGYPGGPLFNPLGLAKDI-ENAHDEKLKEIKNGRLAMVAMLGFMVQA 285
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
T GPIDNL+ HL+DP + + F+
Sbjct: 286 SVTHAGPIDNLLTHLSDPFNKNIIHTFS 313
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 118/208 (56%), Gaps = 17/208 (8%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
R W PG PP +LDG+LPGDFGFDPLGL E+VHCR+AM G AGI
Sbjct: 61 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 120
Query: 109 PELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+LL G + P W+ AG ++ F +TT LF V++ +G+AE +R+ D PG +
Sbjct: 121 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 180
Query: 168 IFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
F L G GYPGG F+PLG E + + KEIKNGRLAM+A++G Q
Sbjct: 181 TFIGLEAALAGQQPGYPGGPLFNPLGLAK-DIENAHDEKLKEIKNGRLAMVAMLGFMVQA 239
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
T GPIDNL+ HL+DP + + F+
Sbjct: 240 SVTHAGPIDNLLTHLSDPFNKNIIHTFS 267
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 103/157 (65%), Gaps = 6/157 (3%)
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEG 151
E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF ++TLF++E I + E
Sbjct: 11 ELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEI 70
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
RRW DI PG VN DPIF L +VGYPGG+ F+PL + E + KEI NG
Sbjct: 71 RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP-----TLEAKEKEIANG 124
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
RLAMLA +G QH TG GP DNL+ H++DP H T+
Sbjct: 125 RLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 161
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 148/282 (52%), Gaps = 42/282 (14%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAG-ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA 59
MA+ A AVA +Q+ R + G A + SF G + S+ V A++
Sbjct: 1 MATTVACRAVAGAVFAPAQEQRLMGGNALRVSF--------APIGTSNARSSIVVRASSD 52
Query: 60 DP---NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRW 98
P NR L F +LDGSLPGD+GFDPLGL EI++ R+
Sbjct: 53 KPVKANRQLIFASEQSLSYLDGSLPGDYGFDPLGLSDPQGAGGFIDPNWLRYAEIINGRF 112
Query: 99 AMLGAAGIFIPELLTKLGILNTPS---WYTAG------ELEYFTDTTTLFIVEMIFIGWA 149
AMLGAAG PE+ K+G++ + W+ G + Y+ D TLF++EM +G+A
Sbjct: 113 AMLGAAGAIAPEIFGKIGLIPQETAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFA 172
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
E RR D KPG + K+ G D YPGG F+ LG+G + +K+L+ KE
Sbjct: 173 EHRRAQDYYKPGSMGKQYFLGFEKVLGGSGDPAYPGGPLFNFLGFGR-DEKSMKDLKVKE 231
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
+KNGRLAMLAV+G + Q I+TG GP NL+ HL+DP + V
Sbjct: 232 VKNGRLAMLAVLGYFIQAIFTGVGPFQNLLDHLSDPANNNVL 273
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 118/208 (56%), Gaps = 17/208 (8%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
R W PG PP +LDG+LPGDFGFDPLGL E+VHCR+AM G AGI
Sbjct: 61 QRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILF 120
Query: 109 PELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+LL G + P W+ AG ++ F +TT LF V++ +G+AE +R+ D PG +
Sbjct: 121 TDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFKNPGSQAEEG 180
Query: 168 IFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
F L G GYPGG F+PLG E + + KEIKNGRLAM+A++G Q
Sbjct: 181 TFIGLEAALAGQQPGYPGGPLFNPLGLAK-DIENAHDEKLKEIKNGRLAMVAMLGFMVQA 239
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
T GPIDNL+ HL+DP + + F+
Sbjct: 240 SVTHAGPIDNLLTHLSDPFNKNIIHTFS 267
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 124/219 (56%), Gaps = 19/219 (8%)
Query: 47 AGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EI 93
+ TR V A RP W PG PP +LDG+L GDFGFDPLGL E+
Sbjct: 43 SSTRCTPVVVHAQ--QRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAEL 100
Query: 94 VHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGR 152
VH R+AM G AGI +LL GI P WY AG +++ F T TL +V+++ +G+AE +
Sbjct: 101 VHARFAMAGVAGILFTDLLRVTGIRKLPVWYEAGAVKFEFASTRTLIVVQLLLMGFAETK 160
Query: 153 RWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
R+ D + PG + F + L G + GYPGG +PLG E + KEIKN
Sbjct: 161 RYMDFVSPGSQAKEGSFFGLESALEGLEPGYPGGPLLNPLGLAR-DIENAHVWKLKEIKN 219
Query: 211 GRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
GRLAM+A++G + Q T GPIDNLI HL++P H T+
Sbjct: 220 GRLAMVAMVGIFVQAAVTHAGPIDNLIEHLSNPWHRTII 258
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 125/223 (56%), Gaps = 24/223 (10%)
Query: 41 RKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
R + RS V AA+ RPLW PG TPP LDG+LPGDFGFDPL L
Sbjct: 14 RTSSRVQARRSAVVVYAAS---RPLWQPGVTPPAHLDGTLPGDFGFDPLNLGVNKEALDW 70
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG----ELEYFTDTTTLFIVEM 143
E+ + RWAMLG AGI P LT++G+LN P W AG E E +L +V+
Sbjct: 71 YRNAELQNGRWAMLGVAGIIFPAELTRVGLLNVPDWADAGKVYAESENAIPFASLLMVQF 130
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFP--NNKLTGTDV-GYPGGLWFDPLGWGSGSPEKV 200
+ E +RW DI KPG F + G+ V GYPGG F+PLG G+ S E +
Sbjct: 131 FLFNFVEIKRWEDIKKPGSQAEAGSFLGFESAFKGSGVSGYPGGP-FNPLGLGNSSKESM 189
Query: 201 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
+ + +EI+NGRLAM+A +G QH TG GP+DNL HLADP
Sbjct: 190 DDFKWREIRNGRLAMMAFLGFLAQHAATGKGPLDNLADHLADP 232
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 135/242 (55%), Gaps = 35/242 (14%)
Query: 45 ATAGTRSVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
A+ S V AAA P NRPLWF S +LDGSLPGD+GFDPLGL
Sbjct: 30 ASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGG 89
Query: 92 ----------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYF 132
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+
Sbjct: 90 FIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYW 149
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPL 190
D TLF++EM +G+AE RR D PG + K L G+ + YPGG +F+PL
Sbjct: 150 ADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPL 209
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
G+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + V
Sbjct: 210 GFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLT 268
Query: 251 AF 252
+
Sbjct: 269 SL 270
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 127/233 (54%), Gaps = 30/233 (12%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------------- 91
R+ S NR LWF +LDGSLPGDFGFDPLGL
Sbjct: 39 VRAASTPPVKQGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAY 98
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDTTTLFIV 141
E+++ R+AMLGAAG PE+L K G++ +W+ AG Y+ D TLF++
Sbjct: 99 GEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVL 158
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEK 199
EM +G+AE RR+ D KPG + K G D YPGG F+PLG+G +
Sbjct: 159 EMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK-DEKS 217
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+KEL+ KEIKNGRLAMLA++G + Q + TG GP NL+ HLADP + V +
Sbjct: 218 MKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 141/258 (54%), Gaps = 37/258 (14%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVS--VSAAAADP-----NRPLWFPGSTPPEWLDGSLPGD 83
LGG+ ++ + + + +R S V AA+ P +R LWF +LDGSLPGD
Sbjct: 16 QLLGGRPVQWTPSRSFSSSRKASFVVKAASTPPVKQGADRQLWFASKQSLSYLDGSLPGD 75
Query: 84 FGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS--- 122
FGFDPLGL EI++ R+AMLG AG PE+L KLG++ +
Sbjct: 76 FGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETALP 135
Query: 123 WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 176
W+ AG Y+ D TLF++EM +G+AE RR+ D KPG + K G
Sbjct: 136 WFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLG 195
Query: 177 T--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
D YPGG F+PLG+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP
Sbjct: 196 GSGDPAYPGGPIFNPLGFGKDE-KSMKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPFQ 254
Query: 235 NLIAHLADPGHATVFAAF 252
NL+ HLADP + V +
Sbjct: 255 NLLDHLADPVNNNVLTSL 272
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 91/125 (72%), Gaps = 13/125 (10%)
Query: 26 GATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFG 85
GA KASFL G+ + LR++ A R+ + + A RPLWFPG+TPP WLDGSLP DFG
Sbjct: 36 GAAKASFLVGRAVSLRQSKAAMPRRAAVIVSEAVQTERPLWFPGTTPPPWLDGSLPADFG 95
Query: 86 FDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF 132
FDPLGL E+VHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE EYF
Sbjct: 96 FDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYF 155
Query: 133 TDTTT 137
TD TT
Sbjct: 156 TDKTT 160
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 139/258 (53%), Gaps = 37/258 (14%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVS--VSAAAADP-----NRPLWFPGSTPPEWLDGSLPGD 83
LGG+ ++ + + +R S V AA+ P +R LWF +LDGSLPGD
Sbjct: 16 QLLGGRPVQWTPTRSFSSSRKASFVVKAASTPPVKQGADRQLWFASKQSLSYLDGSLPGD 75
Query: 84 FGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS--- 122
FGFDPLGL EI++ R+AMLG AG PE+L KLG++ +
Sbjct: 76 FGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETALP 135
Query: 123 WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 176
W+ AG Y+ D TLF++EM +G+AE RR+ D KPG + K G
Sbjct: 136 WFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGFEKFLG 195
Query: 177 T--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
D YPGG F+PLG+G +KEL+ KE+KNGRLAMLA++G + Q + TG GP
Sbjct: 196 GSGDPAYPGGPIFNPLGFGKDE-RSMKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPFQ 254
Query: 235 NLIAHLADPGHATVFAAF 252
NL+ HLADP + V +
Sbjct: 255 NLLDHLADPVNNNVLTSL 272
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 134/242 (55%), Gaps = 35/242 (14%)
Query: 45 ATAGTRSVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
A+ S V AAA P NRPLWF S +LDGSLPGD+GFDPLGL
Sbjct: 30 ASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGG 89
Query: 92 ----------EIVHCRWAMLGAAGIFIPELLTKLGIL----NTPSWYT-----AGELEYF 132
EI++ R+AMLGAAG PE+L K G++ P T AG Y+
Sbjct: 90 FIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPXXQTGVIPPAGTYTYW 149
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPL 190
D TLF++EM +G+AE RR D PG + K L G+ + YPGG +F+PL
Sbjct: 150 ADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPL 209
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
G+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + V
Sbjct: 210 GFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLT 268
Query: 251 AF 252
+
Sbjct: 269 SL 270
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 135/242 (55%), Gaps = 35/242 (14%)
Query: 45 ATAGTRSVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
A+ S V AAAA P NRPLW S +LDGSLPGD+GFDPLGL
Sbjct: 30 ASQKKSSFVVKAAAAPPVKQGANRPLWVASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGG 89
Query: 92 ----------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYF 132
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+
Sbjct: 90 FIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYW 149
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPL 190
D TLF++EM +G+AE RR D PG + K L G+ + YPGG +F+PL
Sbjct: 150 ADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPL 209
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
G+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + V
Sbjct: 210 GFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLT 268
Query: 251 AF 252
+
Sbjct: 269 SL 270
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 131/236 (55%), Gaps = 35/236 (14%)
Query: 51 SVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------- 91
S V AAA P +RPLWF +LDGSLPGD+GFDPLGL
Sbjct: 39 SFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKW 98
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTL 138
EI++ R+AMLGA G PE+L K G++ + W+ AG Y+ D+ TL
Sbjct: 99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTL 158
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGS 196
F+ EM +G+AE RR+ D KPG + K G + YPGG +F+PLG+G
Sbjct: 159 FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGK-D 217
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +K+L+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP H + +
Sbjct: 218 EKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 120/208 (57%), Gaps = 17/208 (8%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
RP W PG PP +L+G+L GDFGFDPLGL E+VH R+AM G AGI +
Sbjct: 55 QRPTWLPGLDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILV 114
Query: 109 PELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+LL GI N P WY AG +++ F T LFIV++I +G+ E +R+ D PG +
Sbjct: 115 TDLLRVTGISNLPVWYEAGAVKFEFASTEALFIVQLILMGFVETKRYMDFTNPGSQAKEG 174
Query: 168 IF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
F L G + GYPGG +PLG + + + KEIKNGRLAM+A++G + Q
Sbjct: 175 SFFGLEAALEGLEPGYPGGPLLNPLGLAR-DIKNAHDWKLKEIKNGRLAMVAMLGVFVQA 233
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAFT 253
T GPI+NL+ HL++P H T+ +
Sbjct: 234 SVTHAGPIENLVEHLSNPWHKTIIQTIS 261
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 126/233 (54%), Gaps = 30/233 (12%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------------- 91
R+ S NR LWF +LDG LPGDFGFDPLGL
Sbjct: 39 VRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAY 98
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDTTTLFIV 141
E+++ R+AMLGAAG PE+L K G++ +W+ AG Y+ D TLF++
Sbjct: 99 GEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVL 158
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEK 199
EM +G+AE RR+ D KPG + K G D YPGG F+PLG+G +
Sbjct: 159 EMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK-DEKS 217
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+KEL+ KEIKNGRLAMLA++G + Q + TG GP NL+ HLADP + V +
Sbjct: 218 MKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 131/236 (55%), Gaps = 35/236 (14%)
Query: 51 SVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------- 91
S V AAA P +RPLWF +LDGSLPGD+GFDPLGL
Sbjct: 39 SFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKW 98
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTL 138
EI++ R+AMLGA G PE+L K G++ + W+ AG Y+ D+ TL
Sbjct: 99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTL 158
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGS 196
F+ EM +G+AE RR+ D KPG + K G + YPGG +F+PLG+G
Sbjct: 159 FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGK-D 217
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +K+L+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP H + +
Sbjct: 218 EKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 131/238 (55%), Gaps = 36/238 (15%)
Query: 51 SVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
S V AA++ P NR LWF +LDGSLPGDFGFDPLGL
Sbjct: 39 SFVVKAASSPPVKQNGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPR 98
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTT 137
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+ D T
Sbjct: 99 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYT 158
Query: 138 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSG 195
LF++EM F+G+AE RR+ D PG + K G + YPGG F+PLG+G
Sbjct: 159 LFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGK- 217
Query: 196 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + + +
Sbjct: 218 DEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLN 275
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 139/267 (52%), Gaps = 33/267 (12%)
Query: 17 SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD--PNRPLWFPGSTPPE 74
SS A A + SF G + L + G+ V +A NR LWF
Sbjct: 306 SSSSLTFAAEAVRQSF-GARSLPSSIGSSRKGSFVVKAAAPVKKGGANRQLWFASKQSLS 364
Query: 75 WLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLG 116
+LDGSLPGDFGFDPLGL EI++ R+AMLGAAG PE+L K G
Sbjct: 365 YLDGSLPGDFGFDPLGLSDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGKAG 424
Query: 117 ILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
++ + W+ AG Y+ D TLF++EM F+G+AE RR D PG +
Sbjct: 425 LIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQY 484
Query: 168 IFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
K G + YPGG F+PLG+G + +KEL+ KE+KNGRLAMLA++G + Q
Sbjct: 485 FLGLEKGLGGSGEPAYPGGPIFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQA 543
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAF 252
+ TG GP NL+ HLADP + + +
Sbjct: 544 LVTGVGPYQNLLDHLADPVNNNILTSL 570
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 36/237 (15%)
Query: 51 SVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
S V AA++ P NR LWF +LDGSLPGDFGFDPLGL
Sbjct: 39 SFVVKAASSPPVKQNGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPR 98
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTT 137
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+ D T
Sbjct: 99 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYT 158
Query: 138 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSG 195
LF++EM F+G+AE RR+ D PG + K G + YPGG F+PLG+G
Sbjct: 159 LFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGK- 217
Query: 196 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + + +
Sbjct: 218 DEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 134/242 (55%), Gaps = 35/242 (14%)
Query: 45 ATAGTRSVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
A+ S V A A P NRPLWF S +LDGSLPGD+GFDPLGL
Sbjct: 30 ASQKKSSFVVKATATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGG 89
Query: 92 ----------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYF 132
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+
Sbjct: 90 FIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPPETALPWFQTGVIPPAGTYTYW 149
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPL 190
D TLF++EM +G+AE RR D PG + K L G+ + YPGG +F+PL
Sbjct: 150 ADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPL 209
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
G+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + V
Sbjct: 210 GFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLT 268
Query: 251 AF 252
+
Sbjct: 269 SL 270
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 131/237 (55%), Gaps = 36/237 (15%)
Query: 51 SVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
S V AA++ P NR LWF +LDGSLPGDFGFDPLGL
Sbjct: 39 SFVVKAASSPPVKQNGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPR 98
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTT 137
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+ D T
Sbjct: 99 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYT 158
Query: 138 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSG 195
LF++EM F+G+AE RR+ D PG + K G + YPGG F+PLG+G
Sbjct: 159 LFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGK- 217
Query: 196 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + + +
Sbjct: 218 DEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 129/239 (53%), Gaps = 36/239 (15%)
Query: 49 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------- 91
+R S AA P NR LWF +LDGSLPGDFGFDPLGL
Sbjct: 317 SRKGSFVVKAAAPVKKGGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGVGGFIE 376
Query: 92 -------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDT 135
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+ D
Sbjct: 377 PEWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADN 436
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWG 193
TLF++EM F+G+AE RR D PG + K G + YPGG F+PLG+G
Sbjct: 437 YTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFG 496
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + + +
Sbjct: 497 K-DEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 554
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 137/243 (56%), Gaps = 36/243 (14%)
Query: 45 ATAGTRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------- 91
+T+ +S V A + P NRPLWF S +LDGSLPGD+GFDPLGL
Sbjct: 29 STSRRKSSFVVKATSTPPVKQGANRPLWFASSQSLTYLDGSLPGDYGFDPLGLSDPEGTG 88
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEY 131
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y
Sbjct: 89 GFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYSY 148
Query: 132 FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDP 189
+ D TLF++EM +G+AE RR D PG + K +G+ + YPGG +F+P
Sbjct: 149 WADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFSGSGEPAYPGGPFFNP 208
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
LG+G + + +KEL+ KEIKNGRLAMLA++G + Q + TG GP NL+ HLADP + V
Sbjct: 209 LGFGK-NEKSMKELKLKEIKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 267
Query: 250 AAF 252
+
Sbjct: 268 TSL 270
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 149/281 (53%), Gaps = 43/281 (15%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKL--RKNGATAGTRS---VSVS 55
MA + A A+ SPS + + LGGK L L N ++ +R+ V
Sbjct: 1 MAGITAK----ALISPSLSATGGDVARRQQLLLGGKALILPPYFNQSSESSRTSFAVRSQ 56
Query: 56 AAAADP----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EI 93
A++ P +R LWF +LDGSLPGD+GFDPLGL EI
Sbjct: 57 ASSGKPVKQGDRQLWFASKQSLSYLDGSLPGDYGFDPLGLMDPEGPGGFIEPGWLAYGEI 116
Query: 94 VHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVEMI 144
++ R+AMLGA G PE+L KLG++ + W+ AG +Y+ D TLF++EM
Sbjct: 117 INGRYAMLGAVGAIAPEILGKLGLIPQETALPWFRTGVIPPAGTYDYWADPFTLFVLEMA 176
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKE 202
+G+AE RR D PG ++ K G + YPGG F+PLG+G + +KE
Sbjct: 177 LMGFAEHRRLQDYRYPGSMSKQYFLGFEKYLGGSGNPSYPGGPLFNPLGFGK-DEKSMKE 235
Query: 203 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
L+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP
Sbjct: 236 LKLKEVKNGRLAMLAIVGYFIQGLVTGVGPFQNLLDHLADP 276
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 134/242 (55%), Gaps = 35/242 (14%)
Query: 45 ATAGTRSVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
A+ S V AAA P NRPLWF S +LDGSLPGD+GFDPLGL
Sbjct: 30 ASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGG 89
Query: 92 ----------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYF 132
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+
Sbjct: 90 FIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYW 149
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPL 190
D TLF++EM +G+AE RR D PG + K L G+ + YPGG +F+PL
Sbjct: 150 ADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPL 209
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
G+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLA P + V
Sbjct: 210 GFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLAGPVNNNVLT 268
Query: 251 AF 252
+
Sbjct: 269 SL 270
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 127/233 (54%), Gaps = 29/233 (12%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------------- 91
R+ S A + NR LWF +LDG+LPGDFGFDPLGL
Sbjct: 34 VRASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAY 93
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIV 141
EI + R AM+G G+ PE L K+G++ + W+ AG + +Y+ D TLF+
Sbjct: 94 GEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVF 153
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEK 199
EM IG+AE RR D PG + K G D YPGG F+PLG+G+ S ++
Sbjct: 154 EMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKE 213
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+KEL+ KEIKNGRLAMLA +G Q I+TG GP NL+ HL+DP + + +
Sbjct: 214 MKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 266
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 130/236 (55%), Gaps = 35/236 (14%)
Query: 51 SVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------- 91
S V AAA P +RPLWF +LDGSLPGD+GFDPLGL
Sbjct: 39 SFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKW 98
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTL 138
EI++ R+AMLGA G PE+L K G++ + W+ AG Y+ D+ TL
Sbjct: 99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTL 158
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGS 196
F+ EM +G+AE RR+ D KPG + K G + YPGG +F+PLG+G
Sbjct: 159 FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGK-D 217
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +K+L+ KE+KNGRLAMLA++G + Q + TG GP NL+ HL DP H + +
Sbjct: 218 EKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 130/236 (55%), Gaps = 35/236 (14%)
Query: 51 SVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------- 91
S V AAA P +RPLWF +LDGSLPGD+GFDPLGL
Sbjct: 39 SFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKW 98
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTL 138
EI++ R+AMLGA G PE+L K G++ + W+ AG Y+ D+ TL
Sbjct: 99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTL 158
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGS 196
F+ EM +G+AE RR+ D KPG + K G + YPGG +F+PLG+G
Sbjct: 159 FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGK-D 217
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +K+L+ KE+KNGRLAMLA++G + Q + TG GP NL+ HL DP H + +
Sbjct: 218 EKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 121/211 (57%), Gaps = 24/211 (11%)
Query: 45 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
A R+V AA RP+WFPG+ PP LDGSL GD+GFDPL L
Sbjct: 16 ARQAPRAVRAQAAV----RPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQA 71
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL---EYFTDTTTLFIVEMIFIGW 148
E+VH R+AMLGAAGI + + K+G L P WY AG++ + D TL +++ +GW
Sbjct: 72 ELVHGRFAMLGAAGIILTSIGAKVG-LGFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGW 130
Query: 149 AEGRRWADIIKPGCVNTDPIFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
AE +RW D PG D F + G + GYPGG +FDP+G G K +E + K
Sbjct: 131 AETKRWYDFKNPGS-QADGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQK 189
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
E+KNGRLAM+A +G Q+ TG GP+DNL+
Sbjct: 190 EVKNGRLAMIACLGFAAQYAATGKGPLDNLV 220
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 131/236 (55%), Gaps = 35/236 (14%)
Query: 51 SVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------- 91
S V AAA P +RPLWF +LDGSLPGD+GFDPLGL
Sbjct: 39 SFLVKAAAIPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKW 98
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTL 138
EI++ R+AMLGA G PE+L K G++ + W+ AG Y+ D+ TL
Sbjct: 99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTL 158
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGS 196
F+ EM +G+AE RR+ D KPG + K G + YPGG +F+PLG+G
Sbjct: 159 FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGK-D 217
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +K+L+ KE+KNGRLAMLA++G + + + TG GP NL+ HLADP H + +
Sbjct: 218 EKSLKDLKLKEVKNGRLAMLAILGYFVRALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 123/230 (53%), Gaps = 36/230 (15%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ SS ++FLG R A+ RS+ A
Sbjct: 1 MASVTARAPVAALRPSSS-----------SAFLGHSSRLGRTATASPTRRSLKAEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +LDGSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LTK G++N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 104 IPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
IF + L + GYPG + F+PL + E + KE+ NG L +A
Sbjct: 164 IFKSYSLPPHECGYPGSV-FNPLNFA-----PTLEAKEKELANGELHCIA 207
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 122/218 (55%), Gaps = 28/218 (12%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHC 96
R V+V A + W PG P +LDGSL GD GFDPL L ++V+
Sbjct: 26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNG 79
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPSWYT-AGELEYFTDTTTLFIVEMIFIGWAEGRRWA 155
RWAMLG AG+ IPE+LTK G++N P W G+ YF ++T V M + E RRW
Sbjct: 80 RWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQ 138
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
DI PG VN DPIF + L + GYPG + F+PL + +P + KE KE+ NGRLAM
Sbjct: 139 DIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPLNF---APLENKE---KELANGRLAM 191
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
LA +G QH G GP +NL HLADP H T+ +
Sbjct: 192 LAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTIS 229
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 140/267 (52%), Gaps = 48/267 (17%)
Query: 21 SRSVAGA--TKASFLGGKKLKLRKNGATAGTRSVSVSAAAADP----NRPLWFPGSTPPE 74
+R V GA T++ F+ +K S V AA+ P NR LWF
Sbjct: 18 ARKVLGARPTQSPFVSSRK------------SSFVVRAASTPPVKQGNRQLWFASKQSLS 65
Query: 75 WLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLG 116
+LDGSLPGDFGFDPLGL EI++ R+AMLGA G PE+L K G
Sbjct: 66 YLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 125
Query: 117 ILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
++ + W+ AG Y+ D TLF+ EM +G+AE RR+ D KPG +
Sbjct: 126 LIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQY 185
Query: 168 IFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
K G + YPGG F+PLG+G + +K+L+ KE+KNGRLAMLA++G + Q
Sbjct: 186 FLGFEKYLGGSGEPAYPGGPLFNPLGFGKDE-KSLKDLKLKEVKNGRLAMLAILGYFVQG 244
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAF 252
+ TG GP NL+ HLADP H + +
Sbjct: 245 LVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 127/233 (54%), Gaps = 29/233 (12%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------------- 91
R+ S A + NR LWF +LDG+LPGDFGF+PLGL
Sbjct: 34 VRASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFGFNPLGLSDPEGTGGFIEPRWLAY 93
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIV 141
EI + R AM+G G+ PE L K+G++ + W+ AG + +Y+ D TLF+
Sbjct: 94 GEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVF 153
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEK 199
EM IG+AE RR D PG + K G D YPGG F+PLG+G+ S ++
Sbjct: 154 EMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKE 213
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+KEL+ KEIKNGRLAMLA +G Q I+TG GP NL+ HL+DP + + +
Sbjct: 214 MKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 266
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 132/239 (55%), Gaps = 36/239 (15%)
Query: 49 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------- 91
+R V AAA P +RPLWF +LDGSLPGD+GFDPLGL
Sbjct: 35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIE 94
Query: 92 -------EIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDT 135
E+++ R+AMLGA G PE L K+G++ +W+ AG Y+ D
Sbjct: 95 PRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADN 154
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWG 193
TLF++EM +G+AE RR+ D KPG + K G + YPGG +F+PLG+G
Sbjct: 155 YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG 214
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ H+ADP + V +
Sbjct: 215 K-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 127/233 (54%), Gaps = 30/233 (12%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------------- 91
R+ S +R LWF +LDGSLPGDFGFDPLGL
Sbjct: 39 VRASSTPPVKQGADRQLWFASKQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAY 98
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIV 141
EI++ R+AMLGAAG PE+L K G++ + W+ AG +Y+ D TLF+
Sbjct: 99 GEIINGRFAMLGAAGAIAPEILGKAGLIPPETALPWFQTGVIPPAGTYDYWADPYTLFVF 158
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEK 199
EM +G+AE RR+ D KPG + K G D YPGG F+PLG+G +
Sbjct: 159 EMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGK-DEKS 217
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP + V +
Sbjct: 218 MKELKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 145/272 (53%), Gaps = 45/272 (16%)
Query: 18 SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVS--VSAAAADP-----NRPLWFPGS 70
S S + + LGG+ + ++ +R VS V A A P +R LWF
Sbjct: 8 SSSSITASAEAARQILGGRSFQ------SSSSRKVSFAVRAEATPPAKQGADRQLWFASK 61
Query: 71 TPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELL 112
+LDGSLPGD+GFDPLGL EI++ R+AMLGA G PE+L
Sbjct: 62 QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPSWLAYGEIINGRYAMLGAVGAIAPEIL 121
Query: 113 TKLGILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
K G++ + W+ AG +Y+ D TLF+ E+ +G+AE RR+ D KPGC+
Sbjct: 122 GKAGLIPPETALPWFKTGVIPPAGTYDYWADPYTLFVFELALMGFAEHRRFQDFQKPGCL 181
Query: 164 NTDPIFPNNKL---TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
+ K +G + YPGG F+PLG+G + +K+L+ KE+KNGRLAMLA++G
Sbjct: 182 SKQYFLGFEKYFEGSGNPI-YPGGPLFNPLGFGKDE-KSLKDLKLKEVKNGRLAMLAILG 239
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ Q + TG GP NL+ HL+DP + + +
Sbjct: 240 YFVQALVTGVGPYQNLLDHLSDPVNNNILTSL 271
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 102/157 (64%), Gaps = 7/157 (4%)
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEG 151
E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF ++TLF++E I + E
Sbjct: 15 ELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEI 74
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
RRW DI PG VN DPIF L +VGYPGG+ F+PL + E + KEI NG
Sbjct: 75 RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP-----TLEAKEKEIANG 128
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
RL MLA +G QH TG GP DNL+ H++DP H T+
Sbjct: 129 RL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 164
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 139/267 (52%), Gaps = 48/267 (17%)
Query: 21 SRSVAGA--TKASFLGGKKLKLRKNGATAGTRSVSVSAAAADP----NRPLWFPGSTPPE 74
+R V GA T++ F+ +K S V AA+ P NR LWF
Sbjct: 18 ARKVLGARPTQSPFVSSRK------------SSFVVRAASTPPVKQGNRQLWFASKQSLS 65
Query: 75 WLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLG 116
+LDGSLPGDFGFDPLGL EI++ R+AMLGA G PE+L K G
Sbjct: 66 YLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 125
Query: 117 ILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
++ + W+ AG Y+ D TLF+ EM +G+AE RR D KPG +
Sbjct: 126 LIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAEHRRLQDWAKPGSMGKQY 185
Query: 168 IFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
K G + YPGG F+PLG+G + +K+L+ KE+KNGRLAMLA++G + Q
Sbjct: 186 FLGFEKYLGGSGEPAYPGGPLFNPLGFGKDE-KSLKDLKLKEVKNGRLAMLAILGYFVQG 244
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAF 252
+ TG GP NL+ HLADP H + +
Sbjct: 245 LVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 131/243 (53%), Gaps = 35/243 (14%)
Query: 44 GATAGTRSVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------- 91
G++ + S V A A P +R LWF +LDGSLPGDFGFDPLGL
Sbjct: 29 GSSRKSASFVVRAEATPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTG 88
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEY 131
E+++ R+AMLGAAG PE+ LG++ + W+ AG Y
Sbjct: 89 GFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGLIPPETALPWFKTGVIPPAGTYNY 148
Query: 132 FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDP 189
+ D TLF+ EM +G+AE RR+ D KPG + K G D YPGG F+P
Sbjct: 149 WADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNP 208
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
LG+G + +KEL+ KEIKNGRLAMLA++G + Q + TG GP NL+ HL+DP + V
Sbjct: 209 LGFGK-DEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVL 267
Query: 250 AAF 252
+
Sbjct: 268 TSL 270
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 117/216 (54%), Gaps = 31/216 (14%)
Query: 1 MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
MASV A VAA+ SS ++FLG R A+ RS+ A
Sbjct: 1 MASVTARAPVAALRPSSS-----------SAFLGHSSRLGRTATASPTRRSLKAEAKGE- 48
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +LDGSLPGD GFDPLGL E+V+ RWAMLG AG+
Sbjct: 49 -----WLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGML 103
Query: 108 IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
IPE+LTK G++N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DP
Sbjct: 104 IPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 163
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
IF + L + GYPG + F+PL + K KEL
Sbjct: 164 IFKSYSLPPHECGYPGSV-FNPLNFAPTLEAKEKEL 198
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 126/229 (55%), Gaps = 29/229 (12%)
Query: 53 SVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIV 94
S S A +R LWF +LDG+LPGDFGFDPLGL EI
Sbjct: 37 SSSPPAKQGDRQLWFAXXZXLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIF 96
Query: 95 HCRWAMLGAAGIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIVEMIF 145
+ R AM+G G+ PE L K+G++ + + W+ AG + +Y+ D TLF+ EM
Sbjct: 97 NGRTAMMGVVGMIAPEALGKVGLVPSETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMAL 156
Query: 146 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKEL 203
IG+AE RR D PG + K G D YPGG F+PLG+G+ S +++KEL
Sbjct: 157 IGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKEL 216
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ KEIKNGRLAMLA +G Q I+TG GP NL+ HL+DP + + +
Sbjct: 217 KLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 265
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 128/233 (54%), Gaps = 29/233 (12%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------------- 91
R+ + A +R LWF +LDG+LPGDFGFDPLGL
Sbjct: 34 VRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAY 93
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIV 141
E+ + R AM+G G+ PELL KLG++ + W+ AG Y+ D TLF+
Sbjct: 94 GEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVF 153
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPEK 199
E+ +G+AE RR+ D PG + K L G+ + YPGG F+PLG+G+ S +
Sbjct: 154 ELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAE 213
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+KEL+ KEIKNGRLAMLA +G Q ++TG GP+ NL+ HLADP H + +
Sbjct: 214 MKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 266
>gi|11762172|gb|AAG40364.1|AF325012_1 AT3g47470 [Arabidopsis thaliana]
Length = 148
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 99/154 (64%), Gaps = 6/154 (3%)
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLG AG+ +PE+ TK+GI+N P WY AG+ +YF ++TLF++E I + E RRW DI
Sbjct: 1 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PG VN DPIF L +VGYPGG+ F+PL + +E + KE+ NGRLAMLA +
Sbjct: 61 PGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFAP-----TQEAKEKELANGRLAMLAFL 114
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G QH TG GP +NL+ HL+DP H T+ F
Sbjct: 115 GFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 148
>gi|304571350|dbj|BAJ15793.1| chlorophyll a-b binding protein, partial [Pieris nana]
Length = 79
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 76/79 (96%)
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKV ELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 1 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVMELRTKEIKNGRLAMLAVMGAWFQ 60
Query: 225 HIYTGTGPIDNLIAHLADP 243
IYTGTGPIDNL AHLADP
Sbjct: 61 AIYTGTGPIDNLFAHLADP 79
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 123/233 (52%), Gaps = 31/233 (13%)
Query: 32 FLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL 91
L + +R +G RSV A+ +RPLW PGSTPP L G LPGDFGFDPLGL
Sbjct: 3 LLAKNAVAVRPSGVA--RRSVVAKAS----SRPLWLPGSTPPAHLKGELPGDFGFDPLGL 56
Query: 92 -------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG-ELEYFTDTTT 137
E+VH RWAM AGI + E+ + WY+AG ++E
Sbjct: 57 GANPDSLKWFRESELVHSRWAMAAVAGILVQEI-----VRPDVFWYSAGSQVESPLGPLG 111
Query: 138 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 197
L E + W E RRW D+ KPG V+ DPIF KL + GYPGG+ F P P
Sbjct: 112 LLAFEFFCMHWVELRRWQDLRKPGSVDQDPIFSQYKLPPHEPGYPGGV-FAPF-----IP 165
Query: 198 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
+ EL+ KEIKNGRLAMLA +G TG GPI L HLADP T+F+
Sbjct: 166 GDLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPWGTTIFS 218
>gi|304571358|dbj|BAJ15797.1| chlorophyll a-b binding protein, partial [Pieris japonica]
Length = 79
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 76/79 (96%)
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKV ELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 1 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVLELRTKEIKNGRLAMLAVMGAWFQ 60
Query: 225 HIYTGTGPIDNLIAHLADP 243
IYTGTGPIDNL AHLADP
Sbjct: 61 AIYTGTGPIDNLFAHLADP 79
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 121/229 (52%), Gaps = 25/229 (10%)
Query: 40 LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDG----SLPGDFGFDPLGL---- 91
+ K A A +VS A R W PGS P+ LD ++ G+FGFDPLGL
Sbjct: 4 MMKRSAVAARPAVSRKAVVTCVARQSWLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDA 63
Query: 92 ---------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL---EYFTDTTTLF 139
E+VH R AM AGI IP LLTK G LN P WY AG++ F L
Sbjct: 64 EALRWYQQAELVHARTAMTAVAGILIPGLLTKAGALNVPEWYDAGKVAIESSFAPFGALL 123
Query: 140 IVEMIFIGWAEGRRWADIIKPGCVNTDPIFP--NNKLTGT-DVGYPGGLWFDPLGWGSGS 196
V++ G+ E +RW D KPG F GT D GYPGG+ FDPLG S
Sbjct: 124 AVQLFLTGFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGGI-FDPLGL-SKD 181
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
+K+ + + KEIKNGRLAM+A +G Q TG GPIDNL AHLADP H
Sbjct: 182 ADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADPWH 230
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 120/215 (55%), Gaps = 31/215 (14%)
Query: 58 AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWA 99
A NR LWF S +LDG+LPGD+GFDPLGL EI++ R+A
Sbjct: 54 ATKANRQLWFASSQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYA 113
Query: 100 MLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIGWAE 150
MLGAAG PE+ K+GI+ + W+ AG Y+ D TLF +EM +G+AE
Sbjct: 114 MLGAAGAIAPEIFGKIGIIPQETAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAE 173
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
RR D KPG + K G D YPGG+ F+P G+G + ++ L+ KE+
Sbjct: 174 HRRAQDFYKPGSMGKQYFLGFEKYLGGSGDPAYPGGI-FNPFGFGK-DEKSMRTLKIKEV 231
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAMLA++G + Q +TG GP NL+ HLADP
Sbjct: 232 KNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADP 266
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 120/215 (55%), Gaps = 31/215 (14%)
Query: 58 AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWA 99
A NR LWF S +LDG+LPGD+GFDPLGL EI++ R+A
Sbjct: 54 ATKANRQLWFASSQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYA 113
Query: 100 MLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIGWAE 150
MLGAAG PE+ K+GI+ + W+ AG Y+ D TLF +EM +G+AE
Sbjct: 114 MLGAAGAIAPEIFGKIGIIPQQTAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAE 173
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
RR D KPG + K G D YPGG+ F+P G+G + ++ L+ KE+
Sbjct: 174 HRRAQDYYKPGSMGKQYFLGFEKYLGGSGDPAYPGGI-FNPFGFGK-DEKSMRTLKIKEV 231
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAMLA++G + Q +TG GP NL+ HLADP
Sbjct: 232 KNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADP 266
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 126/233 (54%), Gaps = 30/233 (12%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------------- 91
R+ S +RPLWF +LDGSLPGD+GFDPLGL
Sbjct: 39 VRAASTPPVKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAY 98
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIV 141
E+++ R+AMLGA G PE+L KLG++ + W+ AG Y+ D TLF+
Sbjct: 99 GEVINGRYAMLGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVF 158
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEK 199
EM +G+AE RR+ D PG + K G D YPGG F+PLG+G +
Sbjct: 159 EMALMGFAEHRRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDE-KS 217
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+K+L+ KE+KNGRLAMLA++G + Q TG GP+ NL+ HLADP + + +
Sbjct: 218 LKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSL 270
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 124/225 (55%), Gaps = 29/225 (12%)
Query: 46 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD----GSLPGDFGFDPLGL---------- 91
+A +R V+ A R W PGS P LD +L G+FGFDPLGL
Sbjct: 8 SASSRKSVVTCVA----RQSWLPGSQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWY 63
Query: 92 ---EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL---EYFTDTTTLFIVEMIF 145
E++HCR AM G AGI IP LLTK G LN P WY AG++ F TL V++
Sbjct: 64 QQAELIHCRTAMTGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGTLLAVQLFL 123
Query: 146 IGWAEGRRWADIIKPGCVNTDPIFP--NNKLTGT-DVGYPGGLWFDPLGWGSGSPEKVKE 202
G+ E +RW DI KPG F + L GT +VGYPGG FDPLG S +K +
Sbjct: 124 CGFVEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGP-FDPLGL-SKEADKWAD 181
Query: 203 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
+ KE+KNGRLAMLA +G Q TG GP+DNL+AHL DP H
Sbjct: 182 WKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLVAHLKDPWHVN 226
>gi|304571344|dbj|BAJ15790.1| chlorophyll a-b binding protein, partial [Pieris nana]
gi|304571346|dbj|BAJ15791.1| chlorophyll a-b binding protein, partial [Pieris nana]
gi|304571348|dbj|BAJ15792.1| chlorophyll a-b binding protein, partial [Pieris nana]
gi|304571352|dbj|BAJ15794.1| chlorophyll a-b binding protein, partial [Pieris nana]
gi|304571354|dbj|BAJ15795.1| chlorophyll a-b binding protein, partial [Pieris nana]
gi|304571356|dbj|BAJ15796.1| chlorophyll a-b binding protein, partial [Pieris nana]
Length = 79
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 76/79 (96%)
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKV ELRTKEIKNGRLAMLAV+GAWFQ
Sbjct: 1 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVMELRTKEIKNGRLAMLAVVGAWFQ 60
Query: 225 HIYTGTGPIDNLIAHLADP 243
IYTGTGPIDNL AHLADP
Sbjct: 61 AIYTGTGPIDNLFAHLADP 79
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 129/237 (54%), Gaps = 34/237 (14%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLG 90
+FL G+K+ + A + VSAAA+ R LW PG P +L+G L GD+G+DPLG
Sbjct: 13 AFLTGRKVVSKARAGPAPRSTFQVSAAASQ-GRRLWAPGVEAPSYLNGELAGDYGWDPLG 71
Query: 91 L-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF----- 132
L E+VH RWAML AGI E++ K G+ +Y AG E
Sbjct: 72 LGAKPEALKWYRQAELVHARWAMLAVAGILAQEIV-KPGVF----FYNAGLPENLPGINF 126
Query: 133 ------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
+ L E + W E RRW DI K VN DPIF NK+ ++GYPGG+
Sbjct: 127 GGPEGKVNLGGLLAWEFLLFHWVEVRRWQDIKKKDSVNQDPIFKGNKVPNPELGYPGGI- 185
Query: 187 FDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
FDP G+ G+ KE++TKEIKNGRLAM+A +G Q TG GP+ NL AHLA+P
Sbjct: 186 FDPFGFSKGN---FKEVQTKEIKNGRLAMVAFVGFIIQAQATGQGPLANLGAHLANP 239
>gi|212275904|ref|NP_001130948.1| uncharacterized protein LOC100192053 [Zea mays]
gi|194690532|gb|ACF79350.1| unknown [Zea mays]
Length = 92
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 80/90 (88%)
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLGAAGIFIPE LTK+G+LNTP WYTAGE +YFTDTTTLFI+E+I IGWAEGRRWADIIK
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQYFTDTTTLFIIELILIGWAEGRRWADIIK 60
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
PG VNTDPIFP+NKLTGTDVGY L DP
Sbjct: 61 PGSVNTDPIFPSNKLTGTDVGYSSFLLHDP 90
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 127/233 (54%), Gaps = 30/233 (12%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----------------- 91
R+ S A +R LWF +LDG+LPGD+GFDPLGL
Sbjct: 33 VRASSSPPAKQGADRQLWFASKQSLSYLDGTLPGDYGFDPLGLSDPEGTGGFIEPKWLAY 92
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIV 141
E+++ R+AMLGA G PE+ K+GI+ + W+ AG Y+ D+ TLF+
Sbjct: 93 GEVINGRYAMLGAVGAIAPEIFGKMGIIPPETALPWFKTGVIPPAGTYNYWADSYTLFVF 152
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPEK 199
M +G+AE RR D PG + K L G+ D YPGG F+PLG+G + ++
Sbjct: 153 NMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGK-TEKE 211
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ EL+ KEIKNGRLAMLA++G + Q + TG GP NL+ HLADP + V +
Sbjct: 212 MNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 264
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 128/236 (54%), Gaps = 32/236 (13%)
Query: 38 LKLRKNGA---TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLD----GSLPGDFGFDPLG 90
L ++++G +A +R V+ A R W PGS P LD +L G+FGFDPLG
Sbjct: 3 LTMKRSGVAARSASSRKSVVTCVA----RQSWLPGSQIPAHLDTPAAQALAGNFGFDPLG 58
Query: 91 L-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL---EYFTD 134
L E++HCR AM G AGI IP LLTK G LN P WY AG++ F
Sbjct: 59 LGKDPVALRWYQQAELIHCRTAMAGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAP 118
Query: 135 TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP--NNKLTGT-DVGYPGGLWFDPLG 191
+L V++ G+ E +RW DI KPG F L GT ++GYPGG FDPLG
Sbjct: 119 WGSLLAVQLFLCGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGP-FDPLG 177
Query: 192 WGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
S +K + + KE+KNGRLAMLA +G Q TG GP+DNL AHL DP H
Sbjct: 178 L-SKEADKWADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVN 232
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 144/279 (51%), Gaps = 35/279 (12%)
Query: 3 SVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPN 62
S A+ A+A++S P+ + K FLG + + A+ + V V A +D
Sbjct: 21 STMATAALASVSVPAVVCGKPAFAEKK--FLGARVAAAARPQASKAAKFV-VKAEKSD-- 75
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAA 104
R L+F +LDGS PGDFG+DPLGL E++HCR+AMLG A
Sbjct: 76 RQLFFSDKAAQSYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYSEVIHCRYAMLGMA 135
Query: 105 GIFIPELLTKLGILNTPS---WY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWA 155
G+ PE+L KLG++ + W+ + G+ +Y+ LF +E++ + +AE RRW
Sbjct: 136 GMVAPEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQFAELRRWQ 195
Query: 156 DIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 213
D PG + + G D YPGG F+ LG+G + + +L+ KE+KNGRL
Sbjct: 196 DYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGK-DEKSMNDLKLKELKNGRL 254
Query: 214 AMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
AM+A +G + Q + TG GP NL HLADP + + F
Sbjct: 255 AMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 293
>gi|194701622|gb|ACF84895.1| unknown [Zea mays]
Length = 149
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 96/154 (62%), Gaps = 6/154 (3%)
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLG AG+ IPE+LTK G++N P WY AG+ EYF ++TLF++E I + E RRW DI
Sbjct: 1 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PG VN DPIF + L + GYPG + F+PL + E + KE+ NGRLAMLA +
Sbjct: 61 PGSVNQDPIFKSYSLPPHECGYPGSV-FNPLNFAP-----TLEAKEKELANGRLAMLAFL 114
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
QH TG GP DNL+ HL+DP H T+ +
Sbjct: 115 AFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 148
>gi|255642841|gb|ACU22606.1| unknown [Glycine max]
Length = 150
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 95/149 (63%), Gaps = 6/149 (4%)
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLG AG+ +PE+ TK+GI+N P WY AG+ EYF ++TLF++E I + E RRW DI
Sbjct: 1 MLGVAGMLLPEVFTKIGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKN 60
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PG VN DPIF L + GYPG + F+PL + E + KE+ NGRLAMLA +
Sbjct: 61 PGSVNQDPIFKQYSLPQHECGYPGSV-FNPLNFAP-----TLEAKEKELANGRLAMLAFL 114
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATV 248
G QH TG GP +NL+ HL+DP H T+
Sbjct: 115 GFIVQHNVTGKGPFENLLQHLSDPWHNTI 143
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 122/216 (56%), Gaps = 30/216 (13%)
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAA 104
R L F +LDG+LPGD+GFDPLGL EI++ R+AMLGAA
Sbjct: 4 RSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAA 63
Query: 105 GIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAEGRRWA 155
G PE+L ++G++ + W+ +G + Y+ D TLF++EM +G+AE RR
Sbjct: 64 GAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQ 123
Query: 156 DIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 213
D KPG + K G + YPGG F+ LG+G E ++EL+ KE+KNGRL
Sbjct: 124 DYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKE-LQELKVKEVKNGRL 182
Query: 214 AMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
AM+AV+G + Q I+TG GP NL+ HLADP H V
Sbjct: 183 AMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVL 218
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 30/217 (13%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGA 103
R L F +LDG+LPGD+GFDPLGL EI++ R+AMLGA
Sbjct: 3 QRNLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGA 62
Query: 104 AGIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAEGRRW 154
AG PE+L ++G++ + W+ +G + Y+ D TLF++EM +G+AE RR
Sbjct: 63 AGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRA 122
Query: 155 ADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
D KPG + K G + YPGG F+ LG+G E ++EL+ KE+KNGR
Sbjct: 123 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKE-LQELKVKEVKNGR 181
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
LAM+AV+G + Q I+TG GP NL+ HLADP H V
Sbjct: 182 LAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVL 218
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 143/276 (51%), Gaps = 35/276 (12%)
Query: 6 ASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPL 65
A+ A+A++S P+ + K FLG + + A+ + V V A +D R L
Sbjct: 2 ATAALASVSVPAVVCGKPAFAEKK--FLGARVAAAARPQASKAAKFV-VKAEKSD--RQL 56
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIF 107
+F +LDGS PGDFG+DPLGL E++HCR+AMLG AG+
Sbjct: 57 FFSDKAAQSYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYSEVIHCRYAMLGMAGMV 116
Query: 108 IPELLTKLGILNTPS---WY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADII 158
PE+L KLG++ + W+ + G+ +Y+ LF +E++ + +AE RRW D
Sbjct: 117 APEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQFAELRRWQDYR 176
Query: 159 KPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
PG + + G D YPGG F+ LG+G + + +L+ KE+KNGRLAM+
Sbjct: 177 HPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGK-DEKSMNDLKLKELKNGRLAMV 235
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
A +G + Q + TG GP NL HLADP + + F
Sbjct: 236 ATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 271
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 30/217 (13%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGA 103
R L F +LDG+LPGD+GFDPLGL EI++ R+AMLGA
Sbjct: 21 KRSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGA 80
Query: 104 AGIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAEGRRW 154
AG PE+L ++G++ + W+ +G + Y+ D TLF++EM +G+AE RR
Sbjct: 81 AGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRA 140
Query: 155 ADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
D KPG + K G + YPGG F+ LG+G E ++EL+ KE+KNGR
Sbjct: 141 QDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKE-LQELKVKEVKNGR 199
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
LAM+AV+G + Q I+TG GP NL+ HLADP H V
Sbjct: 200 LAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVL 236
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 113/194 (58%), Gaps = 20/194 (10%)
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
LW PG P++L G L GD+G+DPLGL E+VH RWAMLG AG+ + E+
Sbjct: 34 LWAPGVVAPDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEV 93
Query: 112 LTKLGILNTPSWYTAGELEYFTDTTT--LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
+ K + + E FT+ L E I + W E RRW D G VN DPIF
Sbjct: 94 V-KPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNFGSVNEDPIF 152
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
NK+ ++GYPGG+ FDPLG+ G+ +KEL+TKEIKNGRLAM+A MG Q TG
Sbjct: 153 KGNKVPNPEMGYPGGI-FDPLGFSKGN---LKELQTKEIKNGRLAMVAYMGFVLQAQATG 208
Query: 230 TGPIDNLIAHLADP 243
GP+ L AHL++P
Sbjct: 209 KGPLAALSAHLSNP 222
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 95/153 (62%), Gaps = 19/153 (12%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L+GSLPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 120 TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
P WY AG+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L +
Sbjct: 62 VPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHEC 121
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
GYPGG+ F+PL + E + KE+ NGR
Sbjct: 122 GYPGGI-FNPLNFAP-----TLEAKEKELANGR 148
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
N L G+ PG FDPLG PE ++ E+ NGR AML V+G + T G
Sbjct: 3 NYLNGS---LPGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIG 58
Query: 232 PIDNLIAHLADPGHATVFAA 251
I+ + D G A FA+
Sbjct: 59 IIN--VPKWYDAGKAEYFAS 76
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 95/153 (62%), Gaps = 19/153 (12%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L+GSLPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGIIN 61
Query: 120 TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
P WY AG+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L +
Sbjct: 62 VPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHEC 121
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
GYPGG+ F+PL + E + KE+ NGR
Sbjct: 122 GYPGGI-FNPLNFAP-----TLEAKEKELANGR 148
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
N L G+ PG FDPLG PE ++ E+ NGR AML V+G + T G
Sbjct: 3 NYLNGS---LPGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIG 58
Query: 232 PIDNLIAHLADPGHATVFAA 251
I+ + D G A FA+
Sbjct: 59 IIN--VPKWYDAGKAEYFAS 76
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 112/197 (56%), Gaps = 20/197 (10%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
+R LW PG PE+L G L GD+G+DPLGL E+ H RWAMLG AG+ +
Sbjct: 31 DRKLWAPGVVAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLV 90
Query: 109 PELLTKLGILNTPSWYTAGELEYFTDTTT--LFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
E++ K + + E FT+ L E I + W E RRW D G VN D
Sbjct: 91 QEIV-KPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGSVNED 149
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
PIF NK+ ++GYPGG+ FDP G+ G+ +KEL+TKEIKNGRLAM+A M Q
Sbjct: 150 PIFKGNKVPNPEMGYPGGI-FDPFGFSKGN---LKELQTKEIKNGRLAMIAYMAFILQAQ 205
Query: 227 YTGTGPIDNLIAHLADP 243
TG GP+ L AHL++P
Sbjct: 206 ATGKGPLAALSAHLSNP 222
>gi|125660620|gb|ABN49455.1| photosystem I chlorophyll a/b binding protein [Pisum sativum]
Length = 144
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 91/143 (63%), Gaps = 6/143 (4%)
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
+ +PE+ T +GI+N P WY AG+ EYF ++TLF++E I + E RRW DI PG VN
Sbjct: 1 MLLPEVFTSIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQ 60
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DPIF L +VGYPGG+ F+PL + E + KEI NGRLAMLA +G QH
Sbjct: 61 DPIFKQYSLPAGEVGYPGGI-FNPLNFAP-----TLEAKEKEIANGRLAMLAFLGFIIQH 114
Query: 226 IYTGTGPIDNLIAHLADPGHATV 248
TG GP DNL+ H++DP H T+
Sbjct: 115 NVTGKGPFDNLLQHISDPWHNTI 137
>gi|383155671|gb|AFG60009.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155672|gb|AFG60010.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155673|gb|AFG60011.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155674|gb|AFG60012.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155675|gb|AFG60013.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155676|gb|AFG60014.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155677|gb|AFG60015.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155678|gb|AFG60016.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155679|gb|AFG60017.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155680|gb|AFG60018.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155681|gb|AFG60019.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155682|gb|AFG60020.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155683|gb|AFG60021.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155684|gb|AFG60022.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155685|gb|AFG60023.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155686|gb|AFG60024.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155687|gb|AFG60025.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
gi|383155688|gb|AFG60026.1| Pinus taeda anonymous locus CL529Contig1_04 genomic sequence
Length = 73
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/73 (94%), Positives = 71/73 (97%)
Query: 168 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227
IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK+KELRTKEIKNGRLAMLAVMGAWFQ Y
Sbjct: 1 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEY 60
Query: 228 TGTGPIDNLIAHL 240
TGTGPIDNL+AHL
Sbjct: 61 TGTGPIDNLLAHL 73
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 94/153 (61%), Gaps = 19/153 (12%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L+GSLPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 120 TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
P WY AG+ EYF ++TLF++E I + E RRW DI PGCVN DPI L +
Sbjct: 62 VPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPILKQYSLAPHEC 121
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
GYPGG+ F+PL + E + KE+ NGR
Sbjct: 122 GYPGGI-FNPLNFAP-----TLEAKEKELANGR 148
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
N L G+ PG FDPLG PE ++ E+ NGR AML V+G + T G
Sbjct: 3 NYLNGS---LPGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIG 58
Query: 232 PIDNLIAHLADPGHATVFAA 251
I+ + D G A FA+
Sbjct: 59 IIN--VPKWYDAGKAEYFAS 76
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 133/262 (50%), Gaps = 41/262 (15%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPE--WLDGSLPGDF 84
+ +A+F G + N A R+ S A D ++ + G++ +LDGSLPGDF
Sbjct: 6 SAQAAFSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDF 65
Query: 85 GFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSW 123
GFDPLGL E++H RWAMLGAAG PE+L G++ W
Sbjct: 66 GFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDATNIKW 125
Query: 124 YTAGELE-------YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT------DPIFP 170
+ +G + Y+ D T+F VE++ + +AE RR D PG + + IF
Sbjct: 126 FESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAIFK 185
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
+ D YPGG +F+ G + +KEL+ KEIKNGRLAMLA++G Q + TG
Sbjct: 186 GS----GDAAYPGGPFFNLFNLGK-TEAAMKELKLKEIKNGRLAMLAMLGYGAQAVMTGK 240
Query: 231 GPIDNLIAHLADPGHATVFAAF 252
GP NL+ HLADP + + F
Sbjct: 241 GPFQNLVEHLADPVNNNILTNF 262
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 110/197 (55%), Gaps = 20/197 (10%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
+R LW PG PE+L G L GD+G+DPLGL E+ H RWAMLG AG+ +
Sbjct: 19 DRKLWAPGVVAPEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLV 78
Query: 109 PELLTKLGILNTPSWYTAGELEYFTDTTT--LFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
E++ K + + E FT+ L E I + W E RRW D G VN D
Sbjct: 79 QEIV-KPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGSVNED 137
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
PIF NK+ ++GYPGG+ FDP G+ G KEL+TKEIKNGRLAM+A M Q
Sbjct: 138 PIFKGNKVPNPEMGYPGGI-FDPFGFSKGD---FKELQTKEIKNGRLAMIAYMAFILQAQ 193
Query: 227 YTGTGPIDNLIAHLADP 243
TG GP+ L AHL++P
Sbjct: 194 ATGKGPLAALSAHLSNP 210
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 94/153 (61%), Gaps = 19/153 (12%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L+GSLPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 120 TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
P WY AG+ EYF ++TLF++E I + E RRW DI PGCVN PIF L +
Sbjct: 62 VPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQGPIFKQYSLAPHEC 121
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
GYPGG+ F+PL + E + KE+ NGR
Sbjct: 122 GYPGGI-FNPLNFAP-----TLEAKEKELANGR 148
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
N L G+ PG FDPLG PE ++ E+ NGR AML V+G + T G
Sbjct: 3 NYLNGS---LPGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIG 58
Query: 232 PIDNLIAHLADPGHATVFAA 251
I+ + D G A FA+
Sbjct: 59 IIN--VPKWYDAGKAEYFAS 76
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 134/265 (50%), Gaps = 41/265 (15%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPE--WLDGSLPGDF 84
+ +A+F G + N A R+ S A D ++ + G++ +LDGSLPGDF
Sbjct: 6 SAQAAFSGKVARPAKANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGSLPGDF 65
Query: 85 GFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSW 123
GFDPLGL E++H RWAMLGAAG PE+L G++ W
Sbjct: 66 GFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDATNIKW 125
Query: 124 YTAGELE-------YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT------DPIFP 170
+ +G + Y+ D T+F VE++ + +AE RR D PG + + IF
Sbjct: 126 FESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAIFK 185
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
+ D YPGG +F+ G + +KEL+ KEIKNGRLAMLA++G Q + TG
Sbjct: 186 GS----GDAAYPGGPFFNLFNLGK-TEAAMKELKLKEIKNGRLAMLAMLGYGAQAVMTGK 240
Query: 231 GPIDNLIAHLADPGHATVFAAFTPK 255
GP NL+ HLADP + + F +
Sbjct: 241 GPFQNLVEHLADPVNNNILTNFAGR 265
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 118/216 (54%), Gaps = 29/216 (13%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGS-LPGDFGFDPLGL-------------EIVH 95
RS V AAA N W PG+ P L+ S LPG+FGFDPLGL E VH
Sbjct: 27 RSGVVVRAAARAN---WLPGNDFPAHLENSPLPGNFGFDPLGLGANPERLAWFAESERVH 83
Query: 96 CRWAMLGAAGIFIPELLTKLGILNTPSWYT-AGELEYFTDTTTLFIVEMIFIGWAEGRRW 154
CRWAMLG AGI + EL+ WYT A ++E D T L E+ + W E RR
Sbjct: 84 CRWAMLGVAGILVQELVRP-----DVFWYTSAVDVELPFDITGLVAFELFVMHWVESRRG 138
Query: 155 ADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
DI PG ++ DPIF N KL + GYPGG+ F P P ++EL+ KEIKNGRLA
Sbjct: 139 YDIKNPGSMDQDPIFSNFKLPSHEPGYPGGI-FAPF-----VPGSMEELKVKEIKNGRLA 192
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
MLA +G +G P+ L HL+DP + T+F+
Sbjct: 193 MLAFIGFTMAAQISGLNPLAALGEHLSDPLNTTIFS 228
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 112/208 (53%), Gaps = 32/208 (15%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFI 108
F S +LDG+LPGDFGFDPLGL E++HCRWAMLG AG
Sbjct: 55 FTSSQALGYLDGTLPGDFGFDPLGLCDPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLA 114
Query: 109 PELLTKLGIL----NTPSWYTAGEL-------EYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L +G + W+ +G + Y+TD TLF VE I + +AE +RW D
Sbjct: 115 PEVLATIGAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDY 174
Query: 158 IKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
PG + G + YPGG +F+ L G +PE +K+L+T EI+NGRLAM
Sbjct: 175 QSPGSQGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGK-TPEAMKKLQTNEIRNGRLAM 233
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADP 243
+A +G + Q + T GP NL+ HLADP
Sbjct: 234 IACLGCFGQAVMTTKGPFANLLDHLADP 261
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 120/228 (52%), Gaps = 38/228 (16%)
Query: 45 ATAGTRSVSVSAAAADP---------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---- 91
A AGTR V+ S + + R LW PG P++LDG+L GD+GFDP+GL
Sbjct: 9 ALAGTRVVAKSTSRSSARAGNVVVRAERSLWAPGVASPKYLDGNLAGDYGFDPMGLGANP 68
Query: 92 ---------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYF-------TDT 135
E+ + RWAMLG AGI E++ WY+AG E +
Sbjct: 69 ERLTWYRQAELQNARWAMLGVAGILGQEIINP-----EQWWYSAGMPENLPSFDGNKVNM 123
Query: 136 TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 195
+ E + + + E RRW DI K VN DP PN K+ ++GYPGG FDPLG+ G
Sbjct: 124 GGILAWEFLLMHFVEVRRWQDIRKKDSVNADPFNPNLKVPNPEMGYPGGP-FDPLGFSKG 182
Query: 196 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
+ KE++TKEIKNGRLAM+A + Q TG GP+ NL HLA P
Sbjct: 183 N---FKEVQTKEIKNGRLAMVAFVAFTIQAQATGKGPLANLTDHLASP 227
>gi|161376574|gb|ABX71549.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376576|gb|ABX71550.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376578|gb|ABX71551.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376580|gb|ABX71552.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376582|gb|ABX71553.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376584|gb|ABX71554.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376586|gb|ABX71555.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376588|gb|ABX71556.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376590|gb|ABX71557.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376592|gb|ABX71558.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376594|gb|ABX71559.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376596|gb|ABX71560.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376598|gb|ABX71561.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376600|gb|ABX71562.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376602|gb|ABX71563.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376604|gb|ABX71564.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376606|gb|ABX71565.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376608|gb|ABX71566.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376610|gb|ABX71567.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
Length = 135
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 87/134 (64%), Gaps = 6/134 (4%)
Query: 115 LGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
+GILN P WY AG+ EYF ++TLF++E I + E RRW DI PG VN DPIF N L
Sbjct: 1 IGILNVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSL 60
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
+VGYPGG+ F+PL + + E + KE+ NGRLAMLA +G QH TG GP D
Sbjct: 61 PPNEVGYPGGI-FNPLNFAPTA-----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFD 114
Query: 235 NLIAHLADPGHATV 248
NL+ HL+DP H T+
Sbjct: 115 NLLQHLSDPWHNTI 128
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 115/216 (53%), Gaps = 35/216 (16%)
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------------EIVHCRWAMLGA 103
R L P + +LDG+LPGD GFDPLGL E+VH RWAMLGA
Sbjct: 8 RLLILPSVSSLSYLDGTLPGDMGFDPLGLFDPTNGSAGFMSQRWLHTAEVVHGRWAMLGA 67
Query: 104 AGIFIPELLTKLGILNTPS---WYTAGEL-------EYFTDTTTLFIVEMIFIGWAEGRR 153
AG PE L ++ + W+ G L +Y T LF+++M +G E R
Sbjct: 68 AGCLAPEYLAHEKVIPKATGLLWFKTGFLPPVSAGFDYGLPVTALFLIQMGLMGTVESLR 127
Query: 154 WADIIKPGCVNTDPIFPN--NKLTGTDV----GYPGGLWFDPLGWGSGSPEKVKELRTKE 207
WA++ PG + ++P+ P +L GT YPGGL F+PLG G+ P ++E + E
Sbjct: 128 WAELSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGATRPAVMREYQQSE 187
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
I++GRLAM+A +G Q + TG GP N +AHL DP
Sbjct: 188 IRHGRLAMVACLGYAAQAVVTGKGPYTNWVAHLEDP 223
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 127/248 (51%), Gaps = 41/248 (16%)
Query: 41 RKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPE--WLDGSLPGDFGFDPLGL------- 91
+ N A R+ S A D ++ + G++ +LDG+LPGDFGFDPLGL
Sbjct: 7 KANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGTLPGDFGFDPLGLLDPVNSG 66
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYTAGELE------- 130
E++H RWAMLGAAG PE+L G++ W+ +G +
Sbjct: 67 GFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYDG 126
Query: 131 YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT------DPIFPNNKLTGTDVGYPGG 184
Y+ D T+F VE++ + +AE RR D PG + + IF + D YPGG
Sbjct: 127 YWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAIFKGS----GDAAYPGG 182
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
+F+ G + +KEL+ KEIKNGRLAMLA++G Q + TG GP NL+ HLADP
Sbjct: 183 PFFNLFNLGK-TEAAMKELKLKEIKNGRLAMLAMLGYGAQAVLTGKGPFQNLVEHLADPV 241
Query: 245 HATVFAAF 252
+ + F
Sbjct: 242 NNNILTNF 249
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 130/258 (50%), Gaps = 33/258 (12%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPE--WLDGSLPGDF 84
+ +A+F G + N A R+ S A D ++ + G++ +LDG+LPGDF
Sbjct: 7 SAQAAFSGKAARPAQANRARLVCRAEEKSIATVDRSKDQLYVGASQSSLAYLDGTLPGDF 66
Query: 85 GFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---W 123
GFDPLGL E++H RWAMLGAAG PE+L G++ + W
Sbjct: 67 GFDPLGLLDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILGAAGLIPEKTNIVW 126
Query: 124 YTAGELE-------YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 176
Y +G + Y+ D T+F +E++ + +AE RR D PG + K+
Sbjct: 127 YESGVIPPAGSYDGYWADPYTIFFIEIVAMQFAELRRLQDFRYPGSMGKQYFLGLEKIFA 186
Query: 177 T--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
D YPGG +F+ G + +KEL+ KEIKNGRLAMLA++G Q T GP
Sbjct: 187 GSGDPAYPGGPFFNLFNLGK-TEAAMKELKLKEIKNGRLAMLAMLGYGAQATLTREGPFQ 245
Query: 235 NLIAHLADPGHATVFAAF 252
NL+ HLADP + + F
Sbjct: 246 NLLDHLADPVNNNILTNF 263
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 114/222 (51%), Gaps = 35/222 (15%)
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL--------------------EIVHCRWAMLG 102
R L P ++ +LDG+LPGDFGFDPLGL E++H RWAMLG
Sbjct: 1 RLLIMPTASSLSYLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLG 60
Query: 103 AAGIFIPELLTKLGILNTPS---WYTAGEL-------EYFTDTTTLFIVEMIFIGWAEGR 152
AAG PE L ++ + W+ G L +Y LF V+M+ +G AEG
Sbjct: 61 AAGCLAPEYLAHEKVIPKATGLLWFKTGFLPQASAGFDYGLPLGVLFAVQMVMMGVAEGL 120
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGT----DVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
R A+ I PG + + + KL T YPGGL F+PLG G P ++E++ EI
Sbjct: 121 RGAEYIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGE-KPAAMREMQQAEI 179
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
++GRLAMLA +G Q + TG GP DN HL +P V +
Sbjct: 180 RHGRLAMLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLS 221
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 116/203 (57%), Gaps = 30/203 (14%)
Query: 79 SLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNT 120
SLPGD+GFDPLGL EI++ R+AMLGAAG PE+L K G++
Sbjct: 14 SLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPA 73
Query: 121 PS---WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
+ W+ AG Y+ D TLF++EM +G+AE RR D PG +
Sbjct: 74 ETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGL 133
Query: 172 NK-LTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
K L G+ + YPGG +F+PLG+G + +KEL+ KE+KNGRLAMLA++G + Q + TG
Sbjct: 134 EKGLAGSGNPAYPGGPFFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTG 192
Query: 230 TGPIDNLIAHLADPGHATVFAAF 252
GP NL+ HLADP + V +
Sbjct: 193 VGPYQNLLDHLADPVNNNVLTSL 215
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 121/244 (49%), Gaps = 38/244 (15%)
Query: 40 LRKNGATAGTRS---VSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
L N A G R+ S A R WFPG+ PE+L G L GD+GFDPLG
Sbjct: 4 LVANKAALGFRAPAQARRSVVARAEQRASWFPGNPAPEYLKGELAGDYGFDPLGFGDEPR 63
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGI------LNTPSWYTAGELEYFT---D 134
E+VHCRWAMLGAAGI +PE+ K G+ L P W+ AG++ +
Sbjct: 64 RLEWMVQAELVHCRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAGKVVAESGPWS 123
Query: 135 TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP----------NNKLTGTDVGYPGG 184
+L + +GWAE +R D +KPG + L + GYPGG
Sbjct: 124 MGSLTFTMFLLMGWAEHKRLYDFVKPGSQAVGWAWAPLGLGSITGVEEPLVAKENGYPGG 183
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI-YTGTGPIDNLIAHLADP 243
+ FDP S + K K + E+ NGRLAM A+ G QHI Y G GPIDNL+ H+++P
Sbjct: 184 I-FDPFQM-SKNEAKYKWYKQSEVTNGRLAMTAMFGFVSQHIAYPGKGPIDNLVDHVSNP 241
Query: 244 GHAT 247
T
Sbjct: 242 TKVT 245
>gi|315140122|gb|ADT81035.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140124|gb|ADT81036.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140126|gb|ADT81037.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140128|gb|ADT81038.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140130|gb|ADT81039.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140132|gb|ADT81040.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140134|gb|ADT81041.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140136|gb|ADT81042.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
Length = 128
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 89/133 (66%), Gaps = 6/133 (4%)
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGR 152
+V+ R MLG AG+ IPE+LT +GILN P WY AG++EYF ++TLF++E I + E R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
RW DI PG VN DPIF + L DVGYPGG+ F+PL + SP E + KE+ NGR
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGI-FNPLNF---SPS--LEAKEKELANGR 114
Query: 213 LAMLAVMGAWFQH 225
LAMLA +G QH
Sbjct: 115 LAMLAFLGFVVQH 127
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 124/233 (53%), Gaps = 38/233 (16%)
Query: 53 SVSAAAADPNRPLWFPGSTPP--EWLDGSLPGDFGFDPLGL------------------- 91
S A D ++ + + GS ++LDG+LPGD+GFDPLGL
Sbjct: 45 QTSVAKVDRSKDVLYVGSDAAALKYLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRW 104
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYTAGEL-------EYFTDTTT 137
E++H RWAMLGAAG PE+L K G++ + W+ G + +++ D T
Sbjct: 105 LQYSEVIHARWAMLGAAGCIAPEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFT 164
Query: 138 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDV-GYPGGLWFDPLGWGSG 195
LF +E++ I +AE +R D PG + L G+D YPGG +F+ +G
Sbjct: 165 LFFIEVVAIQFAELKRLQDYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKT 224
Query: 196 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
E +K+L+ EIKNGRLAMLA+ G Q + TG GP DNL+AHLADP A +
Sbjct: 225 EAE-MKKLKLNEIKNGRLAMLAMFGYGAQAVITGDGPFDNLLAHLADPTGANL 276
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 108/220 (49%), Gaps = 44/220 (20%)
Query: 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGA 103
AA+ RP WFPG+ P WL G PGD GFDPLGL E+ H RWAMLG
Sbjct: 354 AASGEKRPTWFPGAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGL 413
Query: 104 AGIFIPELLTKLGILNTPSWYTAG------ELEYF--------TDTTTLFIVEMIFIGWA 149
G +PE+ LGI P+WY AG L+Y ++ +F ++
Sbjct: 414 VGCLVPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPI 473
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
E RW I P + + YPGG FDPL G+ SPE L+ KEIK
Sbjct: 474 EAWRWNGQIAPEAKSAE-----------RTTYPGGP-FDPLKLGA-SPE----LKLKEIK 516
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
NGRLAM+ + G W Q TG GP+ NL AHLADP H +
Sbjct: 517 NGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLL 556
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 108/220 (49%), Gaps = 44/220 (20%)
Query: 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGA 103
AA+ RP WFPG+ P WL G PGD GFDP GL E+ H RWAMLG
Sbjct: 145 AASGEKRPTWFPGAEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGL 204
Query: 104 AGIFIPELLTKLGILNTPSWYTAG------ELEYF--------TDTTTLFIVEMIFIGWA 149
G +PE+ LGI P+WY A L+Y ++ + + + ++ +G
Sbjct: 205 VGCLVPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPV 264
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
E RW + + + YPGG FDPL G+ SPE L+ KEIK
Sbjct: 265 EAWRWNGALA-----------SEAKSAERTTYPGGP-FDPLKLGA-SPE----LKLKEIK 307
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
NGRLAM+ + G W Q TG GP+ NL AHLADP H +
Sbjct: 308 NGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLL 347
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 73/155 (47%), Gaps = 31/155 (20%)
Query: 109 PELLTKLGILNTPSWYTAG------ELEYF--------TDTTTLFIVEMIFIGWAEGRRW 154
PE+ LGI P+WY AG L+Y ++ +F ++ E RW
Sbjct: 1 PEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRW 60
Query: 155 ADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
I P + + YPGG FDPL G+ SPE L+ KEIKNGRLA
Sbjct: 61 NGQIAPDAKSKE-----------WTTYPGGP-FDPLKLGA-SPE----LKLKEIKNGRLA 103
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
M+ + G W Q TG GP+ NL AHLADP H +
Sbjct: 104 MVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLL 138
>gi|207853236|gb|ACI25403.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 86/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E+I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIELILFHYVEVRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 111/221 (50%), Gaps = 30/221 (13%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVH 95
+R+ V R LW PG P LDGSLPGDFGFDPLGL E VH
Sbjct: 25 SRARPVRQTVVRAERALWLPGGDAPAHLDGSLPGDFGFDPLGLGADPERLAWFAESERVH 84
Query: 96 CRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTT------LFIVEMIFIGWA 149
RWAML AGI + E++ WY A + L E+ + +
Sbjct: 85 ARWAMLAVAGIAVQEVVRP-----DVFWYEAALKSPMPFGNSPAAILGLVAFELFAMHFV 139
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
E RR D PG + DPIF NNKL +VGYPGG+ F P+ P + EL+ KEIK
Sbjct: 140 EVRRAYDFKNPGSQDQDPIFSNNKLPKHEVGYPGGI-FAPV-----IPGDLAELKLKEIK 193
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
NGRLAMLA G Q TG GP+ +L HL++P T+F+
Sbjct: 194 NGRLAMLAFAGFVMQAQVTGKGPLASLGDHLSNPIGTTIFS 234
>gi|207853208|gb|ACI25389.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 86/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G++EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKVEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G FA+
Sbjct: 59 DAGKVEYFAS 68
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 110/193 (56%), Gaps = 30/193 (15%)
Query: 82 GDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS- 122
GDFGFDPLGL EI++ R+AMLGA G PE+L K G++ +
Sbjct: 1 GDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAETA 60
Query: 123 --WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
W+ AG Y+ D TLF++EM +G+AE RR+ D KPG + K
Sbjct: 61 LPWFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKG 120
Query: 175 TGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
G D YPGG +F+PLG+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP
Sbjct: 121 LGGSGDPAYPGGPFFNPLGFGK-DEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGP 179
Query: 233 IDNLIAHLADPGH 245
NL+ HLADP H
Sbjct: 180 FQNLLDHLADPWH 192
>gi|207853256|gb|ACI25413.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 138/265 (52%), Gaps = 34/265 (12%)
Query: 11 AAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGS 70
AA++SP + G+ +S GK+L++ + ++V + AA +R LWFPG+
Sbjct: 3 AAVASP-----MTCTGSKASSAFSGKQLRVS---SAVRPKAVRRAVVAAAADRDLWFPGN 54
Query: 71 TP--PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
T P++LDGSL GD GFDPLGL E+ H R AM G AGI + LL
Sbjct: 55 TAVVPDYLDGSLVGDNGFDPLGLGSSPEQLSWNVHAEVFHGRLAMTGCAGILLTSLL-HA 113
Query: 116 GILNTPSWYTAGELEYFTDTTTLF----IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
G + P WY AG++ + F ++ G+AE +R DI PG + + +
Sbjct: 114 GGADVPEWYEAGKVYMEKNPNVSFGALVYSTIVLSGFAEFKRLNDIRNPGSQGSGILPED 173
Query: 172 NKLTGTDVG------YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
K G G Y GG +FDP+G GSPE+ + + EI+NGRLAM+ +G Q+
Sbjct: 174 FKGVGGPQGRTVGGPYVGGRFFDPMGLCRGSPEQTLKYKWNEIRNGRLAMIGFLGFAAQY 233
Query: 226 IYTGTGPIDNLIAHLADPGHATVFA 250
TG GPIDNLI H++DP H +
Sbjct: 234 CATGKGPIDNLIDHVSDPTHVNFIS 258
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 30/216 (13%)
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAA 104
R L F +LDG+LPGD+GFDPLGL EI++ R+AMLGAA
Sbjct: 7 RSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAA 66
Query: 105 GIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAEGRRWA 155
G PE+L ++G++ + W+ +G + Y+ D TLF++E+ +G+AE RR
Sbjct: 67 GAIAPEILGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLELALMGFAEHRRAQ 126
Query: 156 DIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 213
D KPG + K G + YPGG F+ LG+G + +++KEL+ KEIKNGRL
Sbjct: 127 DYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGK-NEKELKELKLKEIKNGRL 185
Query: 214 AMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
AM+AV+G + Q I+TG GP NL+ HLADP H V
Sbjct: 186 AMMAVLGYFIQAIFTGVGPFQNLLDHLADPVHNNVL 221
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 101/176 (57%), Gaps = 20/176 (11%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAADPN---RPLWFPGSTPPEWLDGSLPGDFGFDPLG 90
G + + K+G A + V A A P RPLW+PG+ PEWL+GSLPGD+GFDP+G
Sbjct: 22 GPVRAPVAKSGRNAAPKRSVVRAGGAAPEPSERPLWYPGTKAPEWLNGSLPGDYGFDPVG 81
Query: 91 L-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTT 137
E+VH RWAMLG AG+ EL+ + + P WY AG++ YF DT T
Sbjct: 82 FGSSPSSLRWMVHAELVHARWAMLGVAGVLGQELV-HVTNGSIPHWYEAGKVSYFADTPT 140
Query: 138 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK--LTGTDVGYPGGLWFDPLG 191
L +V I +G+ E +R+ DI+ PG P F + + GT GYPGG+ FDPLG
Sbjct: 141 LIVVMHILMGFVETKRYFDIVNPGS-QAQPGFAGAERLMLGTSPGYPGGILFDPLG 195
>gi|207853200|gb|ACI25385.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853202|gb|ACI25386.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853204|gb|ACI25387.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853218|gb|ACI25394.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853220|gb|ACI25395.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853222|gb|ACI25396.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853224|gb|ACI25397.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853226|gb|ACI25398.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853228|gb|ACI25399.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853230|gb|ACI25400.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853234|gb|ACI25402.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853238|gb|ACI25404.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853240|gb|ACI25405.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853248|gb|ACI25409.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853252|gb|ACI25411.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853254|gb|ACI25412.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853260|gb|ACI25415.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853264|gb|ACI25417.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853268|gb|ACI25419.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853274|gb|ACI25422.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853276|gb|ACI25423.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853282|gb|ACI25426.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 113/199 (56%), Gaps = 27/199 (13%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P +L+ LPG +GFDPL L E+VH R+AM AGI IPE+L
Sbjct: 38 WLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEVL 96
Query: 113 TKLGILNTPSWYTAGELEYFTDTT-----TLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
G +N P WY AG+ Y +++ TL +E+ + E +RW D KPG +
Sbjct: 97 KAFGAVNLPVWYEAGK--YAQESSPIPFNTLIALEIFAFNFVEIKRWQDFKKPGSQGEEG 154
Query: 168 IFPNNK--LTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
F + GT + GYPGG+ FDPLG G + +LR EIKNGRLAMLA +G Q
Sbjct: 155 SFVGLEGFFKGTGENGYPGGV-FDPLGLSKGPGYEAMKLR--EIKNGRLAMLAFIGFASQ 211
Query: 225 HIYTGTGPIDNLIAHLADP 243
++ TG GPI+NL+ HL++P
Sbjct: 212 YLATGKGPIENLLDHLSNP 230
>gi|207853250|gb|ACI25410.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPRWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPRWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|207853280|gb|ACI25425.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPGNLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
>gi|207853258|gb|ACI25414.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQCSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|207853244|gb|ACI25407.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E + + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFVLFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 114/234 (48%), Gaps = 35/234 (14%)
Query: 51 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------- 91
+ V A L F +L G+LP D+GFDPLGL
Sbjct: 11 AAHVQETADRSKDTLLFASDQSLSYLTGALPADYGFDPLGLLDPEGKGAGFVSPAWLQYS 70
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGIL-NTPS---WYTAGEL-------EYFTDTTTLFI 140
E++H RWAMLGAAG PE+L G++ TP W+ +G + +Y+ D +LF
Sbjct: 71 EVIHARWAMLGAAGCIAPEILATAGVIPQTPDEVIWFKSGVIPPAGVYDKYWLDPYSLFF 130
Query: 141 VEMIFIGWAEGRRWADIIKPGCVNTDPIF-PNNKLTGT-DVGYPGGLWFDPLGWGSGSPE 198
+E+I + +AE RRW D PG L G+ D YPGG +F+ G
Sbjct: 131 IEVILVQFAELRRWQDFRNPGSQGKQYFLGLEEVLKGSGDPSYPGGQFFNLFNLGKSD-- 188
Query: 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+KEL+TKE+KNGRLAMLAV G Q + T GP NL HL+DP + F
Sbjct: 189 -LKELKTKELKNGRLAMLAVFGYGAQAVITAEGPFKNLTDHLSDPTGHNILTNF 241
>gi|207853242|gb|ACI25406.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 84/137 (61%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|207853272|gb|ACI25421.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 84/137 (61%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|207853278|gb|ACI25424.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + TG G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 113/202 (55%), Gaps = 30/202 (14%)
Query: 80 LPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTP 121
LPGD+GFDPLGL E+++ R+AMLGA G PE+ K+GI+
Sbjct: 6 LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPPE 65
Query: 122 S---WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
+ W+ AG Y+ D+ TLF+ M +G+AE RR D PG +
Sbjct: 66 TALPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQYFLGLE 125
Query: 173 K-LTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
K L G+ D YPGG F+PLG+G + +++ EL+ KEIKNGRLAMLA++G + Q + TG
Sbjct: 126 KFLAGSGDPSYPGGPLFNPLGFGK-TEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGV 184
Query: 231 GPIDNLIAHLADPGHATVFAAF 252
GP NL+ HLADP + V +
Sbjct: 185 GPFQNLLDHLADPVNNNVLTSL 206
>gi|207853270|gb|ACI25420.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL ++V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAKLVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ ++ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAKLVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 113/226 (50%), Gaps = 41/226 (18%)
Query: 52 VSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRW 98
V+V+A++ W PG P +LDGS PGDFGFDPLGL E++HCRW
Sbjct: 36 VAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRW 95
Query: 99 AMLGAAGIFIPELLTKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAE 150
AML GI +PE L + W G+ Y T+ ++E + I + E
Sbjct: 96 AMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVE 155
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
+R + DP YPGG FDPLG+ S PEK+KE + KEIKN
Sbjct: 156 HQR--------SMEKDP---------EKKKYPGGA-FDPLGY-SKDPEKLKEYKVKEIKN 196
Query: 211 GRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
GRLA+LA +G Q Y GTGP++NL HLADP H + P+
Sbjct: 197 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 242
>gi|207853206|gb|ACI25388.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853210|gb|ACI25390.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853212|gb|ACI25391.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853214|gb|ACI25392.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853216|gb|ACI25393.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 84/137 (61%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+ T +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G++EYF +TTLF++E I + E RRW DI PGCVN DPIF L + GYPG +
Sbjct: 61 GKVEYFASSTTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G ++T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAAFT 253
D G FA+ T
Sbjct: 59 DAGKVEYFASST 70
>gi|207853232|gb|ACI25401.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ E+F ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEHFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEHFAS 68
>gi|207853266|gb|ACI25418.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 84/137 (61%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFTLFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 111/222 (50%), Gaps = 43/222 (19%)
Query: 75 WLDGSLPGDFGFDPLGL---------------------EIVHCRWAMLGAAGIFIPELLT 113
+L GSLPGDFG+DPL L E++H RWAMLGAAG PE+L
Sbjct: 128 YLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVLG 187
Query: 114 KLGILNTPS---WYTAGEL-----------------EYFTDTTTLFIVEMIFIGWAEGRR 153
K G++ + W+ AG L +Y+TD TL ++ +G+AE RR
Sbjct: 188 KAGVIPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLLFTMLVAMGFAETRR 247
Query: 154 WADIIKPGCVNTDPIFPNNKLT--GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
W + +PG V KLT YPGG +F+ G G+ +++ EL+ KEI+NG
Sbjct: 248 WQEYKEPGSVQKQFFLGLEKLTPPSQQPAYPGGGFFNFAGLGAKDEKQMFELKVKEIRNG 307
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
RLAMLA +G Q T GP NL+ H+ PG + + T
Sbjct: 308 RLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQNLLSRLT 349
>gi|207853262|gb|ACI25416.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 84/137 (61%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EYF ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
+PL + K KEL
Sbjct: 120 SNPLNFAPTLEAKEKEL 136
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PG FDPLG PE ++ E+ NGR AML V+G + T G I+ +
Sbjct: 2 PGDNGFDPLGLAE-DPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN--VPKWY 58
Query: 242 DPGHATVFAA 251
D G A FA+
Sbjct: 59 DAGKAEYFAS 68
>gi|207853246|gb|ACI25408.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 84/137 (61%), Gaps = 14/137 (10%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGD GFDPLGL E+V+ RWAMLG G+ +PE+LT +GI+N P WY A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
G+ EY ++TLF++E I + E RRW DI PGCVN DPIF L + GYPGG+
Sbjct: 61 GKAEYSASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGI- 119
Query: 187 FDPLGWGSGSPEKVKEL 203
F+PL + K KEL
Sbjct: 120 FNPLNFAPTLEAKEKEL 136
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 107/212 (50%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
WFPG P LDGS PGDFGFDPLGL EI HCRWAML G+ +PE L
Sbjct: 73 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL 132
Query: 113 TKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I +AE +R +
Sbjct: 133 GLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TME 184
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K +EL+ KEIKNGRLAMLA +G Q
Sbjct: 185 KDP---------EKKKYPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 233
Query: 225 H-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Y GTGP++NL HLADP H T + +P+
Sbjct: 234 QSAYPGTGPLENLATHLADPWHNTSATSSSPE 265
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 131/273 (47%), Gaps = 64/273 (23%)
Query: 5 CASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRP 64
C++ V ++ +PSS+ RS G +F AT R V++SA
Sbjct: 12 CSAVGVPSLLAPSSRSGRS--GLPFCAF------------ATTSGR-VTMSAE------- 49
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
WFPG P LDGS PGDFGFDPLGL EI HCRWAML G+ +PE
Sbjct: 50 -WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEA 108
Query: 112 LTKLGILNTPSWYTA--GELEYF------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
L + W G+ YF + T+ +E + I +AE +R +
Sbjct: 109 LGLGNWVKAQEWAALPDGQATYFGVPVPWGNLPTILAIEFLAIAFAEQQR--------TM 160
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP YPGG FDPLG+ S P K +EL+ KEIKNGRLAMLA +G
Sbjct: 161 EKDP---------EKKKYPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCV 209
Query: 224 QH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Q Y GTGP++NL AHLADP H + P+
Sbjct: 210 QQSAYPGTGPLENLGAHLADPWHNNIGDIVVPR 242
>gi|18539449|gb|AAL74395.1|AF359127_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
gi|18539451|gb|AAL74396.1|AF359128_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
Length = 122
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 84/126 (66%), Gaps = 6/126 (4%)
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 159
MLG AG+ IPE+LT +G++N P WY AG++EYF ++TLF++E I + E RRW DI
Sbjct: 2 MLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKY 61
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
PG VN DP+F L +VGYPGG+ F+PL + SP E + KE+ NGRLAMLA +
Sbjct: 62 PGSVNQDPLFKQYSLPPNEVGYPGGI-FNPLNF---SPS--MEAKEKELANGRLAMLAFL 115
Query: 220 GAWFQH 225
G QH
Sbjct: 116 GFVVQH 121
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 130/267 (48%), Gaps = 56/267 (20%)
Query: 14 SSPSSQKSRSVAG---ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGS 70
++ ++Q SR V G A K+SF G + G + G+R W PG+
Sbjct: 3 TAAAAQVSRVVTGVATAQKSSFFAGSS-SVSLLGCSNGSRVCMAE----------WLPGN 51
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
P +LDGS PGDFGFDPLGL E++H RWAML G+ IPE L
Sbjct: 52 PRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGYGNW 111
Query: 118 LNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
++ W G+ Y + + +E + I +AE +R N +P
Sbjct: 112 VSAQKWAATPGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQR----------NGEPDP 161
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI-YT 228
K YPGG FDPLG+ G+ ++EL+ KEIKNGRLA++A +G Q I Y
Sbjct: 162 EKRK-------YPGGA-FDPLGFSKGA--NLEELKLKEIKNGRLALVAFLGFAVQAIAYP 211
Query: 229 GTGPIDNLIAHLADPGHATVFAAFTPK 255
GTGP++NL HLADP H T+ P+
Sbjct: 212 GTGPLENLKTHLADPWHNTIAHVIIPR 238
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 118/253 (46%), Gaps = 48/253 (18%)
Query: 27 ATKASFLGGKKLKLRKNG--ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDF 84
A SFL K K + T S+S + +AD W PG P +LDGS PGDF
Sbjct: 13 AVCPSFLSSTKSKFAAAMPVSVGATNSMSRFSMSAD-----WMPGQPRPSYLDGSAPGDF 67
Query: 85 GFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT--AGEL 129
GFDPLGL E++HCRWAML GI +PE L + W G+
Sbjct: 68 GFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQA 127
Query: 130 EYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 183
Y T+ +E + I + E +R + + YPG
Sbjct: 128 TYLGQPVPWGTLPTILAIEFLAIAFVEHQR-----------------SMEKDSEKKKYPG 170
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLAD 242
G FDPLG+ S P K +EL+ KEIKNGRLA+LA +G Q Y GTGP++NL HLAD
Sbjct: 171 GA-FDPLGY-SKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
Query: 243 PGHATVFAAFTPK 255
P H + PK
Sbjct: 229 PWHNNIGDVIIPK 241
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 111/227 (48%), Gaps = 49/227 (21%)
Query: 44 GATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------ 91
GA +G S+SA W PG P +LDGS PGDFGFDPLGL
Sbjct: 35 GAVSGNSRFSMSAE--------WMPGQPRPPYLDGSAPGDFGFDPLGLGEVPSNLERYKE 86
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT--AGELEYFTDTT------TLFIVE 142
E++HCRWAML GI +PE L + W G+ Y T+ +E
Sbjct: 87 SELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIE 146
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 202
+ I + E +R + DP YPGG FDPLG+ S P+K +E
Sbjct: 147 FLAIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGY-SKDPKKFEE 187
Query: 203 LRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATV 248
L+ KEIKNGRLA+LA +G Q Y GTGP++NL HLADP H +
Sbjct: 188 LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 111/207 (53%), Gaps = 32/207 (15%)
Query: 75 WLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLG 116
+LDG+LPGDFGFDPLG+ E++H RWAMLG AGI PE+L +G
Sbjct: 81 YLDGTLPGDFGFDPLGMSDPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGMG 140
Query: 117 ILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
++ + W+T+G + +Y+ + T+F V M + +AE +R D PG P
Sbjct: 141 VIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWFPGSQAETP 200
Query: 168 IFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
+ K G + YPGG WF+P G + + ++ KE+KNGRLAM+A +G Q
Sbjct: 201 LLGWEKGFGGSGNPTYPGGKWFNPFNLGK---DDMASMQKKEVKNGRLAMMAFLGCMVQA 257
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAF 252
TG GP N+ H+ADP A + A F
Sbjct: 258 AVTGEGPWKNICDHVADPFGANMLANF 284
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 133/273 (48%), Gaps = 52/273 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
A+SSPS + G + LGG ++ +RK G A + S P+R L+
Sbjct: 7 ALSSPSLAGTAVKLGPNASQILGGGRVSMRKTGFKAPSGSPWYG-----PDRVLYLGPLS 61
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL++ G
Sbjct: 62 GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNG 121
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GP 179
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 180 LGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL HLADP + +A T
Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 133/273 (48%), Gaps = 52/273 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
A+SSPS + G + LGG ++ +RK G A + S P+R L+
Sbjct: 7 ALSSPSFAGTTVKLGPNASDILGGGRVSMRKTGFKAPSGSPWYG-----PDRVLYLGPLS 61
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL++ G
Sbjct: 62 GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNG 121
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GP 179
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 180 LGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL HLADP + +A T
Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 133/273 (48%), Gaps = 52/273 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
A+SSPS + G + LGG ++ +RK G A + S P+R L+
Sbjct: 7 ALSSPSFAGTXVKLGPNASDILGGGRVSMRKTGFKAPSGSPWYG-----PDRVLYLGPLS 61
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL++ G
Sbjct: 62 GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNG 121
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 122 VKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GP 179
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 180 LGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL HLADP + +A T
Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 127/273 (46%), Gaps = 64/273 (23%)
Query: 5 CASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRP 64
C++ V ++ +PSS+ RS L T+G ++S
Sbjct: 12 CSAVGVPSLLAPSSRSGRS-------------GLPFCAYATTSGRVTMSAE--------- 49
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
WFPG P LDGS PGDFGFDPLGL E+ HCRWAML G+ +PE
Sbjct: 50 -WFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEA 108
Query: 112 LTKLGILNTPSWYTA--GELEYF------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
L + W G+ YF + T+ +E + I +AE +R +
Sbjct: 109 LGLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR--------TM 160
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP YPGG FDPLG+ S P K++E + KEIKNGRLAMLA +G
Sbjct: 161 EKDP---------EKKKYPGGA-FDPLGF-SKDPVKLEEYKLKEIKNGRLAMLAFVGFCV 209
Query: 224 QH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Q Y GTGP++NL +HLADP H + P+
Sbjct: 210 QQSAYPGTGPLENLASHLADPWHNNIGDVVIPR 242
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 105/205 (51%), Gaps = 41/205 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGS PGDFGFDPLGL E++HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 113 TKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q
Sbjct: 160 KDP---------EKKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQ 208
Query: 225 H-IYTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL HLADP H +
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNI 233
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 105/205 (51%), Gaps = 41/205 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGS PGDFGFDPLGL E++HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 113 TKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q
Sbjct: 160 KDP---------EKKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQ 208
Query: 225 H-IYTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL HLADP H +
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNI 233
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 105/205 (51%), Gaps = 41/205 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGS PGDFGFDPLGL E++HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 113 TKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 108 GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q
Sbjct: 160 KDP---------EKKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQ 208
Query: 225 H-IYTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL HLADP H +
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNI 233
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 125/273 (45%), Gaps = 65/273 (23%)
Query: 5 CASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRP 64
C++ V ++ +PSS+ S +L N T+G ++S
Sbjct: 12 CSAVGVPSLLAPSSRWS--------------SRLPFCANATTSGRVTMSAE--------- 48
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
W PG P LDGS PGDFGFDPLGL E+ HCRWAML GI +PE
Sbjct: 49 -WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEA 107
Query: 112 LTKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
L + W G+ Y + T+ ++E + I +AE +R +
Sbjct: 108 LGLGNWVKAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQR--------TM 159
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP YPGG FDPLG+ S P K +E + KEIKNGRLAMLA +G
Sbjct: 160 EKDP---------EKKKYPGGA-FDPLGF-SKDPAKFEEYKLKEIKNGRLAMLAFVGFCV 208
Query: 224 QH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Q Y GTGP++NL HLADP H + P+
Sbjct: 209 QQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 241
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 125/273 (45%), Gaps = 64/273 (23%)
Query: 5 CASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRP 64
C++ V ++ +PSS+ RS L T+G ++S
Sbjct: 10 CSAVGVPSLLAPSSRSGRS-------------GLPFCAYATTSGRVTMSAE--------- 47
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
WFPG P LDGS PGDFGFDPLGL EI HCRWAML G+ +PE
Sbjct: 48 -WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEA 106
Query: 112 LTKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
L + W G+ Y + T+ +E + I +AE +R +
Sbjct: 107 LGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TM 158
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP YPGG FDPLG+ S P K +EL+ KEIKNGRLAMLA +G
Sbjct: 159 EKDP---------EKKKYPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCV 207
Query: 224 QH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Q Y GTGP++NL HLADP H + P+
Sbjct: 208 QQSAYPGTGPLENLATHLADPWHNNIGDIVIPR 240
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 110/197 (55%), Gaps = 30/197 (15%)
Query: 85 GFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---W 123
GFDPLGL E+++ R+AMLGAAG PE+ KLG++ + W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 124 YT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTG 176
+ AG Y+ D TLF+ EM +G+AE RR+ D PG + K L G
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLAG 120
Query: 177 T-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
+ + YPGG +F+PLG+G + +KEL+ KEIKNGRLAMLA++G + Q + TG GP N
Sbjct: 121 SGNPAYPGGPFFNPLGFGK-DEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQN 179
Query: 236 LIAHLADPGHATVFAAF 252
L+ HLADP + V +
Sbjct: 180 LLDHLADPVNNNVLTSL 196
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 104/205 (50%), Gaps = 41/205 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGS PGDFGFDPLGL E++HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 113 TKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P+K +EL+ KEIKNGRLA+LA +G Q
Sbjct: 160 KDP---------EKKKYPGGA-FDPLGY-SKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 208
Query: 225 H-IYTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL HLADP H +
Sbjct: 209 QSAYPGTGPLENLATHLADPWHKNI 233
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 32/207 (15%)
Query: 75 WLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLG 116
+LDG+LPGDFGFDPLG+ E++H RWAMLG AGI PE+L + G
Sbjct: 74 YLDGTLPGDFGFDPLGMSDPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGQAG 133
Query: 117 ILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
++ + W+T+G + +Y+ + T+F V M + +AE +R D PG P
Sbjct: 134 LIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWYPGSQAEQP 193
Query: 168 IFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
+ K G+ + YPGG +F+ G G + + +++ KEIKNGRLAM+A +G Q
Sbjct: 194 LMGWEKGFAGSGNPAYPGGKYFNFAGLGK---DDMAKMQKKEIKNGRLAMMAFLGCMVQA 250
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAF 252
+ TG GP N+ H+ADP A + A F
Sbjct: 251 VVTGEGPWKNICDHVADPFGANMLANF 277
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 106/204 (51%), Gaps = 25/204 (12%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
PE LDG PGD+GFD GL EI+HCRWAMLGA G+ +PELL GI++
Sbjct: 3 PEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGIVH 62
Query: 120 --TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV---------NTDPI 168
P W+ G + DT + + I +G I + + + +
Sbjct: 63 FVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARYCGIEAL 122
Query: 169 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
P D+ YPGG FDPLG S P +EL+ KEIKNGRLAM+A +G + Q T
Sbjct: 123 EPLGIYLPGDLNYPGGALFDPLGL-SKDPVAFEELKVKEIKNGRLAMVAWLGFYVQAAVT 181
Query: 229 GTGPIDNLIAHLADPGHATVFAAF 252
G GP+ NLI HL+DP H + ++F
Sbjct: 182 GKGPVQNLIEHLSDPLHNNILSSF 205
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 126/273 (46%), Gaps = 66/273 (24%)
Query: 5 CASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRP 64
C++ V ++ +PSS +SR L + T+G ++S
Sbjct: 9 CSAVGVPSLLAPSSNRSR---------------LPVCAYATTSGRVTMSAE--------- 44
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
W PG P LDGS PGDFGFDPLGL E+ HCRWAML G+ +PE
Sbjct: 45 -WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEA 103
Query: 112 LTKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
L + W G+ Y + T+ ++E + I +AE +R +
Sbjct: 104 LGLGNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TM 155
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP YPGG FDPLG+ S P K +E + KEIKNGRLAMLA +G
Sbjct: 156 EKDP---------EKKKYPGGA-FDPLGF-SKDPVKFEEYKLKEIKNGRLAMLAFVGFCV 204
Query: 224 QH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Q Y GTGP++NL +HL+DP H + P+
Sbjct: 205 QQSAYPGTGPLENLASHLSDPWHNNIGDIIIPR 237
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 112/207 (54%), Gaps = 32/207 (15%)
Query: 75 WLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLG 116
+LDG+LPGDFGFDPLG+ E++H RWAMLG AG+ PE+L +G
Sbjct: 97 YLDGTLPGDFGFDPLGMSDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGGMG 156
Query: 117 ILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
I+ + W+ +G + +Y+ D TT+F V M+ + +AE +R D PG P
Sbjct: 157 IIPADTGLVWFKSGAIPPQGTFDYWADPTTIFWVNMVLMNFAEVKRGQDYWYPGSQGETP 216
Query: 168 IFPNNK-LTGTDV-GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
+ K G+ YPGG +F+ G + +++ KEIKNGRLAM+A +G Q
Sbjct: 217 LMGWEKGFAGSGAPAYPGGKYFNFANLGK---TDMAKMQKKEIKNGRLAMMAFLGIAVQA 273
Query: 226 IYTGTGPIDNLIAHLADPGHATVFAAF 252
+ TG GP N++ H++DP + A F
Sbjct: 274 VATGEGPFKNIVDHISDPFANNMLAGF 300
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 104/212 (49%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P LDGS PGDFGFDPLGL E+ HCRWAML GI +PE L
Sbjct: 49 WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL 108
Query: 113 TKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y T+ ++E + I +AE +R +
Sbjct: 109 GLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR--------TME 160
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K +E + KEIKNGRLAMLA +G Q
Sbjct: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQ 209
Query: 225 H-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Y GTGP++NL +HLADP H + P+
Sbjct: 210 QSAYPGTGPLENLASHLADPWHNNIGDIIIPR 241
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 132/265 (49%), Gaps = 53/265 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAG-TRSVSVSAAAADPNRPLW---F 67
A+SSPS T + LG ++ +RK TAG T+SVS + P+R + F
Sbjct: 7 ALSSPSLAGKMVKLAPTASEILGEGRITMRK---TAGKTKSVSSDSPWYGPDRVKYLGPF 63
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 64 SGESP-SYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAG-- 180
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 181 GPLGEVTDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSM 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADP 251
>gi|406362893|gb|AFS34654.1| chloroplast chlorophyll a-b binding protein, partial [Leymus
secalinus]
Length = 189
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIVE 142
EI + R AM+G G+ PE L K+G++ + W+ AG + +Y+ D TLF+ E
Sbjct: 15 EIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFE 74
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKV 200
M IG+AE RR D PG + K G D YPGG F+PLG+G+ S +++
Sbjct: 75 MALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEM 134
Query: 201 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
KEL+ KEIKNGRLAMLA +G Q I+TG GP NL+ HL+DP + + +
Sbjct: 135 KELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 186
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 138/278 (49%), Gaps = 55/278 (19%)
Query: 9 AVAAISSPS-SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW- 66
A +SSPS + K+ +A + + +G ++ +RK G +SVS + P+R +
Sbjct: 3 ATMVLSSPSLAGKAVKLAPSPASELMGNGRISMRKTG-----KSVSSGSPWYGPDRVKYL 57
Query: 67 --FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
F G PP +L G PGD+G+D GL E++HCRWAMLGA G PEL
Sbjct: 58 GPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116
Query: 112 LTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 155
L + G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIA 176
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 177 G--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFSELKVKEIKNGRLAM 220
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 221 FSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 105/188 (55%), Gaps = 30/188 (15%)
Query: 85 GFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---W 123
GFDPLGL E+++ R+AMLGAAG PE+ KLG++ + W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 124 YT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTG 176
+ AG Y+ D TLF+ EM +G+AE RR D PG + K G
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFAG 120
Query: 177 T-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
+ D YPGG +F+PLG+G + +KEL+ KEIKNGRLAMLA++G + Q + TG GP N
Sbjct: 121 SGDPAYPGGPFFNPLGFGK-DEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQN 179
Query: 236 LIAHLADP 243
L+ HLADP
Sbjct: 180 LLDHLADP 187
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VSVSA+ + P+R L+ F G PP +L G PGD
Sbjct: 28 AGVHGEARVTMRK----ATTKKVSVSASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 82
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 83 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 142
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGXVTDPI------ 194
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 195 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 247 NLADHLADP 255
>gi|149392115|gb|ABR25924.1| chloroplast chlorophyll a-b binding protein 8 [Oryza sativa Indica
Group]
Length = 191
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 11/172 (6%)
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVE 142
E+ + R AM+G G+ PELL KLG++ + W+ AG Y+ D TLF+ E
Sbjct: 17 EVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFE 76
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPEKV 200
+ +G+AE RR+ D PG + K L G+ + YPGG F+PLG+G+ S ++
Sbjct: 77 LALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEM 136
Query: 201 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
KEL+ KEIKNGRLAMLA +G Q ++TG GP+ NL+ HLADP H + +
Sbjct: 137 KELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 188
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 111/214 (51%), Gaps = 40/214 (18%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPL 89
A FLG + + T TR +S A + +P+W PG P+ L+ +LP D+GFDPL
Sbjct: 3 ACFLG----QTSRVTPTNSTRRMSPVTQATE--QPVWLPGVNVPQHLNRNLPADYGFDPL 56
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELE-----Y 131
GL E+VHCR+AMLG AGI IP LLTK+GILN P WY AG++ +
Sbjct: 57 GLGSEPEALKWYVQAELVHCRFAMLGVAGILIPGLLTKVGILNVPQWYEAGKVAIESQPF 116
Query: 132 FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT---------GTDVGYP 182
+ TL ++ + WAE +RW + PG + +P ++ D YP
Sbjct: 117 GLNFQTLLGFQLFMMTWAETKRWVEFKNPGSQSNPDSYPGAEMLPGKVFALGGSGDPNYP 176
Query: 183 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
GGL F+P+G G S ++ KEI NGR A L
Sbjct: 177 GGL-FNPMGMGDDS------MKVKEIANGRTACL 203
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 127/277 (45%), Gaps = 60/277 (21%)
Query: 2 ASVCASPAVAAISSP-SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
A+ S A++A S SS KSR A +SF+ A + S+SA
Sbjct: 3 ANTLMSSAISAFPSLLSSSKSRFAAAVPLSSFVV----------TNASSSRFSMSAD--- 49
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +LDGS PGDFGFDPL L E++HCRWAML GI
Sbjct: 50 -----WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGIL 104
Query: 108 IPELLTKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIK 159
+PE L + W G+ Y + T+ +E + I + E +R
Sbjct: 105 VPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR------ 158
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
+ DP YPGG FDPLG+ S P+ E + KEIKNGRLA+LA +
Sbjct: 159 --SMEKDP---------EKKKYPGGA-FDPLGY-SKDPKTFHEYKVKEIKNGRLALLAFV 205
Query: 220 GAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
G Q Y GTGP++NL AHLADP H + P+
Sbjct: 206 GFCVQQSAYPGTGPLENLAAHLADPWHNNIGNVIIPQ 242
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 104/205 (50%), Gaps = 41/205 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
WFPG P LDGS PGDFGFDPLGL E+ HCRWAML G+ +PE L
Sbjct: 18 WFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEAL 77
Query: 113 TKLGILNTPSWYTA--GELEYF------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ YF + T+ +E + I +AE +R +
Sbjct: 78 GLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQR--------TME 129
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K +E + KEIKNGRLAMLA +G Q
Sbjct: 130 KDP---------EKKKYPGGA-FDPLGF-SKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQ 178
Query: 225 H-IYTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL +HLADP H +
Sbjct: 179 QSAYPGTGPLENLASHLADPWHNNI 203
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 102/205 (49%), Gaps = 41/205 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P LDGS PGDFGFDPLGL E+ HCRWAML GI +PE L
Sbjct: 49 WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL 108
Query: 113 TKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y T+ ++E + I +AE +R +
Sbjct: 109 GLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR--------TME 160
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K +E + KEIKNGRLAMLA +G Q
Sbjct: 161 KDP---------EKKKYPGGA-FDPLGF-SKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQ 209
Query: 225 H-IYTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL +HLADP H +
Sbjct: 210 QSAYPGTGPLENLASHLADPWHNNI 234
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 108/217 (49%), Gaps = 44/217 (20%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL--------------EIV 94
TR+ SV AAA RP W+PG+TPP+ LDGS+ GD+GFDPL L E+
Sbjct: 21 TRASSVVVAAA---RPTWYPGATPPKHLDGSMLGDYGFDPLRLGSKDKDVLKYYREGELT 77
Query: 95 HCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRW 154
+ RWAM AGI +L+ LG P W ++E D TL IVE++ EG R
Sbjct: 78 NGRWAMAAVAGILFTDLV-GLG----PWWEAGAKVESSFDLKTLIIVEIVTFAILEGFRA 132
Query: 155 ADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
K G P P FDPL S E R KE+KNGRLA
Sbjct: 133 KAYEKTGETGLGPFAP----------------FDPLNMRS------DETRLKELKNGRLA 170
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 251
MLA++G Q G GPI+ L AHLADPGH +F +
Sbjct: 171 MLAILGFSSQAAVQGKGPIECLQAHLADPGHNNIFTS 207
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 111/230 (48%), Gaps = 49/230 (21%)
Query: 48 GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIV 94
GT V++SA W PG P +LDGS PGDFGFDPL L E++
Sbjct: 38 GTSRVTMSAD--------WLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 89
Query: 95 HCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFI 146
HCRWAML GI IPE L + W A G+ Y T+ +E + I
Sbjct: 90 HCRWAMLAVPGILIPEALGLGNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAIEFVAI 149
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
+ E +R + DP YPGG FDPLG+ S P+K +E + K
Sbjct: 150 AFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPKKFEEYKVK 190
Query: 207 EIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
EIKNGRLA+LA +G Q Y GTGP++NL HLADP H + P+
Sbjct: 191 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIVPR 240
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 132/274 (48%), Gaps = 53/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + +G ++ +RK A +SVS + P+R + F
Sbjct: 7 ALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAA----KSVSSGSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 63 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 180 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 103/212 (48%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGS PGDFGFD LGL E++HCRWAML GI +PE L
Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL 108
Query: 113 TKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y T+ +E + I + E +R
Sbjct: 109 GLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR----------- 157
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+ + YPGG FDPLG+ S P K +EL+ KEIKNGRLA+LA++G Q
Sbjct: 158 ------SMEKDSEKKKYPGGA-FDPLGY-SKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209
Query: 225 H-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Y GTGP++NL HLADP H + PK
Sbjct: 210 QSAYLGTGPLENLATHLADPWHNNIGDVIIPK 241
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 117/218 (53%), Gaps = 36/218 (16%)
Query: 60 DPNRPLWFPGSTPPE--WLDGSLPGDFGFDPLGL------------------EIVHCRWA 99
D PL+ G++ +LDGSLPGD+GFDPLGL E++H RWA
Sbjct: 53 DDLAPLYVLGNSDQSLSYLDGSLPGDYGFDPLGLSDPEGAGGFINPQWLAYSEVIHGRWA 112
Query: 100 MLGAAGIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAE 150
MLG AG+ PE+L LGI+ + WY AG + +Y+ + T+F + + +AE
Sbjct: 113 MLGVAGMVAPEVLGGLGIIPQETGLVWYKAGMIPAQGTYDYWANPFTIFWINAALMNFAE 172
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
RR D PG + + K+ G + YPGG +F+ +G G + ++R KEI
Sbjct: 173 LRRAQDYWNPGSMGKQELIGWEKMLGGSGEPAYPGG-FFNIMGQGK---SDMAKMRVKEI 228
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP-GH 245
KNGRLAM+A Q + TG GP+ NLI H++DP GH
Sbjct: 229 KNGRLAMMACFACGAQAVMTGEGPVKNLIDHVSDPFGH 266
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 104/212 (49%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P LDGS PGDFGFDPLGL E+ HCRWAML G+ +PE L
Sbjct: 53 WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEAL 112
Query: 113 TKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y T+ VE + I +AE +R +
Sbjct: 113 GLGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQR--------TME 164
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K++E + KEIKNGRLAMLA +G Q
Sbjct: 165 KDP---------EKKKYPGGA-FDPLGF-SRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQ 213
Query: 225 H-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Y GTGP++NL AHLADP H + P+
Sbjct: 214 QSAYPGTGPLENLAAHLADPWHNNIGDIIIPR 245
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 134/280 (47%), Gaps = 49/280 (17%)
Query: 6 ASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPL 65
A+ + A+SSPS L G + ++ + A +++VS + P+R
Sbjct: 2 ATSSTMALSSPSLAGQAVKLAPNVTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPDRVK 61
Query: 66 W---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
+ F G PP +L G PGD+G+D GL E++HCRWAMLGA G P
Sbjct: 62 YLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 120
Query: 110 ELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 153
ELL++ G+ W+ AG L+Y + ++ ++I +G EG R
Sbjct: 121 ELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAVEGYR 180
Query: 154 WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 213
A P TDP+ YPGG FDPLG PE EL+ KEIKNGRL
Sbjct: 181 IAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRL 224
Query: 214 AMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
AM ++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 225 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 264
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 126/249 (50%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VSVSA+ + P+R L+ F G PP +L G PGD
Sbjct: 28 AGVHGEARVMMRK----ATTKKVSVSASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 82
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 83 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 142
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 194
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 195 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 247 NLADHLADP 255
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 109/217 (50%), Gaps = 29/217 (13%)
Query: 63 RPLWFPGSTP---PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
RP W G P PE L G PGD+GFD GL EI+HCRWAML A G+
Sbjct: 103 RPRWL-GPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGV 161
Query: 107 FIPELLTKLGILN--TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV- 163
IPELL GI++ P W+ G + DT + + I +G I + +
Sbjct: 162 VIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQALLMV 221
Query: 164 --------NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
+ + P D+ YPGG FDPLG S P +EL+ KEIKNGRLAM
Sbjct: 222 GPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGL-SKDPVGFEELKVKEIKNGRLAM 280
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+A +G + Q TG GP+ NL+ HL+DP H + ++F
Sbjct: 281 VAWLGFYLQAAVTGKGPVQNLVEHLSDPLHNNILSSF 317
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 125/273 (45%), Gaps = 66/273 (24%)
Query: 5 CASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRP 64
C++ V ++ +PSS +SR L + T+G ++S
Sbjct: 9 CSAVGVPSLLAPSSNRSR---------------LPVCAYATTSGRVTMSAE--------- 44
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
W PG P LDGS PGDFGFDPLGL E+ HCRWAML G+ +PE
Sbjct: 45 -WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEA 103
Query: 112 LTKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
L + W G+ Y + T+ ++E + I +AE +R +
Sbjct: 104 LGLGNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQR--------TM 155
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP YPGG FDPLG+ S P K +E + KEIKNGRLAMLA +
Sbjct: 156 EKDP---------EKKKYPGGA-FDPLGF-SKDPVKFEEYKLKEIKNGRLAMLAFVAFCV 204
Query: 224 QH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Q Y GTGP++NL +HL+DP H + P+
Sbjct: 205 QQSAYPGTGPLENLASHLSDPWHNNIGDIIIPR 237
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 113/222 (50%), Gaps = 48/222 (21%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
PNRPL+ G + PP +L+G PGD+G+D GL E++H RWA+LGA G
Sbjct: 43 PNRPLFLGGLSGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALG 102
Query: 106 IFIPELLTKLGILNTPS--WYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
+PELL + G+ W+ G L Y + + +V+++ +GW
Sbjct: 103 CVVPELLARNGVAMPADGVWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQLVLMGW 162
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AEG R +N P+ G D YPGG FDPLG P+ + EL+ KE+
Sbjct: 163 AEGYR---------INGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPDTLAELKVKEL 206
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGR+AM A+ G Q I T GP++NL HLA PG VF+
Sbjct: 207 KNGRMAMAAMFGFLVQAIVTQKGPLENLADHLAAPGTNNVFS 248
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 109/226 (48%), Gaps = 46/226 (20%)
Query: 45 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
TA T + S +D W PG P +LDGS PGDFGFDPL L
Sbjct: 33 CTASTNASSRFTMTSD-----WMPGQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKES 87
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YTAGELEYFTDTT------TLFIVEM 143
E++HCRWAML GI +PE L + W G+ Y + T+ ++E
Sbjct: 88 ELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEF 147
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
+ I + E +R + DP YPGG FDPLG+ S P+K E
Sbjct: 148 LSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGY-SKDPKKFHEY 188
Query: 204 RTKEIKNGRLAMLAVMGAWFQHI-YTGTGPIDNLIAHLADPGHATV 248
+ KE+KNGRLA+LA +G Q Y GTGP++NL HLADP H +
Sbjct: 189 KIKEVKNGRLALLAFVGIVVQQTAYPGTGPLENLATHLADPWHNNI 234
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 128/260 (49%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST--P 72
S SS ++V ++ +G ++ +RK A A + VS S+ +R L+ + P
Sbjct: 4 SSSSFAGKAVKNLPSSALIGDARVNMRKTAAKA--KQVSSSSPWYGSDRVLYLGSLSGEP 61
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 121
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 122 GEAVWFMAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGE 179
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 180 IVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 225
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL H+ADP
Sbjct: 226 QAIVTGKGPLENLADHIADP 245
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 109/229 (47%), Gaps = 46/229 (20%)
Query: 48 GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIV 94
GT + S + AD W PG P +LDGS PGDFGFDPL L E++
Sbjct: 35 GTNASSRFSMTAD-----WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELI 89
Query: 95 HCRWAMLGAAGIFIPELLTKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFI 146
HCRWAML GI +PE L + W G+ Y + T+ +E + I
Sbjct: 90 HCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAI 149
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
+ E +R + DP YPGG FDPLG+ S P+K E + K
Sbjct: 150 SFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGY-SKDPKKFHEYKVK 190
Query: 207 EIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTP 254
EIKNGRLA+LA +G Q Y GTGP++NL HLADP H + P
Sbjct: 191 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVLIP 239
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 106/196 (54%), Gaps = 30/196 (15%)
Query: 85 GFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---W 123
GFDPLGL E+ + R+AMLGA G PE+ KLG++ + W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALPW 60
Query: 124 YT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTG 176
+ AG Y+ D TLF+ EM +G+AE RR D PG + K G
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFAG 120
Query: 177 T-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
+ D YPGG +F+PLG+G + +KEL+ KEIKNGRLAMLA++G + Q + TG GP N
Sbjct: 121 SGDPAYPGGPFFNPLGFGK-DEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQN 179
Query: 236 LIAHLADPGHATVFAA 251
L+ HLADP + V +
Sbjct: 180 LLDHLADPVNNNVLTS 195
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 105/205 (51%), Gaps = 41/205 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
WFPG P LDGS PGDFGFDPLGL E+ HCRWAML G+ +PE L
Sbjct: 19 WFPGQPRPVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEAL 78
Query: 113 TKLGILNTPSWYTA--GELEYF------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ YF + T+ +E + I +AE +R +
Sbjct: 79 GLGNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR--------TME 130
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K++E + KEI+NGRLAMLA +G Q
Sbjct: 131 KDP---------EKKKYPGGA-FDPLGF-SKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQ 179
Query: 225 HI-YTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL +HLADP H +
Sbjct: 180 QSPYPGTGPLENLASHLADPWHNNI 204
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 122/248 (49%), Gaps = 48/248 (19%)
Query: 39 KLRKNGATAGTRSVSVSAAAAD---PNRPLWF-PGSTPPEWLDGSLPGDFGFDPLGL--- 91
LR TAG + V+ AA + P+R + P + P +L+G PGD+G+D GL
Sbjct: 14 SLRSAVPTAGKGNRQVTRAAIEFYGPDRATFLGPFTDTPSYLNGEFPGDYGWDTAGLSAD 73
Query: 92 ----------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFT 133
E++H RWAMLGA G PELL K G+ W+ AG L Y
Sbjct: 74 PETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLG 133
Query: 134 DTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 185
+++ + ++I +G AE R A PG L G D YPGG
Sbjct: 134 NSSLVHAQSIIATLACQVILMGGAEAYRAAGE-GPG------------LEGLDSLYPGGP 180
Query: 186 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLADPG
Sbjct: 181 -FDPLGLAD-DPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGV 238
Query: 246 ATVFAAFT 253
FAA T
Sbjct: 239 NNGFAAAT 246
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 109/225 (48%), Gaps = 49/225 (21%)
Query: 62 NRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
NRP + S P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 93 NRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALGC 152
Query: 107 FIPELLTKLGILNTPSWYTAG--------------ELEYFTDTTTLFIVEMIFIGWAEGR 152
PELL G N P W+ AG L + + V+++ +G +E
Sbjct: 153 IFPELLNSAG-FNLPVWFKAGGTIFENGIDYLGNPNLVHAQSALAVLSVQVVLMGASEAY 211
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
R+ N P+ DV YPGG FDPLG+ P K EL+ KEIKNGR
Sbjct: 212 RF---------NGGPLG-----EPADVLYPGGA-FDPLGFAK-DPSKAAELKVKEIKNGR 255
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
LAM A++G + Q + TG GPI+NL HLADP FA FTP
Sbjct: 256 LAMTAMLGYYVQALATGKGPIENLSEHLADPSKNNGFAVAGVFTP 300
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 125/249 (50%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 31 AGVHGEARVTMRK----ATTKKVSASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 85
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 86 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 145
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 197
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 198 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 250 NLTDHLADP 258
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 125/276 (45%), Gaps = 62/276 (22%)
Query: 2 ASVCASPAVAAISSP-SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD 60
++ S A++A S SS KSR A + F GT + S + AD
Sbjct: 3 SNTLMSSAISAFPSLLSSSKSRFATAAPLSCF---------------GTNASSRFSMTAD 47
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
W PG P +LDGS PGDFGFDPL L E++HCRWAML GI
Sbjct: 48 -----WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGIL 102
Query: 108 IPELLTKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIK 159
+PE L + W G+ Y + T+ +E + I + E +R
Sbjct: 103 VPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQR------ 156
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
+ DP YPGG FDPLG+ S P+K E + KEIKNGRLA+LA +
Sbjct: 157 --SMEKDP---------EKKKYPGGA-FDPLGY-SKDPKKFHEYKVKEIKNGRLALLAFV 203
Query: 220 GAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTP 254
G Q Y GTGP++NL HLADP H + P
Sbjct: 204 GFCVQQSAYPGTGPLENLATHLADPWHNNIGNVLIP 239
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 127/266 (47%), Gaps = 49/266 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP 68
A +S S+ +SV ++ G ++ +RK A A + VS + +R L+
Sbjct: 2 ATTTMSLSSAFAGKSVKNVASSALFGEARVTMRKTAAKA--KQVSSGSPWYGADRVLYLG 59
Query: 69 --GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADI 157
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 120 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG- 178
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM +
Sbjct: 179 -GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEVKNGRLAMFS 223
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GP++NL HLADP
Sbjct: 224 MFGFFVQAIVTGKGPLENLADHLADP 249
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 118/234 (50%), Gaps = 51/234 (21%)
Query: 45 ATAGTRSVSVS---AAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
ATAG +S S AA PNR W F ++ P +L G PGD+G+D GL
Sbjct: 346 ATAGRKSTPASDKLAAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITF 405
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT- 136
E++H RWAMLGA G+ PE L K G+ L P W+ AG L+Y ++
Sbjct: 406 AKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNL 465
Query: 137 -------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ +++ +G AE R VN P+ + +D YPGG FDP
Sbjct: 466 VHAQSILAILAFQVVLMGLAEAYR---------VNGGPLGED-----SDALYPGGA-FDP 510
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
LG PE EL+ KE+KNGRLAM A+ G + Q + TG GP++N AH+ADP
Sbjct: 511 LGLAD-DPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADP 563
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 118/234 (50%), Gaps = 51/234 (21%)
Query: 45 ATAGTRSVSVS---AAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
ATAG +S S AA PNR W F ++ P +L G PGD+G+D GL
Sbjct: 586 ATAGRKSTPASDKLAAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITF 645
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT- 136
E++H RWAMLGA G+ PE L K G+ L P W+ AG L+Y ++
Sbjct: 646 AKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNL 705
Query: 137 -------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ +++ +G AE R VN P+ + +D YPGG FDP
Sbjct: 706 VHAQSILAILAFQVVLMGLAEAYR---------VNGGPLGED-----SDALYPGGA-FDP 750
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
LG PE EL+ KE+KNGRLAM A+ G + Q + TG GP++N AH+ADP
Sbjct: 751 LGLAD-DPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADP 803
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 117/234 (50%), Gaps = 51/234 (21%)
Query: 45 ATAGTRSVSVS---AAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
ATAG +S S AA PNR W F + P +L G PGD+G+D GL
Sbjct: 106 ATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITF 165
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT- 136
E++H RWAMLGA G+ PE L K G+ L P W+ AG L+Y ++
Sbjct: 166 AKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNL 225
Query: 137 -------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ +++ +G AE R VN P+ + +D YPGG FDP
Sbjct: 226 VHAQSILAILAFQVVLMGLAEAYR---------VNGGPLGED-----SDALYPGGA-FDP 270
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
LG PE EL+ KE+KNGRLAM A+ G + Q + TG GP++N AH+ADP
Sbjct: 271 LGLAD-DPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADP 323
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 177 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 236
+D YPGG FDPLG PE EL+ KE+KNGRLAM A+ G + Q + TG GP++N
Sbjct: 19 SDALYPGGA-FDPLGLAD-DPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENW 76
Query: 237 IAHLADP 243
AH+ADP
Sbjct: 77 AAHVADP 83
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 125/249 (50%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 28 AGVHGEARVTMRK----ATTKKVSASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 82
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 83 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 142
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 194
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 195 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 247 NLADHLADP 255
>gi|149392118|gb|ABR25925.1| chloroplast chlorophyll a-b binding protein [Oryza sativa Indica
Group]
Length = 171
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 11/167 (6%)
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIG 147
R AM+G G+ PELL KLG++ + W+ AG Y+ D TLF+ E+ +G
Sbjct: 2 RTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFELALVG 61
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRT 205
+AE RR+ D PG + K L G+ + YPGG F+PLG+G+ S ++KEL+
Sbjct: 62 FAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKL 121
Query: 206 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
KEIKNGRLAMLA +G Q ++TG GP+ NL+ HLADP H + +
Sbjct: 122 KEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 168
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 117/234 (50%), Gaps = 51/234 (21%)
Query: 45 ATAGTRSVSVS---AAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
ATAG +S S AA PNR W F + P +L G PGD+G+D GL
Sbjct: 123 ATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITF 182
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT- 136
E++H RWAMLGA G+ PE L K G+ L P W+ AG L+Y ++
Sbjct: 183 AKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNL 242
Query: 137 -------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ +++ +G AE R VN P+ + +D YPGG FDP
Sbjct: 243 VHAQSILAILAFQVVLMGLAEAYR---------VNGGPLGED-----SDALYPGGA-FDP 287
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
LG PE EL+ KE+KNGRLAM A+ G + Q + TG GP++N AH+ADP
Sbjct: 288 LGLAD-DPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADP 340
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 117/234 (50%), Gaps = 51/234 (21%)
Query: 45 ATAGTRSVSVS---AAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
ATAG +S S AA PNR W F + P +L G PGD+G+D GL
Sbjct: 363 ATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITF 422
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT- 136
E++H RWAMLGA G+ PE L K G+ L P W+ AG L+Y ++
Sbjct: 423 AKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNL 482
Query: 137 -------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ +++ +G AE R VN P+ + +D YPGG FDP
Sbjct: 483 VHAQSILAILAFQVVLMGLAEAYR---------VNGGPLGED-----SDALYPGGA-FDP 527
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
LG PE EL+ KE+KNGRLAM A+ G + Q + TG GP++N AH+ADP
Sbjct: 528 LGLAD-DPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADP 580
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 16/106 (15%)
Query: 138 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 197
+ +++ +G AE R VN P+ + +D YPGG FDPLG P
Sbjct: 11 ILAFQVVLMGLAEAYR---------VNGGPLGED-----SDALYPGGA-FDPLGLAD-DP 54
Query: 198 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
E EL+ KE+KNGRLAM A+ G + Q + TG GP++N AH+ADP
Sbjct: 55 ETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADP 100
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 131/265 (49%), Gaps = 53/265 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLW---F 67
A+SSPS G T + +G ++ +RK TAG ++V S+ P+R + F
Sbjct: 7 ALSSPSLAGKAVKLGPTASEIIGEGRITMRK---TAGKPKTVQSSSPWYGPDRVKYLGPF 63
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 64 SGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG-- 180
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 181 GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSM 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADP 251
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 117/225 (52%), Gaps = 42/225 (18%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RPL+ F G+TP +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 51 PDRPLFLGPFSGNTP-SYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWAMLGAL 109
Query: 105 GIFIPELLTKLG--ILNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWA 155
G PELL K L P W+ AG + F+D L + I WA
Sbjct: 110 GCITPELLQKYSRVTLKEPVWFKAGA-QIFSDGGLDYLGNPNLIHAQSILAVWA-----V 163
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
++ G V + N L G G YPGG +FDPLG PE + EL+ KE+KNGR
Sbjct: 164 QVVLMGAVEA---YRTNGLPGVGEGGDLYPGGKYFDPLGLAD-DPETLAELKVKELKNGR 219
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
LAM ++ G + Q I TG GP++NL+ HLA+P +A FA FTP
Sbjct: 220 LAMFSMFGFFVQAIVTGKGPLENLLDHLANPVSNNAWAFATNFTP 264
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 132/274 (48%), Gaps = 53/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + +G ++ +RK A ++VS + P+R + F
Sbjct: 7 ALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAA----KNVSSGSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 63 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 180 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 104/204 (50%), Gaps = 41/204 (20%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
PG P +LDGS PGDFGFDPLGL E++HCRWAML GI +PE L
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 114 KLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEK 112
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DP YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q
Sbjct: 113 DP---------EKKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQ 161
Query: 226 -IYTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL HLADP H +
Sbjct: 162 SAYPGTGPLENLATHLADPWHNNI 185
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 102/204 (50%), Gaps = 41/204 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
WFPG P LDGS PGDFGFDPLGL EI HCRWAML G+ +PE L
Sbjct: 50 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL 109
Query: 113 TKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I +AE +R +
Sbjct: 110 GLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TME 161
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K +EL+ KEIKNGRLAMLA +G Q
Sbjct: 162 KDP---------EKKKYPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 210
Query: 225 H-IYTGTGPIDNLIAHLADPGHAT 247
Y GTGP++N HLADP H T
Sbjct: 211 QSAYPGTGPLENPGTHLADPWHNT 234
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 134/277 (48%), Gaps = 50/277 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + LG ++ +RK+ A A + S S P+R +
Sbjct: 3 ATMALSSPSLAGKAVKLAPSASDVLGEGRVTMRKSTAKAKPAAASGSPWYG-PDRVKYLG 61
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G PP +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 62 PFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG 180
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 181 --GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 109/212 (51%), Gaps = 42/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG+ P +LDGS PGDFGFDPLGL E++H RWAML G+ IPE L
Sbjct: 4 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL 63
Query: 113 TKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
++ W G+ Y + + VE I I +AE +R +
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQRNGE-------- 115
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+DP YPGG FDP+G+ G+ ++EL+ KEIKNGRLA++A +G Q
Sbjct: 116 SDP---------EKRKYPGGA-FDPMGFSKGA--NLEELKLKEIKNGRLALVAFLGFAIQ 163
Query: 225 HI-YTGTGPIDNLIAHLADPGHATVFAAFTPK 255
I Y GTGP++NL HLADP H T+ P+
Sbjct: 164 AIAYPGTGPLENLKTHLADPWHNTIANILIPR 195
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 30/196 (15%)
Query: 85 GFDPLGL------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---W 123
GFDPLGL E+ + R+AMLGA G PE+ KLG++ + W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALPW 60
Query: 124 YT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTG 176
+ AG Y+ D TLF+ EM +G+AE RR D PG + K G
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFAG 120
Query: 177 T-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
+ D YPGG +F+PLG+G +KEL+ KEIKNGRLAMLA++G + Q + TG GP N
Sbjct: 121 SGDPAYPGGPFFNPLGFGK-DETSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQN 179
Query: 236 LIAHLADPGHATVFAA 251
L+ HLADP + V +
Sbjct: 180 LLDHLADPVNNNVLTS 195
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 125/249 (50%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VSVSA+ + P+R L+ F G PP +L G PGD
Sbjct: 28 AGVHGEARVTMRK----AATKKVSVSASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 82
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 83 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 142
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 194
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPL P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 195 ------YPGGS-FDPLRLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 247 NLADHLADP 255
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 131/276 (47%), Gaps = 50/276 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP 68
A A+SSPS + + LG ++ +RK G G + S + P+R +
Sbjct: 3 ATMALSSPSFAGKAVKLAPSASGVLGQGRVTMRKAG---GKPAASSGSPWYGPDRVKYLG 59
Query: 69 --GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADI 157
+ G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 120 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG- 178
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM +
Sbjct: 179 -GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFS 223
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ G + Q I TG GP++NL HLADP + +A T
Sbjct: 224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|383867527|gb|AFH55009.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
gi|383867531|gb|AFH55011.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
Length = 138
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 6/121 (4%)
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGR 152
+V+ R MLG AG+ IPE+LT +GILN P WY AG++EYF ++TLF++E I + E R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
RW DI PG VN DPIF + L DVGYPGG+ F+PL + SP E + KE+ NGR
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGI-FNPLNF---SPS--LEAKEKELANGR 114
Query: 213 L 213
L
Sbjct: 115 L 115
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 109/218 (50%), Gaps = 29/218 (13%)
Query: 62 NRPLWFPGSTP---PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
+RP W G P PE L G PGD+GFD GL EI+HCRWAML A G
Sbjct: 98 DRPRWL-GPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLAALG 156
Query: 106 IFIPELLTKLGILN--TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
+ IPELL G+++ P W+ G + DT + I +G I + +
Sbjct: 157 VVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLM 216
Query: 164 ---------NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
+ + P D+ YPGG FDPLG S P ++L+ KEIKNGRLA
Sbjct: 217 VGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGL-SKDPVAFEDLKVKEIKNGRLA 275
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
M+A +G + Q TG GP+ NL+ HL+DP H + ++F
Sbjct: 276 MVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNNILSSF 313
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 125/249 (50%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ ++ SA+ + P+R L+ F G PP +L G PGD
Sbjct: 31 AGVHGEARVTMRK----ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 85
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 86 YGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 145
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 197
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 198 ------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 250 NLADHLADP 258
>gi|383867523|gb|AFH55007.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
saltuaria]
Length = 138
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 6/121 (4%)
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGR 152
+V+ R MLG AG+ IPE+LT +GILN P WY AG++EYF ++TLF++E I + E R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
RW DI PG VN DPIF + L DVGYPGG+ F+PL + SP E + KE+ NGR
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGI-FNPLNF---SPS--LEAKEKELANGR 114
Query: 213 L 213
L
Sbjct: 115 L 115
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 130/265 (49%), Gaps = 53/265 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLW---F 67
A+SSPS G T + LG ++ +RK TAG ++VS + P+R + F
Sbjct: 7 ALSSPSLAGKAIKLGPTASEILGEGRVTMRK---TAGKPKNVSSGSPWYGPDRVKYLGPF 63
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 64 SGEAP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG-- 180
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 181 GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSM 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADP 251
>gi|383867495|gb|AFH54993.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867497|gb|AFH54994.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867499|gb|AFH54995.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867501|gb|AFH54996.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867503|gb|AFH54997.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867505|gb|AFH54998.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867509|gb|AFH55000.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867511|gb|AFH55001.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867513|gb|AFH55002.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867515|gb|AFH55003.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867517|gb|AFH55004.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867519|gb|AFH55005.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
convallium]
gi|383867521|gb|AFH55006.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
convallium]
gi|383867525|gb|AFH55008.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
gi|383867529|gb|AFH55010.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
Length = 138
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 6/121 (4%)
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGR 152
+V+ R MLG AG+ IPE+LT +GILN P WY AG++EYF ++TLF++E I + E R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
RW DI PG VN DPIF + L DVGYPGG+ F+PL + SP E + KE+ NGR
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGI-FNPLNF---SPS--LEAKEKELANGR 114
Query: 213 L 213
L
Sbjct: 115 L 115
>gi|383867507|gb|AFH54999.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
Length = 138
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 6/121 (4%)
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGR 152
+V+ R MLG AG+ IPE+LT +GILN P WY AG++EYF ++TLF++E I + E R
Sbjct: 1 LVNGRVGMLGVAGMLIPEVLTSIGILNVPKWYDAGKVEYFASSSTLFVIEFILFHYVELR 60
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
RW DI PG VN DPIF + L DVGYPGG+ F+PL + SP E + KE+ NGR
Sbjct: 61 RWQDIKYPGSVNQDPIFKSYSLPPNDVGYPGGI-FNPLNF---SPS--LEAKEKELANGR 114
Query: 213 L 213
L
Sbjct: 115 L 115
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 130/265 (49%), Gaps = 53/265 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAG-TRSVSVSAAAADPNRPLW---F 67
A+SSPS T + LG ++ +RK TAG T++VS + P+R + F
Sbjct: 7 ALSSPSLAGKAVKLNPTTSQILGEGRITMRK---TAGKTKNVSSDSPWYGPDRVKYLGPF 63
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 64 SGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAG-- 180
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 181 GPLGEVIDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSM 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADP 251
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 126/260 (48%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S SS ++V ++ G ++ +RK A A + VS S+ +R L+ P
Sbjct: 9 SSSSFAGKAVKDLPSSALFGEARVTMRKTAAKA--KPVSSSSPWYGSDRVLYLGPLSGDP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 231 QAIVTGKGPLENLADHLADP 250
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 108/219 (49%), Gaps = 29/219 (13%)
Query: 62 NRPLWFPGSTPPEW---LDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
RP W G P E+ L G PGD+GFD GL EI+HCRWAML A G
Sbjct: 105 ERPRWL-GPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG 163
Query: 106 IFIPELLTKLGILN--TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
+ +PELL G+++ P W+ G + DT + I +G I + +
Sbjct: 164 VVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLM 223
Query: 164 ---------NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
+ + P D+ YPGG FDPLG S P ++L+ KEIKNGRLA
Sbjct: 224 VGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGL-SKDPVAFEDLKVKEIKNGRLA 282
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
M+A +G + Q TG GPI NL+ HL+DP H + ++F
Sbjct: 283 MVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSFV 321
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 126/260 (48%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
SPSS ++V ++ G ++ +RK A A + VS + +R L+ P
Sbjct: 9 SPSSFAGKAVKDLPSSALFGEARVTMRKTAAKA--KPVSSGSPWYGSDRVLYLGPLSGDP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HL+DP
Sbjct: 231 QAIVTGKGPLENLADHLSDP 250
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 108/215 (50%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 73 PDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLG 132
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L +T F I E++ +G
Sbjct: 133 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGG 192
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG P++ L+ KEI
Sbjct: 193 AEYYR---II-------------NGLNFEDKLHPGG-PFDPLGLAD-DPDQAAILKVKEI 234
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 235 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDP 269
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 112/233 (48%), Gaps = 49/233 (21%)
Query: 45 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
A AG+ V++SA W PG P +LDGS PGDFGFDPL L
Sbjct: 35 AAAGSARVTMSAD--------WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKES 86
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT--AGELEYFTDTT------TLFIVEM 143
E++HCRWAML G+ +PE L + W G+ Y + T+ +E
Sbjct: 87 ELIHCRWAMLAVPGVLVPEALGLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEF 146
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
+ I + E +R + + YPGG FDPLG+ S P K +E
Sbjct: 147 LAIAFVEHQR-----------------SMEKDTEKKKYPGGA-FDPLGY-SKDPVKFEEY 187
Query: 204 RTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
+ KEIKNGRLA+LA +G Q Y GTGP++NL +HLADP H + P+
Sbjct: 188 KVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNIGDVIIPR 240
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 125/249 (50%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VSVSA+ + P+R L+ F G PP +L G PGD
Sbjct: 31 AGVHGEARVTMRK----AATKKVSVSASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 85
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 86 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 145
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 197
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 198 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 250 NLADHLADP 258
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 126/260 (48%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
SPSS ++V ++ G ++ +RK A A + VS + +R L+ P
Sbjct: 30 SPSSFAGKAVKDLPSSALFGEARVTMRKTAAKA--KPVSSGSPWYGSDRVLYLGPLSGDP 87
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 88 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 147
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 148 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 205
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 206 IVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 251
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HL+DP
Sbjct: 252 QAIVTGKGPLENLADHLSDP 271
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 127/275 (46%), Gaps = 57/275 (20%)
Query: 3 SVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPN 62
++ S VAA +P+ +AG K+ F G + + G+R VS+SA
Sbjct: 4 AMACSQLVAAAVAPT------LAGTQKSKFFG-SAITTPGAAFSNGSR-VSMSAE----- 50
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
W PG P +LDGS PGDFGFDPLGL E++HCRWAML G IP
Sbjct: 51 ---WLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIP 107
Query: 110 ELLTKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPG 161
E L + W G+ Y + +E + I + E RR I P
Sbjct: 108 EALGLGNWVEAQQWAATPGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRR---IGVP- 163
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
+ YPGG FDPLG+ S P+K +E + KE+KNGRLA+LA +G
Sbjct: 164 -------------SAEKRKYPGGA-FDPLGF-SKDPKKFEEFKLKEVKNGRLALLAFLGF 208
Query: 222 WFQ-HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Q Y GTGP+ NL HLADP H + P+
Sbjct: 209 CAQAAAYPGTGPLQNLATHLADPWHNNIANIIIPR 243
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 100/205 (48%), Gaps = 41/205 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGS PGDFGFDPL L E++HCRWAML GI +PE L
Sbjct: 48 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 107
Query: 113 TKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y T+ ++E + I + E +R +
Sbjct: 108 GLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQR--------SME 159
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K E + KEIKNGRLA+LA +G Q
Sbjct: 160 KDP---------EKKKYPGGA-FDPLGY-SKDPAKFHEYKVKEIKNGRLALLAFVGICVQ 208
Query: 225 H-IYTGTGPIDNLIAHLADPGHATV 248
Y GTGP++NL HLADP H +
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNI 233
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 119/254 (46%), Gaps = 53/254 (20%)
Query: 25 AGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLWFPG-----STPPEWL 76
AGA K L KK + A + S +S A P+R ++ P S PE+L
Sbjct: 29 AGAQKIVSLFSKKPAQKPKPAAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYL 88
Query: 77 DGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS- 122
G +PGD+G+DP GL E++H RWAMLGAAG IPE K G P
Sbjct: 89 TGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEA 148
Query: 123 -WYTAGEL-------EYFTDTTTL-----FIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
W+ G L YF ++ + I E+I +G AE R
Sbjct: 149 VWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVILVGGAEYYRI--------------- 193
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
N L D +PGG FDPLG S P++ L+ KEIKNGRLAM ++ + Q TG
Sbjct: 194 -TNGLDLEDKLHPGG-PFDPLGLAS-DPDQAAILKVKEIKNGRLAMFSMFAFFIQAYVTG 250
Query: 230 TGPIDNLIAHLADP 243
GP++NL HL+DP
Sbjct: 251 EGPVENLAKHLSDP 264
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 125/256 (48%), Gaps = 51/256 (19%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLWF-PGSTPPEWLDGSLPGDFGF 86
SFLG LR T G + V+ AA + P+R + P + P +L G PGD+G+
Sbjct: 4 SFLGAS---LRSAVPTKGQGNKQVTRAAIEFYGPDRAGFLGPFTESPSYLKGEFPGDYGW 60
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++H RWAMLGA G PELL K G+ W+ AG
Sbjct: 61 DTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFG 120
Query: 129 ---LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L Y + + + ++I +G AE R A+ PG + G
Sbjct: 121 SDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYR-ANGEGPG------------VEGL 167
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D YPGG FDPLG P+ EL+TKEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 168 DSLYPGGP-FDPLGLAD-DPDTFAELKTKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLS 225
Query: 238 AHLADPGHATVFAAFT 253
HLADPG FAA T
Sbjct: 226 DHLADPGVNNGFAAAT 241
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 108/230 (46%), Gaps = 49/230 (21%)
Query: 48 GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIV 94
GT V++SA W PG P +LDGS PGDFGFDPL L E++
Sbjct: 37 GTSRVTMSAN--------WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 88
Query: 95 HCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFI 146
HCRWAML GI +PE L + W G+ Y + +E + I
Sbjct: 89 HCRWAMLAVPGILVPEALGLGNWVKAQEWAATPGGQATYLGQPVPWGTLPIILAIEFVAI 148
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
+ E +R + + YPGG FDPLG+ S P+K +E + K
Sbjct: 149 AFVEHQR-----------------SMEKDTEKKKYPGGA-FDPLGY-SKDPQKFEEYKVK 189
Query: 207 EIKNGRLAMLAVMGAWFQHI-YTGTGPIDNLIAHLADPGHATVFAAFTPK 255
EIKNGRLA+LA +G Q Y GTGP++NL HLADP H + P+
Sbjct: 190 EIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDVLIPR 239
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 132/274 (48%), Gaps = 53/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + +G ++ +RK+ + VS + P+R + F
Sbjct: 7 ALSSPSFAGKAVKLTPSAPGLMGNARVSMRKSVG----KPVSSGSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 63 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ V+++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 180 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 127/260 (48%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S SS ++V ++ +G ++ +RK A A + VS S+ +R L+ P
Sbjct: 9 SSSSFAGKAVKNLPSSALIGDARVNMRKTAAKA--KQVSSSSPWYGSDRVLYLGPLSGEP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 127 GEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGGS-FDPLGLAE-RPQAFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP+++L H+ADP
Sbjct: 231 QAIVTGKGPLEDLADHIADP 250
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 125/260 (48%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S S+ ++V + LG ++ +RK A A + VS + +R L+ P
Sbjct: 9 SSSTFAGKAVKNVPSLALLGEARVTMRKTAAKA--KQVSSGSPWYGADRVLYLGPLSGEP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL H+ADP
Sbjct: 231 QAIVTGKGPLENLADHIADP 250
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 125/249 (50%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VSVSA+ + P+R L+ F G PP +L G PGD
Sbjct: 31 AGVHGEARVTMRK----ATTKKVSVSASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 85
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 86 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 145
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 197
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 198 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 250 NLADHLADP 258
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 119/254 (46%), Gaps = 53/254 (20%)
Query: 25 AGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLWFPG-----STPPEWL 76
AGA K L KK + A + S +S A P+R ++ P S PE+L
Sbjct: 29 AGAQKIVSLFSKKPAQKPKPAAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYL 88
Query: 77 DGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS- 122
G +PGD+G+DP GL E++H RWAMLGAAG IPE K G P
Sbjct: 89 TGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEA 148
Query: 123 -WYTAGEL-------EYFTDTTTL-----FIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
W+ G L YF ++ + I E++ +G AE R
Sbjct: 149 VWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRI--------------- 193
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
N L D +PGG FDPLG S P++ L+ KEIKNGRLAM ++ + Q TG
Sbjct: 194 -TNGLDLEDKLHPGG-PFDPLGLAS-DPDQAAILKVKEIKNGRLAMFSMFAFFIQAYVTG 250
Query: 230 TGPIDNLIAHLADP 243
GP++NL HL+DP
Sbjct: 251 EGPVENLAKHLSDP 264
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 128/264 (48%), Gaps = 51/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + + G K+ +RK + A ++VS + P+R + F
Sbjct: 7 ALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKA--KTVSSGSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 124 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 228 GFFVQAIVTGKGPLENLADHLADP 251
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 109/215 (50%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 77 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 136
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGEL-------EYFTDTTTL-----FIVEMIFIGW 148
AAG +PE K G P W+ G L YF ++ + I E++ +G
Sbjct: 137 AAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVVLLGG 196
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG P++ L+ KEI
Sbjct: 197 AEYYR---II-------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQAAILKVKEI 238
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 239 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDP 273
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 135/270 (50%), Gaps = 53/270 (19%)
Query: 6 ASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRP 64
A+ A A+SSP+ + + A++A+ G ++ +RK TAG V+ S++ +R
Sbjct: 2 AAAATMALSSPA--MAGTPVKASRAAPFGEGRITMRK---TAGKPKVAASSSPWYGSDRV 56
Query: 65 LWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
L+ PP +L G PGD+G+D GL E++HCRWAMLGA G P
Sbjct: 57 LYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116
Query: 110 ELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 153
ELL + G+ W+ AG L+Y + + ++ +++ +G EG R
Sbjct: 117 ELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176
Query: 154 WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 213
A P DP+ YPGG FDPLG PE EL+ KEIKNGRL
Sbjct: 177 VAG--GPLGEIVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRL 220
Query: 214 AMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
AM ++ G + Q I TG GP++NL HLADP
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 122/258 (47%), Gaps = 45/258 (17%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPE 74
S S+ ++V ++ G ++ +RK A A S S AD L PP
Sbjct: 9 SSSTFAGKAVKNVPLSALFGEARVTMRKTAAKAKQLSSSNPWYGADRVLYLGPLSGEPPS 68
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 69 YLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGE 128
Query: 121 PSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 129 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEIV 186
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q
Sbjct: 187 DPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 232
Query: 226 IYTGTGPIDNLIAHLADP 243
I TG GP++NL H+ADP
Sbjct: 233 IVTGKGPLENLADHIADP 250
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 123/263 (46%), Gaps = 29/263 (11%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST 71
A+SSPS + + LG ++ +RK G A S D + L
Sbjct: 7 ALSSPSLAGKALKLAPSASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYLGPFSGE 66
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG L+Y + + ++ I WA + +I G V I
Sbjct: 127 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----SQVILMGAVEGYRIGG 180
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 181 GPLGEVVDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
Query: 231 GPIDNLIAHLADPGHATVFAAFT 253
GP++NL HLADP + +A T
Sbjct: 239 GPLENLADHLADPVNNNAWAYAT 261
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 131/274 (47%), Gaps = 51/274 (18%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + + + G K +RK A + VS + P+R + F
Sbjct: 7 ALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKA--KPVSSGSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 124 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP+DNL+ HLADP + +A T
Sbjct: 228 GFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYAT 261
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 111/216 (51%), Gaps = 32/216 (14%)
Query: 62 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
+RP W F G+TP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 23 DRPKWLGPFSGNTP-SYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAMLGALG 81
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PELL K G+ W+ AG L+Y + + + +I I + +
Sbjct: 82 CLTPELLAKNGVSFGEAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAI------LASQV 135
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
+ G + ++ G D YPGG +FDPLG P+ EL+ KEIKNGRLAM +
Sbjct: 136 LLMGAIEGYRVYGGPGGEGLDKVYPGGDYFDPLGLAD-DPDTFAELKVKEIKNGRLAMFS 194
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ G + Q I TG GP++NL +HLADP FAA T
Sbjct: 195 MFGFFVQAIVTGKGPLENLESHLADPSVNNGFAAAT 230
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 114/227 (50%), Gaps = 50/227 (22%)
Query: 61 PNRPLWFPGS---TPPEWLDGSLPGDFGFDPLG-------------LEIVHCRWAMLGAA 104
P+RPL F GS PP +L G PGD+G+D G +E++H RWA+LGA
Sbjct: 45 PDRPL-FLGSLSGEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWALLGAL 103
Query: 105 GIFIPELLTKLGIL---NTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFI 146
GI PE+L + G+ + W+ AG L Y + + V++I +
Sbjct: 104 GIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAVQVIVM 163
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
G AEG R A+ PG + G D YPGG FDPLG P+ EL+ K
Sbjct: 164 GAAEGFR-ANGEAPG------------VEGLDTLYPGGP-FDPLGLAD-DPDTFAELKVK 208
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
EIKNGRLAM A G + Q I TG GPI NL HLADPG FA+ T
Sbjct: 209 EIKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLADPGVNNAFASAT 255
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 129/273 (47%), Gaps = 52/273 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
A+SSPS + G ++ +RK T+ V + P+R L+
Sbjct: 7 ALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKT-----TKPVPSGSPWYGPDRVLYLGPLS 61
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNG 121
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 122 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GP 179
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
TDP+ YPGG FDPLG+ PE EL+ KEIKNGRLAM ++ G
Sbjct: 180 LGEVTDPL------------YPGGS-FDPLGFAD-DPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL HLADP + +A T
Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 132/264 (50%), Gaps = 51/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS G++ ++ +G ++ +RK + +++VS + P+R + F
Sbjct: 7 ALSSPSLAGQAVKLGSSVSNIVGEGRITMRKTASK--SKNVSSGSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 65 GEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 182 PLGEITDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKELKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GPI+NL HLADP
Sbjct: 228 GFFVQAIVTGKGPIENLADHLADP 251
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 103/211 (48%), Gaps = 41/211 (19%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
PG P LDGS PGDFGFDPLGL E+ HCRWAML GI +PE L
Sbjct: 1 MPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 60
Query: 114 KLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
+ W G+ Y T+ ++E + I +AE +R +
Sbjct: 61 LGNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR--------TMEK 112
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DP YPGG FDPLG+ S P K +E + KEIKNGRLAMLA +G Q
Sbjct: 113 DP---------EKKKYPGGA-FDPLGF-SKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQ 161
Query: 226 -IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Y GTGP++NL +HLADP H + P+
Sbjct: 162 SAYPGTGPLENLASHLADPWHNNIGDIIIPR 192
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 129/264 (48%), Gaps = 51/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS T + LG ++ +RK A ++ ++ + P+R + F
Sbjct: 7 ALSSPSFAGKAVKLSPTASETLGEGRITMRK--AAGKSKVATIDSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVTDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 228 GFFVQAIVTGKGPLENLADHLADP 251
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 130/266 (48%), Gaps = 50/266 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP 68
A ++SSP+ ++V + ++ G ++ +RK TA + V+ S+ +R L+
Sbjct: 4 ATMSLSSPAFA-GKAVKNVSLSALFGEARVTMRKT--TAKAKQVASSSPWYGADRVLYLG 60
Query: 69 --GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 61 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADI 157
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG- 179
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM +
Sbjct: 180 -GPLGEIVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFS 224
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GP++NL H+ DP
Sbjct: 225 MFGFFVQAIVTGKGPLENLADHITDP 250
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 129/265 (48%), Gaps = 53/265 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLW---F 67
A+SSPS G T + L ++ +RK TAG ++VS + P+R + F
Sbjct: 7 ALSSPSLAGKAIKLGPTASEILSEGRVTMRK---TAGKPKNVSSGSPWYGPDRVKYLGPF 63
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 64 SGEAP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG-- 180
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 181 GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSM 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADP 251
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 124/247 (50%), Gaps = 56/247 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VSVSA+ + P+R L+ F G PP +L G PGD
Sbjct: 28 AGVHGEARVTMRK----ATTKKVSVSASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 82
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 83 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 142
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 194
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 195 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 235 NLIAHLA 241
NL HLA
Sbjct: 247 NLADHLA 253
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 134/275 (48%), Gaps = 53/275 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLW---F 67
A+SSPS T + LG ++ +RK TAG + VS + P+R + F
Sbjct: 7 ALSSPSFAGQAVKLSPTASDLLGEGRITMRK---TAGKPKPVSSGSPWYGPDRVKYLGPF 63
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 64 SGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 122
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 123 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG-- 180
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 181 GPLGEITDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSM 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 131/274 (47%), Gaps = 54/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + +G ++ +++ TR VS + P+R + F
Sbjct: 7 ALSSPSFAGQAVKLSPSAPELMGNGRISMKRT-----TRPVSSGSPWYGPDRVKYLGPFS 61
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++HCRWAM GA G PELL++
Sbjct: 62 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRN 120
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--G 178
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 179 PLGEVTDPI------------YPGGS-FDPLGLAD-VPEAFAELKVKEIKNGRLAMFSMF 224
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 225 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 131/274 (47%), Gaps = 51/274 (18%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SS S + + G K+ +RK + A + VS S+ PNR + F
Sbjct: 7 ALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKA--KPVSSSSPWYGPNRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ G L+Y + + ++ +++ +G EG R A +
Sbjct: 124 GVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--E 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 228 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 120/254 (47%), Gaps = 53/254 (20%)
Query: 25 AGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLWFPG-----STPPEWL 76
AGA K L KK + + + S +S A P+R ++ P S PE+L
Sbjct: 29 AGAQKIVSLFSKKPAQKPKPSAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYL 88
Query: 77 DGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS- 122
G +PGD+G+DP GL E++H RWAMLGAAG IPE K G P
Sbjct: 89 TGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEA 148
Query: 123 -WYTAGELEYFTDTTTLF------------IVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
W+ G L +T + F I E++ +G AE R II
Sbjct: 149 VWFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVLVGGAEYYR---II----------- 194
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
N L D +PGG FDPLG S P++ L+ KEIKNGRLAM ++ + Q TG
Sbjct: 195 --NGLDLEDKLHPGG-PFDPLGLAS-DPDQAAILKVKEIKNGRLAMFSMFAFFIQAYVTG 250
Query: 230 TGPIDNLIAHLADP 243
GP++NL HL+DP
Sbjct: 251 EGPVENLAKHLSDP 264
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 108/212 (50%), Gaps = 42/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG+ P +LDGS PGDFGFDPLGL E++H RWAML G+ IPE L
Sbjct: 4 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL 63
Query: 113 TKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
++ W G+ Y + + VE I I + E +R +
Sbjct: 64 GYGNWVSAQKWAATPGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQRNGE-------- 115
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+DP YPGG FDPLG+ G+ ++EL+ KEIKNGRLA++A +G Q
Sbjct: 116 SDP---------EKRKYPGGP-FDPLGFSKGA--NLEELKLKEIKNGRLALVAFLGFVVQ 163
Query: 225 HI-YTGTGPIDNLIAHLADPGHATVFAAFTPK 255
+ Y GTGP++NL HLADP H T+ P+
Sbjct: 164 AVAYPGTGPLENLKTHLADPWHNTIAHVLIPR 195
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 124/249 (49%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 31 AGVHGEARVTMRK----ATTKKVSASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 85
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 86 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 145
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 197
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRL M ++ G + Q I TG GPI+
Sbjct: 198 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLTMFSMFGFFVQAIVTGKGPIE 249
Query: 235 NLIAHLADP 243
+L HLADP
Sbjct: 250 DLADHLADP 258
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 124/249 (49%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK+ T+ VSA+ + P+R L+ F G PP +L G PGD
Sbjct: 25 AGVHGESRVTMRKSA----TKKSVVSASPSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 79
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 80 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 139
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 140 IFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 191
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 192 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 243
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 244 NLADHLADP 252
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 127/265 (47%), Gaps = 56/265 (21%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLWF 67
A A+SSP+ +AG G ++ +RK G A R + S + P+R L+
Sbjct: 4 ATMALSSPA------LAGKIGRDVFGEGRITMRKTGGRA--RPTAASGSPWYGPDRVLYL 55
Query: 68 P--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
PP +L G PGD+G+D GL E++HCRWAMLG AG IPE
Sbjct: 56 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEAC 115
Query: 113 TKLGILNTPS--WYTAGEL-------EYFTDTTTL-----FIVEMIFIGWAEGRRWADII 158
K G P W+ G L YF ++ + I E++ +G AE R II
Sbjct: 116 NKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVIAEVVLVGGAEYYR---II 172
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
N L D +PGG FDPLG S P++ L+ KEIKNGRLAM ++
Sbjct: 173 -------------NGLDLEDKLHPGGP-FDPLGLAS-DPDQAALLKVKEIKNGRLAMFSM 217
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
+G + Q TG GP++NL HL+DP
Sbjct: 218 LGFFIQAYVTGEGPVENLAKHLSDP 242
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 109/228 (47%), Gaps = 49/228 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P R LW + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 56 PERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAMLGALG 115
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PELL K G + P W+ AG L+Y + ++I +G
Sbjct: 116 CVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNPGLVHAQSILATLACQVILMGAI 175
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R VN P G D +PGG WFDPL P+ EL+ KEIK
Sbjct: 176 EGFR---------VNGGPAG-----EGLDKLHPGGPWFDPLALAE-DPDAFAELKVKEIK 220
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
NGRLAM ++ G + Q I TG GPI+NL +HLA+PG FA FTP
Sbjct: 221 NGRLAMFSMFGFFVQAIVTGQGPIENLESHLANPGVNNAFAFATKFTP 268
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 124/249 (49%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK+ T+ VSA+ + P+R L+ F G PP +L G PGD
Sbjct: 28 AGVHGESRVTMRKSA----TKKSVVSASPSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 82
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 83 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 142
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 143 IFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 194
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 195 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 247 NLADHLADP 255
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 105/215 (48%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 75 PDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLG 134
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L +T F + E+I +G
Sbjct: 135 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGG 194
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 195 AEYFRI----------------TNGLGFDDKLHPGG-PFDPLGLAK-DPDQAALLKVKEI 236
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 237 KNGRLAMFAMLGFFFQAYVTGEGPVENLAKHLSDP 271
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 118/242 (48%), Gaps = 46/242 (19%)
Query: 24 VAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP-PEWLDGSLPG 82
VA +++FLG A V+ A R LW PG P LDGSLPG
Sbjct: 2 VAALIQSTFLGASVAAAATAAPVAKKTDSRVTCMA---ERKLWAPGLVKAPAHLDGSLPG 58
Query: 83 DFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSW-YTAGE 128
DFG+DPLGL E+++ RWAMLG AG+ PEL+ + L+ W T G+
Sbjct: 59 DFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGMLAPELVGQGTWLSAQDWAVTGGK 118
Query: 129 LEYFTDTT-----TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 183
Y + T+ VE + W E R + DP+ ++ YPG
Sbjct: 119 PTYLGNELPYGFGTVLAVEFFCLSWVEISR--------GLEKDPM---KRI------YPG 161
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
G FDPLG+G KVKELR NGRLAM+A +G W Q I+ G GP+ NL+ HLADP
Sbjct: 162 GA-FDPLGFGKDEVNKVKELR-----NGRLAMVAFVGMWCQGIHVGGGPVSNLMDHLADP 215
Query: 244 GH 245
H
Sbjct: 216 LH 217
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 117/226 (51%), Gaps = 42/226 (18%)
Query: 40 LRKNGATAGTR-SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------- 91
+ ++ AG R S + + + RP+W+PG+T P+ LDG++ GD+GFDPL L
Sbjct: 5 MMRSRVAAGVRPSRATAVRVSASTRPMWYPGATAPKHLDGTMLGDYGFDPLRLGTNPEQL 64
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIF 145
E+ + RWAM AGI +L + P ++ AG +Y DT TL ++E+
Sbjct: 65 KWFREAELTNGRWAMAAVAGILFTDL------VGLPKFWLAGAEKYALDTPTLALIEVAV 118
Query: 146 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 205
EG+R+ DI K TG + G+ FDPLG K +E++
Sbjct: 119 FAVLEGKRY-DIYKK--------------TG-ETGFLSFAPFDPLGM------KSEEMKL 156
Query: 206 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 251
KE+KNGRLAMLA +G Q G GPI+ L H+ADPGH ++ +
Sbjct: 157 KELKNGRLAMLAFVGFCSQAAVRGKGPIECLTDHIADPGHVNIYTS 202
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 121/254 (47%), Gaps = 53/254 (20%)
Query: 25 AGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLWFPG-----STPPEWL 76
AGA K L KK + + S +S A P+R ++ P S PE+L
Sbjct: 28 AGAQKIVSLFSKKPAQKPKPVPVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYL 87
Query: 77 DGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS- 122
G +PGD+G+DP GL E++H RWAMLGAAG IPE K G P
Sbjct: 88 TGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEA 147
Query: 123 -WYTAGEL-------EYFTDTTTL-----FIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
W+ G L YF ++ + I E++ +G AE R II
Sbjct: 148 VWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYR---II----------- 193
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
N L D +PGG FDPLG S P++ L+ KEIKNGRLAM +++ + Q TG
Sbjct: 194 --NGLDLEDKLHPGG-PFDPLGLAS-DPDQAAILKVKEIKNGRLAMFSMLAFFIQAYVTG 249
Query: 230 TGPIDNLIAHLADP 243
GP++NL HL+DP
Sbjct: 250 EGPVENLAKHLSDP 263
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 126/264 (47%), Gaps = 51/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + + LG ++ +RK G + VS + P+R + F
Sbjct: 7 ALSSPSLAGKAVKLAPSASELLGVGRVSMRKTGGR--PKPVSSGSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + ++ +++ +G EG R A
Sbjct: 124 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVIDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 228 GFFVQAIVTGKGPLENLADHLADP 251
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 124/260 (47%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S SS + V ++ G ++ +RK A A + VS + +R L+ P
Sbjct: 9 SSSSFARKMVENIPSSALFGEARVTMRKTAAKA--KQVSSGSPWYGADRVLYLGPLSGEP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEY-----FTDTTTLFIV---EMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y F ++ + +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEVKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL H+ADP
Sbjct: 231 QAIVTGKGPLENLADHIADP 250
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 108/215 (50%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 76 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLG 135
Query: 103 AAGIFIPELLTKLGILNTPS--WYT-------AGELEYF-----TDTTTLFIVEMIFIGW 148
AAG IPE K G P W+ G L YF + I E++ +G
Sbjct: 136 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGG 195
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG + P++ L+ KEI
Sbjct: 196 AEYYR---II-------------NGLNFEDKLHPGG-PFDPLGLAN-DPDQAALLKVKEI 237
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 238 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDP 272
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 120/246 (48%), Gaps = 50/246 (20%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGF 86
A G ++ +RK+ S S S P+R L+ F G PP +L G PGD+G+
Sbjct: 28 AGVHGESRVTMRKSATKKSVASASPSPWYG-PDRVLYLGPFSGE-PPSYLTGEFPGDYGW 85
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 86 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 145
Query: 129 ---LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 EGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI--------- 194
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 195 ---YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
Query: 238 AHLADP 243
HLADP
Sbjct: 250 DHLADP 255
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 107/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 73 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLG 132
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGEL-------EYF-----TDTTTLFIVEMIFIGW 148
AAG IPE K G P W+ G L YF + + E++ +G
Sbjct: 133 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLVGG 192
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG P++ L+ KEI
Sbjct: 193 AEYYR---II-------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQAALLKVKEI 234
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 235 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDP 269
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 129/266 (48%), Gaps = 50/266 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP 68
A ++SSP+ ++V + ++ G ++ +RK TA + V+ S+ +R L+
Sbjct: 4 ATMSLSSPAFA-GKAVKNVSLSALFGEARVTMRKT--TAKAKQVASSSPWYGADRVLYLG 60
Query: 69 --GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 61 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADI 157
+ G+ W+ AG L+Y + + ++ + + +G EG R A
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIAG- 179
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM +
Sbjct: 180 -GPLGEIVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFS 224
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GP++NL H+ DP
Sbjct: 225 MFGFFVQAIVTGKGPLENLADHITDP 250
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 109/217 (50%), Gaps = 54/217 (24%)
Query: 61 PNRPLWFP-----GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 72 PDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 131
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF--------------IVEMIFI 146
AAG IPE K G P W+ G L D TL+ I E++ +
Sbjct: 132 AAGFIIPEAFNKFGANCGPEAVWFKTGAL--LLDGNTLYYFGKNIPINLVLAVIAEVVLV 189
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
G AE R II N L D +PGG FDPLG P++ L+ K
Sbjct: 190 GGAEYYR---II-------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQAAILKVK 231
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
EIKNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 232 EIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSDP 268
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 130/274 (47%), Gaps = 53/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSP+ T G K +RK ++SVS + P+R + F
Sbjct: 7 ALSSPTLAGQAVKLSPTAPEIQGNAKFTMRKTA----SKSVSSGSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 108/215 (50%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 74 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLG 133
Query: 103 AAGIFIPELLTKLGILNTPS--WYT-------AGELEYF-----TDTTTLFIVEMIFIGW 148
AAG IPE K G P W+ G L YF + I E++ +G
Sbjct: 134 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGG 193
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG + P++ L+ KEI
Sbjct: 194 AEYYR---II-------------NGLNFEDKLHPGG-PFDPLGLAN-DPDQAALLKVKEI 235
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 236 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDP 270
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 128/273 (46%), Gaps = 52/273 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
A+SSPS + G ++ +RK T+ V + P+R L+
Sbjct: 7 ALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKT-----TKPVPSGSPWYGPDRVLYLGPLS 61
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNG 121
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 122 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GP 179
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 180 LGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL HLADP + +A T
Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 120/246 (48%), Gaps = 50/246 (20%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGF 86
A G ++ +RK+ S S S P+R L+ F G PP +L G PGD+G+
Sbjct: 28 AGVHGESRVTMRKSATKKSVASASPSPWYG-PDRVLYLGPFSGE-PPSYLTGEFPGDYGW 85
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 86 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 145
Query: 129 ---LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 EGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI--------- 194
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 195 ---YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
Query: 238 AHLADP 243
HLADP
Sbjct: 250 DHLADP 255
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 62 NRPLWFPGSTPPEW---LDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
RP W G P E+ L G PGD+GFD GL EI+HCRWAML A G
Sbjct: 105 ERPRWL-GPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG 163
Query: 106 IFIPELLTKLGILN--TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
+ +PELL +++ P W+ G + DT + I +G I + +
Sbjct: 164 VVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLM 223
Query: 164 ---------NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
+ + P D+ YPGG FDPLG S P ++L+ KEIKNGRLA
Sbjct: 224 VGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGL-SKDPVAFEDLKVKEIKNGRLA 282
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
M+A +G + Q TG GPI NL+ HL+DP H + ++F
Sbjct: 283 MVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSFV 321
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 124/260 (47%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S SS + V ++ G ++ +RK A A + VS + +R L+ P
Sbjct: 9 SSSSFARKMVENIPSSALFGEARVTMRKTAAKA--KQVSSGSPWYGADRVLYLGPLSGEP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEVKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL H+ADP
Sbjct: 231 QAIVTGKGPLENLADHIADP 250
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 118/251 (47%), Gaps = 34/251 (13%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAAD-------PNRPLWF-PGSTP-PEWLDGSLPGDFGF 86
+K++ RK A + + A A +RP W P S P +L G LPGD+GF
Sbjct: 76 RKMEERKTFAVENSSTFKALAGKARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGF 135
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGELEY 131
D GL EI+H RWAML + G IPE+L LG + P W+ G +
Sbjct: 136 DIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKL 195
Query: 132 FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV---------NTDPIFPNNKLTGTDVGYP 182
DT ++ + ++G I + + + + P D+ YP
Sbjct: 196 KGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYP 255
Query: 183 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 242
GG FDPL S PE +EL+ KEIKNGRLAM+A +G + Q TG GP+ NLI H++D
Sbjct: 256 GGALFDPLNL-SNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISD 314
Query: 243 PGHATVFAAFT 253
P H + +
Sbjct: 315 PFHNNLLGSLN 325
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 121/252 (48%), Gaps = 45/252 (17%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G+ G R+ + P + +W+ P
Sbjct: 7 QQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAP-QSIWYGEDRPKYLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PE+L+K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTF 125
Query: 119 NTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG L+Y + + ++ I WA A ++ G V +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----AQVVLMGFVEGYRVGGG 179
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG G
Sbjct: 180 PLGEGLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 232 PIDNLIAHLADP 243
PI+NL H+ADP
Sbjct: 238 PIENLYDHVADP 249
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 127/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G ++ +RK A + VS S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEITGNGRVSMRKTAA----KPVSSSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 107/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 72 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLG 131
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGEL-------EYF-----TDTTTLFIVEMIFIGW 148
AAG IPE K G P W+ G L YF + + E++ +G
Sbjct: 132 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEIVLVGG 191
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG P++ L+ KEI
Sbjct: 192 AEYYR---II-------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQAALLKVKEI 233
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 234 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDP 268
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 132/267 (49%), Gaps = 52/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
+ A+SSP + K+ ++ + + G K+ +RK + A + VS + P+R +
Sbjct: 4 STTALSSPFAGKAVKLS-PSSSEVTGNGKVTMRKTASKA--KPVSSGSPWYGPDRVKYLG 60
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 61 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 180 --GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMF 223
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 224 SMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 119/244 (48%), Gaps = 54/244 (22%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
G +L +RK G +SV+ S+ + P+R L+ F G PP +L G PGD+G+D
Sbjct: 39 GEARLTMRK---ATGKKSVAASSDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDT 94
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG------- 127
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 95 AGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
Query: 128 --------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L + + ++I +G EG R A P TDPI
Sbjct: 155 GLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAG--GPLGEVTDPI----------- 201
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLGW P+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 202 -YPGGN-FDPLGWAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 258
Query: 240 LADP 243
LADP
Sbjct: 259 LADP 262
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 120/251 (47%), Gaps = 45/251 (17%)
Query: 29 KASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------P 73
+++F G LK +RK G+ G R+ + P + +W+ P P
Sbjct: 8 QSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAP-QSIWYGEDRPKYLGPFSEQTP 66
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN 119
+L G PGD+G+D GL E++HCRWAMLGA G PE+L+K G+
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG 126
Query: 120 TPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
W+ AG L+Y + L + I WA +I+ V P+
Sbjct: 127 EAVWFKAGSQIFSEGGLDYLGNPN-LIHAQSILAVWASQVVLMGLIEGYRVGGGPLG--- 182
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP
Sbjct: 183 --EGLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 233 IDNLIAHLADP 243
I+NL H+ADP
Sbjct: 239 IENLFDHVADP 249
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 118/252 (46%), Gaps = 54/252 (21%)
Query: 41 RKNGATAGTRSVSVSAAAAD---PNRPLWF-PGST-PPEWLDGSLPGDFGFDPLG----- 90
+K T T++ +A + P+R W P ST P +L G PGD+G+D G
Sbjct: 19 KKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADP 78
Query: 91 --------LEIVHCRWAMLGAAGIFIPELL-TKLGI-LNTPSWYTAGE-------LEYF- 132
LE++H RWA+LGA GI PELL T G+ P W+ AG L+Y
Sbjct: 79 ETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLG 138
Query: 133 -------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 185
+ V+++ +G EG R P DP++P G
Sbjct: 139 SPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPAGEGLDPLYP-------------GE 183
Query: 186 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
FDPLG P+ EL+ KEIKNGRLAM + G + Q I TG GPI NL HLADPG
Sbjct: 184 SFDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGT 242
Query: 246 ATVFAA---FTP 254
FAA FTP
Sbjct: 243 NNAFAAATKFTP 254
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 128/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G ++ +RK A + V+ S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEITGNGRVSMRKTVA----KPVASSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 106/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 72 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLG 131
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L T F + E++ +G
Sbjct: 132 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINFILAVVAEIVLVGG 191
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG P++ L+ KEI
Sbjct: 192 AEYYR---II-------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQAALLKVKEI 233
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 234 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDP 268
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 131/274 (47%), Gaps = 51/274 (18%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + + + G K +RK A + VS + P+R + F
Sbjct: 7 ALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKA--KPVSSGSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 124 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL+ HLADP + +A T
Sbjct: 228 GFFVQAIVTGKGPLENLVDHLADPVNNNAWAYAT 261
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 119/244 (48%), Gaps = 54/244 (22%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
G +L +RK G +SV+ S+ + P+R L+ F G PP +L G PGD+G+D
Sbjct: 39 GEARLTMRK---ATGKKSVAASSDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDT 94
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG------- 127
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 95 AGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
Query: 128 --------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L + + ++I +G EG R A P TDPI
Sbjct: 155 GLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAG--GPLGEVTDPI----------- 201
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLGW P+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 202 -YPGGN-FDPLGWAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 258
Query: 240 LADP 243
LADP
Sbjct: 259 LADP 262
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 120/244 (49%), Gaps = 54/244 (22%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
G +L +RK G +SV+ S+ + P+R L+ F G PP +L G PGD+G+D
Sbjct: 39 GEARLTMRK---ATGKKSVAASSDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDT 94
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------ 128
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 95 AGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
Query: 129 -LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L+Y + ++I +G EG R A P TDPI
Sbjct: 155 GLDYLGSPNLIHAQSILAILACQVILMGAIEGYRVAG--GPLGEVTDPI----------- 201
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLGW P+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 202 -YPGGN-FDPLGWAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 258
Query: 240 LADP 243
LADP
Sbjct: 259 LADP 262
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 124/257 (48%), Gaps = 44/257 (17%)
Query: 23 SVAGATKASFLGGKKLK-------LRKNGATAGTRSVSVSAAAA------DPNRPLWFP- 68
+ A A ++S L G+ L ++K GA+ ++ + +A P+RP +
Sbjct: 2 ATASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGP 61
Query: 69 -GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
P +L G PGD+G+D GL E++HCRWAMLGA G PELL K
Sbjct: 62 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
G+ W+ AG L+Y + + ++ I WA +I+ V
Sbjct: 122 TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGLIEGYRVGGG 180
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I
Sbjct: 181 PLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 233
Query: 227 YTGTGPIDNLIAHLADP 243
TG GPI+NL HLADP
Sbjct: 234 VTGKGPIENLFDHLADP 250
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 118/244 (48%), Gaps = 54/244 (22%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
G +L +RK G +SV+ S+ + P+R L+ F G PP +L G PGD+G+D
Sbjct: 39 GEARLTMRK---ATGKKSVAASSDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDT 94
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------ 128
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 95 AGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
Query: 129 -LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L+Y + ++I +G EG R A P TDPI+P
Sbjct: 155 GLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAG--GPLGEVTDPIYPGGN------ 206
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
FDPLGW P+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 207 -------FDPLGWAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 258
Query: 240 LADP 243
LADP
Sbjct: 259 LADP 262
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 111/226 (49%), Gaps = 45/226 (19%)
Query: 62 NRPLWFPGSTP---PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
+RP W G P PE+L G PGD+GFD GL EI+HCRWAML A G
Sbjct: 99 DRPRWL-GPVPYDYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALG 157
Query: 106 IFIPELLTKLGILN--TPSWYTAG-------ELEYF----------TDTTTLFIVEMIFI 146
+ +PELL G+++ P W+ G L+Y + I + + +
Sbjct: 158 VVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAICQALLM 217
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
E R+ I + + P D+ YPGG FDPLG S P ++L+ K
Sbjct: 218 VGPEYARYCGI--------EALEPLGIYLPGDINYPGGPLFDPLGL-SKDPVAFEDLKVK 268
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
EIKNGRLAM+A G + Q TG GP+ NL+ HL+DP + + ++F
Sbjct: 269 EIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILSSF 314
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 111/217 (51%), Gaps = 51/217 (23%)
Query: 61 PNRPLWFP-----GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 9 PDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLG 68
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGEL-------EYFTDTTTL-----FIVEMIFIGW 148
AAG +PE K G + P W+ G L +YF T L I E+I +G
Sbjct: 69 AAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVILVGG 128
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG--YPGGLWFDPLGWGSGSPEKVKELRTK 206
AE R N P+ G+D+ +PGG FDPLG P++ L+ K
Sbjct: 129 AEYYR--------STNKSPL-------GSDLDRLHPGGA-FDPLGLAK-DPDQFALLKVK 171
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
EIKNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 172 EIKNGRLAMFSMLGFFVQAYVTGEGPVENLSAHLSDP 208
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 131/274 (47%), Gaps = 53/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + G ++ +RK + T+SVS + P+R + F
Sbjct: 7 ALSSPSFAGKVVKLTPSSPELFGNSRVTMRK----SATKSVSSGSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HL DP + +A T
Sbjct: 226 GFFVQAIVTGKGPLENLADHLTDPVNNNAWAYAT 259
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 52/242 (21%)
Query: 24 VAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGD 83
++GA + F G L + + G+R VS+S+ W PG P +LDGS PGD
Sbjct: 17 LSGAQRTKFFSGHVSSL--STVSNGSR-VSMSSE--------WMPGQPRPAYLDGSSPGD 65
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA--GE 128
FGFDPLGL E++HCRWAML G+ IPE L ++ W G+
Sbjct: 66 FGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALGLGNWVSAQQWAATPGGQ 125
Query: 129 LEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYP 182
Y + + +E + + + E +R +P K YP
Sbjct: 126 ATYLGNPVPWGTLPIILAIEFLAVAFVEAKR----------GEEPDHEKRK-------YP 168
Query: 183 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI-YTGTGPIDNLIAHLA 241
GG FDPLG+ P+K++E + KE+KNGRLA+LA +G Q I Y GTGP++NL +HL+
Sbjct: 169 GGP-FDPLGFAK-DPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHLS 226
Query: 242 DP 243
+P
Sbjct: 227 NP 228
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 111/226 (49%), Gaps = 42/226 (18%)
Query: 40 LRKNGATAG-TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------- 91
L K+ +AG +R + + RP+W+PG+T P LDGS+ GD+GFDPL L
Sbjct: 4 LLKSRVSAGVSRPSRATVRVSASTRPMWYPGATAPAHLDGSMLGDYGFDPLRLGVNKDNL 63
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIF 145
E+ + RWAM GI + + P ++TAG +Y D TL ++E+
Sbjct: 64 KWFREAELTNGRWAMAAVVGILFTD------AVGLPKFWTAGAEKYALDNQTLALIEVAV 117
Query: 146 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 205
EG+R+ K G + G+ FDP+G K +E++
Sbjct: 118 FAVLEGKRYEIYKKTG----------------ETGFLSFAPFDPMGM------KSEEMKL 155
Query: 206 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 251
KE+KNGRLAMLA +G Q G GPI+ L HLADPGH ++ +
Sbjct: 156 KELKNGRLAMLAFLGFCSQAAVYGKGPIETLQLHLADPGHNNIYTS 201
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 124/258 (48%), Gaps = 54/258 (20%)
Query: 28 TKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDF 84
T +G ++ +RK G R VS + P+R + F G PP +L G PGD+
Sbjct: 22 TGNDLMGNGRVTMRKTG-----RQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDY 75
Query: 85 GFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-- 128
G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 76 GWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 135
Query: 129 -----LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 175
L+Y + + ++ +++ +G EG R A P TDP+
Sbjct: 136 FSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGKVTDPL------- 186
Query: 176 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
YPGG FDPLG PE EL+ KEIKNGR AM ++ G + Q I TG GP++N
Sbjct: 187 -----YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRSAMFSMFGFFVQAIVTGKGPLEN 239
Query: 236 LIAHLADPGHATVFAAFT 253
L HLADP + +A T
Sbjct: 240 LADHLADPVNNNAWAYAT 257
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 108/215 (50%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 74 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAMLG 133
Query: 103 AAGIFIPELLTKLGILNTPS--WYT-------AGELEYF-----TDTTTLFIVEMIFIGW 148
AAG IPE K G P W+ G L YF + I E++ +G
Sbjct: 134 AAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGG 193
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG + P++ L+ KEI
Sbjct: 194 AEYYR---II-------------NGLNFEDKLHPGG-PFDPLGLAN-DPDQAALLKVKEI 235
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G +FQ TG GP++NL HL+DP
Sbjct: 236 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDP 270
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 122/262 (46%), Gaps = 35/262 (13%)
Query: 22 RSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPN------RPLWFPGSTP--- 72
+++A ++ L + LK +K A + + D + RP W G P
Sbjct: 84 KAIANSSIGEQLQQRMLKTKKAAQEAAGEAREAQSNVRDESMWYREGRPKWL-GPIPYDY 142
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG--I 117
P+ L G PGD+GFD LGL EI+H RWAML A G+ IPELL + G
Sbjct: 143 PDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDRFGGVQ 202
Query: 118 LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGR---RWADII------KPGCVNTDPI 168
+ P W+ G + DT + + I A+G + +I + +
Sbjct: 203 FSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLGPEYARYCGIEAL 262
Query: 169 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
P DV YPGG FDPLG + ++L+ KE+KNGRLAM+A +G + Q + T
Sbjct: 263 EPLGIFLPGDVNYPGGALFDPLGL-TKDAAAFEDLKVKEMKNGRLAMVAWLGFYVQALVT 321
Query: 229 GTGPIDNLIAHLADPGHATVFA 250
GPIDNL L DP H +FA
Sbjct: 322 QKGPIDNLFDFLEDPLHQNLFA 343
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 132/267 (49%), Gaps = 52/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
+ A+SSP + K+ ++ + + G K+ +RK A + VS + P+R +
Sbjct: 4 STTALSSPFAGKAVKLS-PSSSEVTGNGKVTMRKTANKA--KPVSSGSPWYGPDRVKYLG 60
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 61 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 119
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
+P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 180 --EPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMF 223
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q + TG GP++NL HLADP
Sbjct: 224 SMFGFFVQALVTGKGPLENLADHLADP 250
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 102/205 (49%), Gaps = 25/205 (12%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P L G PGD+GFD GL EI+HCRWAML A G+ +PELL G+++
Sbjct: 42 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVH 101
Query: 120 --TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV---------NTDPI 168
P W+ G + DT + I +G I + + + +
Sbjct: 102 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEAL 161
Query: 169 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
P D+ YPGG FDPLG S P ++L+ KEIKNGRLAM+A +G + Q T
Sbjct: 162 EPLGLYLPGDINYPGGALFDPLGL-SKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVT 220
Query: 229 GTGPIDNLIAHLADPGHATVFAAFT 253
G GPI NL+ HL+DP H + ++F
Sbjct: 221 GKGPIQNLVEHLSDPLHNNILSSFV 245
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 124/249 (49%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VSV A+ + P+R L+ F G PP +L G PGD
Sbjct: 28 AGVHGEARVTMRK----ATTKKVSVPASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 82
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 83 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 142
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLREVTDPI------ 194
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 195 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 247 NLADHLADP 255
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 125/262 (47%), Gaps = 43/262 (16%)
Query: 13 ISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP 72
+++ S+ +S S+AG T L ++ +L K TA R + P +W+ P
Sbjct: 1 MATASAIQSSSLAGQT---LLRPQQNELVKKVGTAQARITMRRTVRSAPES-IWYGPDRP 56
Query: 73 ----------PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
P +L G PGD+G+D GL E++HCRWAMLGA G P
Sbjct: 57 KYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFP 116
Query: 110 ELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
ELL K G+ W+ AG L+Y + + ++ I WA +I+
Sbjct: 117 ELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WACQVVLMGLIEGY 175
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
V P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 176 RVGGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGF 228
Query: 222 WFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GPI+NL HLADP
Sbjct: 229 FVQAIVTGKGPIENLYDHLADP 250
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 108/220 (49%), Gaps = 45/220 (20%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
++ L + G R+V + A RP W PG +PP L GSL GD GFDPLGL
Sbjct: 7 QVALGRRAPVRGQRAVCAATA-----RPTWLPGLSPPAHLKGSLAGDSGFDPLGLGQDEG 61
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEM 143
E + RWAM+ GI EL LG+ TPSWY AG EY +T L +E
Sbjct: 62 RLKWYAEAEKTNGRWAMMAVTGILGQEL---LGV--TPSWYEAGAKEYDIPSTPLTAIEF 116
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
I +G+ E +R+ K TGT G+ FDP G S S +
Sbjct: 117 IVMGFLEIKRYQGF---------------KTTGTS-GFINSFPFDPAGLNSAS------M 154
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
TKE+KNGRLAM+A +G Q + T T PI+ L HL+DP
Sbjct: 155 ATKEVKNGRLAMVAFVGFAVQALVTRTQPIEGLTKHLSDP 194
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 133/275 (48%), Gaps = 53/275 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLW---F 67
A+SSPS + + LG ++ +RK TAG + VS + P+R + F
Sbjct: 7 ALSSPSLAGQAIKLAPSSSDLLGEGRVTMRK---TAGRPKPVSSGSPWYGPDRVKYLGPF 63
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 64 SGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 122
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-- 180
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 181 GPLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSM 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 134/279 (48%), Gaps = 62/279 (22%)
Query: 1 MASVCASPAVAAISS--PSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
+ S CA A A +SS P + + V GA G +L +RK G +SV+ S +
Sbjct: 10 IGSRCAF-AGAQLSSVKPQNNQLLGVGGAH-----GEARLTMRK---ATGKKSVAASIDS 60
Query: 59 --ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAM 100
P+R L+ F G PP +L G PGD+G+D GL E++H RWAM
Sbjct: 61 PWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 119
Query: 101 LGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMI 144
LGA G PELL + G+ W+ AG +L + ++ ++I
Sbjct: 120 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVI 179
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+G EG R A P TDPI YPGG FDPLG P+ EL+
Sbjct: 180 LMGAIEGYRVAG--GPLGEVTDPI------------YPGGN-FDPLGLAD-DPDAFAELK 223
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KEIKNGRLAM ++ G + Q I TG GPI+NL HLADP
Sbjct: 224 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 262
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 122/260 (46%), Gaps = 61/260 (23%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G G R + P + +W+ P
Sbjct: 7 QRSAFAGQTALKQPNELVRKVGGLGGGRITMRRTVKSTP-QSIWYGPDRPKYLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PE+L+K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ +++ +G+ EG R V
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------V 176
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
P+ G D YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G +
Sbjct: 177 GGGPLG-----EGLDAIYPGGA-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GPI+NL+ HLADP
Sbjct: 230 QAIVTGKGPIENLVDHLADP 249
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 134/274 (48%), Gaps = 54/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS +++ + L G ++ +RK A ++SVS + P+R + F
Sbjct: 7 ALSSPS-LAGQAIKLSPSTPELSGGRISMRK----AASKSVSSGSPWYGPDRVKYLGPFS 61
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 62 GEAP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--G 178
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 179 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSIF 224
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 225 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 133/280 (47%), Gaps = 60/280 (21%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSP+ + +G ++ +RK T+ VS + P+R +
Sbjct: 4 ATMALSSPAFAGKAVKLSPSSPELMGNGRVSMRKT-----TKPVSSGSPWYGPDRVKYLG 58
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G PP +L G PGD+G+D GL E++H RWAMLGA G PELL
Sbjct: 59 PFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 117
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
++ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 118 SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 177
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM
Sbjct: 178 --GPLGEITDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMF 221
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP------GHATVFA 250
++ G + Q I TG GP++NL HLADP +AT FA
Sbjct: 222 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFA 261
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 106/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P + PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 147
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L T + F + E+I +G
Sbjct: 148 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIHINLIAAVVAEVILVGG 207
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 208 AEYYR----------------ATNGLDFEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 249
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 250 KNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDP 284
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 111/229 (48%), Gaps = 50/229 (21%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P RPL+ T PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 37 PERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG 96
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL G+ W+ AG L+Y ++ + +++ +G
Sbjct: 97 CIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQVLLMGAI 156
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R VN P+ G D YPGG FDPLG P+ EL+ KEIK
Sbjct: 157 EGYR---------VNGGPLG-----EGLDKLYPGG-SFDPLGLAD-DPDTFSELKVKEIK 200
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTPK 255
NGRLAM ++ G + Q I TG GP+ NL HLA+PG FA FTP+
Sbjct: 201 NGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTPQ 249
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 103/212 (48%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGS PGDFGFDPL L E++HCRWAML G+ +PE L
Sbjct: 5 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL 64
Query: 113 TKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I + E +R
Sbjct: 65 GLGNWVQAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR----------- 113
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+ + YPGG FDPLG+ S P K +E + KEIKNGRLA+LA +G Q
Sbjct: 114 ------SMEKDTEKKKYPGGA-FDPLGY-SKDPVKFEEYKVKEIKNGRLAILAFVGFCVQ 165
Query: 225 H-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Y GTGP++NL +HLADP H + P+
Sbjct: 166 QSAYPGTGPLENLASHLADPWHNNIGDVIIPR 197
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 127/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + G ++ +RK A + V+ S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVA----KPVASSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 128/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G ++ +RK A +S S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEISGNGRITMRK----AVAKSAPSSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
++ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 132/277 (47%), Gaps = 51/277 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A ++SSPS + +G K+ +RK A + VS + P+R +
Sbjct: 4 ATMSLSSPSFAGKAVKLSPSSYEIIGNGKVTMRKTVIKA--KPVSSGSPWYGPDRVKYLG 61
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G++P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 62 PFSGNSP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 181 --GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 106/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P + PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 147
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L T + F + E+I +G
Sbjct: 148 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGG 207
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 208 AEYYR----------------ATNGLDFEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 249
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 250 KNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDP 284
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 124/249 (49%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK + T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 31 AGVHGEARVTMRK----SSTKKVSASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 85
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 86 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 145
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEITDPI------ 197
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI+
Sbjct: 198 ------YPGGS-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 250 NLADHLADP 258
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 106/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P + PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAMLG 147
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L T + F + E+I +G
Sbjct: 148 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGG 207
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 208 AEYYR----------------ATNGLDFEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 249
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 250 KNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDP 284
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 129/274 (47%), Gaps = 53/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSP+ G K +RK ++SVS + P+R + F
Sbjct: 7 ALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTA----SKSVSSGSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 108/230 (46%), Gaps = 51/230 (22%)
Query: 65 LWFPGSTP----------PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAML 101
W+ G+ P PE L G PGD+GFD GL EI+HCRWAML
Sbjct: 89 FWYGGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAML 148
Query: 102 GAAGIFIPELLTKLGILN--TPSWYTAGELEYFTDT-----------------TTLFIVE 142
A G+ +PELL GI++ P W+ G + DT + I +
Sbjct: 149 AALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQ 208
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 202
++ + E R+ I + + P D+ YPGG FDPLG S P +E
Sbjct: 209 VLLMVGPEYARYCGI--------EALEPLGIYLPGDINYPGGALFDPLGL-SKDPVAFEE 259
Query: 203 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+ KEIKNGRLAM+A +G + Q TG GP+ NL HL+DP H + + F
Sbjct: 260 FKVKEIKNGRLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNNILSPF 309
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 113/237 (47%), Gaps = 56/237 (23%)
Query: 44 GATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------ 91
G G+R VS+SA W PG P LDGS PGDFGFDPLGL
Sbjct: 37 GVCNGSR-VSMSAE--------WMPGQPRPAHLDGSAPGDFGFDPLGLGVVPENLERYKE 87
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT--AGELE---------YFTDTTTLF 139
E++HCRWAML G+ IPE L + W G+ YF ++F
Sbjct: 88 SELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGGQATYLGVPVPWGYFPIILSIF 147
Query: 140 IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK 199
++M F AE +R N +P K YPGG FDPLG+ S P K
Sbjct: 148 FLKMAF---AESQR----------NGEPDLEKRK-------YPGGA-FDPLGF-SKDPAK 185
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQ-HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
+E + KEIKNGRLA+LA +G Q GTGP++NL HL+DP H + P+
Sbjct: 186 FEEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEIIIPR 242
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 130/268 (48%), Gaps = 54/268 (20%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSA-AAADPNRPLWF 67
A A+SSP ++ A +T ++ G ++ +RK A + S S AD R L+
Sbjct: 4 ATMALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGAD--RVLYL 58
Query: 68 ---PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
G PP +L G PGD+G+D GL E++H RWAMLGA G PEL
Sbjct: 59 GPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 112 LTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 155
L + G+ W+ AG L+Y + + ++ V+++ +G EG R A
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 178
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
P DP+ YPGG FDPLG PE EL+ K+IKNGRLAM
Sbjct: 179 G--GPLGEVVDPL------------YPGGA-FDPLGLAD-DPEACAELKVKKIKNGRLAM 222
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 FSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 127/263 (48%), Gaps = 50/263 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
++SSP+ ++V +S G ++ +RK A + V+ + +R L+
Sbjct: 7 SLSSPAFA-GKAVKNLPSSSLFGEARVTMRKTAAK--VKQVASGSPWYGSDRVLYLGPLS 63
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G
Sbjct: 64 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 123
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 124 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GP 181
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 182 LGEIVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 221 AWFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL HL+DP
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDP 250
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 122/253 (48%), Gaps = 49/253 (19%)
Query: 22 RSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGS 79
++V ++ G ++ +RK TA + VS S+ +R L+ PP +L G
Sbjct: 16 KAVKNVPLSTLFGEARVTMRKT--TAKAKQVSSSSPWYGADRVLYLGPLSGEPPSYLTGE 73
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYT 125
PGD+G+D GL E++HCRWAMLGA G PELL + G+ W+
Sbjct: 74 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFGEAVWFK 133
Query: 126 AGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
AG L+Y + + ++ +++ +G EG R A P DP+
Sbjct: 134 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEIVDPL-- 189
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 190 ----------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 231 GPIDNLIAHLADP 243
GP++NL H+ DP
Sbjct: 238 GPLENLADHIVDP 250
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 128/268 (47%), Gaps = 57/268 (21%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSA-AAADPNRPLWF 67
A A+SSP+ +AG A G ++ +RK+ A + S S AD R L+
Sbjct: 4 ATMALSSPA------LAGKAAAKVFGEGRITMRKSAAKPKPAASSGSPWYGAD--RVLYL 55
Query: 68 ---PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
G PP +L G PGD+G+D GL E++H RWAMLG G PEL
Sbjct: 56 GPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPEL 115
Query: 112 LTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 155
L + G+ W+ AG L+Y + + ++ V+++ +G EG R A
Sbjct: 116 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 175
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 176 G--GPLGEVVDPL------------YPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAM 219
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 220 FSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 126/264 (47%), Gaps = 53/264 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + + G ++ +RK A + V+ S+ P+R + F
Sbjct: 7 ALSSPSFAGQAVKLSPSASEITGNGRVSMRKTVA----KPVASSSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 63 GEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 180 PLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADP 249
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 129/274 (47%), Gaps = 53/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSP+ G K +RK ++SVS + P+R + F
Sbjct: 7 ALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTA----SKSVSSGSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 120/244 (49%), Gaps = 54/244 (22%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
G +L +R+ G +SV+ S+ + P+R L+ F G PP +L G PGD+G+D
Sbjct: 39 GEARLTMRE---ATGKKSVAASSDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDT 94
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------ 128
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 95 AGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
Query: 129 -LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L+Y + ++I +G EG R A P TDPI
Sbjct: 155 GLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAG--GPLGEVTDPI----------- 201
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLGW P+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 202 -YPGGN-FDPLGWAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 258
Query: 240 LADP 243
LADP
Sbjct: 259 LADP 262
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 124/264 (46%), Gaps = 51/264 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP 68
A A+SSP+ +AG A G ++ +RK+ A + AD L
Sbjct: 4 ATMALSSPA------LAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPL 57
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
PP +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 58 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ V+++ +G EG R A
Sbjct: 118 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--G 175
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 176 PLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 221
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 222 GFFVQAIVTGKGPLENLADHLADP 245
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 127/265 (47%), Gaps = 49/265 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSA-AAADPNRPLWF 67
A A+SSP ++ A +T ++ G ++ +RK A + S S AD L
Sbjct: 4 ATMALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PP +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 120
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ V+++ +G EG R A
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG-- 178
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 179 GPLGEVVDPL------------YPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSM 224
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADP 249
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 127/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G ++ +RK A +S S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEISGNGRITMRK----AVAKSAPSSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 124/260 (47%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S S+ ++V ++ G ++ +RK TA + VS + +R L+ P
Sbjct: 9 SSSTFAGKAVKNVPSSALFGEARVTMRKT--TAKAKQVSSGSPWYGADRVLYLGPLSGEP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL H+ DP
Sbjct: 231 QAIVTGKGPLENLGDHITDP 250
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 127/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G ++ +RK A +S S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEISGNGRITMRK----AVAKSAPSSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 113/221 (51%), Gaps = 35/221 (15%)
Query: 64 PLWFPGSTPPE--WLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGA 103
PL+ G++ +LDGSLPGD+GFDPLGL E++H RWAMLG
Sbjct: 48 PLYVLGNSEQSLSYLDGSLPGDYGFDPLGLSDPEGAGGFVNPKWLAYSELIHGRWAMLGV 107
Query: 104 AGIFIPELLTKLGILNTPS---WYTAGEL------EYFTDTTTLFIVEMIFIGWAEGRRW 154
AG+ PE+L +GI+ + W+ AG + +Y+ T+F + + AE RR
Sbjct: 108 AGMVAPEVLGGMGIIPQETGLVWFKAGMIPAQGTYDYWASPFTIFWINAFLMNIAELRRA 167
Query: 155 ADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
D PG + K+ G D YPGG +F+ + G + + ++TKEIKNGR
Sbjct: 168 QDYWNPGSMGKQDFAGLEKMLGGSGDPAYPGG-FFNFMKQGE---KDMAAMKTKEIKNGR 223
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
LAM+A G Q TG GP+ NL+ H+ DP + F+
Sbjct: 224 LAMMACFGCGAQACMTGEGPVKNLVDHVIDPFGHNLLVNFS 264
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 126/263 (47%), Gaps = 51/263 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
A+SSP+ ++V ++ G ++ +RK GA S S P+R L+
Sbjct: 7 ALSSPAF-AGKAVKNVPSSALFGEARVTMRKTGAKPKATSGS---PWYGPDRVLYLGPLS 62
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G
Sbjct: 63 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 122
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 123 VQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GP 180
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G
Sbjct: 181 LGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFG 226
Query: 221 AWFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GPI+NL HLADP
Sbjct: 227 FFVQAIVTGNGPIENLADHLADP 249
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 125/249 (50%), Gaps = 55/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK ++ T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 31 AGVHGEARVTMRK---SSTTKKVSASASPSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 86
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 87 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 146
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 147 IFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEITDPI------ 198
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI+
Sbjct: 199 ------YPGGS-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 250
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 251 NLADHLADP 259
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 132/271 (48%), Gaps = 53/271 (19%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGST 71
S SS +++ A LG ++ +RK +++VS + P+R + F G
Sbjct: 9 SSSSLAGQAIKLAPSTPELGVGRVSMRKTA----SKTVSSGSPWYGPDRVKYLGPFSGE- 63
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 123
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLG 181
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 182 EVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFF 227
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
Q I TG GP++NL HLADP + +A T
Sbjct: 228 VQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 127/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G ++ +RK A +S S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEISGNGRITMRK----AVAKSAPSSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 133/280 (47%), Gaps = 60/280 (21%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + +G ++ +RK T+ V + P+R +
Sbjct: 4 ATMALSSPSLAGKAVKLNPSSSEIMGNGRVSMRKT-----TKPVPSGSPWYGPDRVKYLG 58
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G PP +L G PGD+G+D GL E++H RWAMLGA G PELL
Sbjct: 59 PFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 117
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
++ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 118 SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 177
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM
Sbjct: 178 --GPLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMF 221
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP------GHATVFA 250
++ G + Q I TG GP++NL HL+DP +AT FA
Sbjct: 222 SMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFA 261
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 130/264 (49%), Gaps = 54/264 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS ++V A L ++ +RK + +R+VS + P+R + F
Sbjct: 7 ALSSPS-LAGKAVKLAPSTPELNVGRVSMRK----SASRNVSSGSPWYGPDRVKYLGPFS 61
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 62 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--G 178
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 179 PLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 224
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GPI+NL HLADP
Sbjct: 225 GFFVQAIVTGKGPIENLADHLADP 248
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 132/277 (47%), Gaps = 54/277 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + +G ++ +RK T+ V + P+R +
Sbjct: 4 ATMALSSPSLAGKAVKLNPSSSEIMGNGRVSMRKT-----TKPVPSGSPWYGPDRVKYLG 58
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G PP +L G PGD+G+D GL E++H RWAMLGA G PELL
Sbjct: 59 PFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 117
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
++ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 118 SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 177
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM
Sbjct: 178 --GPLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMF 221
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
++ G + Q I TG GP++NL HL+DP + +A T
Sbjct: 222 SMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYAT 258
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 106/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P + PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 63 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 122
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L T + F + E+I +G
Sbjct: 123 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGG 182
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 183 AEYYR----------------ATNGLDFEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 224
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 225 KNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDP 259
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 119/239 (49%), Gaps = 52/239 (21%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-- 91
++ +RK TAG + S + P+R + F G PP +L G PGD+G+D GL
Sbjct: 33 RVTMRK---TAGKPAASSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSA 88
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYF 132
E++HCRWAMLGA G PELL + G+ W+ AG L+Y
Sbjct: 89 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 148
Query: 133 TDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
+ + ++ +++ +G EG R A P TDP+ YPGG
Sbjct: 149 GNPSLIHAQSILAIWATQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGG 194
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 195 S-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 121/248 (48%), Gaps = 51/248 (20%)
Query: 28 TKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDF 84
+ + G K+ +RK + A + VS + P+R + F G +P +L G PGD+
Sbjct: 22 SSSEITGNGKVTMRKTASKA--KPVSSGSLWYGPDRVKYLGPFSGESP-SYLTGEFPGDY 78
Query: 85 GFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-- 128
G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 79 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 138
Query: 129 -----LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 175
L+Y + + ++ ++I +G EG R A P DP+
Sbjct: 139 FSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGEVVDPL------- 189
Query: 176 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++N
Sbjct: 190 -----YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 236 LIAHLADP 243
L HLADP
Sbjct: 243 LADHLADP 250
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 125/260 (48%), Gaps = 56/260 (21%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFD 87
G K L +R+ T R +V AA + P+R + F + PE+L G PGD+G+D
Sbjct: 9 GLKALNIRQ---TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWD 65
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG--ILNTPSWYTAGE---- 128
GL E++H RWA+LGA GI PELL++ P W+ AG
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 129 ---LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L Y + + + V+++ +G AE R A+ G ++
Sbjct: 126 AGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGFLDD-----------L 173
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D YPGG FDPLG P+ EL+ KEIKNGRLAM + +G + Q I TG GP+ NL
Sbjct: 174 DTLYPGG-PFDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLT 231
Query: 238 AHLADPGHATVFAA---FTP 254
HLADP FA+ FTP
Sbjct: 232 DHLADPTVNNAFASATKFTP 251
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 107/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S P +L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 64 PDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLG 123
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L +T F I E++ +G
Sbjct: 124 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVIAEVVLLGG 183
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG S P++ L+ KEI
Sbjct: 184 AEYYR---II-------------NGLDLEDKLHPGG-PFDPLGLAS-DPDQAAILKAKEI 225
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 226 KNGRLAMFAMLGFFLQAYVTGEGPVENLSKHLSDP 260
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 102/212 (48%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P +LDGS PGDFGFDPL L E++HC WAML GI +PE L
Sbjct: 44 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEAL 103
Query: 113 TKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 104 GLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR--------SMG 155
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P+ E + KE+KNGRLA+LA +G Q
Sbjct: 156 KDP---------EKKKYPGGA-FDPLGY-SKDPKTFHEYKVKELKNGRLALLAFVGFCVQ 204
Query: 225 H-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Y GTGP++NL AHLADP H + P+
Sbjct: 205 QSAYPGTGPLENLAAHLADPWHNNIGNIIIPQ 236
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 130/264 (49%), Gaps = 52/264 (19%)
Query: 12 AISSPS-SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSA--AAADPNRPLWFP 68
A+SSPS + K+ + + + LG ++ +RK A + VS + AD + L
Sbjct: 6 ALSSPSLAGKAVKLGPSAASELLGNGRISMRKTIA----KPVSSGSPWYGADRVKYLGPF 61
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y +++ ++ +++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVEGYRIAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 180 PLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL LADP
Sbjct: 226 GFFVQAIVTGKGPLENLADPLADP 249
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 124/249 (49%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK + T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 31 AGVHGEARVTMRK----SSTKKVSASASPSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 85
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 86 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 145
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 IFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEITDPI------ 197
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI+
Sbjct: 198 ------YPGGS-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 250 NLADHLADP 258
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 125/260 (48%), Gaps = 56/260 (21%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFD 87
G K L +R+ T R +V AA + P+R + F + PE+L G PGD+G+D
Sbjct: 9 GLKALNIRQ---TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWD 65
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG--ILNTPSWYTAGE---- 128
GL E++H RWA+LGA GI PELL++ P W+ AG
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 129 ---LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L Y + + + V+++ +G AE R A+ G ++
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGFLDD-----------L 173
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D YPGG FDPLG P+ EL+ KEIKNGRLAM + +G + Q I TG GP+ NL
Sbjct: 174 DTLYPGG-PFDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLT 231
Query: 238 AHLADPGHATVFAA---FTP 254
HLADP FA+ FTP
Sbjct: 232 DHLADPTVNNAFASATKFTP 251
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 123/260 (47%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S S+ ++V ++ G ++ +RK A A + VS S+ +R L+ P
Sbjct: 9 SSSTFAGKAVKNVPLSALFGEARVTMRKTAAKA--KQVSSSSPWYGADRVLYLGPLSREP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP++P + FDPLG P+ L+ KEIKNGRLAM ++ G
Sbjct: 185 IVDPLYPGGR-------------FDPLGLAE-RPQAFDALKVKEIKNGRLAMFSMFGFLV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL H+ADP
Sbjct: 231 QAIVTGKGPLENLADHIADP 250
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 125/256 (48%), Gaps = 52/256 (20%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLWF-PGSTPPEWLDGSLPGDFGF 86
+FLG L K T+G + V+ AA + PNR + P + P +L+G PGD+G+
Sbjct: 9 TFLGAS---LAKAVPTSGKGTKQVTRAAIEFYGPNRAGYLGPFTKSPSYLNGEYPGDYGW 65
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++H RWAMLGA G PELL K G+ W+ AG
Sbjct: 66 DTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWWKAGSQIFA 125
Query: 129 ---LEYFTDTTTLF---IVEMIF-----IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L+Y + + + I+ ++F +G EG R VN P G
Sbjct: 126 PGGLDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYR---------VNGGP-----AGEGL 171
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D YPG FDPLG P+ ELR KEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 172 DALYPGEA-FDPLGLAD-DPDTFAELRVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 229
Query: 238 AHLADPGHATVFAAFT 253
HLA+P FAA T
Sbjct: 230 DHLANPSVNNGFAAAT 245
>gi|149242542|pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 12/161 (7%)
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVE 142
EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+ D TLF++E
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLE 65
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPEKV 200
M +G+AE RR D PG + K L G+ + YPGG +F+PLG+G + +
Sbjct: 66 MALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGK-DEKSL 124
Query: 201 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLA
Sbjct: 125 KELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 113/229 (49%), Gaps = 50/229 (21%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P RPL+ T PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 44 PERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG 103
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD------TTTLFIV--EMIFIGWA 149
PELL G+ W+ AG L+Y + + L I+ +++ +G
Sbjct: 104 CIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAI 163
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R VN P+ G D YPGG FDPLG P+ EL+ KEIK
Sbjct: 164 EGYR---------VNGGPLG-----EGLDKLYPGG-SFDPLGLAD-DPDTFAELKVKEIK 207
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTPK 255
NGRLAM ++ G + Q I TG GP+ NL HLA+PG FA FTP+
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTPQ 256
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 107/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S P +L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 75 PDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 134
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L +T F + E++ +G
Sbjct: 135 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVLVGG 194
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R II N L D +PGG FDPLG + P++ L+ KEI
Sbjct: 195 AEYYR---II-------------NGLDLEDKLHPGG-PFDPLGLAN-DPDQAALLKVKEI 236
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM A++G + Q TG GP++NL AHL+DP
Sbjct: 237 KNGRLAMFAMLGFFIQAYVTGEGPVENLAAHLSDP 271
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 113/228 (49%), Gaps = 52/228 (22%)
Query: 62 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
+RPL+ F GS PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL K G+ W+ AG L+Y + + ++ ++I +G
Sbjct: 112 CVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DPI YPGG FDPLG PE EL+ KE+K
Sbjct: 172 EGYRVAG--GPLGEVEDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
NGRLAM ++ G + Q I TG GPI+NL HLADP +A FTP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTP 263
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 106/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P + PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 88 PDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLG 147
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG +PE K G P W+ G L T + F + E+I +G
Sbjct: 148 AAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGG 207
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 208 AEYYR----------------ATNGLDFEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 249
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 250 KNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDP 284
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 121/252 (48%), Gaps = 45/252 (17%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G+ G R V++ + +W+ P
Sbjct: 7 QQSAFAGQTALKSQNEFIRKIGSFEGGR-VTMRRTVKSAPQSIWYGEDRPKYLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PE+L+K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSKNGVTF 125
Query: 119 NTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG L+Y + + ++ I WA + ++ G V +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----SQVVLMGFVEGYRVGGG 179
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG G
Sbjct: 180 PLGEGLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 232 PIDNLIAHLADP 243
PI+NL H+ADP
Sbjct: 238 PIENLSDHIADP 249
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 118/242 (48%), Gaps = 49/242 (20%)
Query: 33 LGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLG 90
LG ++ +RK A A + VS + +R L+ PP +L G PGD+G+D G
Sbjct: 24 LGEARITMRKTVAKA--KPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAG 81
Query: 91 L-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------L 129
L E++HCRWAMLGA G PELL + G+ W+ AG L
Sbjct: 82 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGL 141
Query: 130 EYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 181
+Y + + ++ +++ +G EG R A P DP+ Y
Sbjct: 142 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEIVDPL------------Y 187
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLA
Sbjct: 188 PGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 245
Query: 242 DP 243
DP
Sbjct: 246 DP 247
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 127/261 (48%), Gaps = 53/261 (20%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGST 71
S SS +++ A LG ++ +RK +++VS + P+R + F G
Sbjct: 9 SSSSLAGQAIKLAPSTPQLGVGRVSMRKTA----SKTVSSGSPWYGPDRVKYLGPFSGE- 63
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 123
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLG 181
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 182 EVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFF 227
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 228 VQAIVTGKGPLENLADHLADP 248
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 126/264 (47%), Gaps = 51/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SS S + + G K+ +RK + A + VS + P+R + F
Sbjct: 7 ALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKA--KPVSSGSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 124 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 228 GFFVQAIVTGKGPLENLADHLADP 251
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 118/244 (48%), Gaps = 54/244 (22%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
G +L +RK G +SV+ S+ + P+R L+ F G P +L G PGD+G+D
Sbjct: 39 GEARLTMRK---ATGKKSVAASSDSPWYGPDRVLYLGPFSGEQP-SYLTGEFPGDYGWDT 94
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG------- 127
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 95 AGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
Query: 128 --------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L + + ++I +G EG R A P TDPI
Sbjct: 155 GLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVAG--GPLGEVTDPI----------- 201
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLGW P+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 202 -YPGGN-FDPLGWAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 258
Query: 240 LADP 243
LADP
Sbjct: 259 LADP 262
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 103/206 (50%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++HCRWAMLGA G
Sbjct: 53 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 112
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PELL K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 113 CVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGL 171
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
I+ V P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM +
Sbjct: 172 IEGYRVGGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPESFAELKVKEIKNGRLAMFS 224
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL HLADP
Sbjct: 225 MFGFFVQAIVTGKGPIENLYDHLADP 250
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 126/264 (47%), Gaps = 53/264 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + G ++ +RK A + V+ S+ P+R + F
Sbjct: 7 ALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVA----KPVASSSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 63 GESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 180 PLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADP 249
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 125/260 (48%), Gaps = 56/260 (21%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFD 87
G K L +R+ T R +V AA + P+R + F + PE+L G PGD+G+D
Sbjct: 9 GLKALNIRQ---TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWD 65
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG--ILNTPSWYTAGE---- 128
GL E++H RWA+LGA GI PELL++ P W+ AG
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 129 ---LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L Y + + + V+++ +G AE R A+ G ++
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGFLDD-----------L 173
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D YPGG FDPLG P+ EL+ KEIKNGRLAM + +G + Q I TG GP+ NL
Sbjct: 174 DTLYPGG-PFDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLT 231
Query: 238 AHLADPGHATVFAA---FTP 254
HLADP FA+ FTP
Sbjct: 232 DHLADPTVNKAFASATKFTP 251
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 127/264 (48%), Gaps = 51/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSP+ + + +G ++ +RK+ ++VS + P+R + F
Sbjct: 7 ALSSPAFGGKAVKLNPSTSDMIGEGRISMRKSAGK--PKNVSSGSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GEAP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 124 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 228 GFFVQAIVTGKGPLENLADHLADP 251
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 111/228 (48%), Gaps = 50/228 (21%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RPL+ T PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 44 PDRPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG 103
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL G+ W+ AG L+Y + + + ++I +G
Sbjct: 104 CIFPELLGSYGVPFGESVWFKAGAQIFQEGGLDYLGNPSLVHAQSILAILGTQVILMGAI 163
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R VN P+ G D YPGG FDPLG P+ EL+ KEIK
Sbjct: 164 EGYR---------VNGGPLG-----EGLDKLYPGG-SFDPLGLAD-DPDTFAELKVKEIK 207
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
NGRLAM ++ G + Q I TG GP+ NL HLA+PG FA FTP
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNNAFAYATKFTP 255
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 128/269 (47%), Gaps = 59/269 (21%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD----------PNRPLW---FPGSTPP 73
A +S L G+ +KL + G VS+ A+ P+R + F G PP
Sbjct: 7 ALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTASKTVTSGSPWYGPDRVKYLGPFSGE-PP 65
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN 119
+L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 125
Query: 120 TPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 126 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEV 183
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q
Sbjct: 184 TDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQ 229
Query: 225 HIYTGTGPIDNLIAHLADPGHATVFAAFT 253
I TG GP++NL HLADP + +A T
Sbjct: 230 AIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 130/274 (47%), Gaps = 53/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + + G ++ +RK A +S S+ P+R + F
Sbjct: 7 ALSSPSFAGQAVKLSPSTSEITGNGRITMRK----AVAKSAPSSSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 63 GESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 180 PLGEVIDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 101/194 (52%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG L+Y + + + ++ I WA +I G V +
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVAG 178
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
L D+ YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 179 EGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 237 KGPLENLADHLADP 250
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 101/194 (52%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG L+Y + + + ++ I WA +I G V +
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVAG 178
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
L D+ YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 179 EGPLGEAEDLLYPGGS-FDPLGLAA-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 237 KGPLENLADHLADP 250
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 107/223 (47%), Gaps = 50/223 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 41 PSRPKFLGPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAMLGAL 100
Query: 105 GIFIPELLTKLGILNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWA 149
G +PELL N +W+ AG L+Y IV++I + +
Sbjct: 101 GCVVPELLDGT---NHIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVILMSYV 157
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R VN P TG D YPGG FDPLG P+ EL+ KEIK
Sbjct: 158 EGYR---------VNGGP-----AGTGLDAVYPGG-SFDPLGLAD-DPDTFSELKVKEIK 201
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
NGRLAML++ G + Q I TG GPI+NL HLAD ++ +
Sbjct: 202 NGRLAMLSMFGFFIQAIVTGEGPIENLNKHLADASANNFYSLY 244
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 120/260 (46%), Gaps = 61/260 (23%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G+ G R + P + +W+ P
Sbjct: 7 QQSAFAGQTALKPSNELVRKVGSVGGGRITMRRTVKSAP-QSIWYGPDRPKYLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PE+L K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ +++ +G+ EG R P
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DPI YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 184 GLDPI------------YPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GPI+NL H+ADP
Sbjct: 230 QAIVTGKGPIENLFDHVADP 249
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 126/264 (47%), Gaps = 53/264 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + + G ++ +RK A +S S+ P+R + F
Sbjct: 7 ALSSPSFAGQAVKLSPSASEISGNGRITMRK----AVAKSAPSSSPWYGPDRVKYLGPFS 62
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 63 GESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 GVKFGEVVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 180 PLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADP 249
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 130/276 (47%), Gaps = 58/276 (21%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLWFP 68
A+SSPS A KA L +L NG + R+ + + + P+R +
Sbjct: 7 ALSSPSF--------AGKAVKLSPAPRELMGNGRVSMRRTAKPTPSGSPWYGPDRVKYLS 58
Query: 69 --GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADI 157
+ G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAG- 177
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM +
Sbjct: 178 -GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFS 222
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ G + Q I TG GP++NL HLADP + +A T
Sbjct: 223 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 106/215 (49%), Gaps = 46/215 (21%)
Query: 61 PNRPLWFP-----GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P P +L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 51 PDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAMLG 110
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG +PE K G + P W+ G L D+ F I E+I +G
Sbjct: 111 AAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVILVGG 170
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R + G + D + +PGG FDPLG P++ L+ KEI
Sbjct: 171 AEYYRSTNKDVYGLQDLDRL------------HPGGA-FDPLGLAK-DPDQFALLKVKEI 216
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 217 KNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDP 251
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 123/249 (49%), Gaps = 56/249 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK + T+ VS SA+ + P+R L+ F G PP L G PGD
Sbjct: 31 AGVHGEARVTMRK----SSTKKVSASASTSPWYGPDRVLYLGPFSGE-PPSHLTGEFPGD 85
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 86 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 145
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEITDPI------ 197
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI+
Sbjct: 198 ------YPGGS-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 235 NLIAHLADP 243
NL HLADP
Sbjct: 250 NLADHLADP 258
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 54/257 (21%)
Query: 13 ISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP 72
+++ +S + +VA + +F+G ++ + AG + VS + AD + W+ G+ P
Sbjct: 1 MAAVASIAASNVAVLARKAFVGQA---VKASAKPAGAKPVS-TVVRADLGKK-WYTGAKP 55
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +LDGS+PGD+G+DPL + EI + RWAM+G AG+ + LT+ GI +
Sbjct: 56 PAYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISD 115
Query: 120 TPSWYTAGELEYFT---DTTTLFIVEMIFIGWAEGRR---WADIIKPGCVNTDPIFPNNK 173
P WY AG + + D TL +E+ EG R W KPG ++
Sbjct: 116 LPDWYEAGAVAQASSPFDLQTLIAIEIFVFATVEGFRISTWKKTGKPGFLD--------- 166
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
+ G D SP+ +R KEIKNGRLAM A +G Q+ G GP+
Sbjct: 167 IMGMD-----------------SPD----MRLKEIKNGRLAMFAFVGFVAQYFVNGMGPV 205
Query: 234 DNLIAHLADPGHATVFA 250
+ L+ HL +P VF+
Sbjct: 206 EGLLNHLENPQQNNVFS 222
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 111/219 (50%), Gaps = 38/219 (17%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R L+ PG S P +L+G+L GD+G+DPLGL E++H RWAML
Sbjct: 96 PSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLA 155
Query: 103 AAGIFIPELLTKLGI-LNTPSWY-------TAGELEYF-------TDTTTLFIV---EMI 144
AAGI IPE L G + +W+ G L YF + LF+V E+
Sbjct: 156 AAGIIIPEGLQANGAAIKGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVA 215
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+G E R + PG F ++ +G D YPGG FDPLG PE EL+
Sbjct: 216 LLGAVERYRQSGEGPPGYSPGVGKFDSSIFSGLDNLYPGGP-FDPLGLAD-DPETFAELK 273
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KEIKNGRLA+++V+G Q TG GP N H+ADP
Sbjct: 274 VKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADP 312
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 106/213 (49%), Gaps = 42/213 (19%)
Query: 61 PNRPLWFPGSTPP-EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
P+R + TP ++L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 32 PDRAKFLGPFTPESDYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGC 91
Query: 107 FIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWAE 150
PELL K G+ W+ AG L Y + + V++I +G AE
Sbjct: 92 ITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAE 151
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
R A+ PG D D YPGG +FDPLG P+ + EL+ KE+KN
Sbjct: 152 AYR-ANGGAPGGFGED----------LDSLYPGGKFFDPLGLAD-DPDTLAELKVKELKN 199
Query: 211 GRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
GRLAM ++ G + Q I TG GPI NL AHLADP
Sbjct: 200 GRLAMFSMFGFFVQAIVTGQGPIANLDAHLADP 232
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 106/211 (50%), Gaps = 45/211 (21%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLG 181
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 182 EVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFF 227
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
Q I TG GP++NL HLADP + +A T
Sbjct: 228 VQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 126/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G ++ +RK A +S S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEISGNGRITMRK----AVAKSAPSSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEVVDPL------------YPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GP++NL HLADP
Sbjct: 223 STFGFFVQAIVTGKGPLENLADHLADP 249
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 120/246 (48%), Gaps = 50/246 (20%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGF 86
A G ++ +RK+ A S S S P+R L+ F G PP +L G PGD+G+
Sbjct: 28 AGVHGESRVTMRKSAAKKSFASASPSPWYG-PDRVLYLGPFSGE-PPSYLTGEFPGDYGW 85
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++H RWAMLGA G PELL K G+ W+ AG
Sbjct: 86 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFS 145
Query: 129 ---LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 EGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI--------- 194
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 195 ---YPGGS-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
Query: 238 AHLADP 243
HLADP
Sbjct: 250 DHLADP 255
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 125/264 (47%), Gaps = 51/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SS S + + G K+ +RK A + VS + P+R + F
Sbjct: 7 ALSSSSFVGKAVKLSPSSSEITGNGKVTMRKTATKA--KPVSSGSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL +
Sbjct: 65 GESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 124 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 228 GFFVQAIVTGKGPLENLADHLADP 251
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 127/267 (47%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G ++ +RK A +S S+ P+R +
Sbjct: 4 ATMALSSPSFAGQAVKLSPSASEITGNGRITMRK----AVAKSAPSSSPWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 60 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
VN P+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 GPLGEVVN--PL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 130/267 (48%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLWF 67
A A+SSP+ + + ++A+ G ++ +RK TA VS S + +R L+
Sbjct: 4 ATMALSSPA--MAGTPVKVSRATPFGEGRITMRK---TAAKPKVSASGSPWYGSDRVLYL 58
Query: 68 P--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 59 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 178
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 --GPLGEIVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 222
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HL+DP
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLSDP 249
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 49/223 (21%)
Query: 61 PNRPLWFPGS---TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP W P + P++L G PGD+G+D LGL E++H RWAMLGA
Sbjct: 128 PDRPKWLPDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAMLGAL 187
Query: 105 GIFIPELLT-KLGI-LNTPSWYTAGELEYFTDTTTLFI----------------VEMIFI 146
G PE+L G+ L P W+ AG L D + ++ +++ +
Sbjct: 188 GCIFPEILAMNYGVGLEEPVWFKAGAL-VLNDKSIDYLGSPQLVHASSIIAIAAAQVLLM 246
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
G AE R + + PN + D +PGG +F+PL +G + + EL+ K
Sbjct: 247 GGAEAYRASGVA-----------PNGE--EFDKMHPGGYYFNPLKFGKDEAD-LAELKVK 292
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
EIKNGRLAM +++G + Q TG GP+ NL+ H AD + +F
Sbjct: 293 EIKNGRLAMFSMLGFYIQAATTGNGPLQNLVDHRADAANENIF 335
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 119/248 (47%), Gaps = 38/248 (15%)
Query: 35 GKKLKLRKN---GATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLP 81
GK+L+ R A +RS +A + +WF P P+ L GS P
Sbjct: 65 GKQLQERMQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPYDYPDHLQGSFP 124
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTA 126
GD+GFD GL EI+H RWAML A G+ IPE+L K +N W+
Sbjct: 125 GDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVNFAESVWWRV 184
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGR------RWADIIKPGCVN---TDPIFPNNKLTGT 177
G + DT + + I A+G ++ ++ P + + P
Sbjct: 185 GYAKLEGDTLDYLGIPGLHIVGAQGIIVIAICQFLLMVGPEYARYCGIEALEPLGIYLPG 244
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D+ YPGG+ FDPLG S P +EL+ KEIKNGRLAM+A +G + Q + T GP++NL+
Sbjct: 245 DINYPGGVLFDPLGL-SKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLL 303
Query: 238 AHLADPGH 245
HL DP H
Sbjct: 304 DHLQDPLH 311
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 114/234 (48%), Gaps = 51/234 (21%)
Query: 46 TAGTRSVS-VSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL---------- 91
T TR V+ SA P+R + F G+TP +L G PGD+G+D GL
Sbjct: 15 TRATRQVTRASAEFYGPDRVKFLGPFSGATP-SYLKGEYPGDYGWDTAGLSADPETFSRY 73
Query: 92 ---EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTT--- 136
E++H RWAMLGA G PELL K G N W+ AG L+Y +
Sbjct: 74 RELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNANLVH 133
Query: 137 -----TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 191
+ + +++ +G EG R P TDPI+P G FDPLG
Sbjct: 134 AQSIVAVLLTQIVLMGLIEGYRVNG--GPAGEITDPIYP-------------GEAFDPLG 178
Query: 192 WGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
P+ + EL+ KEIKNGRLAM+++ G + Q I TG GPI+NL HLA PG
Sbjct: 179 LAD-DPDTLAELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGE 231
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 130/264 (49%), Gaps = 54/264 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS ++V A L ++ +RK + +R+VS + P+R + F
Sbjct: 4 ALSSPS-LAGKAVKLAPSTPELNVGRVSMRK----SASRNVSSGSPWYGPDRVKYLGPFS 58
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 59 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 118 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIAG--G 175
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 176 PLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 221
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GPI+NL HLADP
Sbjct: 222 GFFVQAIVTGKGPIENLADHLADP 245
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 123/255 (48%), Gaps = 33/255 (12%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSA-AAADPNRPLWFPGS 70
A+SSP+ + LG ++ +RK TA + S S +D + L
Sbjct: 2 ALSSPAFAGKAVKLSPAASEVLGSGRVTMRKT--TAKPKGPSGSPWYGSDRVKYLGPFSG 59
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 118 -LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
W+ AG + F+D +L + I WA +I G V +
Sbjct: 120 KFGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVA 173
Query: 170 PNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
N L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I T
Sbjct: 174 GNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 231
Query: 229 GTGPIDNLIAHLADP 243
G GPI+NL HLADP
Sbjct: 232 GKGPIENLADHLADP 246
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 120/250 (48%), Gaps = 39/250 (15%)
Query: 33 LGG---KKLKLRKNGATAGTRSVSVSAAAADPN-------RPLWFPGSTP---PEWLDGS 79
LGG ++L+ +KN A A + A A + RP W G P P++L G
Sbjct: 78 LGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWL-GPLPYDYPKYLTGE 136
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWY 124
LPGD+GFD GL EI+H RWAML + G +PE+L G + P W+
Sbjct: 137 LPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWW 196
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV---------NTDPIFPNNKLT 175
G + DT + + + ++G I + + + + P
Sbjct: 197 RVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYL 256
Query: 176 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
D+ YPGG+ FDPL S E +EL+ KEIKNGRLAM+A +G + Q TG GP+ N
Sbjct: 257 PGDINYPGGVLFDPLNL-SKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQN 315
Query: 236 LIAHLADPGH 245
L+ H+ADP H
Sbjct: 316 LLNHIADPFH 325
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 121/247 (48%), Gaps = 53/247 (21%)
Query: 28 TKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWF-PGSTP-PEWLDGSLPGDFG 85
K +GG ++ +R+ +A T + P+RP + P S P +L G PGD+G
Sbjct: 25 CKIGAVGGGRVSMRRTVKSAPT------SIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYG 78
Query: 86 FDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE--- 128
+D GL E++HCRWAMLGA G PE+L+K G+ W+ AG
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIF 138
Query: 129 ----LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 176
L+Y + ++ +++ +G+ EG R V P+ G
Sbjct: 139 SEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------VGGGPLG-----EG 184
Query: 177 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 236
D YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 185 LDPIYPGGA-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 237 IAHLADP 243
HLADP
Sbjct: 243 FDHLADP 249
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 123/252 (48%), Gaps = 53/252 (21%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLG 90
G K +RK ++SVS + P+R + F G PP +L G PGD+G+D G
Sbjct: 19 GNAKFTMRKTA----SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAG 73
Query: 91 L-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------L 129
L E++H RWAMLGA G PELL++ G+ W+ AG L
Sbjct: 74 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGL 133
Query: 130 EYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGY 181
+Y + + ++ +++ +G EG R A P TDPI Y
Sbjct: 134 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPI------------Y 179
Query: 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 241
PGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLA
Sbjct: 180 PGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 237
Query: 242 DPGHATVFAAFT 253
DP + +A T
Sbjct: 238 DPVNNNAWAYAT 249
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 130/267 (48%), Gaps = 53/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLWF 67
A A+SSP+ + + ++A+ G ++ +RK TA VS S + +R L+
Sbjct: 3 ATMALSSPA--MAGTPVKVSRATPFGEGRITMRK---TAAKPKVSASGSPWYGSDRVLYL 57
Query: 68 P--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 58 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 118 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 177
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 178 --GPLGEIVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 221
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HL+DP
Sbjct: 222 SMFGFFVQAIVTGKGPLENLADHLSDP 248
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 102/194 (52%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL +++HCRWAMLGA G PELL + G+
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLARNGVK 125
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG L+Y + + + ++ I WA +I G V +
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVAG 179
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
+ L D+ YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 180 DGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKEIKNGRLAMFSMFGFFAQAIVTG 237
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 238 KGPLENLADHLADP 251
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 99/201 (49%), Gaps = 46/201 (22%)
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
S PE+L G +PGD+GFDP GL E++H RWAMLGAAG IPE K G
Sbjct: 75 SDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAMLGAAGFVIPEAFNKFG 134
Query: 117 ILNTPS--WYT-------AGELEYFTDTTTLFIV-----EMIFIGWAEGRRWADIIKPGC 162
P W+ G L YF + +V E+I +G AE R
Sbjct: 135 AQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLAEVILVGGAEYYR--------S 186
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+N G D +PGG FDPLG P+ L+ KEIKNGRLAM A++G +
Sbjct: 187 INN---------LGLDRLHPGG-PFDPLGLAK-DPDNFALLKVKEIKNGRLAMFAMLGFF 235
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q TG GP++NL HL+DP
Sbjct: 236 IQAYATGEGPVENLTTHLSDP 256
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 119/244 (48%), Gaps = 58/244 (23%)
Query: 40 LRKNGATAGTR-SVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLPGDFGFDP 88
+RK G+ G R S+ + +A P+ +W+ P P +L G PGD+G+D
Sbjct: 2 VRKXGSFGGGRFSMRRTVKSAPPS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT 59
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------ 128
GL E++HCRWAMLGA G PE+L+K G+ W+ AG
Sbjct: 60 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNGVKFGEAVWFKAGAQIFSEG 119
Query: 129 -LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L+Y + ++ V+++ +G+ EG R P DPI
Sbjct: 120 GLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGEGLDPI----------- 166
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL H
Sbjct: 167 -YPGGA-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDH 223
Query: 240 LADP 243
LADP
Sbjct: 224 LADP 227
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 109/229 (47%), Gaps = 49/229 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R LW T P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 55 PDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLGALG 114
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PELL K G + P W+ AG L+Y + V++I +G
Sbjct: 115 CITPELLAKNGTPIVEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQVILMGAI 174
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R VN P G D +PGG +FDPLG P+ EL+ KEIK
Sbjct: 175 EGYR---------VNGGPAG-----EGLDKLHPGGQFFDPLGLAE-DPDAFAELKVKEIK 219
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF---AAFTPK 255
NGRLAM ++ G + Q I TG GP+ NL HLA P + F FTP+
Sbjct: 220 NGRLAMFSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFTYAQKFTPQ 268
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 136/275 (49%), Gaps = 54/275 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---F 67
A+SSP+ + V + + LG + +RK +A T+ V+ S + P+R + F
Sbjct: 7 ALSSPT-LAGKPVKLSPSSQELGASRFTMRK---SATTKKVASSGSPWYGPDRVKYLGPF 62
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 SGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAG-- 179
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P TDP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSM 225
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HL+DP + +A T
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYAT 260
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 100/194 (51%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 120
Query: 118 LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG + F+D +L + I WA +I G V +
Sbjct: 121 FGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAG 174
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
N L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 175 NGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 232
Query: 230 TGPIDNLIAHLADP 243
GPI+NL HLADP
Sbjct: 233 KGPIENLADHLADP 246
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 120/250 (48%), Gaps = 56/250 (22%)
Query: 23 SVAGATKASFLGGKKLK-------LRKNGATAGTRSVSVSAAAA------DPNRPLWFP- 68
+ A A ++S L G+ L ++K GA+ ++ + +A P+RP +
Sbjct: 2 ATASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGP 61
Query: 69 -GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
P +L G PGD+G+D GL E++HCRWAMLGA G PELL K
Sbjct: 62 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK 121
Query: 115 LGI-LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
G+ W+ A ++ +++ +G EG R V P+
Sbjct: 122 TGVKFGEAVWFKA-----------IWASQVVLMGLIEGYR---------VGGGPLG---- 157
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI
Sbjct: 158 -EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 214
Query: 234 DNLIAHLADP 243
+NL HLADP
Sbjct: 215 ENLFDHLADP 224
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 127/267 (47%), Gaps = 52/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A AISS SS ++V + + G K +RK A + VS + P+R +
Sbjct: 4 ATMAISS-SSFAGKAVNVPSSSQITGNGKATMRKTVTKA--KPVSSGSPWYGPDRVKYLG 60
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G P +L G PGD+G+D GL E++HCRWAMLGA G PEL
Sbjct: 61 PFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 119
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 180 --GPLGEVIDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 223
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 224 SMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 123/258 (47%), Gaps = 43/258 (16%)
Query: 17 SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---- 72
S+ +S + AG T L + +RK G +G R+ + P + +W+ P
Sbjct: 4 SAIQSSAFAGQTS---LKQQNELVRKVGNFSGGRATMRRTVKSTP-QSIWYGADRPKYLG 59
Query: 73 ------PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
P +L G PGD+G+D GL E++H RWAMLGA G PE+L+
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 119
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
K G+ W+ AG L+Y + + ++ I WA +I+ V
Sbjct: 120 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WASQVVLMGLIEGYRVGG 178
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
P+ G D YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q
Sbjct: 179 GPLG-----EGLDKIYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQA 231
Query: 226 IYTGTGPIDNLIAHLADP 243
I TG GP++NL HLADP
Sbjct: 232 IVTGKGPVENLFDHLADP 249
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 120/244 (49%), Gaps = 54/244 (22%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
G +L +RK G +SV+ S+ + P+R L+ F G PP +L G PGD+G+D
Sbjct: 39 GEARLTMRK---ATGKKSVAASSDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDT 94
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------ 128
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 95 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
Query: 129 -LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L+Y ++ ++I +G EG R A P TDPI
Sbjct: 155 GLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPI----------- 201
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 202 -YPGGN-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 258
Query: 240 LADP 243
LADP
Sbjct: 259 LADP 262
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 117/246 (47%), Gaps = 50/246 (20%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGF 86
A G ++ +RK+ A S S S P+R L+ F G PP +L G PGD+G+
Sbjct: 28 AGVHGESRVTMRKSAAKKSFASASPSPWYG-PDRVLYLGPFSGE-PPSYLTGEFPGDYGW 85
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG----- 127
D GL E++H RWAMLGA G PELL K G+ W+ AG
Sbjct: 86 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFS 145
Query: 128 ----------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L + ++ ++I +G EG R A P TDPI
Sbjct: 146 EGGLDHLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI--------- 194
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 195 ---YPGGS-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
Query: 238 AHLADP 243
HLADP
Sbjct: 250 DHLADP 255
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 117/248 (47%), Gaps = 38/248 (15%)
Query: 35 GKKLKLRKN---GATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLP 81
GK+L+ R A +RS +A + +WF P P+ L GS P
Sbjct: 65 GKQLQERMQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPYDYPDHLQGSFP 124
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL-GILNTPS-WYTA 126
GD+GFD GL EI+H RWAML A G+ IPE+L K G+ S W+
Sbjct: 125 GDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVKFAESVWWRV 184
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK---------PGCVNTDPIFPNNKLTGT 177
G + DT + + I A+G I + + + P
Sbjct: 185 GYAKLEGDTLDYLGIPGLHIVGAQGILVIAICQFLLMVGPEYARYCGIEALEPLGIYLPG 244
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D+ YPGG+ FDPLG S P +EL+ KEIKNGRLAM+A +G + Q + T GP++NL+
Sbjct: 245 DINYPGGVLFDPLGL-SKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLL 303
Query: 238 AHLADPGH 245
HL DP H
Sbjct: 304 DHLQDPLH 311
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 134/277 (48%), Gaps = 55/277 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS ++V + +G + +RK T+ V + P+R +
Sbjct: 4 ATMALSSPS-LAGKAVKLNPFSEIMGNGCISMRKT-----TKPVPSGSPWYGPDRVKYLG 57
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G PP +L G PGD+G+D GL E++H RWAMLGA G PELL
Sbjct: 58 PFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 116
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
++ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 117 SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 176
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM
Sbjct: 177 --GPLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMF 220
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+++G + Q I TG GP++NL HLADP + +A T
Sbjct: 221 SMLGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 257
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 120/250 (48%), Gaps = 42/250 (16%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPE 74
+++F G LK +RK G G S+ + +A P+RP + P
Sbjct: 7 QQSAFAGQTILKPQNELVRKFGGNGGRASMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 66
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 67 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGE 126
Query: 121 PSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
W+ AG L+Y + + ++ I WA +I+ V P+
Sbjct: 127 AVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAI-WASQVVLMGLIEGYRVGGGPLG---- 181
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
G D YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GPI
Sbjct: 182 -EGLDKLYPGGA-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 238
Query: 234 DNLIAHLADP 243
+NL HLADP
Sbjct: 239 ENLSDHLADP 248
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 118/243 (48%), Gaps = 29/243 (11%)
Query: 24 VAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLWFPG-----STPPEW 75
+GA K L KK + ATA + + A P+R ++ P S PE+
Sbjct: 28 TSGAQKIVSLFSKKPAQKAKPATASSSGSDIGDELAKWYGPDRRIFLPEGLLDRSEVPEY 87
Query: 76 LDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS 122
L+G +PGD+G+DP GL E++H RWAMLGAAG IPE K G P
Sbjct: 88 LNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPE 147
Query: 123 --WYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
W+ G L +T F I I A ++ G I N L D
Sbjct: 148 AVWFKTGALLLEGNTLNYF-GNSIPINLAVAVVAEVVLVGGAEYYRII---NGLDLEDKL 203
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
+PGG FDPLG S P++ L+ KEIKNGRLAM +++G + Q TG GP++NL HL
Sbjct: 204 HPGG-PFDPLGLAS-DPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHL 261
Query: 241 ADP 243
+DP
Sbjct: 262 SDP 264
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 134/279 (48%), Gaps = 62/279 (22%)
Query: 1 MASVCASPAVAAISS--PSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
+ S CA A A +SS P + + V GA G +L +RK G +SV+ S +
Sbjct: 10 IGSRCAF-AGAQLSSVKPQNNQLLGVGGAH-----GEARLTMRK---ATGRKSVAASIDS 60
Query: 59 --ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAM 100
P+R ++ F G PP +L G PGD+G+D GL E++H RWAM
Sbjct: 61 PWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 119
Query: 101 LGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMI 144
LGA G PELL + G+ W+ AG +L + ++ ++I
Sbjct: 120 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVI 179
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+G EG R A P TDPI YPGG FDPLG P+ +++
Sbjct: 180 LMGAIEGYRVAG--GPLGEVTDPI------------YPGGN-FDPLGLAD-DPDAFADVK 223
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KEIKNGRLAM ++ G + Q I TG GPI+NL HLADP
Sbjct: 224 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 262
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 123/254 (48%), Gaps = 54/254 (21%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
G +L +RK G +SV+ S+ + P+R L+ F G PP +L G PGD+G+D
Sbjct: 39 GEARLTMRK---ATGKKSVAASSDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDT 94
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG------- 127
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 95 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
Query: 128 --------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L + ++ ++I +G EG R A P TDPI
Sbjct: 155 WLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPI----------- 201
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 202 -YPGGN-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 258
Query: 240 LADPGHATVFAAFT 253
LADP + +A T
Sbjct: 259 LADPVNNNAWAYAT 272
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 105/212 (49%), Gaps = 45/212 (21%)
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 63 QPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 118 -LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPL 180
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 181 GEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGF 226
Query: 222 WFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL HLADP + +A T
Sbjct: 227 FVQAIVTGKGPVENLADHLADPVNNNAWAYAT 258
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 123/257 (47%), Gaps = 44/257 (17%)
Query: 23 SVAGATKASFLGGKKLK-------LRKNGATAGTRSVSVSAAAA------DPNRPLWFP- 68
+ A A ++S L G+ L ++K GA+ ++ + +A P+RP +
Sbjct: 2 ATASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGP 61
Query: 69 -GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
P +L G PGD+G+D GL E++H RWAMLGA G PELL K
Sbjct: 62 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
G+ W+ AG L+Y + + ++ I WA +I+ V
Sbjct: 122 TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGLIEGYRVGGG 180
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I
Sbjct: 181 PLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 233
Query: 227 YTGTGPIDNLIAHLADP 243
TG GPI+NL HLADP
Sbjct: 234 VTGKGPIENLFDHLADP 250
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 124/262 (47%), Gaps = 51/262 (19%)
Query: 23 SVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGS 79
SV A++A G + A A + S P+R + F P +L G
Sbjct: 3 SVVAASRA--FTGITARQSTKSAKARKQVTRASVEFYGPDRAKFLGPFSEGAVPSYLKGE 60
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN---TPSW 123
PGD+G+D GL E++H RWA+LGA GI PE L + G ++ W
Sbjct: 61 FPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVW 120
Query: 124 YTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
+ AG +L + + +++ +G AE R+A G V+T
Sbjct: 121 FKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRYA---GEGPVDTS-- 175
Query: 169 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
+KL YPGG +FDPLG G PE + EL+ KEIKNGRLA ++V G + Q + T
Sbjct: 176 --GDKL------YPGG-FFDPLGLGD-DPEALAELKVKEIKNGRLAQVSVFGFFVQALVT 225
Query: 229 GTGPIDNLIAHLADPGHATVFA 250
G GP++NL HLADP + FA
Sbjct: 226 GKGPLENLDDHLADPWNNNGFA 247
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 123/257 (47%), Gaps = 44/257 (17%)
Query: 23 SVAGATKASFLGGKKLK-------LRKNGATAGTRSVSVSAAAA------DPNRPLWFP- 68
+ A A ++S L G+ L ++K GA+ ++ + +A P+RP +
Sbjct: 2 ATASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGP 61
Query: 69 -GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
P +L G PGD+G+D GL E++H RWAMLGA G PELL K
Sbjct: 62 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
G+ W+ AG L+Y + + ++ I WA +I+ V
Sbjct: 122 TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WASQVGLMGLIEGYRVGGG 180
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I
Sbjct: 181 PLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 233
Query: 227 YTGTGPIDNLIAHLADP 243
TG GPI+NL HLADP
Sbjct: 234 VTGKGPIENLFDHLADP 250
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 133/274 (48%), Gaps = 54/274 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS +++ + L G ++ +RK ++SVS + P+R + F
Sbjct: 7 ALSSPS-LAGQAIKLSPSTPDLSGGRISMRKTA----SKSVSSGSPWYGPDRVKYLGPFS 61
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 62 GEAP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARN 120
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAG--G 178
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 179 PLGEVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 224
Query: 220 GAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 225 GFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 124/257 (48%), Gaps = 44/257 (17%)
Query: 23 SVAGATKASFLGGKKLK-------LRKNGATAGT----RSVSVSAAAA--DPNRPLWFP- 68
+ A A ++S L G+ L ++K GA+ R+V ++ + P+RP +
Sbjct: 2 ATASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRIAPESIWYGPDRPKYLGP 61
Query: 69 -GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
P +L G PGD+G+D GL E++H RWAMLGA G PELL K
Sbjct: 62 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
G+ W+ AG L+Y + + ++ I WA +I+ V
Sbjct: 122 TGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGLIEGYRVGGG 180
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I
Sbjct: 181 PLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 233
Query: 227 YTGTGPIDNLIAHLADP 243
TG GPI+NL HLADP
Sbjct: 234 VTGKGPIENLFDHLADP 250
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 126/265 (47%), Gaps = 49/265 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSA-AAADPNRPLWF 67
A A+SSP ++ A +T ++ G ++ +RK A + S S AD L
Sbjct: 4 ATMALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGP 60
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PP +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 61 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLAR 120
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ V+++ +G EG R A
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG-- 178
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KEIK GRLAM ++
Sbjct: 179 GPLGEVVDPL------------YPGGA-FDPLGLAD-DPEAFAELKVKEIKKGRLAMFSM 224
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADP 249
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 132/266 (49%), Gaps = 54/266 (20%)
Query: 12 AISSPS-SQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW--- 66
A+SSP+ + K + + LGG + +RK +A T+ V+ S + P+R +
Sbjct: 7 ALSSPTLTGKPVETSANPSSQELGGARFTMRK---SATTKKVASSGSPWYGPDRVKYLGP 63
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
F G +P +L G PGD+G+D GL E++H RWAMLGA G PELL+
Sbjct: 64 FSGESP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLS 122
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADI 157
+ G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG- 181
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM +
Sbjct: 182 -GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFS 226
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GP++NL HL+DP
Sbjct: 227 MFGFFVQAIVTGKGPLENLADHLSDP 252
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 124/253 (49%), Gaps = 53/253 (20%)
Query: 33 LGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPL 89
LG ++ +RK +++VS + P+R + F G PP +L G PGD+G+D
Sbjct: 8 LGVGRVSMRKTA----SKTVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTA 62
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------- 128
GL E++H RWAMLGA G PELL + G+ SW+ AG
Sbjct: 63 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGG 122
Query: 129 LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 123 LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------ 168
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG FDPL PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HL
Sbjct: 169 YPGGS-FDPLALAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 226
Query: 241 ADPGHATVFAAFT 253
A+P + +A T
Sbjct: 227 AEPVNNNAWAYAT 239
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 120/250 (48%), Gaps = 42/250 (16%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPE 74
K++ G + L+ +RK G + G S+ + AA P+RP + P
Sbjct: 7 QKSALAGQRGLRQRDELVRKVGVSDGRVSMRRTVKAAPQSIWYGPDRPKFLGPFSEQTPS 66
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++H RWAMLGA G PELL+K G+
Sbjct: 67 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNGVKFGE 126
Query: 121 PSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
W+ AG L+Y + + ++ I WA I+ V P+
Sbjct: 127 AVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WATQVVLMGFIEGYRVGGGPLG---- 181
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP+
Sbjct: 182 -EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238
Query: 234 DNLIAHLADP 243
+NL HLADP
Sbjct: 239 ENLSDHLADP 248
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 120/262 (45%), Gaps = 53/262 (20%)
Query: 11 AAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGS 70
A + P++ +R V G ++ +RK A + AD L
Sbjct: 12 ALVGKPATTSTRDV--------FGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSG 63
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 118 -LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAG--GPL 181
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 182 GEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGF 227
Query: 222 WFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL HLADP
Sbjct: 228 FVQAIVTGKGPLENLADHLADP 249
>gi|253761884|ref|XP_002489316.1| hypothetical protein SORBIDRAFT_0010s017110 [Sorghum bicolor]
gi|241946964|gb|EES20109.1| hypothetical protein SORBIDRAFT_0010s017110 [Sorghum bicolor]
Length = 121
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGILNTPS-WYTAGELEYFTDTTTLFIVEMIFIGWAEG 151
++H WAML AAGI IP+LL + G +NT W+ AG EYF D TLF+++M +GWAE
Sbjct: 1 MMHGWWAMLAAAGILIPDLLVRCGFINTGYLWFDAGSREYFVDPWTLFVLQMALVGWAES 60
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
RR AD ++ CV+ +P F N K D+GYPGG+WFD WG P K ++ ++
Sbjct: 61 RRCADFLRRSCVDIEPCFANRKNPVLDIGYPGGVWFDWPNWGWHEPSISKRIQAARVRE 119
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 106/229 (46%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + ++ P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL K G W+ AG L+Y + V++I +G
Sbjct: 100 GCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 160 IEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GP+ NL HLA+PG FA FTP
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKFTP 252
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 130/278 (46%), Gaps = 65/278 (23%)
Query: 3 SVCASPAVAAIS---SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA 59
+V SPAVA ++ + SS KSR + +S +G R++G+ VS+SA
Sbjct: 4 AVGCSPAVAPVAFAGAFSSAKSRFFS--PTSSLVG------RRHGSR-----VSMSAE-- 48
Query: 60 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
W PG P LDGS PGDFGFDPL L E++HCRWAML G+
Sbjct: 49 ------WMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGM 102
Query: 107 FIPELLTKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADII 158
IPE L + W + YF + VE + I + E +R
Sbjct: 103 LIPEALGLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR----- 157
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
N +P K YPGG FDPLG+ S P K KE + KEIKNGRLA+LA
Sbjct: 158 -----NGEPDPEKRK-------YPGGA-FDPLGF-SKDPVKFKEYKVKEIKNGRLALLAF 203
Query: 219 MGAWFQ-HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
+G Q GTGP++NL HL+DP H + P+
Sbjct: 204 VGFCVQASANPGTGPLENLATHLSDPWHRNIAEIIIPR 241
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 103/222 (46%), Gaps = 48/222 (21%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + ++ P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGW 148
GI PELL K G+ W+ AG L + + V+++ +G
Sbjct: 100 GIVTPELLQKNGVQFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVVLLGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 160 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGRLAM + G + Q I TG GPI NL HL++PG FA
Sbjct: 204 KNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFA 245
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 124/272 (45%), Gaps = 53/272 (19%)
Query: 11 AAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGS 70
A + P++ +R V G ++ +RK A + AD L
Sbjct: 13 ALVGKPATTSTRDV--------FGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSG 64
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 65 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 118 -LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAG--GPL 182
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 183 GEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGF 228
Query: 222 WFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL HLADP + +A T
Sbjct: 229 FVQAIVTGKGPLENLADHLADPVNNNAWAYAT 260
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 134/275 (48%), Gaps = 54/275 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---F 67
A+SSP+ + V + LG + +RK +A T+ V+ S + P+R + F
Sbjct: 7 ALSSPT-LAGKPVKLTPSSQELGAARFTMRK---SATTKKVASSGSPWYGPDRVKYLGPF 62
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 SGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-- 179
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSM 225
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
G + Q I TG GP++NL HLADP + +A T
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 260
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 105/222 (47%), Gaps = 48/222 (21%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + ++ P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 31 PNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAMLGAL 90
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
GI PELL K G+ W+ AG L Y + + + V++I +G
Sbjct: 91 GIVTPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVILLGL 150
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 151 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 194
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGRLAM + G + Q I TG GPI NL HL++PG FA
Sbjct: 195 KNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFA 236
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 129/261 (49%), Gaps = 57/261 (21%)
Query: 33 LGGKKLKL----RKNGATAGTRSVSVSAAAADP----NRPLW---FPGSTPPEWLDGSLP 81
L GK +KL ++ G + ++V+ A++ P +R + F G PP +L G P
Sbjct: 13 LAGKAVKLSPSTQEVGRVSMRKTVTKQASSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFP 71
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 127
GD+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 72 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 131
Query: 128 EL-------EYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
L +Y + + ++ ++I +G EG R A P TDPI
Sbjct: 132 SLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI---- 185
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP
Sbjct: 186 --------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 235
Query: 233 IDNLIAHLADPGHATVFAAFT 253
++NL HL+DP ++ +A T
Sbjct: 236 LENLADHLSDPVNSNAWAYAT 256
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 105/228 (46%), Gaps = 50/228 (21%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P RPL+ T PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 43 PERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG 102
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWA 149
PELL K G W+ AG L+Y + V++I +G
Sbjct: 103 CITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLV 162
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R P DP++P G FDPLG P+ EL+ KEIK
Sbjct: 163 EGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEIK 206
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
NGRLAM ++ G + Q I TG GPI NL HL++P FA FTP
Sbjct: 207 NGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTP 254
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 50/263 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
++SSP+ ++V ++ G ++ +RK A A + V + +R L+
Sbjct: 7 SLSSPAFA-GKAVKNLPSSALFGEARVTMRKTAAKA--KPVPSGSPWYGADRVLYLGPLS 63
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G
Sbjct: 64 GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 123
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 124 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GP 181
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G
Sbjct: 182 LGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEVKNGRLAMFSMFG 227
Query: 221 AWFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL H+ DP
Sbjct: 228 FFVQAIVTGKGPLENLADHITDP 250
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 124/267 (46%), Gaps = 51/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SSPS + + G K +RK A + VS + P+R +
Sbjct: 4 ATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKA--KPVSSGSPWYGPDRVKYLG 61
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G P +L G PGD+G+D L E++HCRWAMLGA G PELL
Sbjct: 62 PFSGEAP-SYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 181 --GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 102/202 (50%), Gaps = 45/202 (22%)
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
+PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 63 SPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 118 -LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPL 180
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 181 GEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGF 226
Query: 222 WFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL H+ADP
Sbjct: 227 FVQAIVTGKGPLENLADHIADP 248
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 101/202 (50%), Gaps = 45/202 (22%)
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
+PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 63 SPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
Query: 118 -LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPL 180
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 181 GEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGF 226
Query: 222 WFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GPI+NL HL DP
Sbjct: 227 FVQAIVTGKGPIENLADHLTDP 248
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 116/240 (48%), Gaps = 49/240 (20%)
Query: 46 TAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL----------- 91
TAG + S+ P+R + F G PP +L G PGD+G+D GL
Sbjct: 49 TAGKLRPATSSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNR 107
Query: 92 --EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT----- 136
E++H RWAMLGA G PELL + G+ W+ AG L+Y +
Sbjct: 108 ELEVIHSRWAMLGALGCIFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 167
Query: 137 ---TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
++ V+++ +G EG R A P TDP++P N FDPLG
Sbjct: 168 SILAIWAVQVVLMGAVEGYRIAG--GPLGEITDPLYPGNS-------------FDPLGLA 212
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 213 D-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 271
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 105/213 (49%), Gaps = 47/213 (22%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++HCRWAMLGA G
Sbjct: 51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 110
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PE+L+K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 111 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFI 170
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D YPGG FDPLG PE EL+ KEIK
Sbjct: 171 EGYR---------VGGGPLG-----EGLDSIYPGGA-FDPLGLAD-DPEAFAELKVKEIK 214
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 242
NGRLAM ++ G + Q I TG GPI+NL HLAD
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLAD 247
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 123/258 (47%), Gaps = 44/258 (17%)
Query: 17 SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---- 72
S+ +S + AG T L + +RK G + G S+ + A + +W+ P
Sbjct: 4 SAIQSSAFAGQTA---LKQRDELVRKVGVSDGRFSMRRTVKAVP--QSIWYGADRPKFLG 58
Query: 73 ------PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
P +L G PGD+G+D GL E++H RWAMLGA G PELL+
Sbjct: 59 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLS 118
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
K G+ W+ AG L+Y + + ++ I WA +I+ V
Sbjct: 119 KNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WATQVVLMGLIEGYRVGG 177
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q
Sbjct: 178 GPLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 230
Query: 226 IYTGTGPIDNLIAHLADP 243
I TG GPI+NL H+ADP
Sbjct: 231 IVTGKGPIENLADHIADP 248
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 126/262 (48%), Gaps = 49/262 (18%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSA-AAADPNRPLWFPGS 70
A+SSP++ ++VA A G ++ +RK+ A + S S AD L
Sbjct: 7 ALSSPAALAGKAVA---NAKVFGEGRVTMRKSAAKPKPAAASGSPWYGADRVLYLGPLSG 63
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 118 -LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + + +++ +G EG R A P
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAG--GPL 181
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 182 GEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGF 227
Query: 222 WFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL HLADP
Sbjct: 228 FVQAIVTGKGPLENLADHLADP 249
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 124/260 (47%), Gaps = 49/260 (18%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S S+ ++V ++ G ++ +RK A A + VS + +R L+ P
Sbjct: 9 SSSAFAGKAVKNLPSSALFGEARVTMRKTAAKA--KPVSSGSPWYGSDRVLYLGPLSGEP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 231 QAIVTGKGPLENLADHLADP 250
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 121/259 (46%), Gaps = 61/259 (23%)
Query: 29 KASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------P 73
++SF G LK LRK G + G R + P + +W+ P P
Sbjct: 8 QSSFAGQTALKPSNDLLRKAGVSGGGRVTMRRTVKSTP-QSIWYGPDRPKYLGPFSENTP 66
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN 119
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 67 SYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFG 126
Query: 120 TPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
W+ AG L+Y + ++ V+++ +G+ EG R +
Sbjct: 127 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYR---------IG 177
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
P+ G D YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q
Sbjct: 178 GGPLG-----EGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQ 230
Query: 225 HIYTGTGPIDNLIAHLADP 243
I TG GPI+NL HLADP
Sbjct: 231 AIVTGKGPIENLFDHLADP 249
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 100/194 (51%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
Query: 118 LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG + F+D +L + I WA +I G V +
Sbjct: 125 FGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAG 178
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
N L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 179 NGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 237 KGPLENLSDHLADP 250
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 118/244 (48%), Gaps = 50/244 (20%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGF 86
A G ++ +RK+ S S S P+R L+ F G PP +L G PGD+G+
Sbjct: 28 AGIHGESRVTMRKSATKKSFASASPSPWYG-PDRVLYLGPFSGE-PPSYLTGEFPGDYGW 85
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 86 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 145
Query: 129 ---LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 146 EGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI--------- 194
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 195 ---YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 249
Query: 238 AHLA 241
HLA
Sbjct: 250 DHLA 253
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 108/234 (46%), Gaps = 50/234 (21%)
Query: 44 GATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------ 91
G G+R VS+SA W PG P LDGS PGDFGFDPL L
Sbjct: 37 GVCNGSR-VSMSAE--------WMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKE 87
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT--AGELEYFTDTT------TLFIVE 142
E++HCRWAML G+ IPE L + W + Y + VE
Sbjct: 88 SELIHCRWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGNQATYLGAPVPWGYLPVILAVE 147
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 202
+ I + E +R N +P K YPGG FDPLG+ S P K KE
Sbjct: 148 FLSIAFVESQR----------NGEPDPEKRK-------YPGGA-FDPLGF-SKDPAKFKE 188
Query: 203 LRTKEIKNGRLAMLAVMGAWFQ-HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
+ KEIKNGRLA+LA +G Q GTGP++NL HL+DP H + P+
Sbjct: 189 YKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNIAEIIIPR 242
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 129/265 (48%), Gaps = 54/265 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---F 67
A+SSP+ + V + LG + +RK A T+ V+ S + P+R + F
Sbjct: 7 ALSSPT-LAGKPVKLTPSSQELGAARFTMRK---AATTKKVASSGSPWYGPDRVKYLGPF 62
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 SGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-- 179
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSM 225
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLADP 250
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 119/241 (49%), Gaps = 52/241 (21%)
Query: 35 GKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL 91
G ++ +RK G + SV + P+R + F G +P +L G PGD+G+D GL
Sbjct: 36 GSRIAMRKTGKAS---SVGGGSPWYGPDRVKYLGPFSGESP-SYLTGEYPGDYGWDTAGL 91
Query: 92 -------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LE 130
E++H RWAMLGA G PELL+K GI W+ AG L+
Sbjct: 92 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGGLD 151
Query: 131 YFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYP 182
Y + + ++ ++I +G EG R A P TDPI YP
Sbjct: 152 YLGNPSLVHAQSILAIWASQVILMGAVEGYRIAG--GPLGEVTDPI------------YP 197
Query: 183 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 242
GG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLAD
Sbjct: 198 GGS-FDPLGLAE-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLAD 255
Query: 243 P 243
P
Sbjct: 256 P 256
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG + F+D +L + I WA +I G V + N
Sbjct: 127 GEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGN 180
Query: 172 NKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 181 EPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 238
Query: 231 GPIDNLIAHLADP 243
GPI+NL HLADP
Sbjct: 239 GPIENLADHLADP 251
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 117/250 (46%), Gaps = 44/250 (17%)
Query: 30 ASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PE 74
+SF G LK LRK GA+ G V + + +W+ P P
Sbjct: 9 SSFAGQTALKPSNDLLRKVGASNGGGRVVMRRTVKSTPQSIWYGPDRPKYLGPFSENTPS 68
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 69 YLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGE 128
Query: 121 PSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
W+ AG L+Y + + ++ I WA +I+ + P+
Sbjct: 129 AVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGLIEGYRIGGGPLG---- 183
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
G D YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q I TG GPI
Sbjct: 184 -EGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Query: 234 DNLIAHLADP 243
+NL HLADP
Sbjct: 241 ENLFDHLADP 250
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 120/242 (49%), Gaps = 56/242 (23%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 33 AGVHGEARVTMRK----ATTKKVSASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 87
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 88 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 147
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 148 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 199
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 200 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 251
Query: 235 NL 236
NL
Sbjct: 252 NL 253
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 118/260 (45%), Gaps = 52/260 (20%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAADPN-------RPLWF---PGSTPPEWLDGSLPGDFG 85
++L+ +K A + A A + RP WF P PP +L G LPGD+G
Sbjct: 80 RRLEEKKKEAVENSSRFKAKAQEARNDSKWYGKERPRWFGPIPYDYPP-YLTGELPGDYG 138
Query: 86 FDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAG--- 127
FD GL EI+H RWAML A G IPE+L G + P W+ G
Sbjct: 139 FDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSK 198
Query: 128 ----ELEYF----------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
L+Y + I +++ + E R+ I + + P
Sbjct: 199 LQGETLDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGI--------EALEPLGI 250
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
D+ YPGG FDPL S P ++L+ KEIKNGRLAM+A +G + Q +TG GP+
Sbjct: 251 YLPGDINYPGGTLFDPLNL-SEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPV 309
Query: 234 DNLIAHLADPGHATVFAAFT 253
NL+ H++DP H + A
Sbjct: 310 QNLVDHVSDPLHNNLLAMLQ 329
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 106/212 (50%), Gaps = 45/212 (21%)
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
+PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 58 SPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 117
Query: 118 -LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 118 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPL 175
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G
Sbjct: 176 GEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGF 221
Query: 222 WFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL H+ADP + +A T
Sbjct: 222 FVQAIVTGKGPLENLADHIADPVNNNAWAYAT 253
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 121/259 (46%), Gaps = 61/259 (23%)
Query: 29 KASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------P 73
++SF G LK LRK G + G R + P + +W+ P P
Sbjct: 8 QSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTP-QSIWYGPDRPKYLGPFSENTP 66
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN 119
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 67 SYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFG 126
Query: 120 TPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
W+ AG L+Y + ++ V+++ +G+ EG R +
Sbjct: 127 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYR---------IG 177
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
P+ G D YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q
Sbjct: 178 GGPLG-----EGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQ 230
Query: 225 HIYTGTGPIDNLIAHLADP 243
I TG GPI+NL HLADP
Sbjct: 231 AIVTGKGPIENLFDHLADP 249
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 121/259 (46%), Gaps = 61/259 (23%)
Query: 29 KASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------P 73
++SF G LK LRK G + G R + P + +W+ P P
Sbjct: 8 QSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTP-QSIWYGPDRPKYLGPFSENTP 66
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN 119
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 67 SYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFG 126
Query: 120 TPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
W+ AG L+Y + ++ V+++ +G+ EG R +
Sbjct: 127 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYR---------IG 177
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
P+ G D YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q
Sbjct: 178 GGPLG-----EGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQ 230
Query: 225 HIYTGTGPIDNLIAHLADP 243
I TG GPI+NL HLADP
Sbjct: 231 AIVTGKGPIENLFDHLADP 249
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 112/239 (46%), Gaps = 45/239 (18%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-- 91
G K +RK+ T S D + L PP +L G PGD+G+D GL
Sbjct: 1 GASKFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYF 132
E++H RWAMLGA G PELL + G+ W+ AG L+Y
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 133 TDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
+ + ++ V++I +G EG R A P DP+ YPGG
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGEVVDPL------------YPGG 166
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 167 S-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 223
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 121/259 (46%), Gaps = 61/259 (23%)
Query: 29 KASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------P 73
++SF G LK LRK G + G R + P + +W+ P P
Sbjct: 8 QSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTP-QSIWYGPDRPKYLGPFSENTP 66
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN 119
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 67 SYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFG 126
Query: 120 TPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
W+ AG L+Y + ++ V+++ +G+ EG R +
Sbjct: 127 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYR---------IG 177
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
P+ G D YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q
Sbjct: 178 GGPLG-----EGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQ 230
Query: 225 HIYTGTGPIDNLIAHLADP 243
I TG GPI+NL HLADP
Sbjct: 231 AIVTGKGPIENLFDHLADP 249
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 108/214 (50%), Gaps = 49/214 (22%)
Query: 62 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
+RPL+ F GS PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 54 DRPLYLGPFSGS-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALG 112
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL K G+ W+ AG L+Y + + ++ +++ +G
Sbjct: 113 CVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAV 172
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DP+ YPGG FDPLG PE EL+ KE+K
Sbjct: 173 EGYRVAG--GPLGEVEDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELK 216
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GPI+NL HLADP
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 250
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 106/229 (46%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 41 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 100
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL+K G+ W+ AG L+Y + ++I +G
Sbjct: 101 GCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGL 160
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 161 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 204
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GPI+NL HLA+P FA FTP
Sbjct: 205 KNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 253
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG + F+D +L + I WA +I G V + N
Sbjct: 127 GEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGN 180
Query: 172 NKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 181 GPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 238
Query: 231 GPIDNLIAHLADP 243
GPI+NL HLADP
Sbjct: 239 GPIENLADHLADP 251
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 100/194 (51%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 44 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 103
Query: 118 LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG + F+D +L + I WA +I G V +
Sbjct: 104 FGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAG 157
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
N L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 158 NGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 215
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 216 KGPLENLADHLADP 229
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 120/243 (49%), Gaps = 56/243 (23%)
Query: 35 GKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPL 89
G ++ +RK G R+ SV + P+R + F G +P +L G PGD+G+D
Sbjct: 27 GSRVAMRKTG-----RASSVGGGSPWYGPDRVKYLGPFSGESP-SYLTGEYPGDYGWDTA 80
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------- 128
GL E++H RWAMLGA G PELL+K GI W+ AG
Sbjct: 81 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGG 140
Query: 129 LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 141 LDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIAG--GPLGEVTDPI------------ 186
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HL
Sbjct: 187 YPGGS-FDPLGLAE-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHL 244
Query: 241 ADP 243
ADP
Sbjct: 245 ADP 247
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 114/248 (45%), Gaps = 34/248 (13%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAAD-------PNRPLWF-PGSTP-PEWLDGSLPGDFGF 86
++L+ RK A + A A RP W P S P +L G LPGD+GF
Sbjct: 87 RRLEERKKLAVQQSSKFKALAQKARKESFWYGEERPRWLGPISYQYPTYLSGELPGDYGF 146
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGELEY 131
D GL EI+H RWAML A G IPE+L G + P W+ G +
Sbjct: 147 DVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKL 206
Query: 132 FTDTTTLFIVE---------MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYP 182
DT + ++ I + + + + P D+ YP
Sbjct: 207 KGDTLDYLGIPGLHFAGGQGVLVIAFCQAILMVGPEYARYCGIEALEPLGIYLPGDINYP 266
Query: 183 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 242
GG+ FDPL S P +EL+ KEIKNGRLAM+A +G + Q TG GP++NL+ H++D
Sbjct: 267 GGILFDPLNL-SKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVEHISD 325
Query: 243 PGHATVFA 250
P H +F+
Sbjct: 326 PLHNNLFS 333
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 117/237 (49%), Gaps = 49/237 (20%)
Query: 49 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------E 92
T+ VS + P+R + F G PP +L G PGD+G+D GL E
Sbjct: 38 TKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 96
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT-------- 136
++H RWAMLGA G PELL++ G+ W+ AG L+Y + +
Sbjct: 97 VIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSIL 156
Query: 137 TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 196
++ ++I +G EG R A P TDPI YPGG FDPLG
Sbjct: 157 AIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGS-FDPLGLAD-D 200
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 201 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 257
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 101/194 (52%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 66 PPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELLARNGVK 125
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG L+Y + + + ++ I WA +I G V +
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVPG 179
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
+ L D+ YPGG FDPLG + P EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 180 DGPLGEAEDLLYPGGS-FDPLGLAT-DPVAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 238 KGPLENLADHLADP 251
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG + F+D +L + I WA +I G V + N
Sbjct: 127 GEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGN 180
Query: 172 NKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 181 GPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 238
Query: 231 GPIDNLIAHLADP 243
GPI+NL HLADP
Sbjct: 239 GPIENLADHLADP 251
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 122/250 (48%), Gaps = 53/250 (21%)
Query: 40 LRKNGATAGTRSVSVSAAAADP----NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL- 91
+R NG +S +A++ P +R + F G PP +L G PGD+G+D GL
Sbjct: 27 VRSNGRVTMRKSGKPAASSGSPWYGPDRVKYLGPFSGE-PPSYLKGEFPGDYGWDTAGLS 85
Query: 92 ------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEY 131
E++H RWAMLGA G PELL++ G+ W+ AG L+Y
Sbjct: 86 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDY 145
Query: 132 FTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 183
+ + ++ +++ +G EG R A P TDPI YPG
Sbjct: 146 LGNPSLIHAQSILAIWASQVVLMGAVEGYRIAG--GPLGEITDPI------------YPG 191
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
G FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 192 GS-FDPLGLAD-DPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
Query: 244 GHATVFAAFT 253
+ +A T
Sbjct: 250 VNNNAWAYAT 259
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 112/239 (46%), Gaps = 45/239 (18%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-- 91
G K +RK+ T S D + L PP +L G PGD+G+D GL
Sbjct: 1 GASKFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYF 132
E++H RWAMLGA G PELL + G+ W+ AG L+Y
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 133 TDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
+ + ++ V++I +G EG R A P DP+ YPGG
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGEVVDPL------------YPGG 166
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 167 S-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 223
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 131/265 (49%), Gaps = 54/265 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---F 67
A+SSP+ + V + LGG + +RK +A T+ V+ S + P+R + F
Sbjct: 7 ALSSPT-LTGKPVKLNPSSQELGGARFTMRK---SATTKKVASSGSPWYGPDRVKYLGPF 62
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G +P +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 SGESP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSR 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-- 179
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKELKNGRLAMFSM 225
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HL+DP
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLSDP 250
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 135/277 (48%), Gaps = 48/277 (17%)
Query: 13 ISSPSSQKSRSVAGATKASFLGGKKL---KLRKNGATAGTRSVSVSAAA-ADPNRPLW-- 66
+S+ + SR+VAG K FLG + LR A A +S+S P+R +
Sbjct: 2 VSTLMAPASRAVAG--KTPFLGARPAVASPLRDVAAAASNGRISMSNELWYGPDRVKYLG 59
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F TP +L G PGD+G+D GL E++H RWAMLGA G PE+L
Sbjct: 60 PFSAQTP-SYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVL 118
Query: 113 TK-LGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
K +G+ P W+ AG L+Y + + ++ + ++ ++ G V
Sbjct: 119 QKWVGVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQ------VLLMGLV 172
Query: 164 NTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
F N L G G YPGG +FDPLG P EL+ KEIKNGRLAM ++ G
Sbjct: 173 EG---FRINGLDGVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFG 228
Query: 221 AWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
+ Q I TG GP++NL HL DP +A VFA F P
Sbjct: 229 FFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAP 265
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 119/250 (47%), Gaps = 39/250 (15%)
Query: 33 LGG---KKLKLRKNGATAGTRSVSVSAAAADPN-------RPLWFPGSTP---PEWLDGS 79
LGG ++L+ +KN A A + A A + RP W G P P++L G
Sbjct: 78 LGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWL-GPLPYDYPKYLTGE 136
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWY 124
LPGD+GFD GL EI+H RWAML + G +PE+L G + P W+
Sbjct: 137 LPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWW 196
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV---------NTDPIFPNNKLT 175
G + DT + + + ++G I + + + + P
Sbjct: 197 RVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYL 256
Query: 176 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
D+ YPGG+ FDPL S +EL+ KEIKNGRLAM+A +G + Q TG GP+ N
Sbjct: 257 PGDINYPGGVLFDPLNL-SKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQN 315
Query: 236 LIAHLADPGH 245
L+ H+ADP H
Sbjct: 316 LLDHIADPFH 325
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 123/253 (48%), Gaps = 53/253 (20%)
Query: 33 LGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPL 89
LG ++ +RK +++VS + P+R + F G PP +L G PGD+G+D
Sbjct: 8 LGVGRVSMRKTA----SKTVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTA 62
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------- 128
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 63 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEACWFKAGSQIFSEGG 122
Query: 129 LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 123 LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------ 168
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HL
Sbjct: 169 YPGGS-FDPLALAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 226
Query: 241 ADPGHATVFAAFT 253
ADP + +A T
Sbjct: 227 ADPVNNNAWAYAT 239
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 101/201 (50%), Gaps = 45/201 (22%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 60 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 119
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 120 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLG 177
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 178 EIVDPL------------YPGG-SFDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFF 223
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 224 VQAIVTGKGPLENLADHLADP 244
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 99/212 (46%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P LDGS PGDFGFDPL L E++HCRWAML G+ IPE L
Sbjct: 50 WMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL 109
Query: 113 TKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W + Y + VE + I + E +R N
Sbjct: 110 GLGNWVEAQKWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR----------N 159
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+P K YPGG FDPLG+ S P K KE + KEIKNGRLA+LA +G Q
Sbjct: 160 GEPDPEKRK-------YPGGA-FDPLGF-SKDPAKFKEYKVKEIKNGRLALLAFVGFCVQ 210
Query: 225 -HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
GTGP++NL HL+DP H + P+
Sbjct: 211 ASANPGTGPLENLATHLSDPWHKNIAEIIIPR 242
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 122/244 (50%), Gaps = 53/244 (21%)
Query: 33 LGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
LG K +RK GAT T+ V+ S + P+R + F G PP +L G PGD+G+D
Sbjct: 27 LGVAKFTMRK-GAT--TKKVASSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDT 82
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------ 128
GL E++H RWAMLGA G PELL++ G+ W+ AG
Sbjct: 83 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 142
Query: 129 -LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L+Y + + ++ ++I +G EG R A P DP+
Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPL----------- 189
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 190 -YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 246
Query: 240 LADP 243
LADP
Sbjct: 247 LADP 250
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 131/265 (49%), Gaps = 54/265 (20%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---F 67
A+SSP+ + V + LGG + +RK +A T+ V+ S + P+R + F
Sbjct: 7 ALSSPT-LTGKPVKLNPSSQELGGARFTMRK---SATTKKVASSGSPWYGPDRVKYLGPF 62
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G +P +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 63 SGESP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSR 121
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG-- 179
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 180 GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSM 225
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HL+DP
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLSDP 250
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 119/261 (45%), Gaps = 41/261 (15%)
Query: 13 ISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP 72
+++ S+ +S S+AG T L ++ +L K TA R + P +W+ P
Sbjct: 1 MATASAIQSSSLAGQT---LLRPQQNELVKKVGTAQARITMRRTVRSAPES-IWYGPDRP 56
Query: 73 ----------PEWLDGSLPGDFGFDPLG-------------LEIVHCRWAMLGAAGIFIP 109
P +L G PGD+G+D LE++HCRWAMLGA G P
Sbjct: 57 KYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFP 116
Query: 110 ELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGC 162
ELL K G+ W+ AG + + L + I WA ++ G
Sbjct: 117 ELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA-----CQVVLMGL 171
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+ + G D PGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 172 IEGYRVGGGTLGEGLDPLLPGGA-FDPLGLAD-DPEACAELKVKEIKNGRLAMFSMFGFF 229
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GPI+NL HLADP
Sbjct: 230 VQAIVTGKGPIENLYDHLADP 250
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 103/201 (51%), Gaps = 45/201 (22%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL++ G+
Sbjct: 38 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVK 97
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 98 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGG----- 152
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
P K+TG YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 153 -------PLGKVTGPL--YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFF 201
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 202 VQAIVTGKGPLENLADHLADP 222
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 121/250 (48%), Gaps = 42/250 (16%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPE 74
+++F+G LK +RK G G S+ + +A P+RP + P
Sbjct: 7 QQSAFVGQTLLKQQNELVRKVGGNGGRFSMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 66
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 67 YLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGE 126
Query: 121 PSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
W+ AG L+Y + + ++ I WA +I+ V P+
Sbjct: 127 AVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAI-WACQVVLMGLIEGYRVGGGPLG---- 181
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI
Sbjct: 182 -EGLDKIYPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 238
Query: 234 DNLIAHLADP 243
+NL HLADP
Sbjct: 239 ENLSDHLADP 248
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 119/248 (47%), Gaps = 51/248 (20%)
Query: 28 TKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDF 84
+ + G ++ +RK A + S + P+R + F G +P +L G PGD+
Sbjct: 23 SSSEITGNGRVTMRKTATKA--KPASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDY 79
Query: 85 GFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-- 128
G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 139
Query: 129 -----LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 175
L+Y + + ++ +++ +G EG R A P DP+
Sbjct: 140 FSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPL------- 190
Query: 176 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++N
Sbjct: 191 -----YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Query: 236 LIAHLADP 243
L HLADP
Sbjct: 244 LADHLADP 251
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 106/229 (46%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL+K G+ W+ AG L+Y + ++I +G
Sbjct: 100 GCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 160 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GPI+NL HLA+P FA FTP
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 252
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 106/216 (49%), Gaps = 49/216 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R LW F + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 131 PDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGAL 190
Query: 105 GIFIPELLTKL-GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIG 147
G PELL K G+ + P W+ AG L+Y + + + ++I +G
Sbjct: 191 GCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMG 250
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R VN P G D PGG FDPLG P+ EL+ KE
Sbjct: 251 GAEAYR---------VNGGPAG-----EGLDAINPGGA-FDPLGLAD-DPDTFAELKVKE 294
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM +++G + Q I TG GP++N H+ADP
Sbjct: 295 IKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADP 330
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 108/220 (49%), Gaps = 45/220 (20%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
++ L + G R V+ ++A RP W PG PP L G+L GD GFDPLGL
Sbjct: 7 QVALGRRAPVRGQRVVAAASA-----RPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEG 61
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEM 143
E + RWAM+ AGI ELL G+ TP+W+ AG EY L +E
Sbjct: 62 RLKWYAEAEKTNGRWAMMAVAGILGQELL---GV--TPAWWEAGAKEYDIPAQALTPIEF 116
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
I +G+ E +R+ K TGT G+ FDP G S S +
Sbjct: 117 IVMGFLEIKRYQGF---------------KQTGTS-GFINSFPFDPAGMNSPS------M 154
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
TKE+KNGRLAM+A +G Q + T T PI+ L AHLADP
Sbjct: 155 ATKEVKNGRLAMVAFIGFCVQALATRTQPIEGLTAHLADP 194
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 129/272 (47%), Gaps = 49/272 (18%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSA-AAADPNRPLWFPGS 70
A+SSP++ ++VA A G ++ +RK+ A + S S AD L
Sbjct: 7 ALSSPAALAGKAVA---NAKVFGEGRVTMRKSAAKPKPAAASGSPWYGADRVLYLGPLSG 63
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
PP +L G GD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 64 EPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 118 -LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + + +++F+G EG R A P
Sbjct: 124 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVFMGAVEGYRVAG--GPL 181
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP++P L DPLG PE EL+ KEIKNGRLAML++ G
Sbjct: 182 GEVVDPLYPGGSL-------------DPLGLAD-DPEAFAELKVKEIKNGRLAMLSMFGF 227
Query: 222 WFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++N+ HLADP + +A T
Sbjct: 228 FVQAIVTGKGPLENITDHLADPVNNNAWAYAT 259
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 106/229 (46%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL+K G+ W+ AG L+Y + ++I +G
Sbjct: 100 GCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 160 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GPI+NL HLA+P FA FTP
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 252
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 117/257 (45%), Gaps = 52/257 (20%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAADPN-------RPLWF---PGSTPPEWLDGSLPGDFG 85
++L+ +K A + A A + RP WF P PP +L G LPGD+G
Sbjct: 77 RRLEEKKKEAVENSSRFKSKAQEARNDSKWYGKERPRWFGPIPYDYPP-YLTGELPGDYG 135
Query: 86 FDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAG--- 127
FD GL EI+H RWAML A G IPE+ G + P W+ G
Sbjct: 136 FDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSK 195
Query: 128 ----ELEYF----------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
LEY + I +++ + E R+ I + + P
Sbjct: 196 LQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGI--------EALEPLGI 247
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
D+ YPGG FDPL S P ++L+ KEIKNGRLAM+A +G + Q +TG GP+
Sbjct: 248 YLPGDINYPGGTLFDPLNL-SEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPV 306
Query: 234 DNLIAHLADPGHATVFA 250
NL+ H++DP H + A
Sbjct: 307 QNLVDHVSDPLHNNLIA 323
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 111/251 (44%), Gaps = 54/251 (21%)
Query: 42 KNGATAGTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL----- 91
K G + VSV AA P+R W + P +L G PGD+G+D GL
Sbjct: 15 KTALVKGNKRVSVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPE 74
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLG--ILNTPSWYTAGE-------LEYF-- 132
E++H RWAMLGA G PE+L K G W+ AG L+Y
Sbjct: 75 TFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGS 134
Query: 133 ------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLW 186
+ I ++I +G EG R P DP++P
Sbjct: 135 PALIHAQSIGAIVISQVILMGLIEGYRVNG--GPAGEGLDPLYPGES------------- 179
Query: 187 FDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHA 246
FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++N H+ADP A
Sbjct: 180 FDPLGLAD-DPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTA 238
Query: 247 TVFA---AFTP 254
F+ FTP
Sbjct: 239 NAFSYATKFTP 249
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 106/229 (46%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL+K G+ W+ AG L+Y + ++I +G
Sbjct: 100 GCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 160 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GPI+NL HLA+P FA FTP
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 252
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 106/216 (49%), Gaps = 31/216 (14%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 53 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 112
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PELL K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 113 CVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WAFQVVLMGL 171
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
I+ V P+ G D YPGG FDPLG PE EL+ KE+KNGRLAM +
Sbjct: 172 IEGYRVGGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKELKNGRLAMFS 224
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ G + Q I TG GPI+NL HLADP + +A T
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHLADPANNNAWAYAT 260
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 112/244 (45%), Gaps = 50/244 (20%)
Query: 45 ATAGTRSVS-VSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
A G+R V+ S P+R W F P +L G PGD+G+D GL
Sbjct: 17 AVRGSRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFAR 76
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILN---TPSWYTAG---------------EL 129
E++H RWAMLGA G PELL G + W+ AG L
Sbjct: 77 YREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSL 136
Query: 130 EYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ + + +++ +G AE R+A G V T D YPGG FDP
Sbjct: 137 IHAQSIVAVLLTQLVIMGAAEAYRYA---GEGPVETS----------GDSLYPGGA-FDP 182
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
LG P+ + EL+ KE+KNGRLAM ++ G + Q + TG P++NL HLADP A F
Sbjct: 183 LGLAD-DPDTLAELKVKELKNGRLAMFSMFGFFVQALITGKSPLENLADHLADPSTANGF 241
Query: 250 AAFT 253
A T
Sbjct: 242 AVAT 245
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 119/241 (49%), Gaps = 53/241 (21%)
Query: 39 KLRKNGATAGTRSVSVSAAAADP----NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL 91
++ NG ++V+ SA ++ P +R + F G +P +L G PGD+G+D GL
Sbjct: 10 EISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGL 68
Query: 92 -------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LE 130
E++HCRWAMLGA G PELL + G+ W+ AG L+
Sbjct: 69 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLD 128
Query: 131 YFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYP 182
Y + + ++ +++ +G EG R A P DP+ YP
Sbjct: 129 YLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPL------------YP 174
Query: 183 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 242
GG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLAD
Sbjct: 175 GGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 232
Query: 243 P 243
P
Sbjct: 233 P 233
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 106/211 (50%), Gaps = 45/211 (21%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 63 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNGVK 122
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 123 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 180
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 181 EVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFF 226
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
Q I TG GP++NL HLADP + +A T
Sbjct: 227 VQAIVTGKGPLENLADHLADPVNNNAWAYAT 257
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 128/265 (48%), Gaps = 62/265 (23%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKN-GATAGTRSVSVSAAAADPNRPLW---F 67
A+ P S+ SR V G ++ +RK ++G+ S+ A +RP + F
Sbjct: 17 ALLKPVSELSRKVNA-------GEARVTMRKTVSKSSGSDSIWYGA-----DRPKFLGPF 64
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G TP +L+G GD+G+D GL E++H RWAMLGA G PELL K
Sbjct: 65 SGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAK 123
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 124 SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG-- 181
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P TDPI YPGG FDPLG P+ EL+ KEIKNGRLAM ++
Sbjct: 182 GPLGDVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSM 227
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 228 FGFFVQAIVTGKGPLENLNDHLADP 252
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 125/262 (47%), Gaps = 51/262 (19%)
Query: 13 ISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GS 70
+SSP+ ++V ++ G ++ +RK GA V+ + P+R L+
Sbjct: 8 LSSPAF-AGKAVKNMPSSALFGDARMTMRKTGAKP---KVASGSPWYGPDRVLYLGPLSG 63
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
PP +L G GD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 64 EPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 118 -LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 124 QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPL 181
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G
Sbjct: 182 GEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGF 227
Query: 222 WFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL HLADP
Sbjct: 228 FVQAIVTGKGPLENLADHLADP 249
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 121/253 (47%), Gaps = 41/253 (16%)
Query: 33 LGGKKLKLRKNGATAG--------TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLP 81
GK +KL + G T+ VS + P+R + F G PP +L G P
Sbjct: 14 FAGKAVKLAPSAPEVGRASMRKTVTKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFP 72
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 127
GD+G+D GL E++H RWAMLGA GI PE L++ G+ W+ AG
Sbjct: 73 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEPLSRNGVKFGEAVWFKAG 132
Query: 128 E-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
L+Y + + + ++ I WA +I G V I TD
Sbjct: 133 SQIFSEGGLDYLGNPSLIHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVTDPT 186
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG FDPLG PE EL+ KE+KNGRLAM +V G + Q I TG GP++NL HL
Sbjct: 187 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPLENLADHL 244
Query: 241 ADPGHATVFAAFT 253
ADP + +A T
Sbjct: 245 ADPVNNNAWAYAT 257
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 125/267 (46%), Gaps = 51/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SS S + + G K+ +RK A + +S + P+R +
Sbjct: 4 ATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKA--KPLSSGSPWYGPDRVKYLG 61
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G +P +L G PGD+G+D GL E++HCRWAMLGA G PELL
Sbjct: 62 PFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ K IKNGRLAM
Sbjct: 181 --GPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 120/248 (48%), Gaps = 51/248 (20%)
Query: 28 TKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDF 84
+ + G ++ +RK+ A A + S + P+R + F G P +L G PGD+
Sbjct: 23 SSSEITGNGRITMRKSVAKA--KPASSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDY 79
Query: 85 GFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-- 128
G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 139
Query: 129 -----LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 175
L+Y + + ++ +++ +G EG R A P DP+
Sbjct: 140 FSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPL------- 190
Query: 176 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++N
Sbjct: 191 -----YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Query: 236 LIAHLADP 243
L HLADP
Sbjct: 244 LADHLADP 251
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 106/211 (50%), Gaps = 45/211 (21%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 63 PPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAMLGALGCVFPELLSRNGVK 122
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 123 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG 180
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 181 EVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFF 226
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
Q I TG GP++NL HLADP + +A T
Sbjct: 227 VQAIVTGKGPLENLADHLADPVNNNAWAYAT 257
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 100/194 (51%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
Query: 118 LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG + F+D +L + I WA +I G V +
Sbjct: 125 FGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAG 178
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
+ L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 179 DGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 237 KGPLENLADHLADP 250
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 100/200 (50%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 185 VVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 231 QAIVTGKGPLENLADHLADP 250
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 106/216 (49%), Gaps = 49/216 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R LW F + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 118 PDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGAL 177
Query: 105 GIFIPELLTKL-GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIG 147
G PELL K G+ + P W+ AG L+Y + + + ++I +G
Sbjct: 178 GCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMG 237
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R VN P G D PGG FDPLG P+ EL+ KE
Sbjct: 238 GAEAYR---------VNGGPAG-----EGLDAINPGGA-FDPLGLAD-DPDTFAELKVKE 281
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM +++G + Q I TG GP++N H+ADP
Sbjct: 282 IKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADP 317
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 120/242 (49%), Gaps = 56/242 (23%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 12 AGVHGEARVTMRK----ATTKKVSASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 66
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 67 YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 126
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 127 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 178
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 179 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 230
Query: 235 NL 236
NL
Sbjct: 231 NL 232
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 120/260 (46%), Gaps = 61/260 (23%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G + R+ + P + +W+ P
Sbjct: 7 QQSAFAGQTALKQVNEFVRKTGGSGKGRTNMRRTVKSAP-QSIWYGPDRPKYLGPFSDQI 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA GI PE+L K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ V+++ +G+ EG R P
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DPI YPGG FDPLG P+ EL+ KE+KNGRLAM +V G +
Sbjct: 184 GLDPI------------YPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSVFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GPI NL H+ADP
Sbjct: 230 QAIVTGKGPIQNLYDHVADP 249
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 107/214 (50%), Gaps = 49/214 (22%)
Query: 62 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
+RP W F G TP +L+G GD+G+D GL E++H RWAMLGA G
Sbjct: 54 DRPKWLGPFSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALG 112
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL K G+ W+ AG L+Y + + ++ ++I +G
Sbjct: 113 CLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAV 172
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P TDPI YPGG FDPLG P+ EL+ KEIK
Sbjct: 173 EGYRVAG--GPLGDVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVKEIK 216
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 250
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 123/264 (46%), Gaps = 64/264 (24%)
Query: 35 GKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP-------------PEWLDGSLP 81
GK +KL + G V++ A + P P P P +L G P
Sbjct: 15 GKAIKLSPSTQDIGVGRVTMRKATTKKSVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFP 74
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 127
GD+G+D GL E++H RWAMLGA G PELL++ G+ W+ AG
Sbjct: 75 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG 134
Query: 128 E-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
L+Y + + ++ V++I +G EG R A PG V DP+
Sbjct: 135 SQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG-PPGEV-VDPL---- 188
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP
Sbjct: 189 --------YPGGS-FDPLGLAE-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 233 IDNLIAHLADP------GHATVFA 250
I+NL HLADP +AT FA
Sbjct: 239 IENLADHLADPVNNNAWAYATNFA 262
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 100/194 (51%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVE 124
Query: 118 LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG + F+D +L + I WA +I G V +
Sbjct: 125 FGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAG 178
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
+ L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 179 DGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 237 KGPLENLADHLADP 250
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 106/212 (50%), Gaps = 44/212 (20%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 68 PDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLG 127
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAG-------ELEYFTDTTTLFIVEMIFIGWAE--G 151
AAG IPE K G P W+ G L YF ++ + ++ + G
Sbjct: 128 AAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGG 187
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ II N L D +PGG FDPLG S P++ L+ KEIKNG
Sbjct: 188 AEYYRII-------------NGLDLEDKLHPGG-PFDPLGLAS-DPDQAALLKVKEIKNG 232
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
RLAM +++G + Q TG GP++NL HL+DP
Sbjct: 233 RLAMFSMLGFFIQAYVTGEGPVENLSKHLSDP 264
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P WL LPG++GFDPL L E++H RWAMLG AG ELL
Sbjct: 39 WLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGALAVELL 98
Query: 113 TKLGILNTPSW-YTAGELEYFT-----DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
+ P W T G+ +F D TL E + + AEG+R
Sbjct: 99 GYGNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVAMAAAEGQR------------- 145
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
N G V YPGG FDPLG+ S K EL+ KEIKNGRLAM+A +G QH
Sbjct: 146 -----NDAGG--VIYPGGA-FDPLGFAKDS-SKAGELKLKEIKNGRLAMVAFLGFIAQHA 196
Query: 227 YTGTGPIDNLIAHLADP 243
TG GP+ L HLA+P
Sbjct: 197 ATGKGPLAALGEHLANP 213
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 123/260 (47%), Gaps = 62/260 (23%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G G S+ + +A + +W+ P
Sbjct: 7 QQSAFTGQTALKNRDELVRKVGVVGGRVSMRRTVKSAP--QSIWYGADRPKYLGPFSEQT 64
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL+K G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGVKF 124
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ V+++ +G+ EG R +
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYR---------I 175
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
P+ G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G +
Sbjct: 176 GGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFV 228
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 229 QAIVTGKGPVENLYDHLADP 248
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 128/264 (48%), Gaps = 54/264 (20%)
Query: 14 SSPSSQKSRSVAGA-TKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FP 68
+S S S ++AG K G ++ +RK TA V+ S + P+R + F
Sbjct: 3 ASTMSISSTAMAGTPIKVGSFGEGRITMRK---TAAKPKVAASGSPWYGPDRVKYLGPFS 59
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 60 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 118
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ V+++ +G EG R A
Sbjct: 119 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--G 176
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 177 PLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 222
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 223 GFFVQAIVTGKGPLENLADHLADP 246
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 119/243 (48%), Gaps = 53/243 (21%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPL 89
G K +RK A T+ V+ S + P+R + F G PP +L G PGD+G+D
Sbjct: 1 GASKFTMRK---AATTKKVASSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTA 56
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------- 128
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 57 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 116
Query: 129 LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
L+Y + + ++ V++I +G EG R A P DP+
Sbjct: 117 LDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGEVVDPL------------ 162
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HL
Sbjct: 163 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 220
Query: 241 ADP 243
ADP
Sbjct: 221 ADP 223
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 119/260 (45%), Gaps = 61/260 (23%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK GA G R + P + +W+ P
Sbjct: 7 QQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAP-QSIWYGPDRPKYLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ +++ +G+ EG R P
Sbjct: 126 GESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DPI YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G +
Sbjct: 184 GLDPI------------YPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GPI+NL H+ADP
Sbjct: 230 QAIVTGKGPIENLFDHVADP 249
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 124/263 (47%), Gaps = 51/263 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--G 69
A+SSP+ ++V + G ++ +RK GA S S P+R L+
Sbjct: 7 ALSSPAFA-GKAVKNVPSSGLFGEARMTMRKTGAKPKAASGS---PWYGPDRVLYLGPLS 62
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
PP +L G GD+G+D GL E++H RWAMLGA G PELL + G
Sbjct: 63 GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 122
Query: 117 I-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKP 160
+ W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 123 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GP 180
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G
Sbjct: 181 LGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFG 226
Query: 221 AWFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL HLADP
Sbjct: 227 FFVQAIVTGKGPLENLADHLADP 249
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 100/194 (51%), Gaps = 30/194 (15%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 123
Query: 118 LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG + F+D +L + I WA +I G V +
Sbjct: 124 FGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAG 177
Query: 171 NNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
+ L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 178 DGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 230 TGPIDNLIAHLADP 243
GP++NL HLADP
Sbjct: 236 KGPLENLADHLADP 249
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 106/229 (46%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL+K G+ W+ AG L+Y + ++I +G
Sbjct: 100 GCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 160 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GPI+NL HLA+P FA FTP
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKFTP 252
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 98/197 (49%), Gaps = 39/197 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P +LDG LPG FGFDP GL E+VH RWAM G AG ELL
Sbjct: 37 WLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELL 95
Query: 113 TKLGILNTPSWYTAGELEYFT------DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
+ P W G + + +TL +E + I AE +R N +
Sbjct: 96 GQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIAGAEAQR----------NAE 145
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
P K YPGG FDPLG+ S + ++E + KE+KNGRLAMLA +G QH
Sbjct: 146 PDAEKRK-------YPGGA-FDPLGFSKDS-KVLEENKLKELKNGRLAMLAFVGFIAQHA 196
Query: 227 YTGTGPIDNLIAHLADP 243
TG GP++ L HLADP
Sbjct: 197 ATGKGPLEALKLHLADP 213
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 108/220 (49%), Gaps = 45/220 (20%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
++ L + G R V+ ++A RP W PG PP L G+L GD GFDPLGL
Sbjct: 7 QVALGRRAPVRGQRVVAAASA-----RPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEG 61
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEM 143
E + RWAM+ AGI ELL G+ TP+W+ AG EY L +E
Sbjct: 62 RLKWYAEAEKTNGRWAMMAVAGILGQELL---GV--TPAWWEAGAKEYDIPAQALTPIEF 116
Query: 144 IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKEL 203
I +G+ E +R+ K TGT G+ FDP G S S +
Sbjct: 117 IVMGFLEIKRYQGF---------------KQTGTS-GFINSFPFDPAGMNSPS------M 154
Query: 204 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
TKE+KNGRLAM+A +G Q + T T PI+ L AHLADP
Sbjct: 155 ATKEVKNGRLAMVAFIGFCVQALATRTQPIEGLTAHLADP 194
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 105/213 (49%), Gaps = 44/213 (20%)
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
S P +L+G PGD+G+D GL E++H RWAMLGA G PELL++ G
Sbjct: 9 SATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNG 68
Query: 117 I-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKP 160
P W+ AG L+Y V++I +G AE R A P
Sbjct: 69 FTFQEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAAGS-AP 127
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
G + G D YPGG FDPL + S P+ + EL+ KEIKNGRLAM ++ G
Sbjct: 128 G------------VDGLDKLYPGGP-FDPLEFAS-DPDTLAELKVKEIKNGRLAMFSMFG 173
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ Q I TG GP++NL HLA P FAA T
Sbjct: 174 FFVQAIVTGKGPLENLNDHLASPYANNGFAAAT 206
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 122/247 (49%), Gaps = 56/247 (22%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK+ T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 28 AGVHGEARVTMRKSS----TKKVSASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 82
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 83 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 142
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEITDPI------ 194
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI+
Sbjct: 195 ------YPGGS-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGKGPIE 246
Query: 235 NLIAHLA 241
NL HLA
Sbjct: 247 NLADHLA 253
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 99/192 (51%), Gaps = 29/192 (15%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PE+L+K G+
Sbjct: 38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTF 97
Query: 119 NTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG L+Y + + ++ I WA + ++ G V +
Sbjct: 98 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----SQVVLMGFVEGYRVGGG 151
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG G
Sbjct: 152 PLGEGLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 209
Query: 232 PIDNLIAHLADP 243
PI+NL H+ADP
Sbjct: 210 PIENLSDHIADP 221
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 104/229 (45%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 43 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 102
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL K G W+ AG L+Y + V++I +G
Sbjct: 103 GCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGL 162
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 163 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 206
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GPI NL HL++P FA FTP
Sbjct: 207 KNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTP 255
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 135/277 (48%), Gaps = 63/277 (22%)
Query: 2 ASVCASPAVAAIS--SPSSQKSRSVAGATKASFLGGKKLKLRKN-GATAGTRSVSVSAAA 58
A+ S A+A S P ++ SR V G +A ++ +R+ +AG+ ++ A
Sbjct: 4 ATAMHSTALAGQSLVKPVNELSRKVLGNVEA------RVTMRRTVSKSAGSDTIWYGA-- 55
Query: 59 ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
+RP + F G TP +L+G GD+G+D GL E++H RWAMLG
Sbjct: 56 ---DRPKFLGPFSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLG 111
Query: 103 AAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFI 146
A G PELL K G+ W+ AG L+Y + + ++ +++ +
Sbjct: 112 ALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 171
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
G EG R A P TDPI YPGG FDPLG P+ EL+ K
Sbjct: 172 GAVEGYRVAG--GPLGEVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVK 215
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
EIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 120/248 (48%), Gaps = 51/248 (20%)
Query: 28 TKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDF 84
+ + G ++ +RK A + S + P+R + F G +P +L G PGD+
Sbjct: 23 SSSEITGNGRVTMRKTATKA--KPASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDY 79
Query: 85 GFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-- 128
G+D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 80 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 139
Query: 129 -----LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 175
L+Y + + ++ +++ +G EG R A P DP+
Sbjct: 140 FSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPL------- 190
Query: 176 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GP++N
Sbjct: 191 -----YPGGS-FDPLG-PADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Query: 236 LIAHLADP 243
L HLADP
Sbjct: 244 LADHLADP 251
>gi|413922345|gb|AFW62277.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 131
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 6/119 (5%)
Query: 99 AMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADII 158
AMLG AG+ IPE+LTK G++N P WY AG+ EYF ++TLF++E I + E RRW DI
Sbjct: 2 AMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIK 61
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
PG VN DPIF + L + GYPG + F+PL + E + KE+ NG L +A
Sbjct: 62 NPGSVNQDPIFKSYSLPPHECGYPGSV-FNPLNFAP-----TLEAKEKELANGELHCIA 114
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 131/273 (47%), Gaps = 58/273 (21%)
Query: 2 ASVCASPAVAAIS--SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA 59
A+ S A+A S P ++ SR V G +A ++ +RK TA S S+ A
Sbjct: 4 ATAMHSTALAGQSLLKPVNELSRKV-GNVEA------RISMRK---TASKSSDSIWYGAD 53
Query: 60 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
P F G TP +L+G GD+G+D GL E++H RWAMLGA G
Sbjct: 54 RPKYLGPFSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGC 112
Query: 107 FIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAE 150
PELL K G+ W+ AG L+Y + + ++ ++I +G E
Sbjct: 113 VTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVE 172
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
G R A P TDPI YPGG FDPLG P+ EL+ KEIKN
Sbjct: 173 GYRVAG--GPLGDVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVKEIKN 216
Query: 211 GRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
GRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 249
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 106/215 (49%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 71 PDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLG 130
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGEL-------EYFTDTTTLFIVEMIFIGW----- 148
AAG IPE L K G P W+ G L YF ++ + ++ +
Sbjct: 131 AAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGG 190
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG + P++ L+ KEI
Sbjct: 191 AEYYRIT----------------NGLEFDDKLHPGG-PFDPLGLAT-DPDQAALLKVKEI 232
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM +++G + Q TG GP +NL AHL+DP
Sbjct: 233 KNGRLAMFSMLGFFIQAYVTGEGPFENLCAHLSDP 267
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 49 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 108
Query: 119 NTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG + F+D +L + I WA +I G V + N
Sbjct: 109 GEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGN 162
Query: 172 NKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 163 GPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 220
Query: 231 GPIDNLIAHLADP 243
GPI+NL HLADP
Sbjct: 221 GPIENLADHLADP 233
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 112/235 (47%), Gaps = 40/235 (17%)
Query: 40 LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLPGDFGFDPL 89
+RK G+ G R+ + P + +W+ P P +L G PGD+G+D
Sbjct: 24 VRKIGSFGGGRATMRRTVKSAP-QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 82
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------- 128
GL E++HCRWAMLGA G PE+L+K G+ W+ AG
Sbjct: 83 GLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG 142
Query: 129 LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 188
L+Y + + ++ I WA +I+ V P+ G D YPGG FD
Sbjct: 143 LDYLGNPNLVHAQSILAI-WACQVVLMGLIEGYRVGGGPLG-----EGLDKIYPGGA-FD 195
Query: 189 PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
PLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL + DP
Sbjct: 196 PLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDQINDP 249
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 123/259 (47%), Gaps = 59/259 (22%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD----------PNRPLW---FPGSTPP 73
A +S L G+ +KL + G VS+ A+ P+R + F G PP
Sbjct: 7 ALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTASKTVTSGSPWYGPDRVKYLGPFSGE-PP 65
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN 119
+ G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 66 SYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 125
Query: 120 TPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 126 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEV 183
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
TDPI YPGG FDPLG PE EL+ KE+K+GRLAM ++ G + Q
Sbjct: 184 TDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKHGRLAMFSMFGFFVQ 229
Query: 225 HIYTGTGPIDNLIAHLADP 243
I TG GP++NL HLADP
Sbjct: 230 AIVTGKGPLENLADHLADP 248
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 123/264 (46%), Gaps = 51/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SS S ++ + G K+ +RK A + S S+ P+R + F
Sbjct: 7 ALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKA--KPASSSSPWYGPDRVKYLGPFS 64
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G P D+G+D GL E++HCRWAMLGA G PEL +
Sbjct: 65 GEAP-SYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARN 123
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
GI W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 124 GIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--G 181
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++
Sbjct: 182 PLGEVIDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMF 227
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 228 GFFVQAIVTGKGPLENLADHLADP 251
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 132/279 (47%), Gaps = 57/279 (20%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA--ADPNRPLW 66
A A+SSP K + T+ S K+R +G + +S + + + P+R +
Sbjct: 2 ATMALSSPFVGKVVPLNPGTEFS------SKVRGDGRISMRKSFAKPSGSPWYGPDRVKY 55
Query: 67 ---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPE 110
F G PP +L G PGD+G+D GL E++HCRWAMLGA G PE
Sbjct: 56 LGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 114
Query: 111 LLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRW 154
LL++ G+ W+ AG L+Y + ++ ++I +G EG R
Sbjct: 115 LLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQVILMGAVEGYRI 174
Query: 155 ADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
P DP+ YPGG FDPLG PE EL+ KEIKNGRLA
Sbjct: 175 GG--GPLGEVIDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLA 218
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
M ++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 219 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 257
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 131/264 (49%), Gaps = 64/264 (24%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
++ P ++ SR V GA +A ++ +RK +AG+ S+ A +RP + F
Sbjct: 16 SLLKPVNELSRRV-GANEA------RVTMRK---SAGSDSIWYGA-----DRPKFLGPFS 60
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G TP +L+G GD+G+D GL E++H RWAMLGA G PELL K
Sbjct: 61 GETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKS 119
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 120 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--G 177
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P TDPI YPGG FDPLG P+ EL+ KEIKNGRLAM ++
Sbjct: 178 PLGEVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSMF 223
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 224 GFFVQAIVTGKGPLENLNDHLADP 247
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 119/252 (47%), Gaps = 45/252 (17%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK ++K G+ G R + P + +W+ P
Sbjct: 7 QQSAFAGSAALKPQNELVKKTGSFTGGRFTMRRTVKSAP-QSIWYGPDRPKYLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLSKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG L+Y + + ++ I WA +I+ V P+
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGLIEGYRVGGGPLG-- 182
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 183 ---EGLDKIYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 232 PIDNLIAHLADP 243
PI+NL HL+DP
Sbjct: 238 PIENLFDHLSDP 249
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 106/212 (50%), Gaps = 44/212 (20%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 71 PDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWAMLG 130
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAG-------ELEYFTDTTTLFIVEMIFIGWAEGR- 152
AAG IPE K G P W+ G L YF ++ + ++ +
Sbjct: 131 AAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGG 190
Query: 153 -RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ II N L D +PGG FDPLG S P++ L+ KEIKNG
Sbjct: 191 AEYYRII-------------NGLDLEDKLHPGG-PFDPLGLAS-DPDQAALLKVKEIKNG 235
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
RLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 236 RLAMFSMLGFFIQAYVTGEGPVENLSAHLSDP 267
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 115/231 (49%), Gaps = 50/231 (21%)
Query: 46 TAGT-RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL---------- 91
TAG ++V S+ P+R + F G +P +L G PGD+G+D GL
Sbjct: 3 TAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKN 61
Query: 92 ---EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT---- 136
E++HCRWAMLGA G PELL + G+ W+ AG L+Y + +
Sbjct: 62 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 121
Query: 137 ----TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 192
++ ++I +G EG R A P DP+ YPGG FDPLG
Sbjct: 122 QSILAIWACQVILMGAVEGYRIAG--GPLGEVVDPL------------YPGGS-FDPLGL 166
Query: 193 GSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 167 AD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 216
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 117/240 (48%), Gaps = 51/240 (21%)
Query: 48 GTRSVSVSAAA--ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL----------- 91
G +SV+ S + P+R L+ F G PP +L G PGD+G+D GL
Sbjct: 5 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNR 63
Query: 92 --EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFT 133
E++H RWAMLGA G PELL + G+ W+ AG +L +
Sbjct: 64 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQ 123
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
++ ++I +G EG R A P TDPI YPGG FDPLG
Sbjct: 124 SILAIWACQVILMGAIEGYRVAG--GPLGEVTDPI------------YPGGN-FDPLGLA 168
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL H+ADP + +A T
Sbjct: 169 D-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVNNNAWAYAT 227
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 111/236 (47%), Gaps = 45/236 (19%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
K +RK+ T S D + L PP +L G PGD+G+D GL
Sbjct: 2 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 61
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDT 135
E++H RWAMLGA G PELL + G+ W+ AG L+Y +
Sbjct: 62 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 121
Query: 136 T--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
+ ++ V++I +G EG R A P DP+ YPGG F
Sbjct: 122 SLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGEVVDPL------------YPGGS-F 166
Query: 188 DPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
DPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 167 DPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 221
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 105/229 (45%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + ++ P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL K G W+ AG L+Y + V++I +G
Sbjct: 100 GCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 160 IEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNG LAM ++ G + Q I TG GP+ NL HLA+PG FA FTP
Sbjct: 204 KNGALAMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKFTP 252
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 111/236 (47%), Gaps = 45/236 (19%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
K +RK+ T S D + L PP +L G PGD+G+D GL
Sbjct: 2 KFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 61
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDT 135
E++H RWAMLGA G PELL + G+ W+ AG L+Y +
Sbjct: 62 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 121
Query: 136 T--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
+ ++ V++I +G EG R A P DP+ YPGG F
Sbjct: 122 SLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGEVVDPL------------YPGGS-F 166
Query: 188 DPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
DPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 167 DPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 221
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 129/270 (47%), Gaps = 56/270 (20%)
Query: 9 AVAAISSPSSQKSRSVAGATK---ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPL 65
A +SS + K+ + G T+ A+ G ++ +RK A + + P+R
Sbjct: 2 ASMTLSSTFTSKAVPLNGITEFSSATCCGNGRVSMRK----AAGKVADSGSPWYGPDRVK 57
Query: 66 W---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIP 109
+ F G PP +L G PGD+G+D GL E++H RWAMLGA G P
Sbjct: 58 YLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 116
Query: 110 ELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 153
ELL + G+ W+ AG L+Y + + ++ +++ +G EG R
Sbjct: 117 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYR 176
Query: 154 WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 213
A P TDP+ YPGG FDPLG PE EL+ KEIKNGRL
Sbjct: 177 IAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRL 220
Query: 214 AMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
AM ++ G + Q I TG GP++NL HLADP
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 105/229 (45%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + ++ P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL K G W+ AG L+Y + V++I +G
Sbjct: 100 GCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 160 IEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GP+ NL HLA+P FA FTP
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 252
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 100/200 (50%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PE+L+K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ +++ +G+ EG R V
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------V 176
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 177 GGGPL-----GEGLDKIYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GPI+NL H+ DP
Sbjct: 230 QAIVTGKGPIENLSDHINDP 249
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 128/265 (48%), Gaps = 54/265 (20%)
Query: 11 AAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWF-PG 69
AA++S + + VA A KA + K+ T+S + + P+R + P
Sbjct: 3 AALASSTFLGAAVVAPAQKA-----EAKKINTVVEARRTKSATPDSPFYGPDRVTFLGPF 57
Query: 70 STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG 116
+ P +L G PGD+G+D +GL E++H RWAMLG G F+PE L K
Sbjct: 58 TDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYS 117
Query: 117 ILN--TPSWYTAGE-------LEYFTD---------TTTLFIVEMIFIGWAEGRRWADII 158
+N W+ AG L+Y + T+FI + + +G EG R
Sbjct: 118 GINFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFI-QALLMGLVEGYR----- 171
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
V P+ D YPGG FDPLG G P+ + EL+ KEIKNGRLAM ++
Sbjct: 172 ----VGGGPLGEAG-----DKMYPGG-SFDPLGLGD-DPDTLAELKVKEIKNGRLAMFSM 220
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL AHLADP
Sbjct: 221 FGYFIQAIVTGKGPVENLDAHLADP 245
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 110/224 (49%), Gaps = 47/224 (20%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R L+ PP +L G PGD+G+D GL E++HCRWAMLGA G
Sbjct: 52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL + G+ W+ AG L+Y + + ++ +++ +G
Sbjct: 112 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DP+ YPGG FDPLG PE EL+ KE+K
Sbjct: 172 EGYRIAG--GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFGELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
GRLAML++ G + Q I TG GP++NL H+ADP + +A T
Sbjct: 216 KGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYAT 259
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 106/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 110
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PELL+K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 111 CVFPELLSKNGVQFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFV 170
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R + G + D D YPGG FDPLG PE EL+ KE+K
Sbjct: 171 EGYR----VGGGPLGED----------LDKLYPGGA-FDPLGLAD-DPEAFAELKVKELK 214
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL+ H+ADP
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPVENLVDHIADP 248
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 121/244 (49%), Gaps = 53/244 (21%)
Query: 33 LGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDP 88
LG + +RK +A T+ V+ S + P+R + F G +P +L G PGD+G+D
Sbjct: 30 LGAARFTMRK---SATTKKVASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDT 85
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------ 128
GL E++H RWAMLGA G PELL++ G+ W+ AG
Sbjct: 86 AGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 145
Query: 129 -LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
L+Y + + ++ ++I +G EG R A P DP+
Sbjct: 146 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPL----------- 192
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H
Sbjct: 193 -YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 249
Query: 240 LADP 243
LADP
Sbjct: 250 LADP 253
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 121/260 (46%), Gaps = 61/260 (23%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G G R + P + +W+ P
Sbjct: 7 QQSAFAGQTALKQSNELIRKIGGLGGGRITMRRTVKSTP-QSIWYGPDRPKYLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWAMLGALGCVFPEILSKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ V+++ +G+ EG R V
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------V 176
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
P+ G D YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 177 GGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKELKNGRLAMTSMFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL H+ADP
Sbjct: 230 QAIVTGKGPVENLYDHVADP 249
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 92
Query: 119 NTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG + F+D +L + I WA +I G V + N
Sbjct: 93 GEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGN 146
Query: 172 NKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 147 GPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 204
Query: 231 GPIDNLIAHLADP 243
GPI+NL HLADP
Sbjct: 205 GPIENLADHLADP 217
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 110/245 (44%), Gaps = 54/245 (22%)
Query: 48 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL----------- 91
G + VSV AA P+R W + P +L G PGD+G+D GL
Sbjct: 18 GNKRVSVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYR 77
Query: 92 --EIVHCRWAMLGAAGIFIPELLTKLG--ILNTPSWYTAGE-------LEYF-------- 132
E++H RWAMLGA G PE+L K G W+ AG L+Y
Sbjct: 78 ETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHA 137
Query: 133 TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 192
+ I ++I +G EG R P DP++P FDPLG
Sbjct: 138 QSIGAIVISQVILMGLIEGYRVNG--GPAGEGLDPLYPGES-------------FDPLGL 182
Query: 193 GSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA-- 250
P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++N H+ADP A F+
Sbjct: 183 AD-DPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFSYA 241
Query: 251 -AFTP 254
FTP
Sbjct: 242 TKFTP 246
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 100/212 (47%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PG P LDGS PGDFGFDPL L E++HCRWAML G+ IPE L
Sbjct: 10 WMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL 69
Query: 113 TKLGILNTPSW--YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W + YF + VE + I + E +R N
Sbjct: 70 GLGNWVEAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR----------N 119
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+P K YPGG FDPLG+ S P K KE + KEIKNGRLA+LA +G Q
Sbjct: 120 GEPDPEKRK-------YPGGA-FDPLGF-SKDPVKFKEYKVKEIKNGRLALLAFVGFCVQ 170
Query: 225 -HIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
GTGP++NL HL+DP H + P+
Sbjct: 171 ASANPGTGPLENLATHLSDPWHRNIAEIIIPR 202
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 114/241 (47%), Gaps = 51/241 (21%)
Query: 49 TRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
TR V+ ++ PNRP + F GSTP +L G PGD+G+D GL
Sbjct: 19 TRQVTRASVEWYGPNRPQFLGPFSGSTP-SYLKGEYPGDYGWDTAGLSADPETFARYREL 77
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGI--LNTPSWYTAGE-------LEYFTD-------- 134
E++H RWAMLGA G PELL G+ W+ AG L+Y +
Sbjct: 78 EVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQS 137
Query: 135 TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 194
+ + ++ +G EG R VN P G D YPG FDPLG
Sbjct: 138 IVAVLLTQLTLMGLIEGYR---------VNGGPAG-----EGLDALYPGEA-FDPLGLAD 182
Query: 195 GSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTP 254
P+ EL+ KE+KNGRLAM+++ G + Q I T GPI+NL HLA P +A + P
Sbjct: 183 -DPDTFSELKVKELKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASPDATNFWAIYAP 241
Query: 255 K 255
K
Sbjct: 242 K 242
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 104/206 (50%), Gaps = 31/206 (15%)
Query: 61 PNRPLWF-PGST-PPEWLDGSLPGDFGFDPLG-------------LEIVHCRWAMLGAAG 105
P+RP + P S P +L G PGD+G+D LE++HCRWAMLGA G
Sbjct: 13 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALG 72
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PELL K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 73 CVFPELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WACQVVLMGL 131
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
I+ V P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM +
Sbjct: 132 IEGYRVGGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFS 184
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL HLADP
Sbjct: 185 MFGFFVQAIVTGKGPIENLYDHLADP 210
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 111/239 (46%), Gaps = 45/239 (18%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-- 91
G K +RK+ T S D + L PP +L G PGD+G+D GL
Sbjct: 1 GASKFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYF 132
E++H RWAMLGA G PELL + G+ W+ AG L+Y
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 133 TDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
+ + ++ V++I +G EG R A P DP+ YPGG
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGEVVDPL------------YPGG 166
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
FDPLG PE E + KE+KNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 167 S-FDPLGLAD-DPEAFAEXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 223
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 114/227 (50%), Gaps = 49/227 (21%)
Query: 49 TRSVSVSAAAADPNRPLWF-PGSTPPEWLDGSLPGDFGFDPLGL-------------EIV 94
T+S + + P+R + P + P +L G PGD+G+D +GL E++
Sbjct: 36 TKSATPDSPFYGPDRVTFLGPFTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELM 95
Query: 95 HCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTT--------- 136
H RWAMLG G F+PE L K +N W+ AG L+Y + +
Sbjct: 96 HARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIA 155
Query: 137 TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 196
T+FI + + +G EG R V P+ D YPGG FDPLG G
Sbjct: 156 TVFI-QALLMGLVEGYR---------VGGGPLGEAG-----DKMYPGG-SFDPLGLGD-D 198
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
P+ + EL+ KEIKNGRLAM ++ G + Q I TG GP++NL AHLADP
Sbjct: 199 PDTLAELKVKEIKNGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADP 245
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 121/255 (47%), Gaps = 49/255 (19%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFD 87
+S G ++ +RK A + + + P+R L+ PP +L G PGD+G+D
Sbjct: 18 SSLFGEARVTMRKTAAK--PKPAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWD 75
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE----- 128
GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 76 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 135
Query: 129 --LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTD 178
L+Y + + ++ +++ +G EG R A P DP+
Sbjct: 136 GGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPL---------- 183
Query: 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIA 238
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL
Sbjct: 184 --YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 239
Query: 239 HLADPGHATVFAAFT 253
HLADP + +A T
Sbjct: 240 HLADPVNNNAWAYAT 254
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 70 PDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 129
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTL-FIVEMIFIGWAEGRRWADIIK 159
AAG IPE K G P W+ G L D TL + + I I ++
Sbjct: 130 AAGFVIPEAFNKFGADCGPEAVWFKTGAL--LLDGNTLNYFGKNIPINLVVAVVAEVVLL 187
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
G + N L D +PGG FDPLG P++ L+ KEIKNGRLAM A++
Sbjct: 188 GGA---EYYRITNGLDLEDKLHPGGP-FDPLGLAK-DPDQAAILKVKEIKNGRLAMFAML 242
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q TG GP++NL AHL+DP
Sbjct: 243 GFFIQAYVTGKGPVENLAAHLSDP 266
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 132/265 (49%), Gaps = 62/265 (23%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKN-GATAGTRSVSVSAAAADPNRPLW---F 67
++ P ++ SR V G+++A ++ +R+ +AG+ S+ A +RP + F
Sbjct: 16 SLLKPVNELSRKV-GSSQA------RVTMRRTVNKSAGSDSIWYGA-----DRPKYLGPF 63
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
G TP +L+G GD+G+D GL E++H RWAMLGA G PELL K
Sbjct: 64 SGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAK 122
Query: 115 LGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADII 158
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG-- 180
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAV 218
P TDPI YPGG FDPLG P+ EL+ KEIKNGRLAM ++
Sbjct: 181 GPLGEVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSM 226
Query: 219 MGAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL HLADP
Sbjct: 227 FGFFVQAIVTGKGPLENLNDHLADP 251
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 112/235 (47%), Gaps = 40/235 (17%)
Query: 40 LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLPGDFGFDPL 89
+RK G+ +R+ + P + +W+ P P +L G PGD+G+D
Sbjct: 24 VRKVGSFGSSRTTMRRTVKSTP-QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 82
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------- 128
GL E++H RWAMLGA G PE+L K G+ W+ AG
Sbjct: 83 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGSQIFSEGG 142
Query: 129 LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 188
L+Y + + ++ I WA +I+ + P+ G D YPGG FD
Sbjct: 143 LDYLGNPNLVHAQSILAI-WASQVVLMGLIEGYRIGGGPLG-----EGLDSLYPGGA-FD 195
Query: 189 PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
PLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 196 PLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADP 249
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 104/216 (48%), Gaps = 49/216 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R LW F P +L G PGD+G+D GL E++H RWAMLG
Sbjct: 131 PDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTL 190
Query: 105 GIFIPELLTKL-GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIG 147
G PELL K G+ + P W+ AG L+Y + + + ++I +G
Sbjct: 191 GCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMG 250
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R VN P G D PGG FDPLG P+ EL+ KE
Sbjct: 251 GAEAYR---------VNGGPAG-----EGLDAINPGGA-FDPLGLAD-DPDTFAELKVKE 294
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM +++G + Q I TG GP++N H+ADP
Sbjct: 295 IKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADP 330
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 126/269 (46%), Gaps = 64/269 (23%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD-----PNRPLW 66
A+SSP+ + + G ++ +RK +V A +D P+R +
Sbjct: 7 ALSSPALAGKAVKVAPSSSELFGNGRVSMRK----------TVKAPVSDSPWYGPDRVKY 56
Query: 67 ---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPE 110
F G P +L G PGD+G+D GL E++H RWAMLGA G PE
Sbjct: 57 LGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 115
Query: 111 LLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRW 154
LL + G+ W+ AG L+Y + + +++ ++I +G EG R
Sbjct: 116 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRV 175
Query: 155 ADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214
A P DP+ YPGG FDPLG PE+ EL+ KE+KNGRLA
Sbjct: 176 AG--GPLGEIVDPL------------YPGGS-FDPLGLAE-DPERSAELKVKELKNGRLA 219
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
M ++ G + Q I TG GP++NL HLADP
Sbjct: 220 MFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 117/252 (46%), Gaps = 57/252 (22%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSL 80
SFLG + L R G AG R + P + +W+ P P +L G
Sbjct: 11 SFLG-QALVARAAGVDAGDRITMRRTVKSVP-QSIWYGPDRPKYLGPFSEQTPSYLTGEF 68
Query: 81 PGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTA 126
PGD+G+D GL E++H RWAMLGA G PE+L K G+ W+ A
Sbjct: 69 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKA 128
Query: 127 GE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
G L+Y + ++ +++ +G+ EG R V P+
Sbjct: 129 GAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------VGGGPLG-- 177
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 178 ---EGLDKVYPGGA-FDPLGLAD-DPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 232
Query: 232 PIDNLIAHLADP 243
PI+NL H+ADP
Sbjct: 233 PIENLFDHVADP 244
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 106/216 (49%), Gaps = 49/216 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R LW F P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 115 PDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGAL 174
Query: 105 GIFIPELLTKL-GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIG 147
G PELL+K G+ + P W+ AG L+Y + + + +++ +G
Sbjct: 175 GCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILACQVVLMG 234
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R VN P G D PGG FDPLG P+ EL+ KE
Sbjct: 235 GAEAYR---------VNGGPAG-----EGLDAINPGGA-FDPLGLAD-DPDTFAELKVKE 278
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM +++G + Q I TG GP++N H+ADP
Sbjct: 279 IKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADP 314
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 114/249 (45%), Gaps = 42/249 (16%)
Query: 30 ASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PE 74
+SF G LK LRK GA+ G V + + +W+ P P
Sbjct: 9 SSFTGQTALKPSNDLLRKVGASNGGGRVIMRRTVKSTPQSIWYGPDRPKYLGPFSENTPS 68
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 69 YLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGE 128
Query: 121 PSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
W+ AG + + + L + I WA ++ G + I
Sbjct: 129 AVWFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWA-----CQVVLMGFIEGYRIGGGPLG 183
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
G D YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q I TG GPI+
Sbjct: 184 EGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 241
Query: 235 NLIAHLADP 243
NL H+ADP
Sbjct: 242 NLFDHIADP 250
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 100/200 (50%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 34 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 93
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 94 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGE 151
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 152 VVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 197
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 198 QAIVTGKGPLENLADHLADP 217
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 121/262 (46%), Gaps = 57/262 (21%)
Query: 23 SVAGATKASFLGGKKL--KLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP-------- 72
+ A A ++ L G+ L + + GT VS + + +W+ P
Sbjct: 2 AAATAMHSTTLAGQSLLKPVNELSRKVGTSEARVSMRKSSGSDSIWYGADRPKFLGPFSG 61
Query: 73 --PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
P +L+G GD+G+D GL E++H RWAMLGA G PELL K G+
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 121
Query: 118 -LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPG 161
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPL 179
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
TDPI YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G
Sbjct: 180 GEVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGF 225
Query: 222 WFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL HLADP
Sbjct: 226 FVQAIVTGKGPLENLNDHLADP 247
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 104/229 (45%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 98
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL K G W+ AG L+Y + V++I +G
Sbjct: 99 GCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGL 158
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 159 IEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 202
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GP+ NL HLA+P FA FTP
Sbjct: 203 KNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 109/221 (49%), Gaps = 47/221 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 109
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PE+L+K GI W+ AG L+Y + ++ V+++ +G+
Sbjct: 110 CVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFI 169
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D+ YPGG FDPLG P+ EL+ KE+K
Sbjct: 170 EGYR---------VGGGPL-----DEGLDIIYPGGA-FDPLGLAD-DPDTAAELKVKELK 213
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
NGRLAM ++ G + Q I TG GP++NL L DPG+ +A
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPVENLFDQLRDPGNNNAWA 254
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 117/246 (47%), Gaps = 53/246 (21%)
Query: 29 KASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGF 86
K LGG ++ +R+ T + + P+RP + P +L G PGD+G+
Sbjct: 26 KVGVLGGGRVTMRR------TVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 79
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++H RWAMLGA G PE+L+K G+ W+ AG
Sbjct: 80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFS 139
Query: 129 ---LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L+Y + ++ V+++ +G+ EG R + P+ G
Sbjct: 140 EGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYR---------IGGGPLG-----EGL 185
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 186 DPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLF 243
Query: 238 AHLADP 243
HLADP
Sbjct: 244 DHLADP 249
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 104/216 (48%), Gaps = 49/216 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R LW F P +L G PGD+G+D GL E++H RWAMLG
Sbjct: 130 PDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTL 189
Query: 105 GIFIPELLTKL-GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIG 147
G PELL K G+ + P W+ AG L+Y + + + ++I +G
Sbjct: 190 GCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMG 249
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R VN P G D PGG FDPLG P+ EL+ KE
Sbjct: 250 GAEAYR---------VNGGPAG-----EGLDAINPGGA-FDPLGLAD-DPDTFAELKVKE 293
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM +++G + Q I TG GP++N H+ADP
Sbjct: 294 IKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADP 329
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 106/212 (50%), Gaps = 44/212 (20%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S P++L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 68 PDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLG 127
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAG-------ELEYFTDTTTLFIVEMIFIGWAE--G 151
AAG IPE K G P W+ G L YF ++ + ++ + G
Sbjct: 128 AAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGG 187
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ II N L D +PGG FDPLG S P++ L+ KEIKNG
Sbjct: 188 AEYYRII-------------NGLDLEDKLHPGG-PFDPLGLAS-DPDQAALLKVKEIKNG 232
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
RLAM +++G + Q TG GP++NL HL+DP
Sbjct: 233 RLAMFSMLGFFIQAYVTGEGPVENLSKHLSDP 264
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 122/253 (48%), Gaps = 56/253 (22%)
Query: 31 SFLGGKKLK---LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPEWLDGS 79
SFLG + +R+ G + G ++ + +A P+RP + P +L G
Sbjct: 11 SFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 70
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYT 125
PGD+G+D GL E++H RWAMLGA G PE+L+K G+ W+
Sbjct: 71 FPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 130
Query: 126 AGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
AG L+Y + ++ V+++ +G+ EG R V P+
Sbjct: 131 AGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG- 180
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 181 ----EGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 234
Query: 231 GPIDNLIAHLADP 243
GPI+NL H+ADP
Sbjct: 235 GPIENLFDHVADP 247
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 122/258 (47%), Gaps = 58/258 (22%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPE 74
+++F G LK +R+ G++ G + + A+ P+RP + P
Sbjct: 7 QQSAFAGQTALKQQNELVRRVGSSRGRFFMRRTTASTPKSIWYGPDRPKYLGPFSEQTPS 66
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++H RWAMLGA G PE+L K G+
Sbjct: 67 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPEILAKNGVKFGE 126
Query: 121 PSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
W+ AG L+Y + ++ +++ +G+ EG R V
Sbjct: 127 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------VGG 177
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
P+ G D YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q
Sbjct: 178 GPL-----GEGLDAIYPGGA-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQA 230
Query: 226 IYTGTGPIDNLIAHLADP 243
I TG GPI+NL HLADP
Sbjct: 231 IVTGKGPIENLYDHLADP 248
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 119/250 (47%), Gaps = 44/250 (17%)
Query: 36 KKLKLRKNGATAGTRSVSVSAAAAD------PNRPLWFPG-----STPPEWLDGSLPGDF 84
K +K K G A + AAD P+R L+ P S PE+L+G L GD+
Sbjct: 24 KVVKPSKAGGKATRGWLGGQGGAADLDKWYGPDRKLFLPSGLYDRSEIPEYLNGELAGDY 83
Query: 85 GFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWY------ 124
G+DPLGL E++H RWAML AAGI IPE L G + +W+
Sbjct: 84 GYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANIKGGTWFETGAEM 143
Query: 125 -TAGELEYF-------TDTTTLFIV---EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
G L YF ++ LF V E+ +G E R G F ++
Sbjct: 144 LNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSV 203
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
G D YPGG FDPLG PE ++EL+ KEIKNGRLAM++V+G Q TG GP
Sbjct: 204 FDGLDPLYPGGP-FDPLGLAD-DPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPY 261
Query: 234 DNLIAHLADP 243
N H+ADP
Sbjct: 262 ANWTKHVADP 271
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 33 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 92
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PELL K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 93 CVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WACQVVLMGL 151
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
I+ V P+ G D YPGG FDPLG PE EL+ KEIKNGRLAM +
Sbjct: 152 IEGYRVGGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFS 204
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL HLADP
Sbjct: 205 MFGFFVQAIVTGKGPIENLYDHLADP 230
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 113/243 (46%), Gaps = 56/243 (23%)
Query: 40 LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLPGDFGFDPL 89
+RK G+ +R + P + +W+ P P + G PGD+G+D
Sbjct: 24 VRKVGSCGESRITMRRTVKSAP-QSIWYGEDRPKYLGPFSEQTPSYSTGEFPGDYGWDTA 82
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------- 128
GL E++HCRWAMLGA G PE+L+K G+ W+ AG
Sbjct: 83 GLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGG 142
Query: 129 LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
L+Y + ++ +++ +G+ EG R V P+ G D
Sbjct: 143 LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------VGGGPLG-----EGLDKI 188
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL H+
Sbjct: 189 YPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHI 246
Query: 241 ADP 243
DP
Sbjct: 247 NDP 249
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 124/252 (49%), Gaps = 57/252 (22%)
Query: 29 KASFLGG----KKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSL 80
+ F+GG ++ +RK TA + V+ S + P+R + F G P +L G
Sbjct: 23 QNEFVGGVHGEGRITMRK---TASKKVVASSGSPWYGPDRVKYLGPFSGEAP-SYLTGEF 78
Query: 81 PGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTA 126
PGD+G+D GL E++H RWAMLGA G PELL++ G+ W+ A
Sbjct: 79 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKA 138
Query: 127 GE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
G L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 139 GSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEITDPI--- 193
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 194 ---------YPGGS-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 242
Query: 232 PIDNLIAHLADP 243
PI+NL HLADP
Sbjct: 243 PIENLADHLADP 254
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 114/230 (49%), Gaps = 53/230 (23%)
Query: 50 RSVSVSAAAAD----PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL----------- 91
R+VS SA + +RP + F G TP +L+G GD+G+D GL
Sbjct: 39 RTVSKSAGSDSIWYGADRPKFLGPFSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNR 97
Query: 92 --EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT----- 136
E++H RWAMLGA G PELL K G+ W+ AG L+Y + +
Sbjct: 98 ELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQ 157
Query: 137 ---TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
++ +++ +G EG R A P TDPI YPGG FDPLG
Sbjct: 158 SILAIWACQVVLMGAVEGYRVAG--GPLGEVTDPI------------YPGGS-FDPLGLA 202
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 203 D-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 105/210 (50%), Gaps = 45/210 (21%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 181
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 182 ITDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 227
Query: 224 QHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
Q I TG GP++NL HLADP + +A T
Sbjct: 228 QAIVTGKGPLENLADHLADPVNNNAWAYAT 257
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 105/216 (48%), Gaps = 46/216 (21%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G LPGD+G+D GL E++H RWAMLGA
Sbjct: 471 PNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAV 530
Query: 105 GIFIPELLTKL-GI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIG 147
G F+PE L + G+ P W+ AG L YF + +++ +G
Sbjct: 531 GCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMG 590
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
E R A PG D D YPGG FDPLG P+ EL+ KE
Sbjct: 591 AVEAYR-AGNTAPGQFGED----------LDRLYPGGP-FDPLGLAD-DPDTFAELKVKE 637
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM+A++G + Q I TG GP++N + HL DP
Sbjct: 638 IKNGRLAMMAMLGFYAQAIVTGEGPVENWLYHLQDP 673
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 99/201 (49%), Gaps = 43/201 (21%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL-GI- 117
P +L G LPGD+G+D GL E++H RWAMLGA G F+PE L + G+
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 118 LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L YF + +++ +G E R A PG
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR-AGNTAPGQ 120
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D D YPGG FDPLG P+ EL+ KEIKNGRLAM+A++G +
Sbjct: 121 FGED----------LDRLYPGGP-FDPLGLAD-DPDTFAELKVKEIKNGRLAMVAMLGFY 168
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++N + HL DP
Sbjct: 169 AQAIVTGEGPVENWLYHLQDP 189
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 116/232 (50%), Gaps = 52/232 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R W + + P +L+G LPGD+G+D GL E++H RWAMLGA
Sbjct: 228 PDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGAL 287
Query: 105 GIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTD------TTTLFIV--EMIFIG 147
G+ PE L++ I + P W+ AG L+Y D + L I+ +++ +G
Sbjct: 288 GVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMG 347
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R + + G D D YPGG FDPLG + P+ + EL+ KE
Sbjct: 348 AAEAYRTGNGL--GNFGKD----------LDSLYPGGP-FDPLGLAN-DPDTLAELKVKE 393
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG-----HATVFAAFTP 254
IKNGRLAM A+ G + Q I TG P++NL AHLA P +A FTP
Sbjct: 394 IKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNAAYMTQFTP 445
>gi|413939029|gb|AFW73580.1| hypothetical protein ZEAMMB73_964613 [Zea mays]
Length = 158
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 100 MLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADII 158
M G AGI +LL G + P W+ AG ++ F +TT LF V++ +G+AE +R+ D
Sbjct: 1 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFK 60
Query: 159 KPGCVNTDPIFP--NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
PG + F L G GYPGG F+PLG E + + KEIKNGRLAM+
Sbjct: 61 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAK-DIENAHDEKLKEIKNGRLAMV 119
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
A++G Q T GPIDNL+ HL+DP + + F+
Sbjct: 120 AMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFS 156
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 117/252 (46%), Gaps = 57/252 (22%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSL 80
SFLG + L R G AG R + P + +W+ P P +L G
Sbjct: 11 SFLG-QALVSRAAGVDAGGRITMRRTVKSVP-QSIWYGPDRPKYLGPFSEQTPSYLTGEF 68
Query: 81 PGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTA 126
PGD+G+D GL E++H RWAMLGA G PE+L K G+ W+ A
Sbjct: 69 PGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKA 128
Query: 127 GE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
G L+Y + ++ +++ +G+ EG R V P+
Sbjct: 129 GAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR---------VGGGPLG-- 177
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 178 ---EGLDKVYPGGA-FDPLGLAD-DPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 232
Query: 232 PIDNLIAHLADP 243
PI+NL H+ADP
Sbjct: 233 PIENLFDHVADP 244
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 116/237 (48%), Gaps = 49/237 (20%)
Query: 49 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------E 92
T+ VS + P+R + F G PP +L G PGD+G+D GL E
Sbjct: 38 TKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 96
Query: 93 IVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT-------- 136
++H RWAMLGA G PELL++ G+ W+ AG L+Y + +
Sbjct: 97 VIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSIL 156
Query: 137 TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 196
++ ++I +G EG R A P TDPI YPGG FDPLG
Sbjct: 157 AIWATQVILMGAVEGYRIAG--GPLGEVTDPI------------YPGGS-FDPLGLAD-D 200
Query: 197 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLA P + +A T
Sbjct: 201 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYAT 257
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 116/250 (46%), Gaps = 44/250 (17%)
Query: 30 ASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PE 74
+SF G LK LRK GA+ G + + + +W+ P P
Sbjct: 9 SSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLGPFSENTPS 68
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 69 YLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGE 128
Query: 121 PSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
W+ AG L+Y + + ++ I WA ++ G + I
Sbjct: 129 AVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGFIEGYRIGGGPL 182
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
G D YPGG FDPL PE EL+ KE+KNGRLAM ++ G + Q I TG GPI
Sbjct: 183 GEGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Query: 234 DNLIAHLADP 243
+NL H+ADP
Sbjct: 241 ENLFDHIADP 250
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 119/252 (47%), Gaps = 45/252 (17%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G+ G R V++ + +W+ P
Sbjct: 7 QQSAFAGQTALKQPNDLVRKVGSFGGGR-VTMRRTVKSAPQSIWYGPDRPKFLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG L+Y + + ++ I WA ++ V P+
Sbjct: 126 GESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGFVEGYRVGGGPLG-- 182
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 183 ---EGLDPIYPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 232 PIDNLIAHLADP 243
P++NL+ HLADP
Sbjct: 238 PVENLLDHLADP 249
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 115/236 (48%), Gaps = 47/236 (19%)
Query: 37 KLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----- 91
++ +R+ + RS S+ A P F G TP +L+G GD+G+D GL
Sbjct: 34 RVTMRRT-VSKSARSDSIWYGADRPKFLGPFSGETP-SYLNGEFAGDYGWDTAGLSSDLE 91
Query: 92 --------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDT 135
E++H RWAMLGA G PELL K G+ W+ AG L+Y +
Sbjct: 92 TFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNP 151
Query: 136 T--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
+ ++ +++ +G EG R A P TDPI YPGG F
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVTDPI------------YPGGS-F 196
Query: 188 DPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
DPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 197 DPLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 115/243 (47%), Gaps = 55/243 (22%)
Query: 40 LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLPGDFGFDPL 89
+RK G + ++ + + + + +W+ P P +L+G GD+G+D
Sbjct: 25 VRKVGTSQARVTMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTA 84
Query: 90 GL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE------- 128
GL E++H RWAMLGA G PELL K G+ W+ AG
Sbjct: 85 GLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGG 144
Query: 129 LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 145 LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGDVTDPI------------ 190
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HL
Sbjct: 191 YPGGS-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHL 248
Query: 241 ADP 243
ADP
Sbjct: 249 ADP 251
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 122/250 (48%), Gaps = 54/250 (21%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPG 82
++ + +G ++ +RK A T+ V+ S + P+R + F G PP +L G PG
Sbjct: 24 SSASELMGNGRVSMRK----AATKKVAPSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPG 78
Query: 83 DFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE 128
D+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 79 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS 138
Query: 129 -------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
L+Y + + ++ +++ +G EG R A P DPI
Sbjct: 139 QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPI----- 191
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP+
Sbjct: 192 -------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 242
Query: 234 DNLIAHLADP 243
+NL HL DP
Sbjct: 243 ENLADHLFDP 252
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R L+ PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 89 PDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 148
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL + G+ W+ AG L+Y + + ++ +++ +G
Sbjct: 149 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAI 208
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DP+ YPGG FDPLG PE EL+ KE+K
Sbjct: 209 EGYRVAG--GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELK 252
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 253 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 286
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 132/277 (47%), Gaps = 64/277 (23%)
Query: 2 ASVCASPAVAAIS--SPSSQKSRSVAGATKASFLGGKKLKLRKN-GATAGTRSVSVSAAA 58
A+ S A+A S P ++ SR V ++ +R+ +AG+ S+ A
Sbjct: 4 ATAMHSTALAGQSLFQPVNELSRKVGNVDS-------RVTMRRTVNKSAGSDSIWYGA-- 54
Query: 59 ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
+RP + F G TP +L+G GD+G+D GL E++H RWAMLG
Sbjct: 55 ---DRPKFLGPFSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLG 110
Query: 103 AAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFI 146
A G PELL K G+ W+ AG L+Y + + ++ +++ +
Sbjct: 111 ALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 170
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
G EG R A P TDPI YPGG FDPLG P+ EL+ K
Sbjct: 171 GAVEGYRVAG--GPLGEVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVK 214
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
EIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L K G+ W+ AG L+Y + + ++ I WA
Sbjct: 112 CVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGF 170
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
++ V P+ G D YPGG FDPLG P+ EL+ KE+KNGRLAM +
Sbjct: 171 VEGYRVGGGPLG-----EGLDPIYPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFS 223
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL+ HLADP
Sbjct: 224 MFGFFVQAIITGKGPIENLLDHLADP 249
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 125/257 (48%), Gaps = 54/257 (21%)
Query: 21 SRSVAGA-TKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEW 75
S ++AG K G ++ +RK T G V+ S + P+R + F G PP +
Sbjct: 10 STAMAGTPIKVGSFGEGRITMRK---TVGKPKVAASGSPWYGPDRVKYLGPFSGE-PPSY 65
Query: 76 LDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTP 121
L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 66 LTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEA 125
Query: 122 SWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
W+ AG L+Y + + ++ +++ +G EG R A P D
Sbjct: 126 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVD 183
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
P+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I
Sbjct: 184 PL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAI 229
Query: 227 YTGTGPIDNLIAHLADP 243
TG GP++NL H+ADP
Sbjct: 230 VTGKGPLENLADHIADP 246
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+ +D GL E++H RWAMLGA G
Sbjct: 53 PDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 112
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PELL K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 113 CVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WAFQVVLMGL 171
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
I+ V P+ G D YPGG FDPLG PE EL+ KE+KNGRLAM +
Sbjct: 172 IEGYRVGGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKELKNGRLAMFS 224
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
+ G + Q I TG GPI+NL HLADP + +A T
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHLADPANNNAWAYAT 260
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 96/189 (50%), Gaps = 41/189 (21%)
Query: 79 SLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSW-- 123
S PGDFGFDPLGL E++HCRWAML GI +PE L + W
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 60
Query: 124 YTAGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
G+ Y + T+ +E + I + E +R + DP
Sbjct: 61 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDP---------E 103
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNL 236
YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q Y GTGP++NL
Sbjct: 104 KKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 161
Query: 237 IAHLADPGH 245
HLADP H
Sbjct: 162 ATHLADPWH 170
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 114/238 (47%), Gaps = 37/238 (15%)
Query: 29 KASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGF 86
K LGG ++ +R+ RS S P+RP + P +L G PGD+G+
Sbjct: 26 KIGSLGGGRITMRRT-----VRSAPESIWYG-PDRPKYLGPFSEQTPSYLTGEFPGDYGW 79
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++H RWAMLGA G PE+L + G+ W+ AG
Sbjct: 80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILARNGVKFGEAVWFKAGAQIFS 139
Query: 129 ---LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 185
L+Y + + ++ I WA + ++ G V + G D YPGG
Sbjct: 140 EGGLDYLGNPNLVHAQSILAI-WA-----SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGS 193
Query: 186 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL HLADP
Sbjct: 194 -FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 249
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 128/264 (48%), Gaps = 54/264 (20%)
Query: 14 SSPSSQKSRSVAGA-TKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FP 68
+S + S ++AG K G ++ +RK T G V+ S + P+R + F
Sbjct: 3 ASTMAISSTAMAGTPIKVGSFGEGRITMRK---TVGKPKVAASGSPWYGPDRVKYLGPFS 59
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G PP +L G PGD+G+D GL E++H RWAMLGA G PELL++
Sbjct: 60 GE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 118
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--G 176
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 177 PLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMF 222
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL H+ADP
Sbjct: 223 GFFVQAIVTGKGPLENLADHIADP 246
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 125/267 (46%), Gaps = 52/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SS SS ++V + + K+ +RK A + VS + P+R +
Sbjct: 4 ATMALSS-SSFAGKAVNVPSSSEITRNGKVTMRKTVTKA--KPVSSGSPWYGPDRVKYLG 60
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G P +L G PGD+G+D GL E++HCRW MLGA G PEL
Sbjct: 61 PFSGEAP-SYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELF 119
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 120 ARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL KEIKNGRLAM
Sbjct: 180 --GPLGEVIDPL------------YPGGS-FDPLGLAD-DPEAFAELEVKEIKNGRLAMF 223
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 224 SMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 103/229 (44%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 43 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 102
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL K G W+ AG L+Y + ++I +G
Sbjct: 103 GCLTPELLAKNGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGL 162
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 163 VEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 206
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GP+ NL HL++P FA FTP
Sbjct: 207 KNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLSNPTVNNAFAFATKFTP 255
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 106/212 (50%), Gaps = 44/212 (20%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S P++L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 7 PDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLG 66
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGEL-------EYFTDTTTLFIVEMIFIGWAE--G 151
AAG IPE K G P W+ G L YF ++ + ++ + G
Sbjct: 67 AAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGG 126
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ II N L D +PGG FDPLG S P++ L+ KEIKNG
Sbjct: 127 AEYYRII-------------NGLDLEDKLHPGG-PFDPLGLAS-DPDQAALLKVKEIKNG 171
Query: 212 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
RLAM +++G + Q TG GP++NL HL+DP
Sbjct: 172 RLAMFSMLGFFIQAYVTGEGPVENLSKHLSDP 203
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 109/224 (48%), Gaps = 47/224 (20%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R L+ PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL + G+ W+ AG L+Y + + ++ +++ +G
Sbjct: 112 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DP+ YPGG FDPLG PE EL+ KE+K
Sbjct: 172 EGYRIAG--GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
NGRLAM ++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 105/216 (48%), Gaps = 46/216 (21%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G LPGD+G+D GL E++H RWAMLGA
Sbjct: 244 PNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAV 303
Query: 105 GIFIPELLTKL-GI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIG 147
G F+PE L + G+ P W+ AG L YF + +++ +G
Sbjct: 304 GCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMG 363
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
E R A PG D D YPGG FDPLG P+ EL+ KE
Sbjct: 364 AVEAYR-AGNTAPGQFGED----------LDRLYPGGP-FDPLGLAD-DPDTFAELKVKE 410
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM+A++G + Q I TG GP++N + HL DP
Sbjct: 411 IKNGRLAMVAMLGFYAQAIVTGEGPVENWLYHLQDP 446
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 111/216 (51%), Gaps = 47/216 (21%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R W + + P +L+G LPGD+G+D GL E++H RWAMLGA
Sbjct: 1 PDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGAL 60
Query: 105 GIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTD------TTTLFIV--EMIFIG 147
G+ PE L++ I + P W+ AG L+Y D + L I+ +++ +G
Sbjct: 61 GVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMG 120
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R + + G D D YPGG FDPLG + P+ + EL+ KE
Sbjct: 121 AAEAYRTGNGL--GNFGKD----------LDSLYPGGP-FDPLGLAN-DPDTLAELKVKE 166
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM A+ G + Q I TG P++NL AHLA P
Sbjct: 167 IKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASP 202
>gi|303324980|pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDTTTLFIVE 142
E+++ R+AMLGA G PE L K+G++ +W+ AG Y+ D TLF++E
Sbjct: 19 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLE 78
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKV 200
M +G+AE RR+ D KPG + K G + YPGG +F+PLG+G + +
Sbjct: 79 MALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK-DEKSL 137
Query: 201 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
KEL+ KE+KNGRLAMLA++G + Q + TG GP N
Sbjct: 138 KELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 104/221 (47%), Gaps = 46/221 (20%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R W G T PE+L G LPGD+G+D GL +++H RWAMLG G
Sbjct: 840 PDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGVLG 899
Query: 106 IFIPELLTKLG--ILNTPSWYTAGELEYFTD---------------TTTLFIVEMIFIGW 148
+ PE + + G P W+ AG + D F+ ++ +G
Sbjct: 900 CWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFLSTLVLMGA 959
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
E R A + + DP+ YPGG FDPLG PE EL+ KE+
Sbjct: 960 VEAYRSAGSVGDFGADLDPL------------YPGGP-FDPLGLAD-DPEAFLELKVKEV 1005
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
KNGRLAM+A+ G + Q I TG GP++N + HL DP +F
Sbjct: 1006 KNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIF 1046
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 46/222 (20%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R W T P +L G LPGD+G+D GL E++H RWAMLGA G
Sbjct: 598 PDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG 657
Query: 106 IFIPELLTKLGIL--NTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
+ PELL G+ WY AG L Y + + + F+ + +G
Sbjct: 658 VVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGA 717
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
E R+ + D + YPGG FDPLG + P+ + EL+ KE+
Sbjct: 718 VEAYRYGGGVGDSGRELDTL------------YPGGP-FDPLGLAN-DPDALAELKVKEL 763
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGRLAM+A++G + Q + T GP++NL HLADP +F+
Sbjct: 764 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 805
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 46/222 (20%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R W T P +L G LPGD+G+D GL E++H RWAMLGA G
Sbjct: 137 PDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG 196
Query: 106 IFIPELLTKLGIL--NTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
+ PELL G+ WY AG L Y + + + F+ + +G
Sbjct: 197 VVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGA 256
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
E R+ + D + YPGG FDPLG + P+ + EL+ KE+
Sbjct: 257 VEAYRYGGGVGDFGRELDTL------------YPGGP-FDPLGLAN-DPDALAELKVKEL 302
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGRLAM+A++G + Q + T GP++NL HLADP +F+
Sbjct: 303 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 344
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 100/217 (46%), Gaps = 48/217 (22%)
Query: 61 PNRPLWF---PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNRP W G PE+L G GD+GFD GL E+ + RWAMLG
Sbjct: 362 PNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVL 421
Query: 105 GIFIPELLTKL-GI-LNTPSWY-------TAGELEYFTDTTTLFIVEMI--------FIG 147
G PE+L+ + G+ P W+ G ++Y + + ++ F
Sbjct: 422 GCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTLVLELVFFF 481
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R A G D YPGG+ FDPLG S P E + KE
Sbjct: 482 AAETWREAGEGPLGKAQ-------------DKSYPGGV-FDPLGL-SKDPAAFAEAKVKE 526
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
+KNGRLAMLA++G + Q TG P++NL AHLA+PG
Sbjct: 527 VKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPG 563
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 198
F+ ++ +G E R A + + DP+ YPGG FDPLG PE
Sbjct: 10 FLSTLVLMGAVEAYRSAGSVGDFGADLDPL------------YPGGP-FDPLGLAD-DPE 55
Query: 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
EL+ KE+KNGRLAM+A+ G Q I TG GP++N + HL DP +F
Sbjct: 56 AFLELKVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLF 106
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 127/268 (47%), Gaps = 57/268 (21%)
Query: 27 ATKASFLGGKK---LKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSL 80
A K FLG + LR A A R P+R + F TP +L G
Sbjct: 14 AAKTPFLGHPRPSNAPLRDIAAAATGRITMSKELWYGPDRVKYLGPFSAQTP-SYLRGEF 72
Query: 81 PGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYT 125
PGD+G+D GL E++H RWAMLGA G PE+L K ++ P W+
Sbjct: 73 PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFK 132
Query: 126 AGELEYFTDTTTLFI----------------VEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
AG + F+D ++ +++ +G EG R + PG +
Sbjct: 133 AGA-QIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL--PGVGD----- 184
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 185 ------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 230 TGPIDNLIAHLADP--GHATVFAA-FTP 254
GP++NL+ HLADP +A V+A FTP
Sbjct: 237 KGPLENLLDHLADPVANNAWVYATKFTP 264
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 121/267 (45%), Gaps = 51/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SS + + + G K +RK A + VS + P+R +
Sbjct: 4 ATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKA--KPVSSGSPWYGPDRVKYLG 61
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G P +L G PGD+G+D GL E++HCRWAMLGA G PEL
Sbjct: 62 PFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 120
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
+ G+ W AG L+Y + + ++ +++ +G EG R A
Sbjct: 121 ARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG 180
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P V DP+ YPGG FDPLG PE EL+ KE KNGRLAM
Sbjct: 181 --GPLGVVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKETKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HL DP
Sbjct: 225 SMFGFFIQAIVTGKGPLENLADHLVDP 251
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 21 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 80
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PELL K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 81 CVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WAFQVVLMGL 139
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
I+ V P+ G D YPGG FDPLG PE EL+ KE+KNGRLAM +
Sbjct: 140 IEGYRVGGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPEAFAELKVKELKNGRLAMFS 192
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL HLADP
Sbjct: 193 MFGFFVQAIVTGKGPIENLFDHLADP 218
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 6 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 65
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PE+L+K G+ W+ AG L+Y + ++ V+++ +G+
Sbjct: 66 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFV 125
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D YPGG FDPLG P+ EL+ KE+K
Sbjct: 126 EGYR---------VGGGPL-----GEGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELK 169
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GPI+NL H+ADP
Sbjct: 170 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 203
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 117/250 (46%), Gaps = 56/250 (22%)
Query: 45 ATAGTRSVSVSAAAA----DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------ 91
ATA +R+ V AA P+RP + F P +L G PGD+G+D GL
Sbjct: 16 ATASSRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPET 75
Query: 92 -------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDT 135
E++H RWAMLGA G PELL+K ++ W+ AG L Y +
Sbjct: 76 FKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE 135
Query: 136 TTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
+ +++ +G AE R N P+ G D +PGG F
Sbjct: 136 NLVHAQSIIATLAFQVVVMGLAEAYR---------ANGGPLG-----EGLDPLHPGGA-F 180
Query: 188 DPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
DPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLA+P
Sbjct: 181 DPLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
Query: 248 VFA---AFTP 254
FA FTP
Sbjct: 240 AFAYATKFTP 249
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 100/200 (50%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 24 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 83
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 84 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVAG--GPLGE 141
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 142 VVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 187
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 188 QAIVTGKGPLENLADHLADP 207
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R L+ PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL + G+ W+ AG L+Y + + ++ +++ +G
Sbjct: 112 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAI 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DP+ YPGG FDPLG PE EL+ KE+K
Sbjct: 172 EGYRVAG--GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 119/242 (49%), Gaps = 56/242 (23%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAA---DPNRPLW---FPGSTPPEWLDGSLPGD 83
A G ++ +RK A T+ VS SA+ + P+R L+ F G PP +L G PGD
Sbjct: 33 AGVHGEARVTMRK----ATTKKVSASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGD 87
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE- 128
+G+D GL E++H RWAMLGA G PELL + G+ W+ AG
Sbjct: 88 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 147
Query: 129 ------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 148 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI------ 199
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+
Sbjct: 200 ------YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 251
Query: 235 NL 236
NL
Sbjct: 252 NL 253
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 112/239 (46%), Gaps = 52/239 (21%)
Query: 41 RKNGATAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL--- 91
R+ ++ ++ V+ A+ + P+RP + + P +L G PGD+G+D GL
Sbjct: 15 RRTVSSPKSKGKQVTRASIEWYGPDRPKFLGPYSDGATPSYLKGEYPGDYGWDTAGLSAD 74
Query: 92 ----------EIVHCRWAMLGAAGIFIPELLTKLG--ILNTPSWYTAGE-------LEYF 132
E++H RWA+LG GI PELL K G W+ AG L Y
Sbjct: 75 PETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSADGLNYL 134
Query: 133 TDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
+ + + ++I +G AEG R P TDP+ YPGG
Sbjct: 135 GNPSLVHAQSIIATVATQVILLGLAEGYRVNG--GPAGEITDPL------------YPGG 180
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
FDPLG P+ EL+ KEIKNGRLA A +G + Q I TG GPI NL HLADP
Sbjct: 181 A-FDPLGLAD-DPDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLADP 237
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 109/226 (48%), Gaps = 46/226 (20%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP + F PE+L G PGD+G+D GL E++H RWAMLGA
Sbjct: 31 PDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAMLGAL 90
Query: 105 GIFIPELLTKLG--ILNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIG 147
G +PELL K G + + W+ AG L Y + + +++ +G
Sbjct: 91 GCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQVVVMG 150
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R+ G P L G D YPG FDP+G P+ EL+ KE
Sbjct: 151 AAESFRF----NGGA-------PGGFLEGNDRLYPGD-QFDPMGLAE-DPDTFAELKVKE 197
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
IKNGRLAM ++ G + Q I TG GPI NL AHLADP +AA T
Sbjct: 198 IKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLADPSVNNAWAAAT 243
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 115/252 (45%), Gaps = 44/252 (17%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+SF G LK +RK GA+ G V + + +W+ P
Sbjct: 7 QHSSFAGQTALKPSNDLIRKVGASNGGGRVVMRRTVKSTPQSIWYGPDRPKYLGPFSENT 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PE+L+K G+
Sbjct: 67 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG L+Y + + ++ I WA ++ G + I
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGFIEGYRIGGG 180
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPL PE EL+ KE+KNGRLAM + G + Q I TG G
Sbjct: 181 PLGEGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFPMFGFFVQAIVTGKG 238
Query: 232 PIDNLIAHLADP 243
PI+NL H+ADP
Sbjct: 239 PIENLFDHIADP 250
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 125/268 (46%), Gaps = 53/268 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLW- 66
A A+SSPS + G ++ +RK TAG + VS + P+R +
Sbjct: 3 ASMALSSPSLVGKAVKLAPAASEVFGEGRVSMRK---TAGKPKPVSSGSPWYGPDRVKYL 59
Query: 67 --FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
F G P +L G GD+G+D GL E++H RWAMLGA G PEL
Sbjct: 60 GPFSGEAP-SYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPEL 118
Query: 112 LTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 155
L + G+ W+ AG L+Y + + ++ +++ +G EG R A
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVA 178
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 179 G--GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAM 222
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 223 FSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 113/230 (49%), Gaps = 53/230 (23%)
Query: 50 RSVSVSAAAAD----PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL----------- 91
R+VS SA + +RP + F G TP +L G GD+G+D GL
Sbjct: 39 RTVSKSAGSDSIWYGADRPKFLGPFSGETP-SYLTGEFAGDYGWDTAGLSSDPETFARNR 97
Query: 92 --EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT----- 136
E++H RWAMLGA G PELL K G+ W+ AG L+Y + +
Sbjct: 98 ELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQ 157
Query: 137 ---TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
++ +++ +G EG R A P TDPI YPGG FDPLG
Sbjct: 158 SILAIWACQVVLMGAVEGYRVAG--GPLGEVTDPI------------YPGGS-FDPLGLA 202
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 203 D-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 108/225 (48%), Gaps = 51/225 (22%)
Query: 62 NRPLWFPGST-PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
+RP + T P +L+G PGD+G+D GL E++H RWAMLGA GI
Sbjct: 70 DRPGYLGAFTRSPSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAMLGALGIV 129
Query: 108 IPELLTKLGILNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGR 152
+PELL + N +W+ AG ++Y + V++I +G EG
Sbjct: 130 VPELLDQT---NHVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQVILMGAIEGY 186
Query: 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGR 212
R VN P G D YPG FDPLG P+ EL+ KEIKNGR
Sbjct: 187 R---------VNGGP-----AGEGLDKVYPGE-SFDPLGLAD-DPDTFAELKVKEIKNGR 230
Query: 213 LAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA---FTP 254
LAM + G + Q I TG GPI NL HLA+P FAA FTP
Sbjct: 231 LAMFSNFGFFVQAIVTGKGPIANLNDHLANPTVNNGFAAATKFTP 275
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 106/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 6 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 65
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PE+L+K GI W+ AG L+Y + ++ +++ +G+
Sbjct: 66 CVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFI 125
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D+ YPGG FDPLG P+ EL+ KE+K
Sbjct: 126 EGYR---------VGGGPL-----GEGLDIIYPGGA-FDPLGLAD-DPDTAAELKVKELK 169
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL H+ADP
Sbjct: 170 NGRLAMFSMFGFFVQAIVTGKGPVENLFDHIADP 203
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 39/195 (20%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
PE+L+G +PGD+G+DP GL E++H RWAMLGAAG IPE K G
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 62
Query: 120 TPS--WYTAG-------ELEYFTDTTTLFIVEMIFIGWAE--GRRWADIIKPGCVNTDPI 168
P W+ G L YF ++ + ++ + G + II
Sbjct: 63 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRII---------- 112
Query: 169 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
N L D +PGG FDPLG S P++ L+ KEIKNGRLAM +++G + Q T
Sbjct: 113 ---NGLDLEDKLHPGG-PFDPLGLAS-DPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVT 167
Query: 229 GTGPIDNLIAHLADP 243
G GP++NL HL+DP
Sbjct: 168 GEGPVENLSKHLSDP 182
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 102/214 (47%), Gaps = 47/214 (21%)
Query: 61 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
PNR W P ST P +L G GD+G+D GL E++H RWAMLGA G
Sbjct: 42 PNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALG 101
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWA 149
PELL K G+ W+ AG L Y +++ + ++I +G
Sbjct: 102 CITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLV 161
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R P DP++P G FDPLG P+ EL+ KEIK
Sbjct: 162 EGYRVNG--GPAGEGLDPLYP-------------GEAFDPLGLAD-DPDTFAELKVKEIK 205
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GPI NL AHL+DP
Sbjct: 206 NGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDP 239
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 118/260 (45%), Gaps = 61/260 (23%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G R+ + P + +W+ P
Sbjct: 7 QQSAFAGQTALKQLNELVRKTGGAGKGRTTMRRTVKSAP-QSIWYGPDRPKYLGPFSEQI 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ V+++ +G+ EG R P
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DPI YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G +
Sbjct: 184 GLDPI------------YPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GPI NL H+ADP
Sbjct: 230 QAIVTGKGPIQNLYDHVADP 249
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R L+ PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 53 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 112
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL + G+ W+ AG L+Y + + ++ +++ +G
Sbjct: 113 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 172
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DP+ YPGG FDPLG PE EL+ KE+K
Sbjct: 173 EGYRIAG--GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELK 216
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL H+ADP
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 250
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 104/215 (48%), Gaps = 45/215 (20%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP + F P +L G GD+G+D GL E++H RWAMLGA
Sbjct: 32 PDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAMLGAL 91
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
G PELL K G+ W+ AG L Y + + V+++ +G
Sbjct: 92 GCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVLLMGA 151
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R A+ PG D D YPGG FDPLG P+ + EL+ KEI
Sbjct: 152 AESYR-ANGGAPGGFGED----------LDSLYPGGA-FDPLGLAD-DPDTLAELKVKEI 198
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM ++ G + Q I TG GPI NL AHL+DP
Sbjct: 199 KNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDP 233
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 109/225 (48%), Gaps = 46/225 (20%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP + F P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 39 PDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWAMLGAL 98
Query: 105 GIFIPELLTKL-GI-LNTPSWYTAGE---------------LEYFTDTTTLFIVEMIFIG 147
G PE+L K G+ W+ AG L + +V+++ +G
Sbjct: 99 GCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQVLLMG 158
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
E R N + P+ G D YPGG FDPLG P+ + EL+ KE
Sbjct: 159 AVEIYR---------ANGEG--PSGFGEGQDNLYPGGA-FDPLGLAD-DPDTLAELKVKE 205
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+KNGRLAM++++G + Q I TG GP+DNL+ HL +PG +A +
Sbjct: 206 LKNGRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEPGEFNFYANY 250
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 124/264 (46%), Gaps = 55/264 (20%)
Query: 17 SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAA------DPNRPLWF-PG 69
S+ + + AG T L +L + GA G ++ + +A P+RP + P
Sbjct: 4 SAIQQSAFAGQTALKQL--NELVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGPF 61
Query: 70 STP-PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
S P +L G PGD+G+D GL E++H RWAMLGA G PE+L K
Sbjct: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKN 121
Query: 116 GI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + ++ V+++ +G+ EG R
Sbjct: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--G 179
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DPI YPGG FDPLG P+ EL+ KE+KNGRLAM ++
Sbjct: 180 PLGEGLDPI------------YPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMF 225
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GPI NL H+ADP
Sbjct: 226 GFFVQAIVTGKGPIQNLYDHVADP 249
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 56/253 (22%)
Query: 31 SFLGGKKLK---LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPEWLDGS 79
SFLG + +R+ G + G ++ + +A P+RP + P +L G
Sbjct: 11 SFLGTAPRRDDVVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 70
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYT 125
PGD+G+D GL E++H RWAMLGA G PE+L+K G+ W+
Sbjct: 71 FPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 130
Query: 126 AGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
AG L+Y + ++ V+++ +G+ EG R V P+
Sbjct: 131 AGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG- 180
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 181 ----EGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 234
Query: 231 GPIDNLIAHLADP 243
GPI+NL H+ DP
Sbjct: 235 GPIENLFDHVTDP 247
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 103/215 (47%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G + GD+G+DP GL E++H RWAMLG
Sbjct: 68 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLG 127
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGEL-------EYFTDTTTLFIV-----EMIFIGW 148
AAG IPE L K G P W+ G L YF + +V E++ +G
Sbjct: 128 AAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVGEVVLLGG 187
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPL PE+ L+ KEI
Sbjct: 188 AEYYRI----------------TNGLDFEDKLHPGG-PFDPLDLAK-DPEQGALLKVKEI 229
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM ++ + Q TG GP++NL HL+DP
Sbjct: 230 KNGRLAMFSMFAFFIQAYVTGEGPVENLSKHLSDP 264
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 107/214 (50%), Gaps = 49/214 (22%)
Query: 62 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
+RP + F G TP +L+G GD+G+D GL E++H RWAMLGA G
Sbjct: 55 DRPKYLGPFSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALG 113
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL K G+ W+ AG L+Y + + ++ ++I +G
Sbjct: 114 CVTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAV 173
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P TDPI YPGG FDPLG P+ EL+ KEIK
Sbjct: 174 EGYRVAG--GPLGDVTDPI------------YPGGS-FDPLGLAD-DPDTFAELKVKEIK 217
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|37780998|gb|AAP35043.1| chlorophyll a/b binding protein, partial [Vitis vinifera]
Length = 166
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 92/163 (56%), Gaps = 12/163 (7%)
Query: 101 LGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIGWAEG 151
LGA G PE+L KLG++ + W+ AG Y+ D TLF+ EM +G+AE
Sbjct: 1 LGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAEH 60
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
RR+ D PG + K G D YPGG F+PLG+G + +K+L+ KE+K
Sbjct: 61 RRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDE-KSLKDLKLKEVK 119
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
NGRLAMLA++G + Q TG GP+ NL+ HLADP + + +
Sbjct: 120 NGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSL 162
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 110/216 (50%), Gaps = 50/216 (23%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 65 PSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 124
Query: 120 --TPSWYTAGELEYFTDTTTLFI----------------VEMIFIGWAEGRRWADIIKPG 161
P W+ AG + F+D ++ +++ +G EG R + PG
Sbjct: 125 FKEPVWFKAGA-QIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL--PG 181
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
+ G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G
Sbjct: 182 VGD-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGF 228
Query: 222 WFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
+ Q I TG GP++NL+ HLADP +A V+A FTP
Sbjct: 229 FVQAIVTGKGPLENLLDHLADPVANNAWVYATKFTP 264
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 120/260 (46%), Gaps = 63/260 (24%)
Query: 42 KNGATAGTRSVSVSAAAAD-----------PNRPLW---FPGSTPPEWLDGSLPGDFGFD 87
K+ A + R V+V++ AA P+RP + F P +L G PGD+G+D
Sbjct: 6 KSAARSSVRPVTVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWD 65
Query: 88 PLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE---- 128
GL E++H RWAMLGA G PELL+K ++ W+ AG
Sbjct: 66 TAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFA 125
Query: 129 ---LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L Y + + +++ +G AE R N P+ G
Sbjct: 126 EGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR---------ANGGPLG-----EGL 171
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D +PGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 172 DPLHPGGA-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLS 229
Query: 238 AHLADPGHATVFA---AFTP 254
HLA+P FA FTP
Sbjct: 230 DHLANPSAVNAFAYATKFTP 249
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 108/220 (49%), Gaps = 49/220 (22%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
F G TP +L G PGD+G+D GL E++H RWAMLG G +PELL
Sbjct: 64 FSGQTP-SYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLGTVGCIVPELLE 122
Query: 114 KLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADI 157
+ G+ + W+ AG L Y D + ++I +G EG R +
Sbjct: 123 RNGVKIGEAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQVILMGAIEGYRISG- 181
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
P TDP+ YPGG FDPL PE+ L+ KEIKNGRLAM A
Sbjct: 182 -GPLGEPTDPL------------YPGG-NFDPLHLAD-DPEEFAILKVKEIKNGRLAMFA 226
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFA-AFTP 254
++G + Q I TG GP++NL HLADP +A FA AF P
Sbjct: 227 MLGFYVQAIVTGKGPLENLYDHLADPFKNNAWAFATAFDP 266
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 115/259 (44%), Gaps = 91/259 (35%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIV--- 94
+RPLWFPG+ P++LDGSL GD+GFDP GL EI+
Sbjct: 53 DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTR 112
Query: 95 ------------------------HC-----RWAMLGAAGIFIPELLTKLGILNTPSWYT 125
C RWAML G E LT + +W
Sbjct: 113 FETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQD 166
Query: 126 AGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
AG++E + +TL +E++ IG+ E +R A++ P +L
Sbjct: 167 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELD-----------PEKRL 215
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG +FDPLG S PEK + L+ EIK+ RLAM+A +G Q TG GP++
Sbjct: 216 ------YPGGSYFDPLGLAS-DPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 268
Query: 235 NLIAHLADPGHATVFAAFT 253
N HL+DP H T+F F+
Sbjct: 269 NWATHLSDPLHTTIFDTFS 287
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 127/261 (48%), Gaps = 56/261 (21%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST 71
++ P ++ SR V G+++A ++ +R+ T + S S+ A P F G T
Sbjct: 16 SLLKPVNELSRKV-GSSEA------RVTMRR---TVKSTSDSIWYGADRPKYLGPFSGET 65
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
P +L G GD+G+D GL E++H RWAMLGA G PELL K G+
Sbjct: 66 P-SYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 124
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAG--GPLG 182
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
TDPI YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G +
Sbjct: 183 EITDPI------------YPGGS-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFF 228
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 229 VQAIVTGKGPLENLNDHLADP 249
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 100/200 (50%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL++ G+
Sbjct: 33 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 92
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 93 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 150
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 151 VEDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 196
Query: 224 QHIYTGTGPIDNLIAHLADP 243
I TG GP++NL HLADP
Sbjct: 197 XAIVTGKGPLENLADHLADP 216
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 112/248 (45%), Gaps = 55/248 (22%)
Query: 46 TAGTRSVSVSAAAA----DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
T RS V AA P+RP + F P +L G PGD+G+D GL
Sbjct: 16 TVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETF 75
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTT 137
E++H RWAMLGA G PELL K GI W+ AG L Y +
Sbjct: 76 KRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENL 135
Query: 138 L--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ +++ +G AE R N P+ G D +PGG FDP
Sbjct: 136 IHAQSIIATLAFQVVVMGLAEAYR---------ANGGPLG-----EGLDPLHPGGA-FDP 180
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
LG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI NL HLA+P F
Sbjct: 181 LGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAF 239
Query: 250 A---AFTP 254
A FTP
Sbjct: 240 AYATKFTP 247
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 104/204 (50%), Gaps = 28/204 (13%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G + GD+G+DP GL E++H RWAMLG
Sbjct: 65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLG 124
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTL-FIVEMIFIGWAEGRRWADIIK 159
AAG IPE L K G P W+ G L D TL + + I I ++
Sbjct: 125 AAGFIIPEALNKYGANCGPEAVWFKTGAL--LLDGNTLNYFGKNIPINLVLAVVAEVVLL 182
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
G + N L D +PGG FDPLG PE+ L+ KEIKNGRLAM A++
Sbjct: 183 GGA---EYYRITNGLDFEDKLHPGG-PFDPLGLAK-DPEQGALLKVKEIKNGRLAMFAML 237
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q TG GP++NL HL+DP
Sbjct: 238 GFFIQAYVTGEGPVENLAKHLSDP 261
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 115/239 (48%), Gaps = 50/239 (20%)
Query: 30 ASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGF 86
A G ++ +RK+ S S S P+R L+ F G PP +L G PGD+G+
Sbjct: 33 AGVHGESRVTMRKSATKKSFASASPSPWYG-PDRVLYLGPFSGE-PPSYLTGEFPGDYGW 90
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++HCRWAMLGA G PELL + G+ W+ AG
Sbjct: 91 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 150
Query: 129 ---LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 151 EGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVTDPI--------- 199
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 236
YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 200 ---YPGGS-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 112/248 (45%), Gaps = 55/248 (22%)
Query: 46 TAGTRSVSVSAAAA----DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
T RS V AA P+RP + F P +L G PGD+G+D GL
Sbjct: 13 TVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETF 72
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTT 137
E++H RWAMLGA G PELL K GI W+ AG L Y +
Sbjct: 73 KRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNENL 132
Query: 138 L--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ +++ +G AE R N P+ G D +PGG FDP
Sbjct: 133 VHAQSIIATLAFQVVVMGLAEAYR---------ANGGPLG-----EGLDPLHPGGA-FDP 177
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
LG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI NL HLA+P F
Sbjct: 178 LGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAF 236
Query: 250 A---AFTP 254
A FTP
Sbjct: 237 AYATKFTP 244
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 56/253 (22%)
Query: 31 SFLGGKKLK---LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPEWLDGS 79
SFLG + +R+ G + G ++ + +A P+RP + P +L G
Sbjct: 11 SFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 70
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYT 125
PGD+G+D GL E++H RWAMLGA G PE+L+K G+ W+
Sbjct: 71 FPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 130
Query: 126 AGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
AG L+Y + ++ V+++ +G+ EG R V P+
Sbjct: 131 AGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG- 180
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
G D YP G FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 181 ----EGLDKVYPSGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 234
Query: 231 GPIDNLIAHLADP 243
GPI+NL H+ADP
Sbjct: 235 GPIENLFDHVADP 247
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G + GD+G+DP GL E++H RWAMLG
Sbjct: 65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLG 124
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTL-FIVEMIFIGWAEGRRWADIIK 159
AAG IPE L K G P W+ G L D TL + + I I ++
Sbjct: 125 AAGFIIPEALNKYGANCGPEAVWFKTGAL--LLDGNTLNYFGKNIPINLVLAVVAEVVLL 182
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
G ++ N L D +PGG FDPLG PE+ L+ KEIKNGRLAM A++
Sbjct: 183 GG---SEYYRITNGLDFEDKLHPGG-PFDPLGLAK-DPEQGALLKVKEIKNGRLAMFAML 237
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q TG GP++NL HL+DP
Sbjct: 238 GFFIQAYVTGEGPVENLAKHLSDP 261
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 108/235 (45%), Gaps = 55/235 (23%)
Query: 48 GTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLPGDFGFDPLGL------ 91
G V+ A + +W+ P P +L G GD+G+D GL
Sbjct: 29 GNVQARVTMRKASSSDSIWYGADRPKYLGPLSGETPSYLTGEFAGDYGWDTAGLSSDPET 88
Query: 92 -------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT 136
E++H RWAMLGA G PELL K G+ W+ AG L+Y + +
Sbjct: 89 FARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 137 --------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 188
++ ++I +G EG R A P TDPI YPGG FD
Sbjct: 149 LVHAQSILAIWASQVILMGAVEGYRVAG--GPLGEVTDPI------------YPGGS-FD 193
Query: 189 PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
PLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 194 PLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADP 247
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 120/251 (47%), Gaps = 43/251 (17%)
Query: 28 TKASFLGGKKLK-----LRKNGATAG---TRSVSVSAAAAD----PNRPLWFP--GSTPP 73
+++F G LK +RK G+ G T +V +A P+RP + P
Sbjct: 7 QQSAFAGQTALKPQNELVRKVGSFGGGHITMRRTVKSAPESIWYGPDRPKYLGPFSEQTP 66
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LN 119
+L G PGD+G+D GL E++H RWAMLGA G PE+L K G+
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFG 126
Query: 120 TPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
W+ AG L+Y + + ++ I WA + ++ G V +
Sbjct: 127 EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----SQVVLMGFVEGYRVGGGP 180
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
G D YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP
Sbjct: 181 LGWGLDKIYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 233 IDNLIAHLADP 243
I+NL HLADP
Sbjct: 239 IENLYDHLADP 249
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 106/215 (49%), Gaps = 48/215 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L+G PGD+G+D GL E++H RWAMLGA G PE+L K +G+
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVE 126
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R +
Sbjct: 127 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGL----- 181
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 182 ---DGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
Query: 223 FQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
Q I TG GP++NL HL DP +A VFA F P
Sbjct: 232 VQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAP 266
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P WL LPG++GFDPL L E++H RWAMLG AG ELL
Sbjct: 39 WLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL 98
Query: 113 TKLGILNTPSWYTAGE------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
+ P W G +E D L E + + AEG+R
Sbjct: 99 GYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRG------------ 146
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
V YPGG FDPLG+ S K EL+ KEIKNGRLAM+A +G QH
Sbjct: 147 --------DAGGVVYPGGA-FDPLGFAKDS-SKSGELKLKEIKNGRLAMVAFLGFVAQHA 196
Query: 227 YTGTGPIDNLIAHLADP 243
TG GPI L HLA+P
Sbjct: 197 ATGKGPIAALGEHLANP 213
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 121/264 (45%), Gaps = 52/264 (19%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW---FP 68
A+SSPS + + G ++ +RK G S S P+R + F
Sbjct: 7 ALSSPSFAGMAVKVAPSSSELFGSGRISMRKTGKKPAASSGS---PWYGPDRVKYLGPFS 63
Query: 69 GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKL 115
G P +L G PGD+G+D GL E++H RWAMLGA G PELL +
Sbjct: 64 GEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 122
Query: 116 GI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIK 159
G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--G 180
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
P DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++
Sbjct: 181 PLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKELKNGRLAMFSMF 226
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q I TG GP++NL LADP
Sbjct: 227 GFFVQAIVTGKGPLENLADPLADP 250
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 101/201 (50%), Gaps = 45/201 (22%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H WAMLGA G PELL++ G+
Sbjct: 6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVK 65
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 66 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLG 123
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
TDPI YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 124 EVTDPI------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFF 169
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 170 VQAIVTGKGPLENLADHLADP 190
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 104/204 (50%), Gaps = 28/204 (13%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G + GD+G+DP GL E++H RWAMLG
Sbjct: 65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLG 124
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTL-FIVEMIFIGWAEGRRWADIIK 159
AAG IPE L K G P W+ G L D TL + + I I ++
Sbjct: 125 AAGFIIPEALNKYGANCGPEAVWFKTGAL--LLDGNTLNYFGKNIPINLVLAVVAEVVLL 182
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
G + N L D +PGG FDPLG PE+ L+ KEIKNGRLAM A++
Sbjct: 183 GGA---EYYRITNGLDFEDKLHPGG-PFDPLGLAK-DPEQGALLKVKEIKNGRLAMFAML 237
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q TG GP++NL HL+DP
Sbjct: 238 GFFIQAYVTGEGPVENLAKHLSDP 261
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P WL LPG++GFDPL L E++H RWAMLG AG ELL
Sbjct: 35 WLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL 94
Query: 113 TKLGILNTPSWYTAGE------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
+ P W G +E D L E + + AEG+R
Sbjct: 95 GYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRG------------ 142
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
V YPGG FDPLG+ S K EL+ KEIKNGRLAM+A +G QH
Sbjct: 143 --------DAGGVVYPGGA-FDPLGFAKDS-SKSGELKLKEIKNGRLAMVAFLGFVAQHA 192
Query: 227 YTGTGPIDNLIAHLADP 243
TG GPI L HLA+P
Sbjct: 193 ATGKGPIAALGEHLANP 209
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 113/259 (43%), Gaps = 91/259 (35%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIV--- 94
+RPLW+PG+ P+WLDGSL GD+GFDP GL EI+
Sbjct: 50 DRPLWYPGAVAPDWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEIIGTR 109
Query: 95 ------------------------HC-----RWAMLGAAGIFIPELLTKLGILNTPSWYT 125
C RWAML G E LT + +W
Sbjct: 110 TEVADVKATPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV------TWQD 163
Query: 126 AGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
AG++E + TTL +E++ IG+ E +R A++ P +L
Sbjct: 164 AGKVELVEGSSYLGQPLPFSMTTLIWIEVLVIGFIEFQRNAELD-----------PEKRL 212
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG +FDPLG + PEK L+ EIK+ RLAM+A +G Q TG GP++
Sbjct: 213 ------YPGGKYFDPLGL-AADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 265
Query: 235 NLIAHLADPGHATVFAAFT 253
N HL+DP H T+ FT
Sbjct: 266 NWATHLSDPLHTTIIDTFT 284
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 108/219 (49%), Gaps = 38/219 (17%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R L+ P S P++L+G L GD+G+DPLGL E++H RWAML
Sbjct: 25 PDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLA 84
Query: 103 AAGIFIPELLTKLGI-LNTPSWY-------TAGELEYF-------TDTTTLFIVEMIFIG 147
AAGI IPE L G + +W+ G L YF ++ LF V + +G
Sbjct: 85 AAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVG 144
Query: 148 WAEGRRWADIIKPGCVNTDP---IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+ G P F ++ G D YPGG FDPLG PE ++EL+
Sbjct: 145 LMGAVEFYRRNGSGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLAD-DPEVLQELK 202
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KEIKNGRLAM++V+G Q TG GP N H+ADP
Sbjct: 203 VKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADP 241
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 116/250 (46%), Gaps = 56/250 (22%)
Query: 45 ATAGTRSVSVSAAAA----DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------ 91
AT +R+ V AA P+RP + F P +L G PGD+G+D GL
Sbjct: 16 ATVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPET 75
Query: 92 -------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDT 135
E++H RWAMLGA G PELL+K ++ W+ AG L Y +
Sbjct: 76 FKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE 135
Query: 136 TTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 187
+ +++ +G AE R N P+ G D +PGG F
Sbjct: 136 NLVHAQSIIATLAFQVVVMGLAEAYR---------ANGGPLG-----EGLDPLHPGGA-F 180
Query: 188 DPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
DPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLA+P
Sbjct: 181 DPLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
Query: 248 VFA---AFTP 254
FA FTP
Sbjct: 240 AFAYATKFTP 249
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 104/214 (48%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 49 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 108
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PE+L K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 109 CVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFV 168
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D YPGG FDPLG P+ EL+ KE+K
Sbjct: 169 EGYR---------VGGGPLG-----EGLDKVYPGGA-FDPLGLAD-DPDTAAELKVKELK 212
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GPI+NL H+ADP
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 246
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 111/234 (47%), Gaps = 40/234 (17%)
Query: 41 RKNGATAGTRSVSVSAAAADPNRPLWFPGSTP----------PEWLDGSLPGDFGFDPLG 90
RK G R+V A+ P+ +W+ P P +L G PGD+G+D G
Sbjct: 27 RKVGNLGEARTVMRRTRASTPDS-IWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAG 85
Query: 91 L-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------L 129
L E++H RWAMLGA G PELL K GI W+ AG L
Sbjct: 86 LSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGIKFGEAVWFKAGSQIFKEGGL 145
Query: 130 EYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+Y + + ++ I WA + +I G V + G D YPGG FDP
Sbjct: 146 DYLGNPNLVHAQSILAI-WA-----SQVILMGAVEGYRVGGGPLGEGLDKIYPGGA-FDP 198
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
LG P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ HL +P
Sbjct: 199 LGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFTQAIVTGKGPIENLLDHLDNP 251
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 104/215 (48%), Gaps = 50/215 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P PE+L+G +PGD+G+DP GL E++H RWAMLG
Sbjct: 87 PDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLG 146
Query: 103 AAGIFIPELLTKLGILNTPS--WYT-------AGELEYFTDTTTLFIVEMIFI-----GW 148
AAG IPE K G P W+ G L YF + + ++ + G
Sbjct: 147 AAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGG 206
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 207 AEYYR----------------ATNGLNFDDKLHPGGP-FDPLGLAK-DPDQFALLKVKEI 248
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KNGRLAM +++G + Q TG GP++NL AHL+DP
Sbjct: 249 KNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDP 283
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L+G +PG++G+DP GL E++H RWAMLG
Sbjct: 71 PDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 130
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTL-FIVEMIFIGWAEGRRWADIIK 159
AAG IPE K G P W+ G L D TL + + I I ++
Sbjct: 131 AAGFIIPEAFNKFGANCGPEAVWFKTGAL--LLDGNTLNYFGKNIPINLILAVVAEVVLV 188
Query: 160 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 219
G I N L D +PGG FDPLG P++ L+ KEIKNGRLAM +++
Sbjct: 189 GGAEYYRII---NGLDLEDKLHPGG-PFDPLGLAK-DPDQAAILKVKEIKNGRLAMFSML 243
Query: 220 GAWFQHIYTGTGPIDNLIAHLADP 243
G + Q TG GP++NL AHL+DP
Sbjct: 244 GFFIQAYVTGQGPVENLAAHLSDP 267
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 103/229 (44%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 99
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGW 148
G PELL K G W+ AG L+Y + ++I +G
Sbjct: 100 GCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGL 159
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KE+
Sbjct: 160 IEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEL 203
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GP+ NL HLA+P FA FTP
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 252
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 118/260 (45%), Gaps = 61/260 (23%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G R+ + P + +W+ P
Sbjct: 7 QQSAFTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAP-QSIWYGPDRPKYLGPFSEQI 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ V+++ +G+ EG R P
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGE 183
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DPI YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G +
Sbjct: 184 GLDPI------------YPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GPI NL H+ADP
Sbjct: 230 QAIVTGKGPIQNLYDHVADP 249
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 105/211 (49%), Gaps = 45/211 (21%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 33 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 92
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 93 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLG 150
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 151 EVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFF 196
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
Q I TG GP++NL H+ADP + +A T
Sbjct: 197 VQAIVTGKGPLENLADHIADPVNNNAWAYAT 227
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 115/243 (47%), Gaps = 29/243 (11%)
Query: 24 VAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD---PNRPLWF-----PGSTPPEW 75
+GA K L KK + ATA + + A P+R ++ S PE+
Sbjct: 28 TSGAQKIVSLFSKKPAQKAKPATASSSGSDIGDELAKWYGPDRRIFLLEGLLDRSEVPEY 87
Query: 76 LDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS 122
L+G +PGD+G+DP GL E++H RWAMLGAAG IPE K G P
Sbjct: 88 LNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPE 147
Query: 123 --WYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
W+ G L +T F I I A ++ G I N L
Sbjct: 148 AVWFKTGALLLEGNTLNYF-GNSIPINLAVAVVAEVVLVGGAEYYRII---NGLDLEGKL 203
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
+PGG FDPLG S P++ L+ KEIKNGRLAM ++G + Q TG GP++NL HL
Sbjct: 204 HPGG-PFDPLGLAS-DPDQAAPLKVKEIKNGRLAMFPMLGFFIQAYVTGEGPVENLAKHL 261
Query: 241 ADP 243
+DP
Sbjct: 262 SDP 264
>gi|50313237|gb|AAT74560.1| Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length = 254
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 121/248 (48%), Gaps = 52/248 (20%)
Query: 21 SRSVAGATKASFLGGKKLKLRKNGATAGT-------RSVSVSAAAADPNRPLWFPGST-- 71
+ +V +SFL G K + G+ GT +++ V+AAAA P + W P
Sbjct: 2 TEAVLSGLGSSFLPGGKRSITALGSGVGTGAARFGRKTLIVAAAAAQPKKS-WIPAVKGG 60
Query: 72 ----PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PEWLDGSLPGDFGFDPLGL E++H RWAM GIF+ + +
Sbjct: 61 GNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 120
Query: 115 LGILNTPSWYTAG----ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
+ W+ AG + F+ +L +++ +GW E +RW D P + + P
Sbjct: 121 V------PWFEAGADPRAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATP 173
Query: 171 NNKLTGT------DVGYPGGLWFDPLGWGSGS--------PEKVKELRTKEIKNGRLAML 216
++ D GYPGG +FDPLG + EK++ L+ EIK+ RLAML
Sbjct: 174 WSRTAENFANYTGDQGYPGGRFFDPLGLAGKTRDGVYEPDREKLERLKLAEIKHSRLAML 233
Query: 217 AVMGAWFQ 224
A++ +F+
Sbjct: 234 AMLIFYFE 241
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 118/252 (46%), Gaps = 45/252 (17%)
Query: 28 TKASFLGGKKLK-----LRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP---------- 72
+++F G LK +RK G+ G R V++ + +W+ P
Sbjct: 7 QQSAFAGQTALKQPNDLVRKVGSFGGGR-VTMRRTVKSAPQSIWYGPDRPKFLGPFSEQT 65
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
W+ AG L+Y + + ++ I WA ++ V P+
Sbjct: 126 GESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGFVEGYRVGGGPLG-- 182
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
G D YPGG FDPLG P+ EL+ KE+KNGRLA ++ G + Q I TG G
Sbjct: 183 ---EGLDPIYPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLATFSMFGFFVQAIVTGKG 237
Query: 232 PIDNLIAHLADP 243
P++NL+ HLADP
Sbjct: 238 PVENLLDHLADP 249
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 109
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PE+L+K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 110 CVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFI 169
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D YPGG FDPLG P+ EL+ KE+K
Sbjct: 170 EGYR---------VGGGPLG-----EGLDKIYPGGA-FDPLGLAD-DPDTAAELKVKELK 213
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL H+ADP
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPVENLFDHVADP 247
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 121/252 (48%), Gaps = 53/252 (21%)
Query: 25 AGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSL 80
A + + LG ++ +RK TA + V+ S + P+R + F G P +L G
Sbjct: 7 AAPSNSELLGNGRVSMRK---TAAPKKVAPSGSPWYGPDRVKYLGPFSGEAP-SYLTGEF 62
Query: 81 PGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTA 126
PGD+G+D GL E++H RWAMLGA G PELL + G+ W+ A
Sbjct: 63 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 122
Query: 127 GE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
G L+Y + + ++ ++I +G EG R A P DP+
Sbjct: 123 GAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPL--- 177
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 178 ---------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 226
Query: 232 PIDNLIAHLADP 243
P++NL LADP
Sbjct: 227 PLENLADRLADP 238
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 114/259 (44%), Gaps = 91/259 (35%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHCR 97
+RPLWFPG+ PE+LDGSL GD+GFDP+GL +I+ R
Sbjct: 50 DRPLWFPGAVAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTR 109
Query: 98 --------------------------------WAMLGAAGIFIPELLTKLGILNTPSWYT 125
WAML G E LT + +W
Sbjct: 110 FEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQD 163
Query: 126 AGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
AG++E + TTL +E++ IG+ E +R A++ P +L
Sbjct: 164 AGKVELENGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQRNAELD-----------PEKRL 212
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG +FDPLG S PEK + L+ EIK+ RLAM+ +G Q TG GP++
Sbjct: 213 ------YPGGSYFDPLGLAS-DPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLN 265
Query: 235 NLIAHLADPGHATVFAAFT 253
N HL+DP H T+F F+
Sbjct: 266 NWATHLSDPLHTTIFDTFS 284
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 99/200 (49%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ V++I +G EG R A P
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGE 183
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 184 VVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKELKNGRLAMFSMFGFFV 229
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP+ NL H+ADP
Sbjct: 230 QAIVTGKGPLKNLADHIADP 249
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 100/201 (49%), Gaps = 45/201 (22%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 33 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGVK 92
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ +++ +G EG R A P
Sbjct: 93 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLG 150
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 151 EIVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFF 196
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 197 VQAIVTGKGPLENLADHLADP 217
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 123/251 (49%), Gaps = 58/251 (23%)
Query: 23 SVAGATKASFLGGKKLKLRKNGATA------------GTRSVSVSAAAADPNRPLWFPGS 70
+V+GA S LG L K GATA G +++ V+AAAA P + W P
Sbjct: 4 AVSGAV-LSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKS-WIPAV 61
Query: 71 T------PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
PEWLDGSLPGDFGFDPLGL E++H RWAM GIF+ +
Sbjct: 62 KGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 121
Query: 112 LTKLGILNTPSWYTAG----ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP 167
+ + +W+ AG + F+ +L +++ +GW E +RW D P + +
Sbjct: 122 WSGV------AWFEAGAQPDAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEW 174
Query: 168 IFPNNKLTGT------DVGYPGGLWFDPLGWGSGSP--------EKVKELRTKEIKNGRL 213
P +K D GYPGG +FDPLG + EK++ L+ EIK+ RL
Sbjct: 175 ATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRL 234
Query: 214 AMLAVMGAWFQ 224
AM+A++ +F+
Sbjct: 235 AMVAMLIFYFE 245
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ W +K G DP + + L PG FDPLG G P +K R E+ +G
Sbjct: 55 KSWIPAVKGGGNFLDPEWLDGSL-------PGDFGFDPLGLGK-DPAFLKWYREAELIHG 106
Query: 212 RLAMLAVMGAWFQHIYTGT 230
R AM AV+G + ++G
Sbjct: 107 RWAMAAVLGIFVGQAWSGV 125
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 56/253 (22%)
Query: 31 SFLGGKKLK---LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPEWLDGS 79
SFLG + +R+ G + G ++ + +A P+RP + P +L G
Sbjct: 1 SFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 60
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYT 125
PGD+ +D GL E++H RWAMLGA G PE+L+K G+ W+
Sbjct: 61 FPGDYRWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 120
Query: 126 AGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
AG L+Y + ++ V+++ +G+ EG R V P+
Sbjct: 121 AGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG- 170
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 171 ----EGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 224
Query: 231 GPIDNLIAHLADP 243
GPI+NL H+ADP
Sbjct: 225 GPIENLFDHVADP 237
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 106/229 (46%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP + F P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 35 PDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 94
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
G PELL K GI W+ AG L Y + + +++ +G
Sbjct: 95 GCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGL 154
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N P+ G D +PGG FDPLG P+ EL+ KEI
Sbjct: 155 AEAYR---------ANGGPLG-----EGLDPLHPGGA-FDPLGLAD-DPDTFAELKVKEI 198
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GPI NL HLA+P FA FTP
Sbjct: 199 KNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTP 247
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 106/229 (46%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP + F P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 15 PDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 74
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
G PELL K GI W+ AG L Y + + +++ +G
Sbjct: 75 GCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGL 134
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N P+ G D +PGG FDPLG P+ EL+ KEI
Sbjct: 135 AEAYR---------ANGGPLG-----EGLDPLHPGGA-FDPLGLAD-DPDTFAELKVKEI 178
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLAM ++ G + Q I TG GPI NL HLA+P FA FTP
Sbjct: 179 KNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTP 227
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 123/267 (46%), Gaps = 51/267 (19%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A A+SS + + + G + +RK A A + VS + P+R +
Sbjct: 4 ATMALSSSTFAGKAVKLSPSSSEITGNGRFTMRKTAAKA--KPVSSGSPWYGPDRVKYLG 61
Query: 67 -FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
F G P +L G PGD+G+D GL E++HCRWA+L G PELL
Sbjct: 62 PFSGEAP-SYLTGEKPGDYGWDTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELL 120
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
++ G+ W+ G L+Y + + ++ +++ +G EG R A
Sbjct: 121 SRNGVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P DP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 181 --GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL HLADP
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 115/247 (46%), Gaps = 56/247 (22%)
Query: 48 GTRSVSVSAAAA----DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
G+R+ V AA P+RP + F P +L G PGD+G+D GL
Sbjct: 20 GSRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKR 79
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTTTL 138
E++H RWAMLGA G PELL+K ++ W+ AG L Y + +
Sbjct: 80 YRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLV 139
Query: 139 --------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 190
+++ +G AE R N P+ G D +PGG FDPL
Sbjct: 140 HAQSIIATLAFQVVVMGLAEAYR---------ANGGPLG-----EGLDPLHPGGA-FDPL 184
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
G P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLA+P FA
Sbjct: 185 GLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFA 243
Query: 251 ---AFTP 254
FTP
Sbjct: 244 YATKFTP 250
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 100/200 (50%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 92
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 150
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 151 VVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 196
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 197 QAIVTGKGPLENLADHLADP 216
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 126/278 (45%), Gaps = 61/278 (21%)
Query: 1 MAS--VCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAA 58
MAS + A+ V A +P + R+ A A+ LR A A R +
Sbjct: 1 MASTIMAATSRVVAAKTPFLGQGRAAANASP----------LRDVAAAASGRITMGNDLW 50
Query: 59 ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R + F TP +L G PGD+G+D GL E++H RWAMLG
Sbjct: 51 YGPDRVKYLGPFSAQTP-SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
Query: 103 AAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTTTLFI--------VEMIF 145
A G PE+L K ++ P W+ AG L+Y + + ++I
Sbjct: 110 ALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVIL 169
Query: 146 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 205
+G EG R + D + N L YPGG +FDPLG P EL+
Sbjct: 170 MGLVEGFRINGL--------DGVGEGNNL------YPGGQYFDPLGLAD-DPVTFAELKV 214
Query: 206 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KEIKNGRLAM ++ G + Q I TG GP++NL+ HL DP
Sbjct: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDP 252
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 115/249 (46%), Gaps = 56/249 (22%)
Query: 46 TAGTRSVSVSAAAA----DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
T +R+ V AA P+RP + F P +L G PGD+G+D GL
Sbjct: 16 TVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETF 75
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTT 136
E++H RWAMLGA G PELL+K ++ W+ AG L Y +
Sbjct: 76 KRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNEN 135
Query: 137 TL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 188
+ +++ +G AE R N P+ G D +PGG FD
Sbjct: 136 LVHAQSIIATLAFQVVVMGLAEAYR---------ANGGPLG-----EGLDPLHPGGA-FD 180
Query: 189 PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
PLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLA+P
Sbjct: 181 PLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNA 239
Query: 249 FA---AFTP 254
FA FTP
Sbjct: 240 FAYATKFTP 248
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 100/200 (50%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF 92
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 150
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 151 VVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 196
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 197 QAIVTGKGPLENLADHLADP 216
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 109/214 (50%), Gaps = 45/214 (21%)
Query: 48 GTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGL---------- 91
G +++ V+AAAA P + W P PEWLDGSLPGDFGFDPLGL
Sbjct: 40 GRKTLIVAAAAAQPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWY 98
Query: 92 ---EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG----ELEYFTDTTTLFIVEMI 144
E++H RWAM GIF+ + + + +W+ AG + F+ +L +++
Sbjct: 99 REAELIHGRWAMAAVLGIFVGQAWSGV------AWFEAGAQPDAIAPFS-FGSLLGTQLL 151
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPLGWGSGSP- 197
+GW E +RW D P + + P +K D GYPGG +FDPLG +
Sbjct: 152 LMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRD 211
Query: 198 -------EKVKELRTKEIKNGRLAMLAVMGAWFQ 224
EK++ L+ EIK+ RLAM+A++ +F+
Sbjct: 212 GVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFE 245
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ W +K G DP + + L PG FDPLG G P +K R E+ +G
Sbjct: 55 KSWIPAVKGGGNFLDPEWLDGSL-------PGDFGFDPLGLGK-DPAFLKWYREAELIHG 106
Query: 212 RLAMLAVMGAWFQHIYTGT 230
R AM AV+G + ++G
Sbjct: 107 RWAMAAVLGIFVGQAWSGV 125
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R L+ PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL + G+ W+ AG L+Y + + ++ +++ +G
Sbjct: 112 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAI 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DP+ YPGG FDPLG PE +++ KE+K
Sbjct: 172 EGYRVAG--GPLGEVVDPL------------YPGGT-FDPLGLAD-DPEAFADVKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 118/244 (48%), Gaps = 31/244 (12%)
Query: 23 SVAGATKASFLGGKKLK-------LRKNGATAGTRSVSVSAAAA------DPNRPLWFP- 68
+ A A ++S L G+ L ++K GA+ ++ + +A P+RP +
Sbjct: 2 ATASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGP 61
Query: 69 -GSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTA 126
P +L G PGD+G+D GL +AMLGA G PELL K G+ W+ A
Sbjct: 62 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAMLGALGCVFPELLAKTGVKFGEAVWFKA 121
Query: 127 GE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
G L+Y + + ++ I WA +I+ V P+ G D
Sbjct: 122 GAQIFSEGGLDYLGNPNLIHAQSILAI-WASQVVLMGLIEGYRVGGGPLG-----EGLDP 175
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL H
Sbjct: 176 LYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDH 233
Query: 240 LADP 243
LADP
Sbjct: 234 LADP 237
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P S P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWA 149
PELL K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 112 CTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D YPGG FDPLG P+ EL+ KE+K
Sbjct: 172 EGYR---------VGGGPL-----GEGLDPLYPGGA-FDPLGLAD-DPDSFAELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GPI NL H+ADP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 104/201 (51%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L G PGD+G+D GL E++H RWAMLGA G PE+L+K +G+
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVE 121
Query: 118 LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + ++ ++I +G EG R
Sbjct: 122 FKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYR--------- 172
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+N P + G D+ YPGG +FDPLG+ PE + EL+ KEIKNGRLAM ++ G +
Sbjct: 173 INGLP----DVGEGGDL-YPGGQYFDPLGFAD-DPETLAELKVKEIKNGRLAMFSMFGFF 226
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HL +P
Sbjct: 227 VQAIVTGKGPLENLFDHLDNP 247
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P S P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PELL K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 112 CTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D YPGG FDPLG P+ EL+ KE+K
Sbjct: 172 EGYR---------VGGGPL-----GEGLDPLYPGGA-FDPLGLAD-DPDSFAELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GPI NL H+ADP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 104/201 (51%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L G PGD+G+D GL E++H RWAMLGA G PE+L+K +G+
Sbjct: 62 PSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVE 121
Query: 118 LNTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + ++ ++I +G EG R
Sbjct: 122 FKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYR--------- 172
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+N P + G D+ YPGG +FDPLG+ PE + EL+ KEIKNGRLAM ++ G +
Sbjct: 173 INGLP----DVGEGGDL-YPGGQYFDPLGFAD-DPETLAELKVKEIKNGRLAMFSMFGFF 226
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HL +P
Sbjct: 227 VQAIVTGKGPLENLFDHLDNP 247
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 94/186 (50%), Gaps = 41/186 (22%)
Query: 82 GDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA-- 126
GDFGFDPLGL E++HCRWAML GI +PE L + W
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGFGNWVKAQEWAAVPG 60
Query: 127 GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
G+ Y + T+ ++E + I + E +R + DP
Sbjct: 61 GQATYLGNPVPWGTLPTILVIEFLAIAFVEHQR--------SMEKDP---------EKRK 103
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAH 239
YPGG FDPLG+ S P+K +EL+ KEIKNGRLA+LA +G Q Y GTGP++NL H
Sbjct: 104 YPGGA-FDPLGY-SKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATH 161
Query: 240 LADPGH 245
LADP H
Sbjct: 162 LADPWH 167
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 120/253 (47%), Gaps = 56/253 (22%)
Query: 31 SFLGGKKLK---LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPEWLDGS 79
SFLG + +R+ G + G ++ + +A P+RP + P +L G
Sbjct: 11 SFLGTAPRRDDLVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGE 70
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYT 125
PGD+G+D GL E++H RWAMLGA G PE+L+K G+ W+
Sbjct: 71 FPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFK 130
Query: 126 AGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
AG L+Y + ++ V+++ +G+ EG R V P+
Sbjct: 131 AGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG- 180
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
G D YPGG FDPLG P+ EL+ KE+KNGRLAM ++ G + Q I G
Sbjct: 181 ----EGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVRGK 234
Query: 231 GPIDNLIAHLADP 243
GPI+NL H+ DP
Sbjct: 235 GPIENLFDHVTDP 247
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 105/229 (45%), Gaps = 51/229 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 98
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGW 148
G PELL K G W+ AG L+Y + + + V++I +G
Sbjct: 99 GCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGL 158
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R P DP++P G FDPLG P+ EL+ KEI
Sbjct: 159 IEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKEI 202
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
KNGRLA ++ G + Q I TG GP+ NL HLA+P FA FTP
Sbjct: 203 KNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 111/226 (49%), Gaps = 49/226 (21%)
Query: 50 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EI 93
+ VS S+ P+R + F G +P +L G PGD+G+D GL E+
Sbjct: 5 KPVSSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 63
Query: 94 VHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------T 137
+H RWAMLGA G PELL + G+ W+ AG L+Y + +
Sbjct: 64 IHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 123
Query: 138 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 197
++ ++I +G EG R A P DP+ YPGG FDPLG P
Sbjct: 124 IWACQVILMGAVEGYRVAG--GPLGEVVDPL------------YPGGS-FDPLGLAE-DP 167
Query: 198 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
E EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 168 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 213
>gi|149392597|gb|ABR26101.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 57
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/57 (89%), Positives = 53/57 (92%)
Query: 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
K+KELRTKEIKNGRLAMLAVMGAWFQ YTGTGPIDNL AHLADPGHAT+F AFTPK
Sbjct: 1 KIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAFTPK 57
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 98/212 (46%), Gaps = 41/212 (19%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
WFPG P L GS P PLGL EI HCRWAML G+ +PE L
Sbjct: 24 WFPGQPRPAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL 83
Query: 113 TKLGILNTPSWYTA--GELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 164
+ W G+ Y + T+ +E + I +AE +R +
Sbjct: 84 GLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TME 135
Query: 165 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
DP YPGG FDPLG+ S P K +EL+ KEIKNGRLAMLA +G Q
Sbjct: 136 KDP---------EKKKYPGGA-FDPLGF-SKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 184
Query: 225 H-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 255
Y GTGP++NL HLADP H + P+
Sbjct: 185 QSAYPGTGPLENLATHLADPWHNNIGDIVIPR 216
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 91/181 (50%), Gaps = 24/181 (13%)
Query: 79 SLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS--- 122
L G+FGFDPL L E+ + RWAMLG AGI + ELL K G+ +
Sbjct: 13 DLAGNFGFDPLSLGKDEAALKWYTQAELQNGRWAMLGVAGILVQELLHKTGLGGKAADVY 72
Query: 123 WYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYP 182
W+ AG ++ TL + + WAE R D KPG +DP N + ++GYP
Sbjct: 73 WFDAGNNTFWAPKETLIAISFLLFAWAECNRAQDYFKPGSNVSDPF--GNSIKYVELGYP 130
Query: 183 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 242
G FDPL S + + KEIKNGRLAMLA +G QH P+D L HL++
Sbjct: 131 G---FDPL---SFTKNDYAGWKLKEIKNGRLAMLAFLGFVAQHNAQPGSPLDQLADHLSN 184
Query: 243 P 243
P
Sbjct: 185 P 185
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 101/214 (47%), Gaps = 47/214 (21%)
Query: 61 PNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P R W P ST P +L G GD+G+D GL E++H RWAMLGA G
Sbjct: 43 PERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALG 102
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWA 149
PELL K G+ W+ AG L Y +++ + ++I +G
Sbjct: 103 CITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLV 162
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R P DP++P G FDPLG P+ EL+ KEIK
Sbjct: 163 EGYRVNG--GPAGEGLDPLYP-------------GEAFDPLGLAD-DPDTFAELKVKEIK 206
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GPI NL AHL+DP
Sbjct: 207 NGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDP 240
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLE-------------IVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL ++H RWAMLGA G
Sbjct: 50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWAMLGALG 109
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L+K G+ W+ AG L+Y + + ++ I WA + +
Sbjct: 110 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----SQV 163
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
+ G V I G D YPGG FDPLG P+ EL+ KE+KNGRLAM +
Sbjct: 164 VLMGFVEGYRIGGGPLGEGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFS 221
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL H+ADP
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADP 247
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 94/185 (50%), Gaps = 29/185 (15%)
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYT 125
PGD+G+D GL E++HCRWAMLGA G PELL K G+ W+
Sbjct: 3 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFK 62
Query: 126 AGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTD 178
AG L+Y + + ++ I WA +I+ V P+ G D
Sbjct: 63 AGAQIFSEGGLDYLGNPNLIHAQSILAI-WACQVVLMGLIEGYRVGGGPLG-----EGLD 116
Query: 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIA 238
YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL
Sbjct: 117 PLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYD 174
Query: 239 HLADP 243
HLADP
Sbjct: 175 HLADP 179
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 118/248 (47%), Gaps = 52/248 (20%)
Query: 21 SRSVAGATKASFL-GGKKLKLRKNGATAGTRSVSVSA------AAADPNRPLWFPGS--- 70
S +V +SFL GGK+ + G S SV A AAA P + W P
Sbjct: 5 SGAVLNGLGSSFLCGGKRSRALSGIGATGIGSCSVGARKLTIVAAAQPKKS-WIPAVKGG 63
Query: 71 ---TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PEWLDGSLPGD+GFDPLGL E++H RWAM GIF+ + +
Sbjct: 64 GSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 123
Query: 115 LGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
+ W+ A G + F+ +L ++I +GW E +RW D P + + P
Sbjct: 124 I------PWFEAGADPGAIAPFS-FGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATP 176
Query: 171 NNKLTGT------DVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGRLAML 216
+K D GYPGG +FDPLG+ EK++ L+ EIK+ RLAM+
Sbjct: 177 WSKTAENFANATGDQGYPGGKFFDPLGFAGTLKNGVYIPDEEKLERLKLAEIKHARLAMI 236
Query: 217 AVMGAWFQ 224
A++ +F+
Sbjct: 237 AMLIFYFE 244
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 104/219 (47%), Gaps = 38/219 (17%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R L+ P S P +L+G L GD+G+DPLGL E++H RWAML
Sbjct: 52 PDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLA 111
Query: 103 AAGIFIPELLTKLGI-LNTPSWY-------TAGELEYF-------TDTTTLFIVEMIFIG 147
AAGI IPE L G + W+ G L YF ++ LF V I +G
Sbjct: 112 AAGILIPEGLQANGANIKGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAIEVG 171
Query: 148 WAEGRRWADIIKPGCVNTDP---IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+ G P F ++ G D YPGG FDPLG PE +EL+
Sbjct: 172 LMGAVEFYRRNGTGPAGYSPGIGKFDSSVFEGLDSIYPGGP-FDPLGLAD-DPEVFQELK 229
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KEIKNGRLAM++V+ Q TG GP N I H+ DP
Sbjct: 230 VKEIKNGRLAMVSVLAFAIQSYVTGEGPYTNWIKHVQDP 268
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 119/253 (47%), Gaps = 56/253 (22%)
Query: 31 SFLGGKKLK---LRKNGATAGTRSVSVSAAAA------DPNRPLWFP--GSTPPEWLDGS 79
SFLG + +R+ G + G ++ + +A P+RP + P +L G
Sbjct: 11 SFLGTAPRRDELVRRVGNSGGRITMRRTVKSAPQNIWYGPDRPKYLGPFSEQTPSYLTGK 70
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYT 125
PGD+G+D GL E++H RWAMLGA G F PE+L+K G+ W+
Sbjct: 71 FPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILSKNGVNFGEAVWFK 130
Query: 126 AGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
AG L+Y + ++ V+++ +G+ EG R V P+
Sbjct: 131 AGAQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYR---------VGGGPL-- 179
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
G D YPGG FD LG P+ E + KE NGRLAM +++G + Q I TG
Sbjct: 180 ---GEGLDKVYPGGA-FDHLGLAE-DPDTFAEFKVKEFNNGRLAMFSMLGFFVQAIVTGK 234
Query: 231 GPIDNLIAHLADP 243
GPI+N H+ADP
Sbjct: 235 GPIENFFDHVADP 247
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 123/267 (46%), Gaps = 55/267 (20%)
Query: 14 SSPSSQKSRSVAGATKASFLGGKKLK----LRKNGATAGTRSVSVSAAAADPNRPLW--- 66
S+ + SR VA K FLG + LR A A R + P+R +
Sbjct: 3 STIMAATSRVVA--AKTPFLGQGRTANASPLRDVAAAANGRITMSNDLWYGPDRVKYLGP 60
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
F TP +L G PGD+G+D GL E++H RWAMLGA G PE+L
Sbjct: 61 FSAQTP-SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQ 119
Query: 114 K-LGI-LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWAD 156
K L + P W+ AG L+Y + + ++I +G EG R
Sbjct: 120 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRING 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
+ PG G D+ YPGG +FDPLG P EL+ KEIKNGRLAM
Sbjct: 180 L--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL+ HL +P
Sbjct: 225 SMFGFFVQAIVTGKGPLENLLDHLDNP 251
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 102/201 (50%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L+G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 63 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 122
Query: 120 --TPSWYTAGE-------LEYFTD------TTTLFIV--EMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + L ++ +++ +G EG R +
Sbjct: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGL----- 177
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 178 ---DGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 227
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL DP
Sbjct: 228 IQAIVTGKGPLENLLDHLDDP 248
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 127
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + ++I +G EG R +
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGL----- 182
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 183 ---DGVGEGNNL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 232
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL DP
Sbjct: 233 VQAIVTGKGPLENLLDHLDDP 253
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G GD+G+D GL E++H RWAMLGA G
Sbjct: 50 PDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 109
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L+K G+ W+ AG L+Y + + ++ I WA + +
Sbjct: 110 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----SQV 163
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
+ G V + G D YPGG FDPLG P+ EL+ KE+KNGRLAM +
Sbjct: 164 VLMGFVEGYRVGGGPLGEGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFS 221
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL H+ADP
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADP 247
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 46/222 (20%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R W T P +L G LPGD+G+D GL E++H RWAMLGA G
Sbjct: 100 PDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG 159
Query: 106 IFIPELLTKLGIL--NTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
+ PELL G+ WY AG L Y + + + F+ + +G
Sbjct: 160 VVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGA 219
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
E R+ + D + YPGG FDPLG + P+ + EL+ KE+
Sbjct: 220 VEAYRYGGGVGDFGRELDTL------------YPGGP-FDPLGLAN-DPDALAELKVKEL 265
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGRLAM+A++G + Q + T GP++NL HLADP +F+
Sbjct: 266 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 307
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 103/222 (46%), Gaps = 51/222 (22%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R W T P +L G LPGD+G+D GL E++H RWAML
Sbjct: 335 PDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML---- 390
Query: 106 IFIPELLTKLGIL--NTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
PELL G+ WY AG L Y + + + F+ + +G
Sbjct: 391 -VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGA 449
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
E R+ + D + YPGG FDPLG + P+ + EL+ KE+
Sbjct: 450 VEAYRYGGGVGDFGRELDTL------------YPGGP-FDPLGLAN-DPDALAELKVKEL 495
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGRLAM+A++G + Q + T GP++NL HLADP +F+
Sbjct: 496 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 537
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D YPGG FDPLG + P+ + EL+ KE+KNGRLAM+A++G + Q + T GP++NL
Sbjct: 2 DTLYPGGP-FDPLGLAN-DPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLT 59
Query: 238 AHLADPGHATVFA 250
HLADP +F+
Sbjct: 60 FHLADPSSNNIFS 72
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 115/246 (46%), Gaps = 48/246 (19%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGF 86
++ + G ++ +RK TA T+ V D + L P +L G PGD+G+
Sbjct: 22 SSSSEVQGDARVSMRK---TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGW 78
Query: 87 DPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE---- 128
D GL E++H RWAMLGA G PELL + G+ W+ G
Sbjct: 79 DTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFS 138
Query: 129 ---LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177
L+Y + + ++ +++ +G EG R A P DP+
Sbjct: 139 EGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPL--------- 187
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
YPGG FDPLG + E EL+ KEIKNGRLAM ++ G + Q I TG GP++NL
Sbjct: 188 ---YPGGS-FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
Query: 238 AHLADP 243
HLADP
Sbjct: 243 DHLADP 248
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 109
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L+K G+ W+ AG L+Y + + ++ I WA + +
Sbjct: 110 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----SQV 163
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
+ G V + G D YPGG FDPLG P+ EL+ KE+KN RLAM +
Sbjct: 164 VLMGFVEGYRVGGGPLGEGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNSRLAMFS 221
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL H+ADP
Sbjct: 222 MFGFFVQAIVTGKGPIENLADHVADP 247
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 101/202 (50%), Gaps = 47/202 (23%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L+G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVD 123
Query: 120 --TPSWYTAGELEYFTDTTTLFI----------------VEMIFIGWAEGRRWADIIKPG 161
P W+ AG + F+D ++ +++ +G EG R + PG
Sbjct: 124 FKEPVWFKAGS-QIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG 180
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G
Sbjct: 181 VGE-----------GNDL-YPGGQYFDPLGLAD-DPTTFAELKVKEIKNGRLAMFSMFGF 227
Query: 222 WFQHIYTGTGPIDNLIAHLADP 243
+ Q I TG GP++NL+ HL +P
Sbjct: 228 FVQAIVTGKGPLENLLDHLDNP 249
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 111/259 (42%), Gaps = 91/259 (35%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHCR 97
+RPLWFPG+ PEWLDGSL GD+GFDP GL +I+ R
Sbjct: 49 DRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTR 108
Query: 98 --------------------------------WAMLGAAGIFIPELLTKLGILNTPSWYT 125
WAML G E LT + +W
Sbjct: 109 FESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQD 162
Query: 126 AGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
AG++E + TTL +E++ IG+ E +R A++ P +L
Sbjct: 163 AGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELD-----------PEKRL 211
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG +FDPLG PEK L+ EIK+ RLAM+A +G Q TG GP++
Sbjct: 212 ------YPGGKFFDPLGLAE-DPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLN 264
Query: 235 NLIAHLADPGHATVFAAFT 253
N HL+DP H T+ F+
Sbjct: 265 NWATHLSDPLHTTIIDNFS 283
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 113/271 (41%), Gaps = 91/271 (33%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------ 91
+S +A +RPLW+PG+ PEWLDGSL GD+GFDP GL
Sbjct: 38 KSAPKRSAKPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNL 97
Query: 92 ------EIVHCR--------------------------------WAMLGAAGIFIPELLT 113
+I+ R WAML G E LT
Sbjct: 98 AKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLT 157
Query: 114 KLGILNTPSWYTAGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGC 162
+ +W AG++E + TTL +E++ IG+ E +R
Sbjct: 158 GV------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------- 202
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
N++L YPGG +FDPLG PEK L+ EIK+ RLAM+A +G
Sbjct: 203 --------NSELDPEKRLYPGGKFFDPLGLAE-DPEKKATLQLAEIKHARLAMVAFLGFA 253
Query: 223 FQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
Q TG GP++N HL+DP H T+ F+
Sbjct: 254 VQAAVTGKGPLNNWATHLSDPLHTTIIDNFS 284
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 103/206 (50%), Gaps = 31/206 (15%)
Query: 61 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P S P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L + G+ W+ AG L+Y + + ++ I WA +
Sbjct: 112 CTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WATQVVLMGL 170
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
I+ V P+ G D YPGG FDPLG P+ EL+ KE+KNGRLAM +
Sbjct: 171 IEGYRVGGGPLG-----EGLDPLYPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFS 223
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI NL H+ADP
Sbjct: 224 MFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 99/201 (49%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L+G PGD+G+D GL E++H RWAMLGA G PE+L K L +
Sbjct: 63 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 122
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + G
Sbjct: 123 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG- 181
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 182 ------------EGNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 227
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL DP
Sbjct: 228 VQAIVTGKGPLENLLDHLDDP 248
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 61 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P S P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PE+L K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 112 CTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D YPGG FDPLG P+ EL+ KE+K
Sbjct: 172 EGYR---------VGGGPL-----GEGLDPLYPGGA-FDPLGLAD-DPDAFAELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I TG GP+ NL H+ADP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADP 249
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 71 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 130
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + ++I +G EG R +
Sbjct: 131 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGL----- 185
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 186 ---DGVGEGNNL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 235
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL DP
Sbjct: 236 VQAIVTGKGPLENLLDHLDDP 256
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 112/261 (42%), Gaps = 91/261 (34%)
Query: 60 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVH 95
D +RPLW+PG+ PE+LDGSL GD+GFDP GL +I+
Sbjct: 51 DTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIG 110
Query: 96 CR--------------------------------WAMLGAAGIFIPELLTKLGILNTPSW 123
R WAML G E LT + +W
Sbjct: 111 TRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV------TW 164
Query: 124 YTAGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
AG++E + TTL +E++ IG+ E +R A++ P
Sbjct: 165 QDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELD-----------PEK 213
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
+L YPGG +FDPLG S PEK L+ EIK+ RLAM+ +G Q TG GP
Sbjct: 214 RL------YPGGSYFDPLGLAS-DPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGP 266
Query: 233 IDNLIAHLADPGHATVFAAFT 253
++N HL+DP H T+ F+
Sbjct: 267 LNNWATHLSDPLHTTIIDTFS 287
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 110/259 (42%), Gaps = 91/259 (35%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHCR 97
+RPLWFPG+ P++LDGSL GD+GFDP GL +I+ R
Sbjct: 50 DRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTR 109
Query: 98 --------------------------------WAMLGAAGIFIPELLTKLGILNTPSWYT 125
WAML G E LT + +W
Sbjct: 110 FEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQD 163
Query: 126 AGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
AG++E + TTL +E++ IG+ E +R N +L
Sbjct: 164 AGKVELVDGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQR-----------------NAEL 206
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG +FDPLG S PEK + L+ EIK+ RLAM+ +G Q TG GP++
Sbjct: 207 DSEKRLYPGGSYFDPLGLAS-DPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLN 265
Query: 235 NLIAHLADPGHATVFAAFT 253
N HL+DP H T+F F+
Sbjct: 266 NWATHLSDPLHTTIFDTFS 284
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 120/255 (47%), Gaps = 59/255 (23%)
Query: 29 KASFLGGKKLK-----LRKNGATAGTRSV---SVSAAAAD----PNRPLWFP--GSTPPE 74
+++F G LK +RK G+ G R +V +A P+RP + P
Sbjct: 8 QSAFAGQTALKQSNELVRKVGSFGGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 67
Query: 75 WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNT 120
+L G PGD+G+D GL E++HCRWAMLGA G PE+L+K G+
Sbjct: 68 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGE 127
Query: 121 PSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
W+ AG L+Y + ++ V+++ +G+ EG R P
Sbjct: 128 AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGEGL 185
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DPI YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G + Q
Sbjct: 186 DPI------------YPGGA-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQA 231
Query: 226 IYTGTGPIDNLIAHL 240
I TG GPI+N + L
Sbjct: 232 IVTGKGPIENSLITL 246
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 46/222 (20%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R W T P +L G LPGD+G+D GL E++H RWAMLGA G
Sbjct: 48 PDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG 107
Query: 106 IFIPELLTKLGIL--NTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
+ PELL G+ WY AG L Y + + + F+ + +G
Sbjct: 108 VVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGA 167
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
E R+ + D + YPGG FDPLG + P+ + EL+ KE+
Sbjct: 168 VEAYRYGGGVGDFGRELDTL------------YPGGP-FDPLGLAN-DPDALAELKVKEL 213
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGRLAM+A++G + Q + T GP++NL HLADP +F+
Sbjct: 214 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 255
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 17/84 (20%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R W T P +L G LPGD+G+D GL E++H RWAMLGA G
Sbjct: 283 PDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG 342
Query: 106 IFIPELLTKLGIL--NTPSWYTAG 127
+ PELL G+ WY AG
Sbjct: 343 VVTPELLAGNGVPFGEGAVWYKAG 366
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 106/215 (49%), Gaps = 48/215 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K L +
Sbjct: 67 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + ++I +G EG R +
Sbjct: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGL----- 181
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 182 ---DGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
Query: 223 FQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
Q I TG GP++NL+ HL +P +A V+A F+P
Sbjct: 232 VQAIVTGKGPLENLLDHLDNPVANNAWVYATKFSP 266
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 99/201 (49%), Gaps = 41/201 (20%)
Query: 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
A +R +W G+ PE LDGSL GDFGFDPLGL E + RWAM+ AG
Sbjct: 5 ASSDRQMWLVGAAAPEHLDGSLAGDFGFDPLGLGSEPDRLKWYVEAEKTNGRWAMMAVAG 64
Query: 106 IFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
I EL LG+ TP W+ AG +Y L +E I +G+ E +R+
Sbjct: 65 ILGQEL---LGV--TPKWFEAGAKDYGIPFFPLLAMEAIILGFLETKRYQGF-------- 111
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
K TG+ G+ FDP S +++ KEIKNGRLAM+A +G Q
Sbjct: 112 -------KTTGSS-GFLNSFPFDPANMNS------PDMQLKEIKNGRLAMIAFVGFSVQA 157
Query: 226 IYTGTGPIDNLIAHLADP-GH 245
+ T GPI+ L H+ DP GH
Sbjct: 158 LVTREGPIEGLFNHIGDPFGH 178
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 46/222 (20%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R W T P +L G LPGD+G+D GL E++H RWAMLGA G
Sbjct: 394 PDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALG 453
Query: 106 IFIPELLTKLGIL--NTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGW 148
+ PELL G+ WY AG L Y + + + F+ + +G
Sbjct: 454 VVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGA 513
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
E R+ + D + YPGG FDPLG + P+ + EL+ KE+
Sbjct: 514 VEAYRYGGGVGDFGRELDTL------------YPGGP-FDPLGLAN-DPDALAELKVKEL 559
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
KNGRLAM+A++G + Q + T GP++NL HLADP +F+
Sbjct: 560 KNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 601
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 100/217 (46%), Gaps = 48/217 (22%)
Query: 61 PNRPLWF---PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNRP W G PE+L G GD+GFD GL E+ + RWAMLG
Sbjct: 158 PNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVL 217
Query: 105 GIFIPELLTKL-GI-LNTPSWY-------TAGELEYFTDTTTLFIVEMI--------FIG 147
G PE+L+ + G+ P W+ G ++Y + + ++ F
Sbjct: 218 GCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTLVLELVFFF 277
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R A G D YPGG+ FDPLG S P E + KE
Sbjct: 278 AAETWREAGEGPLGKAQ-------------DKSYPGGV-FDPLGL-SKDPAAFAEAKVKE 322
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
+KNGRLAMLA++G + Q TG P++NL AHLA+PG
Sbjct: 323 VKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPG 359
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237
D YPGG FDPLG + P+ + EL+ KE+KNGRLAM+A++G + Q + T GP++NL
Sbjct: 70 DTLYPGGP-FDPLGLAN-DPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLT 127
Query: 238 AHLADPGHATVFA 250
HLADP +F+
Sbjct: 128 FHLADPSANNIFS 140
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 98/200 (49%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G GD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 36 PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKF 95
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 96 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG--GPLGE 153
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 154 VVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 199
Query: 224 QHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 200 QAIVTGKGPLENLADHLADP 219
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 117/247 (47%), Gaps = 50/247 (20%)
Query: 21 SRSVAGATKASFLGGKKLKLRKNGATAGT-------RSVSVSAAAADPNRPLWFPGST-- 71
S +V +SFL G K G GT +++ V AAAA P + W P
Sbjct: 4 SGAVLSGLGSSFLTGGKRSSTALGNGVGTGAQRVGRKTLIVVAAAAQPKKS-WIPAVKGG 62
Query: 72 ----PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PEWLDGSLPGD+GFDPLGL E++H RWAM GIF+ + +
Sbjct: 63 GNFLDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 122
Query: 115 LGILNTPSWYTAG---ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
+ W+ AG E +L +++ +GW E +RW D P + + P
Sbjct: 123 V------PWFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPW 176
Query: 172 NKLTGT------DVGYPGGLWFDPLGW------GSGSP--EKVKELRTKEIKNGRLAMLA 217
++ D GYPGG +FDPLG G P EK++ L+ EIK+ RLAMLA
Sbjct: 177 SRTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDVEKLERLKLAEIKHSRLAMLA 236
Query: 218 VMGAWFQ 224
++ +F+
Sbjct: 237 MLIFYFE 243
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 101/219 (46%), Gaps = 38/219 (17%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P R L+ PG PE+L+G L GD+G+DPLGL E++H RWAML
Sbjct: 49 PERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAMLA 108
Query: 103 AAGIFIPELLTKLGI-LNTPSWY-------TAGELEYFT----------DTTTLFIVEMI 144
AAGI IPE L G + +W+ G L YF + ++E++
Sbjct: 109 AAGILIPEGLQANGADIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTLIEIV 168
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+G E R G F ++ G D YPGG FDPL PE EL+
Sbjct: 169 LLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDGLDQLYPGG-PFDPLNLAD-DPEVFAELQ 226
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KE KNGRLAM+ V+ Q TG GP N H++DP
Sbjct: 227 VKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDP 265
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 103/214 (48%), Gaps = 47/214 (21%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+R L+ PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTK--------LGILNTPSWYTAGELEYFTDTT--------TLFIVEMIFIGWA 149
PELL + +G ++ G L+Y + + ++ +++ +G
Sbjct: 112 CVFPELLARNGVKFGEAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R A P DP+ YPGG FDPLG PE EL+ KE+K
Sbjct: 172 EGYRIAG--GPLGEVVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
GRLAM ++ G + Q I TG GP++NL H+ADP
Sbjct: 216 KGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 249
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 112/215 (52%), Gaps = 50/215 (23%)
Query: 54 VSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLEIV-------------HCR 97
+AA + P RPLW + G+TP +LDGSL GD+G+D GL H R
Sbjct: 16 TTAATSAPERPLWLGPYTGATP-SYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHAR 74
Query: 98 WAMLGAAGIFIPELL-TKLGI-LNTPSWYTAGE-------LEYFTD------TTTLFIV- 141
WAMLGA G +PELL T G L P W+ AG L+Y + + L I+
Sbjct: 75 WAMLGALGSLLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQSILAILG 134
Query: 142 -EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKV 200
+++ +G +EG R A P D ++P G FDPLG+ S PE +
Sbjct: 135 FQVLLMGLSEGYRLAG--GPLGEVGDALYP-------------GASFDPLGF-SEDPESL 178
Query: 201 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235
EL+TKEIKNGRLAMLA++G + Q + TG GP+ N
Sbjct: 179 LELQTKEIKNGRLAMLAMLGMYTQALVTGKGPVSN 213
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 113/258 (43%), Gaps = 91/258 (35%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIV--- 94
+RPLWFPG+ PE+LDG+L GD+GFDP GL EI+
Sbjct: 50 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTR 109
Query: 95 ------------------------HC-----RWAMLGAAGIFIPELLTKLGILNTPSWYT 125
C RWAML G E LT + +W
Sbjct: 110 FEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV------TWQD 163
Query: 126 AGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
AG++E + TTL +E++ IG+ E +R A++ P +L
Sbjct: 164 AGKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQRNAELD-----------PERRL 212
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG +FDPLG + PEK + L+ EIK+ RLAM+A +G Q TG G ++
Sbjct: 213 ------YPGGSYFDPLGL-AADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGRLN 265
Query: 235 NLIAHLADPGHATVFAAF 252
N HL+DP H T+F F
Sbjct: 266 NWATHLSDPLHTTIFDTF 283
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 115/249 (46%), Gaps = 47/249 (18%)
Query: 10 VAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTR-SVSVSAAAADPNRPLWFP 68
+AA+++ +S ++ S A KA+F G + A R S+ V AA NR LW
Sbjct: 1 MAALTT-TSVRAVSAVSARKANFAGSRASFAAPAKAPVSARASLKVQAA----NRELWLK 55
Query: 69 GST-PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
ST P LDG+LPGDFGFDPLGL E+++ RWAM+ AGI E+L
Sbjct: 56 DSTVAPAHLDGTLPGDFGFDPLGLGADPERLKYYQEAELMNARWAMMAVAGICTTEILGI 115
Query: 115 LGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
G WY AG EY L V+ +G E RR + G + FP
Sbjct: 116 GG-----PWYEAGAAEYDLPINALLAVQFPVMGILELRRIRGWLATGKSGVNETFP---- 166
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
+DP+G ++ KE+KNGRLAM+A +G Q I TGP+
Sbjct: 167 ------------WDPMGMNG------DQMALKEVKNGRLAMIAFVGIVVQAIVYRTGPVA 208
Query: 235 NLIAHLADP 243
L H+ DP
Sbjct: 209 ALKDHITDP 217
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P WL LPG++GFDPL L E++H RWAMLG AG ELL
Sbjct: 3 WLPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELL 62
Query: 113 TKLGILNTPSW-YTAGELEYFT-----DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
+ P W G+ +F D TL E + + AEG+R
Sbjct: 63 GYGNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQRG------------ 110
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
V YPGG FDPLG+ + K EL+ KE+KNGRLAM+A +G QH
Sbjct: 111 --------DAGGVVYPGGA-FDPLGFAKDA-SKSGELKLKEVKNGRLAMVAFLGFVAQHA 160
Query: 227 YTGTGPIDNLIAHLADP 243
TG GPI L HL++P
Sbjct: 161 ATGKGPIAALGEHLSNP 177
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 122/300 (40%), Gaps = 100/300 (33%)
Query: 30 ASFLGGKKLKLRKNGATAGTR---------SVSVSAAAADPNRPLWFPGSTPPEWLDGSL 80
+SF+G + +++ N R S ++ +RPLWFPG+ PEWLDGSL
Sbjct: 70 SSFIGTRLREVQSNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGSL 129
Query: 81 PGD----------------FGFDPL----------------------------------G 90
GD F D L G
Sbjct: 130 VGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVFG 189
Query: 91 L------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT-------- 136
L E++H RWAML G E LT + +W AG++E +T
Sbjct: 190 LQRFRECELIHGRWAMLATLGALTVEWLTGV------TWQDAGKVELVEGSTYLGQPLPF 243
Query: 137 ---TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
TL +E++ IG+ E +R N +L YPGG +FDPLG
Sbjct: 244 SITTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLA 286
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
S PEK L+ EIK+ RLAM+A +G Q TG GP++N HL+DP H T+ F+
Sbjct: 287 S-DPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 345
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K L +
Sbjct: 66 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 125
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + ++I +G EG R +
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGL----- 180
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 181 ---DGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 230
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 231 VQAIVTGKGPLENLLDHLDNP 251
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 106/230 (46%), Gaps = 52/230 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP + F P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 55 PDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 114
Query: 105 GIFIPELLTKLG--ILNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIG 147
G PELL+K W+ AG L Y + + +++ +G
Sbjct: 115 GCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMG 174
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
AE R N P+ G D +PGG FDPLG P+ EL+ KE
Sbjct: 175 LAEAYR---------ANGGPL-----GEGLDPLHPGGA-FDPLGLAD-DPDTFAELKVKE 218
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
IKNGRLAM ++ G + Q I TG GPI+NL HLA+P FA FTP
Sbjct: 219 IKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFAYATKFTP 268
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K L +
Sbjct: 68 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 127
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R +
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL----- 182
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 183 ---DGVGEGNNL------YPGGQYFDPLGLAD-DPATFAELKVKEIKNGRLAMFSMFGFF 232
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 233 VQAIVTGKGPLENLLDHLDNP 253
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 47 AGTRSVSVSAAAAD---PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL------- 91
A + V AA A PNR L+ PG + P +LDG+L GD+GFDPLGL
Sbjct: 79 AARQPVDQKAAIAKWYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGADGKVK 138
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLF-----IV 141
EI+H RWAML G+ IPE L G + T + + E D+ F +
Sbjct: 139 DYRVAEILHARWAMLAVPGVVIPEALNIPGGVWTETGKVFLDGETGRDSILEFWPIYAAI 198
Query: 142 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG--LWFDPLGWGSGSPEK 199
+++ +G AE R + G V F + G D PGG +FD + +P+
Sbjct: 199 QVVLMGGAEKFRQDGVGPAGFVPFKGKFEESAFNGLDPVNPGGPLDFFDV----AKNPQD 254
Query: 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ L+ KEIKNGRLAM+A++G + Q TG GP N H+A+P
Sbjct: 255 LQILKVKEIKNGRLAMIAMLGVFVQGAVTGEGPAANWGKHVANP 298
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P S P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L K G+ W+ AG L+Y + + ++ I WA
Sbjct: 112 CTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WATRVVLMGF 170
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
++ V P+ G D YPGG FDPLG P+ EL+ KE+KNGRLAM +
Sbjct: 171 VEGYRVGGGPL-----GEGLDPLYPGGA-FDPLGLAD-DPDAFAELKVKELKNGRLAMFS 223
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GP+ NL H+ADP
Sbjct: 224 MFGFFVQAIVTGKGPVQNLYDHVADP 249
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 121/267 (45%), Gaps = 55/267 (20%)
Query: 14 SSPSSQKSRSVAGATKASFLGGKKLK----LRKNGATAGTRSVSVSAAAADPNRPLW--- 66
S+ + SR VA K FLG + LR A A R + P+R +
Sbjct: 3 STIMAATSRVVA--AKTPFLGQGRAANASPLRDVAAAANGRITMSNDLWYGPDRLKYLGP 60
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
F TP +L G PGD+G+D GL E++H RWAMLGA G PE+L
Sbjct: 61 FSAQTP-SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQ 119
Query: 114 K--LGILNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWAD 156
K P W+ AG L+Y + + ++I +G EG R
Sbjct: 120 KWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRING 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
+ PG G D+ YPGG +FDPLG P EL+ KEIKNGRLAM
Sbjct: 180 L--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL+ H+ +P
Sbjct: 225 SMFGFFVQAIVTGKGPLENLLDHIDNP 251
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 113/260 (43%), Gaps = 91/260 (35%)
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHC 96
P+RPLW+PG+ PE+LDGSL GD+GFDP GL +I+
Sbjct: 47 PDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGT 106
Query: 97 R--------------------------------WAMLGAAGIFIPELLTKLGILNTPSWY 124
R WAML G E LT + +W
Sbjct: 107 RTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQ 160
Query: 125 TAGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
AG++E + TTL ++E++ IG+ E +R A++ P +
Sbjct: 161 DAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRNAELD-----------PEKR 209
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
L YPGG +FDPLG + PEK L+ EIK+ RLAM+A +G Q TG GP+
Sbjct: 210 L------YPGGNFFDPLGL-AADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPL 262
Query: 234 DNLIAHLADPGHATVFAAFT 253
+N HL+DP H T+ +
Sbjct: 263 NNWATHLSDPLHTTIIDTLS 282
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 108/215 (50%), Gaps = 48/215 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L+G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 126
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 184
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 185 GE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 231
Query: 223 FQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
Q I TG GP++NL+ HL +P +A V+A F+P
Sbjct: 232 VQAIVTGKGPLENLLDHLDNPVANNAWVYATKFSP 266
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 104/211 (49%), Gaps = 49/211 (23%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R L+ F G PP +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 57 PDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGAL 115
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGW 148
G PELL + G+ W+ AG L+Y + + ++ ++I +G
Sbjct: 116 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGA 175
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
EG R A P TDPI YPGG FDPLG P+ EL+ KE+
Sbjct: 176 VEGYRIAG--GPLGEVTDPI------------YPGGS-FDPLGLAD-DPDAFAELKVKEL 219
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
KNGRLAM ++ G + Q I TG GPI+NL H
Sbjct: 220 KNGRLAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 122/300 (40%), Gaps = 100/300 (33%)
Query: 30 ASFLGGKKLKLRKNGATAGTR---------SVSVSAAAADPNRPLWFPGSTPPEWLDGSL 80
+SF+G + +++ N R S ++ +RPLWFPG+ PEWLDGSL
Sbjct: 12 SSFIGTRLREVQSNSGRIQARFGFGKKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGSL 71
Query: 81 PGD----------------FGFDPL----------------------------------G 90
GD F D L G
Sbjct: 72 VGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQPYSEVFG 131
Query: 91 L------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT-------- 136
L E++H RWAML G E LT + +W AG++E +T
Sbjct: 132 LQRFRECELIHGRWAMLATLGALTVEWLTGV------TWQDAGKVELVEGSTYLGQPLPF 185
Query: 137 ---TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
TL +E++ IG+ E +R N +L YPGG +FDPLG
Sbjct: 186 SITTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLA 228
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
S PEK L+ EIK+ RLAM+A +G Q TG GP++N HL+DP H T+ F+
Sbjct: 229 S-DPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 287
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 113/260 (43%), Gaps = 91/260 (35%)
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHC 96
P+RPLW+PG+ PE+LDGSL GD+GFDP GL +I+
Sbjct: 47 PDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGT 106
Query: 97 R--------------------------------WAMLGAAGIFIPELLTKLGILNTPSWY 124
R WAML G E LT + +W
Sbjct: 107 RTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQ 160
Query: 125 TAGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
AG++E + TTL ++E++ IG+ E +R A++ P +
Sbjct: 161 DAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRNAELD-----------PEKR 209
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
L YPGG +FDPLG + PEK L+ EIK+ RLAM+A +G Q TG GP+
Sbjct: 210 L------YPGGNFFDPLGL-AADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPL 262
Query: 234 DNLIAHLADPGHATVFAAFT 253
+N HL+DP H T+ +
Sbjct: 263 NNWATHLSDPLHTTIIDTLS 282
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 122/267 (45%), Gaps = 55/267 (20%)
Query: 14 SSPSSQKSRSVAGATKASFLGGKKLK----LRKNGATAGTRSVSVSAAAADPNRPLW--- 66
S+ + SR VA K FLG + LR A A R + P+R +
Sbjct: 3 STIMAATSRVVA--AKTPFLGQGRTANASPLRDVAAAANGRITMSNDLWYGPDRVKYLGP 60
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
F TP +L G GD+G+D GL E++H RWAMLGA G PE+L
Sbjct: 61 FSAQTP-SYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 119
Query: 114 KLGILN--TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWAD 156
K ++ P W+ AG L+Y + + ++I +G EG R
Sbjct: 120 KWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRING 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
+ PG G D+ YPGG +FDPLG P ELR KEIKNGRLAM
Sbjct: 180 L--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELRVKEIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ G + Q I TG GP++NL+ HL +P
Sbjct: 225 SMFGFFVQAIVTGKGPLENLLDHLDNP 251
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 129/305 (42%), Gaps = 106/305 (34%)
Query: 13 ISSPSSQKSRSVAGATKASF-LGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST 71
++ P+ Q R VA + F LG KK +K S A +RPLWFPG+
Sbjct: 17 LADPAPQNGRIVA---RFGFGLGRKKAPAKK-----------ASRAPPTTDRPLWFPGAQ 62
Query: 72 PPEWLDGSLPGDFG--------------FDPLGL-------------------------- 91
PE+LDG+L GD+G +DP L
Sbjct: 63 APEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTRFEDADIKSTP 122
Query: 92 ----------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT 135
E++H RWAML G E LT + +W AG++E +
Sbjct: 123 LQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV------TWQDAGKVELVDGS 176
Query: 136 -----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
TTL +E++ IG+ E +R A++ P +L YPGG
Sbjct: 177 SYLGQPLPFTITTLIWIEVLVIGYIEFQRNAELD-----------PEKRL------YPGG 219
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 244
+FDPLG + PEK + L+ EIK+ RLAM+ +G Q TG GP++N HL+DP
Sbjct: 220 SYFDPLGLAA-DPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 278
Query: 245 HATVF 249
H T+F
Sbjct: 279 HTTIF 283
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 103/222 (46%), Gaps = 43/222 (19%)
Query: 61 PNRPLWFPGST-PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
P+RP PG E L G++ GD GFDPLGL E++H RWAMLG G
Sbjct: 180 PSRPR-LPGPLGSAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGC 238
Query: 107 FIPELLTKLGI-LNTPSWYTAGELEYFTDTTT------------------LFIVEMIFIG 147
+PELL G+ L P W+ G + +D T + + + +G
Sbjct: 239 LVPELLALRGVDLGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMG 298
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
E R+ V + P D YPGG FDPL + + + + E KE
Sbjct: 299 GPEYARY--------VGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADA-DGFVEQAVKE 349
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
+KNGRLAMLA++G + Q T GP+ N++ +ADP H +F
Sbjct: 350 VKNGRLAMLAMLGFFVQAAVTRVGPVQNVLDFVADPAHNNIF 391
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 128/277 (46%), Gaps = 39/277 (14%)
Query: 11 AAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNR------P 64
+ I++ ++ +R V+ TK+S + L ++ G +AA A R P
Sbjct: 5 STIANRAALATRVVSQVTKSSNNKRRSLIVKAEGDVPAETEKPAAAAPAKVARNTDNLAP 64
Query: 65 LWFPGSTPPE--WLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAA 104
L+ G + +LDG+LPGD+GFDPLGL E++H RWAMLG A
Sbjct: 65 LYMLGVSDQSLSYLDGTLPGDYGFDPLGLSDPEGAGGFINPGWLAYAEVIHGRWAMLGVA 124
Query: 105 GIFIPELLTKLGILNTPS-WY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
G PE + +T W+ G +++ T LF V + + + E R +
Sbjct: 125 GATAPETMKGFIPDSTAVVWFKNGIIPAQGSYDFWAPPTALFWVMVCMMNFVEINRLTEY 184
Query: 158 IKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
PG + K + GT + YPGG F+P+G G + ++ KEIKNGRLAM
Sbjct: 185 ANPGFRTKQSLAGLEKGMGGTGNPAYPGG-SFNPMGMGK---NDMDAMKVKEIKNGRLAM 240
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252
+A G Q I TG GP+ NL H+ DP + F
Sbjct: 241 MAFFGIMVQAIITGEGPVKNLTDHVTDPFAHNLLTNF 277
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 99/200 (49%), Gaps = 45/200 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++H RWAMLGA G PELL++ G+
Sbjct: 29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 88
Query: 119 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 89 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 146
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 147 VVDPL------------YPGGS-FDPLGLAE-VPEAFAELKVKELKNGRLAMFSMFGFFV 192
Query: 224 QHIYTGTGPIDNLIAHLADP 243
I TG GP++NL HLADP
Sbjct: 193 PAIVTGKGPLENLADHLADP 212
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVD 123
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + G
Sbjct: 124 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVG- 182
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 183 ------------EGNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 228
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 229 VQAIVTGKGPLENLLDHLDNP 249
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 121/252 (48%), Gaps = 52/252 (20%)
Query: 17 SSQKSRSVAGATKASFL-GGKKLKLRKNGATAGTRSVSVS------AAAADPNRPLWFPG 69
++ S +V +SFL GG + + + G V+VS AAA P + W PG
Sbjct: 2 AAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKS-WIPG 60
Query: 70 S------TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPE 110
PEWLDGSLPGDFGFDPLGL E++H RWAM GIF+ +
Sbjct: 61 VRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 111 LLTKLGILNTPSWYTAG----ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
+ + W+ AG + F+ +L ++I +GW E +RW D P + +
Sbjct: 121 AWSGV------PWFEAGADPNAIAPFS-FGSLLGTQLILMGWVESKRWVDFFNPDSQSVE 173
Query: 167 PIFPNNKLTGT------DVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGR 212
P +K + GYPGG +FDPLG+ EK++ L+ EIK+ R
Sbjct: 174 WATPWSKTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHAR 233
Query: 213 LAMLAVMGAWFQ 224
+AMLA++ +F+
Sbjct: 234 IAMLAMLIFYFE 245
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 96/201 (47%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK--LGI 117
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVE 123
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + ++I +G EG R +
Sbjct: 124 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGL----- 178
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 179 ---DGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 228
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ H+ DP
Sbjct: 229 VQAIVTGKGPLENLLDHIDDP 249
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 99/203 (48%), Gaps = 54/203 (26%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P +L+ +LP +GFDPLGL E++H RWAMLGAAG+ E
Sbjct: 31 WLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAMLGAAGVLGVE-- 87
Query: 113 TKLGILNTPSWYTA-------GELEYFT-----DTTTLFIVEMIFIGWAEGRRWADIIKP 160
+L +WY A G YF D TL +E + AE R A
Sbjct: 88 ----VLGYGNWYDAPLPLVQGGSATYFGASIPFDLGTLAAIEFAAMAGAESFRGA----- 138
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
P ++ YPGG FDP G G+ + ELRTKEIKNGRLAM+A +G
Sbjct: 139 -------AEPEKRV------YPGGP-FDPAGMSKGNQD---ELRTKEIKNGRLAMIACLG 181
Query: 221 AWFQHIYTGTGPIDNLIAHLADP 243
QH TG P++ L AHLA+P
Sbjct: 182 FVAQHAATGASPLEALGAHLANP 204
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLG-------------LEIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G++ G LE++H RWAMLGA G
Sbjct: 16 PDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWAMLGALG 75
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 76 CVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----CQV 129
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
+ G V + G D YPGG F+PLG P+ EL+ KE+KNGRLAM +
Sbjct: 130 VLMGFVEGYGVGGGPLGEGLDKVYPGGA-FEPLGLAD-DPDTAAELKVKELKNGRLAMFS 187
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL H+ADP
Sbjct: 188 MFGFFVQAIVTGKGPIENLFDHVADP 213
>gi|157965829|gb|ABW06951.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 556
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 45 ATAGTRSVSVSA-AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------ 91
ATAG + A AAA R LW PG PE L+ +L GD GFDPL L
Sbjct: 155 ATAGKKVRPTPAPAAASTERLLWIPGVKAPEHLNNTLVGDRGFDPLNLGKDPNALERFRV 214
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAE 150
E+ H R AML AG +PELL + +WY A + TT + + G E
Sbjct: 215 SEVFHGRLAMLAFAGALVPELLRGV------AWYDAVKTPDPITLTTFLLALAVATGPIE 268
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
R+ D P + P K+ D+ YPG DP W S +E + KE+KN
Sbjct: 269 LWRY-DGRFPAWEEGEE--PEPKVA--DIAYPGA---DPFEWSS------EEAKLKELKN 314
Query: 211 GRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
GRLAM+AV+G +FQH TG PI+NL+A + D + T
Sbjct: 315 GRLAMIAVLGFYFQHAKTGASPIENLVAFINDGANIT 351
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 45 ATAGTRSVSVSA-AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------ 91
ATAG + A AAA R LW PG PE L+ +L GD GFDPL L
Sbjct: 356 ATAGKKVRPTPAPAAASTERLLWIPGVKAPEHLNNTLVGDRGFDPLNLGKNPNALERFRV 415
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAE 150
E+ H R AML AG +PELL + +WY A + TT + + G E
Sbjct: 416 SEVFHGRLAMLAFAGALVPELLRGV------AWYDAVKTPDPITLTTFLLALAVATGPIE 469
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
R+ D P + P K+ ++ YPG DP W S +E + KE+KN
Sbjct: 470 LWRY-DGRFPAWEEGEE--PEPKVA--NIAYPGA---DPFEWSS------EEAKLKELKN 515
Query: 211 GRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
GRLAM+AV+G +FQH TG PI+NL+A + D + T
Sbjct: 516 GRLAMIAVLGFYFQHAKTGASPIENLVAFINDGANIT 552
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 75/169 (44%), Gaps = 46/169 (27%)
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIV---------- 141
E+ H R AML AG +PELL + +WY A TT +V
Sbjct: 15 EVFHGRLAMLAFAGALVPELLRGV------AWYDAVHTPDPITLTTFLLVLAGATGPIEL 68
Query: 142 ---EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 198
+ F W EG P K+ D+ YPG DP W S
Sbjct: 69 WRYDGRFPAWEEGEE----------------PEPKVA--DIAYPGA---DPFEWSS---- 103
Query: 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
+E + KE+KNGRLAM+AV+G +FQH TG PI+NL+A + D + T
Sbjct: 104 --EEAKLKELKNGRLAMIAVLGFYFQHAKTGASPIENLVAFINDGANIT 150
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 110/261 (42%), Gaps = 91/261 (34%)
Query: 60 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVH 95
D RPLW+PG+ PE+LDGSL GD+GFDP GL +I+
Sbjct: 51 DTVRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIG 110
Query: 96 CR--------------------------------WAMLGAAGIFIPELLTKLGILNTPSW 123
R WAML G E LT + +W
Sbjct: 111 TRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV------TW 164
Query: 124 YTAGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 172
AG++E + TTL +E + IG+ E +R A++ P
Sbjct: 165 QDAGKVELVEGSSYLGQPLPFSITTLIWIEALVIGYIEFQRNAELD-----------PEK 213
Query: 173 KLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
+L YPGG +FDPLG S PEK L+ EIK+ RLAM+ +G Q TG GP
Sbjct: 214 RL------YPGGSYFDPLGLAS-DPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKGP 266
Query: 233 IDNLIAHLADPGHATVFAAFT 253
++N HL+DP H T+ F+
Sbjct: 267 LNNWATHLSDPLHTTIIDTFS 287
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVD 123
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + ++I +G EG R +
Sbjct: 124 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGL----- 178
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 179 ---DGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 228
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 229 VQAIVTGKGPLENLLDHLDNP 249
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVD 123
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + G
Sbjct: 124 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVG- 182
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 183 ------------EGNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 228
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 229 VQAIVTGKGPLENLLDHLDNP 249
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVD 123
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + ++I +G EG R +
Sbjct: 124 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGL----- 178
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 179 ---DGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 228
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 229 VQAIVTGKGPLENLLDHLDNP 249
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 134/302 (44%), Gaps = 93/302 (30%)
Query: 13 ISSPSSQKSRSVAGATKASF-LGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST 71
++ P+ Q R VA + F LGGK A + V+ ++ ++D RPLWFPG+
Sbjct: 17 LADPAPQNGRIVA---RFGFGLGGK--------AKPAPKKVAKTSTSSD--RPLWFPGAV 63
Query: 72 PPEWLDGSLPGDFGFDPLG-----------LEIVHCRWAMLGAAGIFIPE---------- 110
P++LDGSL GD+GFDP G L+ + A A GI
Sbjct: 64 APDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSEVKSTP 123
Query: 111 ------------------------LLTKLGILNTP-----SWYTAGELEYFTDT------ 135
+L LG L+ +W AG++E +
Sbjct: 124 LQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQP 183
Query: 136 -----TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 190
+TL +E++ IG+ E +R A++ P +L YPGG +FDPL
Sbjct: 184 LPFSISTLIWIEVLVIGYIEFQRNAELD-----------PEKRL------YPGGSYFDPL 226
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 250
G + PEK + L+ EIK+ RLAM+A +G Q TG GP++N HL+DP H T+F
Sbjct: 227 GL-AADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFD 285
Query: 251 AF 252
F
Sbjct: 286 TF 287
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 111/253 (43%), Gaps = 79/253 (31%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL----EIVHCRWAML------GAAGIFIPE- 110
+RPLW+PG+ PEWLDGSL GD+GFDP GL E + L AGI I
Sbjct: 53 DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTR 112
Query: 111 ----------------------------------LLTKLGILNTP-----SWYTAGELEY 131
+L LG L+ +W AG++E
Sbjct: 113 TEVADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 172
Query: 132 FTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
+ TTL +E++ IG+ E +R A++ P +L
Sbjct: 173 VEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELD-----------PEKRL------ 215
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG +FDPLG S PEK L+ EIK+ RLAM+ +G Q TG GP++N HL
Sbjct: 216 YPGGSYFDPLGLAS-DPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHL 274
Query: 241 ADPGHATVFAAFT 253
+DP H T+ F+
Sbjct: 275 SDPLHTTIIDTFS 287
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 102/217 (47%), Gaps = 50/217 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL------------EIVHCRWAMLGA 103
P+RP + P + P +++G L GD+G+DPLGL E++H RWAMLG
Sbjct: 61 PDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLGNKGGVEKYRPYEVLHGRWAMLGV 120
Query: 104 AGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
G+ +PE L G N W+ +G + + TL WA I P
Sbjct: 121 VGMLVPEGLYANGNTNIKGAVWWDSGAV-LLDPSATL--------------TWAGIPNPV 165
Query: 162 CVNTDPIF--------PNNKL-------TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
+ IF N + TG D YPGG +FDPLG S P K EL+ K
Sbjct: 166 PLALAVIFEVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDPLGLAS-DPSKADELKVK 224
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
EIKNGRLAM+A +G Q+ T GP N HLADP
Sbjct: 225 EIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADP 261
>gi|312281533|dbj|BAJ33632.1| unnamed protein product [Thellungiella halophila]
Length = 258
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 107/212 (50%), Gaps = 45/212 (21%)
Query: 50 RSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGL------------ 91
+++ V+AAAA P + W P PEWLDGSLPGDFGFDPLGL
Sbjct: 42 KTLIVAAAAAQPKKS-WIPAVKGGGNLLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYRE 100
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG----ELEYFTDTTTLFIVEMIFI 146
E++H RWAM GIF+ + + + W+ AG + F+ +L +++ +
Sbjct: 101 AELIHGRWAMAAVLGIFVGQAWSGV------PWFEAGADPRAIAPFS-FGSLLGTQLLLM 153
Query: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPLGWGSGS---- 196
GW E +RW D P + + P ++ D GYPGG +FDPLG +
Sbjct: 154 GWVESKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAGKTRDGV 213
Query: 197 ----PEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
EK++ L+ EIK+ RLAM+A++ +F+
Sbjct: 214 YEPDREKLERLKLAEIKHSRLAMVAMLIFYFE 245
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G GD+G+D GL E++H RWAMLGA G
Sbjct: 50 PDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 109
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L+K G+ W+ AG L+Y + + ++ I WA + +
Sbjct: 110 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----SQV 163
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
+ G V + G D YPGG FDPLG P+ EL+ KE+KNG LAM +
Sbjct: 164 VLMGFVEGYRVGGGPLGEGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGSLAMFS 221
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GPI+NL H+ADP
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADP 247
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 99/201 (49%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 121
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 122 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 179
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 180 GE-----------GNDL-YPGGQYFDPLGLAD-DPATFAELKVKEIKNGRLAMFSMFGFF 226
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 227 VQAIVTGKGPLENLLDHLDNP 247
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 99/201 (49%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 121
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 122 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 179
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 180 GE-----------GNDL-YPGGQYFDPLGLAD-DPTTFAELKVKEIKNGRLAMFSMFGFF 226
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 227 VQAIVTGKGPLENLLDHLDNP 247
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 53/236 (22%)
Query: 29 KASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDP 88
+AS G++L + T GT VS+ R W PGS PP +LDGS+P D+GFDP
Sbjct: 13 RASLFAGRRLATQT---TNGTSKVSM--------RATWMPGSAPPSYLDGSMPCDYGFDP 61
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT 135
LGL E++H RWAMLG +G E++T + + P + Y +T
Sbjct: 62 LGLGKEPDNLARFQEAELIHARWAMLGVSGAAGAEIITGINWVEAP---VQSQQTYLGNT 118
Query: 136 T-----TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 190
+ +E+ + + E +R ++ + + YPGG FDP
Sbjct: 119 IPFPLPAIAAIEVFVMAYVESKRGSETDR-----------------SKRMYPGGA-FDPA 160
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ-HIYTGTGPIDNLIAHLADPGH 245
G+ G+ ++L+ KE+ NGR+AMLA G + GP+ L HLADP H
Sbjct: 161 GFSKGA--DFEKLKRKELANGRVAMLAFAGIIGEAQANNLEGPVAALARHLADPWH 214
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 101/197 (51%), Gaps = 37/197 (18%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKVD 122
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFIVEMI-FIGWAEGRRWADIIKPGCVNTDPIF 169
P W+ AG L+Y + + ++ +G+ ++ G V + F
Sbjct: 123 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGF-------QVVLMGLVES---F 172
Query: 170 PNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
N L G G YPGG +FDPLG P + EL+ KEIKNGRLAM ++ G + Q I
Sbjct: 173 RINGLPGVGEGNDLYPGGQYFDPLGLAD-DPVTLAELKVKEIKNGRLAMFSMFGFFVQAI 231
Query: 227 YTGTGPIDNLIAHLADP 243
TG GP++NL+ HL +P
Sbjct: 232 VTGKGPLENLLDHLDNP 248
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 95/194 (48%), Gaps = 29/194 (14%)
Query: 71 TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117
+PP +L G PGD+G+D GL E++HCRWA+ G PELL + G+
Sbjct: 63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGV 122
Query: 118 -LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
W+ AG + F++ +L + I WA ++ G V +
Sbjct: 123 KFGEGVWFKAGS-QIFSEGGLSHPGNPSLVHAQSILAIWA-----CQVVLMGAVEGYHVA 176
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
D Y GG FDPLG G PE+ EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 177 GGRLGEVVDPLYLGGS-FDPLGLGD-DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 234
Query: 230 TGPIDNLIAHLADP 243
GPI+NL HL DP
Sbjct: 235 KGPIENLADHLTDP 248
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 114/268 (42%), Gaps = 91/268 (33%)
Query: 48 GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---------------- 91
G ++ S + P+RPLW+PG+ PE+LDGSL GD+GFDP GL
Sbjct: 36 GKKAPKKSIKPSTPDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95
Query: 92 --------EIVHCR--------------------------------WAMLGAAGIFIPEL 111
+I+ R WAML G E
Sbjct: 96 NLAKNLAGDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEW 155
Query: 112 LTKLGILNTPSWYTAGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKP 160
LT + +W AG++E + T L +E + IG+ E +R A++
Sbjct: 156 LTGV------TWQDAGKVELVEGSSYLGQPLPFSITALIWIEAVIIGYIEFQRNAELD-- 207
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
P +L YPGG +FDPLG S PEK L+ EIK+ RLAM+A +G
Sbjct: 208 ---------PEKRL------YPGGQFFDPLGLAS-DPEKKATLQLAEIKHARLAMVAFLG 251
Query: 221 AWFQHIYTGTGPIDNLIAHLADPGHATV 248
Q TG GP++N HL+DP H T+
Sbjct: 252 FAVQAWVTGKGPLNNWATHLSDPLHTTI 279
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 104/214 (48%), Gaps = 47/214 (21%)
Query: 61 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P S P +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWA 149
PE+L K G+ W+ AG L+Y + ++ +++ +G+
Sbjct: 112 CTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV 171
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R V P+ G D YPGG FDPLG P+ EL+ KE+K
Sbjct: 172 EGYR---------VGGGPL-----GEGLDPLYPGGA-FDPLGLAD-DPDAFAELKVKELK 215
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
NGRLAM ++ G + Q I T GP+ NL H+ADP
Sbjct: 216 NGRLAMFSMFGFFVQAIVTDKGPVQNLYDHVADP 249
>gi|296090224|emb|CBI40043.3| unnamed protein product [Vitis vinifera]
Length = 209
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 94/206 (45%), Gaps = 41/206 (19%)
Query: 49 TRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLEIVHCRWAMLGAAGIFI 108
R+ S +RPLWF +LDGSLPGD+GFDPLGL G FI
Sbjct: 39 VRAASTPPVKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGLSDPE-------GTGGFI 91
Query: 109 PELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
P W GE ++ F WA PG +
Sbjct: 92 -----------EPRWLAYGE-----------VINGRFQDWAN---------PGSMGKQYF 120
Query: 169 FPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
K G D YPGG F+PLG+G + +K+L+ KE+KNGRLAMLA++G + Q
Sbjct: 121 LGLEKYLGGSGDPAYPGGPLFNPLGFGKDE-KSLKDLKLKEVKNGRLAMLAILGYFAQGP 179
Query: 227 YTGTGPIDNLIAHLADPGHATVFAAF 252
TG GP+ NL+ HLADP + + +
Sbjct: 180 VTGVGPLQNLLDHLADPVNNNIITSL 205
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 100/206 (48%), Gaps = 31/206 (15%)
Query: 61 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P+RP + P +L G PGD+G+D GL E++HCRWAMLGA G
Sbjct: 52 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 111
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
PE+L+K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 112 CVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----TQV 165
Query: 158 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
+ G V I G D YPGG FDPLG P+ EL+ KEIKNGRLAM +
Sbjct: 166 VLMGFVEGYRIGGGPLGEGLDPLYPGGA-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFS 223
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I G GPI+NL LA P
Sbjct: 224 MFGFFVQAIVPGKGPIENLSDPLAAP 249
>gi|361067651|gb|AEW08137.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160502|gb|AFG62791.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160504|gb|AFG62792.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160506|gb|AFG62793.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160508|gb|AFG62794.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
Length = 132
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 126 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPG 183
AG Y+ D TLF++EM +G+AE RR D PG + K G + YPG
Sbjct: 1 AGTYNYWADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKYLGGSGNPAYPG 60
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
G F+PLG+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLADP
Sbjct: 61 GPLFNPLGFGK-DEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADP 119
Query: 244 GHATVF 249
+ +
Sbjct: 120 FNNNIL 125
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 101/207 (48%), Gaps = 47/207 (22%)
Query: 61 PNRPLWFPGST--PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAG 105
P RPL+ T PP +L G PGD+G+D GL E++H RWAMLGA G
Sbjct: 44 PERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALG 103
Query: 106 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTD------TTTLFIV--EMIFIGWA 149
PELL G+ W+ AG L+Y + + L I+ +++ +G
Sbjct: 104 CIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAI 163
Query: 150 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 209
EG R VN P+ G D YPGG FDPLG P+ EL+ KEIK
Sbjct: 164 EGYR---------VNGGPLG-----EGLDKLYPGG-SFDPLGLAD-DPDTFAELKVKEIK 207
Query: 210 NGRLAMLAVMGAWFQHIYTGTGPIDNL 236
NGRLAM ++ G + Q I TG GP+ NL
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 118/241 (48%), Gaps = 52/241 (21%)
Query: 44 GATA-GTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------- 91
GA+A G + V+ +A P+R W F TP +L G PGD+G+D GL
Sbjct: 18 GASARGQKQVTRAAVEFYGPDRAKWLGPFSDDTP-SYLTGEFPGDYGWDTAGLSADPETF 76
Query: 92 ------EIVHCRWAMLGAAGIFIPELLTKL-GI-LNTPSWYTAGE-------LEYFTDTT 136
E++H RWAMLGA G PELL+K G+ W+ AG L+Y +++
Sbjct: 77 ASYRELELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSS 136
Query: 137 --------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD 188
+ +++ +G AE R VN P+ + D +PGG FD
Sbjct: 137 LVHAQSILAILGCQVVLMGGAEAFR---------VNGGPLGED-----LDKLHPGGA-FD 181
Query: 189 PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
PLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++N H+ADP +
Sbjct: 182 PLGLAD-DPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENWAEHIADPSGSNG 240
Query: 249 F 249
F
Sbjct: 241 F 241
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 104/216 (48%), Gaps = 50/216 (23%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+RP + F G TP +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 40 PDRPQFLGPFSGDTP-SYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGAL 98
Query: 105 GIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIG 147
G PE+L+K G ++ W+ AG L+Y + + +++ +G
Sbjct: 99 GCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMG 158
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
E R P DP++P +K FDPLG P+ EL+ KE
Sbjct: 159 AIEAYRVNG--GPLGEGLDPLYPGDK-------------FDPLGLAD-DPDTFAELKIKE 202
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
IKNGRLAM ++ G + Q + TG GPI+N H+ADP
Sbjct: 203 IKNGRLAMFSMFGFFVQAVVTGKGPIENWAEHVADP 238
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 106/214 (49%), Gaps = 46/214 (21%)
Query: 48 GTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGL---------- 91
GTR + V AAA P + W P PEWLDGSLPGD+GFDPLGL
Sbjct: 40 GTRKLVV-VAAAQPKKS-WIPAVKGGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 97
Query: 92 ---EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMI 144
E++H RWAM GIF+ + + + W+ A G + F+ +L +++
Sbjct: 98 REAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLL 150
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPLGWGSG--- 195
+GW E +RW D P + + P +K D GYPGG +FDPLG+
Sbjct: 151 LMGWVESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTLKD 210
Query: 196 -----SPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
EK++ L+ EIK+ RLAM+A++ +F+
Sbjct: 211 GVYIPDVEKLERLKVAEIKHARLAMVAMLIFYFE 244
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ W +K G DP + + L PG FDPLG G P +K R E+ +G
Sbjct: 54 KSWIPAVKGGGSLVDPEWLDGSL-------PGDYGFDPLGLGK-DPAFLKWYREAELIHG 105
Query: 212 RLAMLAVMGAWFQHIYTG 229
R AM AV+G + ++G
Sbjct: 106 RWAMAAVLGIFVGQAWSG 123
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 99/201 (49%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVD 127
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL--PGV 185
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 186 GE-----------GNDL-YPGGPYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 232
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 233 VQAIVTGKGPLENLLDHLDNP 253
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 89/169 (52%), Gaps = 32/169 (18%)
Query: 91 LEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT------ 136
LE++HCRWAMLGA G PELL + G+ W+ AG L+Y + +
Sbjct: 18 LEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQS 77
Query: 137 --TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 194
++ +++ +G EG R A P TDP+ YPGG FDPLG
Sbjct: 78 ILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD 122
Query: 195 GSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 123 -DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 170
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 112/234 (47%), Gaps = 52/234 (22%)
Query: 45 ATAGTRSVSVSAAA-ADPNRPLW----FPGSTPPEWLDGSLPGDFGFDPLGL-------- 91
A++ R+++ +A P+R W F G P +L G PGD+G+D GL
Sbjct: 13 ASSNVRNIARNAVEWYGPDRAKWLGPFFEGDVP-SYLTGEFPGDYGWDTAGLSADPETFK 71
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLG--ILNTPSWYTAGE-------LEYFTDTT- 136
E++H RWAMLGA G PE+L+K L W+ AG L+Y + +
Sbjct: 72 AYREQELIHARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNPSL 131
Query: 137 -------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 189
+ +++ +G E R VN P+ G DV +PG FDP
Sbjct: 132 VHAQSILAILGCQVVLMGLIEAYR---------VNGGPLG-----KGLDVLHPGEK-FDP 176
Query: 190 LGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
LG P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+N H+ADP
Sbjct: 177 LGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADP 229
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 127/277 (45%), Gaps = 51/277 (18%)
Query: 9 AVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLW-- 66
A+A +SSP+ + + A L + R N T++ S+ P+R +
Sbjct: 3 AMAKLSSPAF--AGQMVNGDFARQLRALNVGERVNMRRGATKAPVSSSPWYGPDRVKYLG 60
Query: 67 -FPGSTPPEWLDGSLPGDFGFDP-------------LGLEIVHCRWAMLGAAGIFIPELL 112
F G PP +L G P G P LE++H RWAMLGA G PELL
Sbjct: 61 PFSGE-PPSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARWAMLGALGCVFPELL 119
Query: 113 TKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWAD 156
++ G+ W+ AG L+Y + + ++ ++I +G EG R A
Sbjct: 120 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
P TDP+ YPGG FDPLG PE EL+ KEIKNGRLAM
Sbjct: 180 --GPLGEITDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMF 223
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253
++ G + Q I TG GP++NL HLADP + +A T
Sbjct: 224 SMFGFYVQAIVTGKGPLENLADHLADPVNNNAWAYAT 260
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 99/201 (49%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVD 127
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL--PGV 185
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 186 GE-----------GNDL-YPGGPYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 232
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 233 VQAIVTGKGPLENLLDHLDNP 253
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 46/220 (20%)
Query: 42 KNGATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGL---- 91
K GA+ + V V+ AAA P + W P PEWLDGSLPGD+GFDPLGL
Sbjct: 35 KVGASVSPKRVIVAVAAA-PKKS-WIPAVKGGGSFIDPEWLDGSLPGDYGFDPLGLGKDP 92
Query: 92 ---------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG----ELEYFTDTTTL 138
E++H RWAM GIFI + + + W+ AG + F+ +L
Sbjct: 93 AFLKWYREAELIHGRWAMAAVVGIFIGQAWSGV------PWFEAGADPNAIAPFS-FGSL 145
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPLGW 192
+++ +GW E +RW D P ++ + P +K + GYPGG +FDPLG+
Sbjct: 146 LGTQLLLMGWVESKRWVDFFNPDSLSVEWATPWSKTAENFGNSTGEQGYPGGKFFDPLGF 205
Query: 193 GSG--------SPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+K++ L+ EIK+ R+AMLA++ +F+
Sbjct: 206 AGAIKDGVYIPDADKLERLKLAEIKHARIAMLAMLIFYFE 245
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ W +K G DP + + L PG FDPLG G P +K R E+ +G
Sbjct: 55 KSWIPAVKGGGSFIDPEWLDGSL-------PGDYGFDPLGLGK-DPAFLKWYREAELIHG 106
Query: 212 RLAMLAVMGAWFQHIYTGT 230
R AM AV+G + ++G
Sbjct: 107 RWAMAAVVGIFIGQAWSGV 125
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 117/252 (46%), Gaps = 53/252 (21%)
Query: 27 ATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD----------PNRPLW---FPGSTPP 73
A +S L G+ +KL + G VS+ A P+R + F G P
Sbjct: 7 ALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAP- 65
Query: 74 EWLDGSLPGDFGFDP------LGLEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTA 126
+L G G DP LE++H RWAMLGA G PELL + G+ W+ A
Sbjct: 66 SYLTGEFHG-LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 124
Query: 127 GE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
G L+Y + + ++ ++I +G EG R A P TDPI
Sbjct: 125 GSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPI--- 179
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
YPGG FDPLG PE + EL+ KE+KNGRLAM ++ G + Q I TG G
Sbjct: 180 ---------YPGG-SFDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 228
Query: 232 PIDNLIAHLADP 243
P++NL HLADP
Sbjct: 229 PLENLADHLADP 240
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 97/206 (47%), Gaps = 52/206 (25%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGIL 118
PP +L G PGD+G+D GL E++H RWAMLGA G PELL + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
Query: 119 NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF--------- 169
+ + G +FTD I G WA P V+ F
Sbjct: 125 FGEAVWVQG---WFTDLQRRRI----------GPTWA---TPSLVHAQEHFSHLGYSSYP 168
Query: 170 ----------PNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 217
P N G D+ YPGG FDPLG + PE EL+ KE+KNGRLAM +
Sbjct: 169 HGSLLRATRVPGNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFS 226
Query: 218 VMGAWFQHIYTGTGPIDNLIAHLADP 243
+ G + Q I TG GP++NL HLADP
Sbjct: 227 MFGFFVQAIVTGKGPLENLADHLADP 252
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 99/201 (49%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K L +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 124
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 125 FKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 182
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+ + + YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 183 GDGNNL------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 229
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 230 VQAIVTGKGPLENLLDHLDNP 250
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 101/207 (48%), Gaps = 51/207 (24%)
Query: 79 SLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWY 124
PGD+G+D GL E++H RWAMLGA G PELL + G+ W+
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 60
Query: 125 TAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
AG L+Y + + T++ ++I +G EG R A P DP+
Sbjct: 61 KAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAG--GPLGEVVDPL- 117
Query: 170 PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229
YPGG FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG
Sbjct: 118 -----------YPGGS-FDPLGLAE-IPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 164
Query: 230 TGPIDNLIAHLADP------GHATVFA 250
GPI+NL HLADP +AT FA
Sbjct: 165 KGPIENLADHLADPVNNNAWAYATNFA 191
>gi|424513524|emb|CCO66146.1| light-harvesting protein of photosystem I [Bathycoccus prasinos]
Length = 212
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 96/200 (48%), Gaps = 40/200 (20%)
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
+W+PG+T P++LDGS+ GD+GFDPL L E+++ RWAM G+ +
Sbjct: 1 MWYPGATAPDYLDGSMAGDYGFDPLRLGANKESLPYLQEAELMNGRWAMYATIGVLATDS 60
Query: 112 LTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
L P ++ AG +Y D TL + ++I +G E R +K G FP
Sbjct: 61 NPSL-----PKFWEAGAADYDIDFKTLVVTQVIVMGILEALRIRGFMKTGESGLGANFP- 114
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
FDP G S + R KE+KNGRLAM+A +G Q TG G
Sbjct: 115 ---------------FDPAGMDSPAA------RVKEVKNGRLAMVAFLGMVSQWAVTGMG 153
Query: 232 PIDNLIAHLADPGHATVFAA 251
PI+ AHLADP ++ +
Sbjct: 154 PIEGFKAHLADPTAVNIYTS 173
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 45/213 (21%)
Query: 49 TRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGL----------- 91
+ S V AAA P + W PG PEWLDGSLPGD+GFDPLGL
Sbjct: 38 SSSKLVIVAAAQPKKS-WLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYR 96
Query: 92 --EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIF 145
E++H RWAM GIF+ + + + W+ A G + F+ +L +++
Sbjct: 97 EAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLL 149
Query: 146 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPLGWGS----- 194
+GW E +RW D P + + P ++ + GYPGG +FDPLG+
Sbjct: 150 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDG 209
Query: 195 ---GSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
EK++ L+ EIK+ R+AMLA++ +F+
Sbjct: 210 VYIADTEKLERLKLAEIKHARIAMLAMLIFYFE 242
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 112/238 (47%), Gaps = 59/238 (24%)
Query: 23 SVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPG 82
S A KASF G KK ATA R V+V AA +R LW P + PP L+G+LPG
Sbjct: 12 SAAPLLKASF-GVKK-------ATAA-RDVTVRAA----DRTLWLPNTVPPAHLNGTLPG 58
Query: 83 DFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG-E 128
D+G+DP+GL E + RWAM G AGI + L + + W++ G E
Sbjct: 59 DYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGVAGILFTDALH----IGSAPWFSIGAE 114
Query: 129 LEYFTDTTTLFIVEMIFIGWAEGRR---WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 185
LE L +E + G+ E +R W + G +N P
Sbjct: 115 LESPIPLWGLATIEFVIFGFLEMKRLEGWKKTGQNGLLNWFP------------------ 156
Query: 186 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
FDPLG S KE+ KE+KNGRLAM A G Q + T GP+ NL H+ADP
Sbjct: 157 -FDPLGMNS------KEMMVKEVKNGRLAMFAWCGFMVQALVTREGPVTNLEKHIADP 207
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K +N
Sbjct: 60 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVNVN 119
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + G
Sbjct: 120 FKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFRINGLDGVG- 178
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 179 ------------NGNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 224
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++N + HL +P
Sbjct: 225 VQAIVTGKGPLENWLDHLDNP 245
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 50/233 (21%)
Query: 45 ATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
A++ R+++ +A P+R W F P +L G PGD+G+D GL
Sbjct: 13 ASSNVRNIARNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKA 72
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLG--ILNTPSWYTAGE-------LEYFTDTT-- 136
E++H RWAMLGA G PE+L+K W+ AG L+Y + +
Sbjct: 73 YREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLV 132
Query: 137 ------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 190
+ +++ +G E R VN P+ G DV +PG FDPL
Sbjct: 133 HAQSILAILGCQVVLMGLIEAYR---------VNGGPLG-----EGLDVLHPGEK-FDPL 177
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
G P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+N H+ADP
Sbjct: 178 GLAD-DPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADP 229
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 120/255 (47%), Gaps = 55/255 (21%)
Query: 17 SSQKSRSVAGATKASFLGG----KKLKLRKNGATAGTRSVSVS------AAAADPNRPLW 66
++ S +V +SFL G + L G G +V+VS AAA P + W
Sbjct: 2 AAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAAVTVSPRRLIVVAAAAPKKS-W 60
Query: 67 FPGS------TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
PG PEWLDGSLPGD+GFDPLGL E++H RWAM GIF
Sbjct: 61 LPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 120
Query: 108 IPELLTKLGILNTPSWYTAG----ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
+ + + + W+ AG + F+ TL ++I +GW E +RW D P
Sbjct: 121 VGQAWSGV------PWFEAGADPNAIAPFS-FGTLLGTQLILMGWVESKRWVDFFNPDSQ 173
Query: 164 NTDPIFPNNKLTGT------DVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEIK 209
+ + P ++ + + GYPGG +FDPL EK++ L+ EIK
Sbjct: 174 SVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDTEKLERLKLAEIK 233
Query: 210 NGRLAMLAVMGAWFQ 224
+ R+AMLA++ +F+
Sbjct: 234 HARIAMLAMLIFYFE 248
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 109/220 (49%), Gaps = 46/220 (20%)
Query: 42 KNGATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGL---- 91
K GA+ + V V+ AAA P + W P PEWLDGSLPGD+GFDPLGL
Sbjct: 35 KVGASVSPKRVIVAVAAA-PKKS-WIPAVKGGGSFIDPEWLDGSLPGDYGFDPLGLGKDP 92
Query: 92 ---------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG----ELEYFTDTTTL 138
E++H RWAM GIFI + + + W+ AG + F+ +L
Sbjct: 93 AFLKWYREAELIHGRWAMAAVVGIFIGQAWSGV------PWFEAGADPNAIAPFS-FGSL 145
Query: 139 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPLGW 192
+++ +GW E +RW D P + + P +K + GYPGG +FDPLG+
Sbjct: 146 LGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFGNSTGEQGYPGGKFFDPLGF 205
Query: 193 GSG--------SPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+K++ L+ EIK+ R+AMLA++ +F+
Sbjct: 206 AGAIKDGVYIPDADKLERLKLAEIKHARIAMLAMLIFYFE 245
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ W +K G DP + + L PG FDPLG G P +K R E+ +G
Sbjct: 55 KSWIPAVKGGGSFIDPEWLDGSL-------PGDYGFDPLGLGK-DPAFLKWYREAELIHG 106
Query: 212 RLAMLAVMGAWFQHIYTGT 230
R AM AV+G + ++G
Sbjct: 107 RWAMAAVVGIFIGQAWSGV 125
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 103/230 (44%), Gaps = 52/230 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
PNR W + + P + PGD+G+D GL E++H RWAMLGA
Sbjct: 43 PNRAKWLGPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGAL 102
Query: 105 GIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFI---------VEMIFIG 147
G PELL K G W+ AG L+Y + + + ++I +G
Sbjct: 103 GCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIRRHPGRFKVILMG 162
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
EG R P DP++P G FDPLG P+ EL+ KE
Sbjct: 163 LVEGYRVNG--GPAGEGLDPLYP-------------GESFDPLGLAD-DPDTFAELKVKE 206
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
IKNGRLAM ++ G + Q I TG GPI NL HL++P FA FTP
Sbjct: 207 IKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTP 256
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 104/219 (47%), Gaps = 38/219 (17%)
Query: 61 PNRPLWFPGSTPPE-----WLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R L+ PG L+G+LPGD+G+DPLGL E++H RWAML
Sbjct: 51 PDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAMLA 110
Query: 103 AAGIFIPELLTKLGI-LNTPSWY-------TAGELEYF-------TDTTTLFIV---EMI 144
AAG IPE L G + +W+ G L +F ++ LF+V +
Sbjct: 111 AAGAIIPEGLAANGADVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANVA 170
Query: 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204
+G AE R G F + D YPGG FDPLG PE + EL+
Sbjct: 171 LMGAAENYRRTGEGPAGYSPGVGKFDESAYDSMDSLYPGGP-FDPLGLAD-DPEVLAELK 228
Query: 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
KEIKNGRLAM++ +G Q TG GP N H+ADP
Sbjct: 229 VKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADP 267
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 99/201 (49%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 23 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 82
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 83 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 140
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
G D+ YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 141 GE-----------GNDL-YPGGQYFDPLGLAD-DPTTFAELKVKEIKNGRLAMFSMFGFF 187
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 188 VQAIVTGKGPLENLLDHLDNP 208
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 115/255 (45%), Gaps = 45/255 (17%)
Query: 11 AAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSV---SVSAAAADPNRPLWF 67
A I++ + +S+A A AS G + G+T G + S +A + R +WF
Sbjct: 102 ALITTILYKSKQSIALAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGSAPEEERLVWF 161
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
P +TPP+ L G PGD GFDPLGL E+ H R AMLG G +PEL
Sbjct: 162 PNATPPDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFS 221
Query: 115 LGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
G W+ +L F + T L +V + I E R + F N
Sbjct: 222 QG-----PWF---DLSSF-NLTRLGLVALQVIAPLEYWR-----------GNRGFSWNGD 261
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
G D YPG FDPL +E + KEIKNGRLAM A++G Q TG P+
Sbjct: 262 DGPDQSYPG---FDPLRLTD------EETKLKEIKNGRLAMTAMLGLEVQSHITGKSPLV 312
Query: 235 NLIAHLADPGHATVF 249
NL HL++P +
Sbjct: 313 NLSEHLSNPASVNIL 327
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 92/218 (42%), Gaps = 42/218 (19%)
Query: 44 GATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------ 91
GA T +++ A R LWFP PP +L G GD GFDP GL
Sbjct: 699 GANIATNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQV 758
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAE 150
E+ HCR +ML G +PEL L +W+ ++ D +V + + E
Sbjct: 759 AEVFHCRLSMLALVGCLVPEL------LGNGAWF---QIWDKVDFNRFAVVALQVVAPLE 809
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
R + F N D YPG FDPL + E KE EIKN
Sbjct: 810 YWR-----------GNGGFLWNDEETIDQSYPG---FDPLNL---TTEYTKE---AEIKN 849
Query: 211 GRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
GRLAM+ + G Q TG PI NLI HL+ P A +
Sbjct: 850 GRLAMIGMFGLEVQSHVTGKSPITNLIDHLSHPLTANI 887
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
LWFP + PP L G P D GFDPL L E+ H R AML G +PEL
Sbjct: 910 LWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPEL 969
Query: 112 LTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
L K +W+ AG+ D L + M E R N
Sbjct: 970 LGK------GAWFEAGD---SVDGLKLGFITMAIAAPTEYWRGQGGF------------N 1008
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
+ D YPG FDPL R E+KNGRLA+ AV G Q++ TG
Sbjct: 1009 WQKGDLDRSYPG---FDPLNL------TTDYTRAAEVKNGRLALTAVAGLTAQYLATGES 1059
Query: 232 PIDNLIAHLADPGHATV 248
P+ NL AHLA+P A +
Sbjct: 1060 PLANLTAHLANPLGANI 1076
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
LWFP + PP L G P D GFDPL L E+ H R AML G +PEL
Sbjct: 536 LWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPEL 595
Query: 112 LTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
L K +W+ AG+ D L + M E R N
Sbjct: 596 LGK------GAWFEAGD---SVDGLKLGFITMAIAAPTEYWRGQGGF------------N 634
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
+ D YPG FDPL R E+KNGRLA+ AV G Q++ TG
Sbjct: 635 WQKGDLDRSYPG---FDPLNL------TTDYTRAAEVKNGRLALTAVAGLTAQYLATGES 685
Query: 232 PIDNLIAHLADPGHATV 248
P+ NL AHLA+P A +
Sbjct: 686 PLANLSAHLANPIGANI 702
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 84/203 (41%), Gaps = 62/203 (30%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
RPLWFP + P WL G GD GFDP GL E+ H R AML G +
Sbjct: 348 ERPLWFPNTLAPSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALV 407
Query: 109 PELLTKLGILNTPSWYTAG--------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKP 160
P+ L K GI WY A E+ FT +F V A G +
Sbjct: 408 PDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVFEV-------ARGVK------- 447
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
N+DP YPG FDPL + + KE EIKNGRLA+ A++G
Sbjct: 448 --ENSDPT----------TIYPG---FDPLNL---TTDYTKE---AEIKNGRLALTALLG 486
Query: 221 AWFQHIYTGTGPIDNLIAHLADP 243
Q G P+ NL HL P
Sbjct: 487 FEVQRHVVGGSPLANLADHLQQP 509
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 109/232 (46%), Gaps = 49/232 (21%)
Query: 34 GGKKLKLRKNGATAGTRSVS----VSAAAADPNRPLWFPGS------TPPEWLDGSLPGD 83
GG + + GA G V V AAA P + W P PEWLDGSLPGD
Sbjct: 19 GGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKS-WIPAVKGGGNLIDPEWLDGSLPGD 77
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA---- 126
+GFDPLGL E++H RWAM GIF+ + + + W+ A
Sbjct: 78 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADP 131
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP------NNKLTGTDVG 180
G + F+ +L +++ +GW E +RW D P + P N T + G
Sbjct: 132 GAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWLRTAENFANTTGEQG 190
Query: 181 YPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
YPGG +FDPLG+ EK++ L+ EIK+ R+AMLA++ +F+
Sbjct: 191 YPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFE 242
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 118/250 (47%), Gaps = 50/250 (20%)
Query: 17 SSQKSRSVAGATKASFLGGKKLK---LRKNGA--TAGTRSVSVSAAAADPNRPLWFPGST 71
++ S +V +SFL G K L GA TA S AA P + W P
Sbjct: 2 AAATSGAVLNGLGSSFLRGPKRSHALLSAIGANRTASGASTKFVVMAAQPKKS-WIPAVK 60
Query: 72 ------PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
PEWLDGSLPGD+GFDPLGL E++H RWAM GIF+ +
Sbjct: 61 GGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQAW 120
Query: 113 TKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
+ + W+ A G + F+ +L ++I +GW E +RW D P + +
Sbjct: 121 SGI------PWFEAGADPGAIAPFS-FGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWA 173
Query: 169 FPNNKLTGT------DVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGRLA 214
P ++ + + GYPGG +FDPLG+ EK++ L+ EIK+ RLA
Sbjct: 174 TPWSRTSENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHARLA 233
Query: 215 MLAVMGAWFQ 224
MLA++ +F+
Sbjct: 234 MLAMLIFYFE 243
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 97/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 128
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGL--PGV 186
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+ + YPG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 187 GEGNNL------------YPGDQYFDPLGLAD-DPATFAELKVKEIKNGRLAMFSMFGFF 233
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL DP
Sbjct: 234 VQAIVTGKGPLENLLDHLDDP 254
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 108/233 (46%), Gaps = 50/233 (21%)
Query: 49 TRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL------------- 91
R+VS +A P+RP W F P +L G PGD+G+D GL
Sbjct: 2 VRNVSRNAIEWYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQ 61
Query: 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGE-------LEYFTDTT------ 136
E++H RWAMLGA G PE+L K ++ W+ AG L+Y + +
Sbjct: 62 ELIHARWAMLGALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVHAQS 121
Query: 137 --TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 194
+ +++ +G E R P DP+ P +K FDPLG
Sbjct: 122 ILAILGCQVVLMGLIEAYRVNG--GPLGEGLDPLHPGDK-------------FDPLGLAD 166
Query: 195 GSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+N H+ADP + T
Sbjct: 167 -DPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFNVT 218
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 124
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 125 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 182
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+ + YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 183 GEGNNL------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 229
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ H+ +P
Sbjct: 230 VQAIVTGKGPLENLLDHIDNP 250
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 122
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 123 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 180
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+ + YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 181 GEGNNL------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 227
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ H+ +P
Sbjct: 228 VQAIVTGKGPLENLLDHIDNP 248
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 131/301 (43%), Gaps = 91/301 (30%)
Query: 13 ISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTP 72
++ P+ Q R VA + F GGK A + V+ ++ ++D RPLWFPG+
Sbjct: 17 LADPAPQNGRIVA---RFGFGGGKP-------KAAVPKKVAKTSISSD--RPLWFPGAVA 64
Query: 73 PEWLDGSLPGDFGFDPLG-----------LEIVHCRWAMLGAAGIFIPE----------- 110
P++LDGSL GD+GFDP G L+ + A A GI
Sbjct: 65 PDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSDVKSTPL 124
Query: 111 -----------------------LLTKLGILNTP-----SWYTAGELEYFTDT------- 135
+L LG L +W AG++E +
Sbjct: 125 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQPL 184
Query: 136 ----TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 191
+TL +E++ IG+ E +R A++ P +L YPGG +FDPL
Sbjct: 185 PFTISTLIWIEVLVIGYIEFQRNAELD-----------PEKRL------YPGGSYFDPLA 227
Query: 192 WGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA 251
+ PEK + L+ EIK+ RLAM+A +G Q TG GP++N HL+DP H T+F
Sbjct: 228 L-AADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDT 286
Query: 252 F 252
F
Sbjct: 287 F 287
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 50/233 (21%)
Query: 45 ATAGTRSVSVSAAA-ADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL--------- 91
A++ R++ +A P+R W F P +L G PGD+G+D GL
Sbjct: 13 ASSNVRNIVRNAVEWYGPDRAKWLGPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKA 72
Query: 92 ----EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTT-- 136
E++H RWAMLGA G PE+L+K ++ W+ AG L+Y + +
Sbjct: 73 YREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLV 132
Query: 137 ------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 190
+ +++ +G E R VN P+ G DV +PG FDPL
Sbjct: 133 HAQSILAILGCQVVLMGLIEAYR---------VNGGPLG-----EGLDVLHPGEK-FDPL 177
Query: 191 GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
G P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+N H+ADP
Sbjct: 178 GLAD-DPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADP 229
>gi|226496924|ref|NP_001148598.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|195620680|gb|ACG32170.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 151
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 126 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPG 183
AG Y+ D+ TLF+ M +G+AE RR D PG + K L G+ D YPG
Sbjct: 21 AGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYPG 80
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
G F+PLG+G E + EL+ KEIKNGRLAMLA++G + Q + TG GP NL+ HLADP
Sbjct: 81 GPLFNPLGFGKTEKE-MNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADP 139
Query: 244 GHATVFAAF 252
+ V +
Sbjct: 140 VNNNVLTSL 148
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 110/253 (43%), Gaps = 79/253 (31%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHCR 97
+RPLW+PG+ PEWLDGSL GD+GFDP GL +++ R
Sbjct: 55 DRPLWYPGAISPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 114
Query: 98 WAMLGAAGI-FIP--------------------ELLTKLGILNTP-----SWYTAGELEY 131
A F P +L LG L+ +W AG++E
Sbjct: 115 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 174
Query: 132 FTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
+ +TL +E++ +G+ E +R N +L
Sbjct: 175 VDGSSYLGQPLPFSISTLIWIEVLVVGYIEFQR-----------------NAELDSEKRL 217
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG +FDPLG + PEK +L+ EIK+ RLAM+A +G Q TG GP++N HL
Sbjct: 218 YPGGKYFDPLGL-AADPEKRAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 276
Query: 241 ADPGHATVFAAFT 253
+DP H T+ F+
Sbjct: 277 SDPLHTTIIDTFS 289
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 99/201 (49%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK-LGI- 117
P +L G PGD+G+D GL E++H RWAMLGA G PE+L K L +
Sbjct: 30 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 89
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 90 FKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV 147
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
+ + + YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 148 GDGNNL------------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 194
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 195 VQAIVTGKGPLENLLDHLDNP 215
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 119/254 (46%), Gaps = 55/254 (21%)
Query: 17 SSQKSRSVAGATKASFLGG----KKLKLRKNGATAGTRSVSVS------AAAADPNRPLW 66
++ S +V +SFL G + L G G +V+VS AAA P + W
Sbjct: 2 AAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAAVTVSPRRLIVVAAAAPKKS-W 60
Query: 67 FPGS------TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIF 107
PG PEWLDGSLPGD+GFDPLGL E++H RWAM GIF
Sbjct: 61 LPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 120
Query: 108 IPELLTKLGILNTPSWYTAG----ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
+ + + + W+ AG + F+ TL ++I +GW E +RW D P
Sbjct: 121 VGQAWSGV------PWFEAGADPNAIAPFS-FGTLLGTQLILMGWVESKRWVDFFNPDSQ 173
Query: 164 NTDPIFPNNKLTGT------DVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEIK 209
+ + P ++ + + GYPGG +FDPL EK++ L+ EIK
Sbjct: 174 SVEWATPWSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDTEKLERLKLAEIK 233
Query: 210 NGRLAMLAVMGAWF 223
+ R+AMLA++ +F
Sbjct: 234 HARIAMLAMLIFYF 247
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 110/259 (42%), Gaps = 91/259 (35%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHCR 97
+RPLW+PG+ PE+LDGSL GD+GFDP GL +I+ R
Sbjct: 51 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDSLDQNLAKNMAGDIIGTR 110
Query: 98 --------------------------------WAMLGAAGIFIPELLTKLGILNTPSWYT 125
WAML G E LT + +W
Sbjct: 111 VESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQD 164
Query: 126 AGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
AG++E + +TL +E++ IG+ E +R A++ P +L
Sbjct: 165 AGKVELVEGSSYLGQPLPFSISTLIWIEVLLIGYIEFQRNAELD-----------PEKRL 213
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
YPGG +FDPLG + PEK L+ EIK+ RLAM+ +G Q TG GP++
Sbjct: 214 ------YPGGKFFDPLGL-AADPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKGPLN 266
Query: 235 NLIAHLADPGHATVFAAFT 253
N HL+DP H T+ T
Sbjct: 267 NWATHLSDPLHTTIIDTLT 285
>gi|357445799|ref|XP_003593177.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
gi|355482225|gb|AES63428.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
Length = 261
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 115/256 (44%), Gaps = 57/256 (22%)
Query: 17 SSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPL----------- 65
++ S +V +SFL G K TA V V AA P R +
Sbjct: 2 AAATSGAVLNGLGSSFLSGGKRSQTLLATTAIGAKVGV--AAGSPKRLIVAAAASAPKKS 59
Query: 66 WFPGS------TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGI 106
W PG PEWLDGSLPGDFGFDPLGL E++H RWAM GI
Sbjct: 60 WIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGI 119
Query: 107 FIPELLTKLGILNTPSWYTAG----ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGC 162
F+ + + + W+ AG + F+ TL ++I +GW E +RW D P
Sbjct: 120 FVGQAWSGV------PWFEAGADPNAIAPFS-FGTLLGTQLILMGWVESKRWVDFFNPDS 172
Query: 163 VNTDPIFPNNKLTGT------DVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEI 208
+ + P +K + GYPGG +FDPL EK++ L+ EI
Sbjct: 173 QSIEWATPWSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEI 232
Query: 209 KNGRLAMLAVMGAWFQ 224
K+ RLAMLA++ +F+
Sbjct: 233 KHARLAMLAMLIFYFE 248
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 97/195 (49%), Gaps = 39/195 (20%)
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PGS P E+L+ LPG+F FDPL L E++HCRWAMLGAAG E+L
Sbjct: 39 PGSEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGL 97
Query: 115 LGILNTPSWYTAGE------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI 168
+ P W G+ +E D T+ VE++ + AEG R
Sbjct: 98 GNWYDAPLWAVTGDKPTWFGIEVPFDIATILGVEVVAMAVAEGLR--------------- 142
Query: 169 FPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
N+ YPGG FDPLG+ S P+ ++ + KE+KNGRLAM+A +G QH T
Sbjct: 143 --NDNQDMEKRLYPGGA-FDPLGF-SKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAAT 198
Query: 229 GTGPIDNLIAHLADP 243
G ++ L HL+ P
Sbjct: 199 GKPILEALGDHLSSP 213
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 102/217 (47%), Gaps = 50/217 (23%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL------------EIVHCRWAMLGA 103
P+RP + P + P +++G L GD+G+DPLGL E++H RWAMLG
Sbjct: 68 PDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLGNKGGVEKYRPYEVLHGRWAMLGV 127
Query: 104 AGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
G+ +PE L G N W+ +G + + TL WA I P
Sbjct: 128 VGMLVPEGLYANGNTNIKGAVWWDSGAV-LLDPSATL--------------TWAGIPNPV 172
Query: 162 CVNTDPIF--------PNNKL-------TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 206
+ IF N + TG D YPGG +FDPLG S P K EL+ K
Sbjct: 173 PLALAVIFEVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDPLGLAS-DPSKADELKVK 231
Query: 207 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
EIKNGRLAM+A +G Q+ T GP N HLADP
Sbjct: 232 EIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADP 268
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 45/201 (22%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P +L G PG++G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 20 PSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVD 79
Query: 120 --TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGC 162
P W+ AG L+Y + + ++I +G EG R
Sbjct: 80 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGLR--------I 131
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
D + N L YPGG +FDPLG P EL+ KEIKNGRLAM ++ G +
Sbjct: 132 NGLDGVGEGNDL------YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFF 184
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL+ HL +P
Sbjct: 185 VQAIVTGKGPLENLLDHLDNP 205
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 96/212 (45%), Gaps = 49/212 (23%)
Query: 76 LDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLG--ILNT 120
L G PGD+G+D GL E++H RWAMLGA G PE+L + G
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 121 PSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
W+ AG L+Y + I ++I +G EG R P
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG--GPAGEGL 118
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
DP++P FDPLG P+ EL+ KEIKNGRLAM ++ G + Q
Sbjct: 119 DPLYPGES-------------FDPLGLAD-DPDTFAELKIKEIKNGRLAMFSMFGFYVQA 164
Query: 226 IYTGTGPIDNLIAHLADPGHATVFA---AFTP 254
I TG GP++N H+ADP A F+ FTP
Sbjct: 165 IVTGKGPVENWAEHVADPFTANAFSYATKFTP 196
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 109/257 (42%), Gaps = 91/257 (35%)
Query: 64 PLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHCR-- 97
PLW+PG+ PE+LDGSL GD+GFDP GL +I+ R
Sbjct: 55 PLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTE 114
Query: 98 ------------------------------WAMLGAAGIFIPELLTKLGILNTPSWYTAG 127
WAML G E LT + +W AG
Sbjct: 115 LADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGV------TWQDAG 168
Query: 128 ELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG 176
++E + TTL +E++ IG+ E +R A++ P +L
Sbjct: 169 KVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELD-----------PEKRL-- 215
Query: 177 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 236
YPGG +FDPLG S PEK L+ EIK+ RLAM+ +G Q TG GP++N
Sbjct: 216 ----YPGGSYFDPLGLAS-DPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNW 270
Query: 237 IAHLADPGHATVFAAFT 253
HL+DP H T+ F+
Sbjct: 271 ATHLSDPLHTTIIDTFS 287
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 89/201 (44%), Gaps = 68/201 (33%)
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123
Query: 118 LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGC 162
W+ AG L+Y + + ++ +++ +G EG R AD
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAD------ 177
Query: 163 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAW 222
PE EL+ KEIKNGRLAM ++ G +
Sbjct: 178 ---------------------------------DPEAFAELKVKEIKNGRLAMFSMFGFF 204
Query: 223 FQHIYTGTGPIDNLIAHLADP 243
Q I TG GP++NL HLADP
Sbjct: 205 VQAIVTGKGPVENLADHLADP 225
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 86/187 (45%), Gaps = 41/187 (21%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P WL LPG++GFDPL L E++H RWAMLG AG ELL
Sbjct: 39 WLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL 98
Query: 113 TKLGILNTPSWYTAGE------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
+ P W G +E D L E + + AEG+R
Sbjct: 99 GYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRG------------ 146
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
V YPGG FDPLG+ S K EL+ KEIKNGRLAM+A +G QH
Sbjct: 147 --------DAGGVVYPGGA-FDPLGFAKDS-SKSGELKLKEIKNGRLAMVAFLGFVAQHA 196
Query: 227 YTGTGPI 233
TG GPI
Sbjct: 197 ATGKGPI 203
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 103/220 (46%), Gaps = 49/220 (22%)
Query: 61 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAA 104
P+R LW + P +L G PGD+G+D GL E++H RWAMLGA
Sbjct: 11 PDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGAL 70
Query: 105 GIFIPELLTKLG--ILNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIG 147
G PE+L+K W+ AG L+Y + + + +++ +G
Sbjct: 71 GCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMG 130
Query: 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKE 207
E R VN P+ G D +PG FDPLG P+ EL+ KE
Sbjct: 131 LIEAYR---------VNGGPLG-----EGLDTLHPGES-FDPLGLAD-DPDTFAELKIKE 174
Query: 208 IKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHAT 247
IKNGRLAM ++ G + Q I TG GPI+N H+ADP + T
Sbjct: 175 IKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFNVT 214
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 88/169 (52%), Gaps = 29/169 (17%)
Query: 91 LEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTL---- 138
+E++H RWAMLGA G PELL K GI W+ AG L Y + + +
Sbjct: 16 IEVIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFQDGGLNYLGNESLVHAQS 75
Query: 139 ----FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 194
V+++ +G AE R A+ PG D D YPGG FDPLG
Sbjct: 76 ILATLAVQVLLMGAAESYR-ANGGAPGGFGED----------LDSLYPGGA-FDPLGLAD 123
Query: 195 GSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
P+ + EL+ KEIKNGRLAM ++ G + Q I TG GPI NL AHL+DP
Sbjct: 124 -DPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDP 171
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 117/250 (46%), Gaps = 56/250 (22%)
Query: 31 SFLGGKKLKLRKNGATAGTRSVSVSAAAAD----PNRPLW---FPGSTPPEWLDGSLPGD 83
+F+G K + K T+ R+ S+A P+RP + F G P +L G PGD
Sbjct: 8 TFVGSKPVN--KKMVTSMRRTQKKSSAPDSVWYGPDRPQFLGPFSGDCP-SYLTGEFPGD 64
Query: 84 FGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE 128
+G+D GL E++H RWAMLGA G PE+L+K G ++ W+ AG
Sbjct: 65 YGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGS 124
Query: 129 -------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK 173
L+Y + + +++ +G E R P DP++P +K
Sbjct: 125 QIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNG--GPLGEGLDPLYPGDK 182
Query: 174 LTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233
FDPLG P+ EL+ KEIKNGRLAM ++ G + Q + TG GPI
Sbjct: 183 -------------FDPLGLAD-DPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPI 228
Query: 234 DNLIAHLADP 243
+N H+A+P
Sbjct: 229 ENWAEHVANP 238
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 89/197 (45%), Gaps = 41/197 (20%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELL 112
W PGS P WL LPG++GFDPL L E++H RWAMLG AG ELL
Sbjct: 39 WLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL 98
Query: 113 TKLGILNTPSWYTAG------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTD 166
+ P W G +E D L E + + AEG+
Sbjct: 99 GYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQ-------------- 144
Query: 167 PIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226
+ PGG FDPLG+ S K EL+ KEIKNGRLAM+A +G QH
Sbjct: 145 ------RRRCRRRRLPGGA-FDPLGFAKDS-SKSGELKLKEIKNGRLAMVAFLGFVAQHA 196
Query: 227 YTGTGPIDNLIAHLADP 243
TG P+ L HLA+P
Sbjct: 197 ATGKAPLAALGEHLANP 213
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 118/250 (47%), Gaps = 57/250 (22%)
Query: 21 SRSVAGATKASFL-GGKKLKLR-------KNGATAGTRSVSVSAAAADPNRPLWFPGS-- 70
S +V +SFL GG K + + G A + +V AAAA + W P
Sbjct: 5 SAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKS---WIPAVRG 61
Query: 71 ----TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
PEWLDGSLPGD+GFDPLGL E++H RWAM GIF+ + +
Sbjct: 62 GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 121
Query: 114 KLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIF 169
+ W+ A G + F+ TL ++I +GW E +RW D P + +
Sbjct: 122 GI------PWFEAGADPGAIAPFS-FGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWAT 174
Query: 170 PNNK-------LTGTDVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGRLA 214
P +K TG + GYPGG +FDPL EK++ L+ EIK+ RLA
Sbjct: 175 PWSKTAENFANFTG-EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLA 233
Query: 215 MLAVMGAWFQ 224
MLA++ +F+
Sbjct: 234 MLAMLIFYFE 243
>gi|145079840|tpg|DAA05941.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Micromonas sp. CCMP490]
Length = 245
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 45/214 (21%)
Query: 50 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHC 96
R +SV AAA + W PGS PP +LDG++ GD+GFDPL L E+++
Sbjct: 22 RGMSVKAAAGPQH---WLPGSEPPAYLDGTMAGDYGFDPLRLGQNAETLPYLQEAELMNG 78
Query: 97 RWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFT-DTTTLFIVEMIFIGWAEGRRWA 155
RWAM AGI + + P ++ AG+ D TL ++++ +G+ E R
Sbjct: 79 RWAMHATAGILFTD------AVGLPKFWEAGDAALGDWDLKTLVAIQVVVMGFLEAARIR 132
Query: 156 DIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 215
G + G G FDP G S + ++ KEIKNGRLAM
Sbjct: 133 GFYATG----------------ESGVVGNFPFDPSGQDSPA------MKVKEIKNGRLAM 170
Query: 216 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249
++ +G Q+ TGT P++ L AH+A+P +F
Sbjct: 171 MSFLGMVSQYAVTGTSPLEGLKAHMANPTQVNIF 204
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 113/249 (45%), Gaps = 49/249 (19%)
Query: 15 SPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTP 72
S SS ++V + +G ++ +RK A + VS + +R L+ P
Sbjct: 9 SSSSFAGKAVKNLPSPAHIGEARVTMRKTAVKA--KQVSSGSPWYGSDRVLYLGPLSGEP 66
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI-L 118
P +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 119 NTPSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCV 163
W+ AG L+Y + ++ +++ +G EG R A P
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGE 184
Query: 164 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223
DP+ YPGG FDPLG PE EL+ KEIKNGRLAM ++ G +
Sbjct: 185 IVDPL------------YPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 230
Query: 224 QHIYTGTGP 232
Q I TG P
Sbjct: 231 QAIVTGGEP 239
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 115/249 (46%), Gaps = 54/249 (21%)
Query: 21 SRSVAGATKASFLGGKKLKLRKNGATAGTR-------SVSVSAAAADPNRPLWFPGST-- 71
S +V +SFL G K GA R + AAAA P + W P
Sbjct: 5 SAAVLNGLSSSFLTGGKNSQALLGAPVAARIGGLATPKRCIVAAAAAPKKS-WIPAVKGG 63
Query: 72 ----PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
PEWLDGSLPGD+GFDPLGL E++H RWAM GIF+ + +
Sbjct: 64 GNLLDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSG 123
Query: 115 LGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
+ W+ A G + F+ +L +++ +GW E +RW D P + + P
Sbjct: 124 I------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 176
Query: 171 NNK-------LTGTDVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGRLAM 215
+K TG + GYPGG +FDPL EK++ L+ EIK+ RLAM
Sbjct: 177 WSKTAENFANFTG-EQGYPGGKFFDPLSLAGTLQDGVYIPDTEKLERLKVAEIKHARLAM 235
Query: 216 LAVMGAWFQ 224
LA++ +F+
Sbjct: 236 LAMLIFYFE 244
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 93/195 (47%), Gaps = 40/195 (20%)
Query: 73 PEWLDGSLPGDFGFDPLGL-----------EIVHCRWAMLGAAGIFIPELLTKLGI--LN 119
P LDGSL GD GFDPLGL E++H RWAMLG G+ +PELL + G+ L
Sbjct: 174 PAHLDGSLCGDAGFDPLGLGKDDLPRMRELELLHARWAMLGIVGVAVPELLERYGVADLG 233
Query: 120 TPSWYTAG--------ELEYF----------TDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
P W+ G L+YF + + +++ +G E R+
Sbjct: 234 EPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQVVLMGGPEYARY------- 286
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
V D + P D YPGG FDP + E K+ + EIK+GRLAM+A++G
Sbjct: 287 -VGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQ-KVMEIKHGRLAMIAMLGV 344
Query: 222 WFQHIYTGTGPIDNL 236
Q T GPI+NL
Sbjct: 345 AAQAFVTRAGPIENL 359
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 105/207 (50%), Gaps = 28/207 (13%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL------------EIVHCRWAMLGA 103
P+R L+ PG + P +LDG+L GD+GFDPLGL E++H RWAML
Sbjct: 105 PDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGADGAIKQYRVAEVIHARWAMLAI 164
Query: 104 AGIFIPELLTKLGIL--NTPSWYTAGEL--EYFTDTTTLFI-VEMIFIGWAEGRRWADII 158
G+ IPE L G + T + GE +F + +F V++ + E R +
Sbjct: 165 PGVVIPEALGLPGGVWTETGKVFLDGETGRPFFLENPIVFAAVQVALMAGVEQFRSSGEG 224
Query: 159 KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW--GSGSPEKVKELRTKEIKNGRLAML 216
G V F + G D PGG PL + + +P+ + L+ KEIKNGRLAM+
Sbjct: 225 PAGFVPFKGKFDESAFKGLDPINPGG----PLDFFNVASNPQDLALLKVKEIKNGRLAMI 280
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
A++G + Q + TG GP N H+ADP
Sbjct: 281 AMLGVFVQGLTTGEGPAANWGKHVADP 307
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 113/255 (44%), Gaps = 45/255 (17%)
Query: 11 AAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSV---SVSAAAADPNRPLWF 67
A I++ + +S+A A AS G + G+T G + S A + R +WF
Sbjct: 102 ALITTILYKSKQSIALAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGNAPEEERLVWF 161
Query: 68 PGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK 114
P +TPP+ L G PGD GFDPLGL E+ H R AMLG G +PEL
Sbjct: 162 PNATPPDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFS 221
Query: 115 LGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 174
G W+ +L F + T L +V + I E R + F N
Sbjct: 222 QG-----PWF---DLSGF-NLTRLGLVALQVIAPLEYWR-----------GNRGFSWNGD 261
Query: 175 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 234
G D YPG FDPL E + KEIKNGRLAM A++G Q TG P+
Sbjct: 262 DGPDQSYPG---FDPLRLTD------DETKLKEIKNGRLAMTAMLGLEVQSHITGKSPLV 312
Query: 235 NLIAHLADPGHATVF 249
NL HL++P +
Sbjct: 313 NLSEHLSNPASVNIL 327
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 92/218 (42%), Gaps = 42/218 (19%)
Query: 44 GATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------ 91
GA T +++ A R LWFP PP +L G GD GFDP GL
Sbjct: 699 GANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQV 758
Query: 92 -EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAE 150
E+ HCR +ML G +PEL L +W+ ++ D +V + + E
Sbjct: 759 AEVFHCRLSMLALVGCLVPEL------LGNGAWF---QIWDKVDFNRFAVVALQVVAPLE 809
Query: 151 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKN 210
R + F N D YPG FDPL + E KE EIKN
Sbjct: 810 YWR-----------GNGGFLWNDEETVDQSYPG---FDPLNL---TTEYTKE---AEIKN 849
Query: 211 GRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 248
GRLAM+ + G Q TG PI NLI HL+ P A +
Sbjct: 850 GRLAMIGMFGLEVQSHVTGKSPITNLIDHLSHPLTANI 887
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 105/243 (43%), Gaps = 44/243 (18%)
Query: 20 KSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRP-LWFPGSTPPEWLDG 78
+ V G+ A+ + L++N A + V+ A+ ++ LWFP + PP L G
Sbjct: 490 QRHVVGGSPLANLAEHLQQPLQRNIADSIMHQWPVAMFASSGHKDGLWFPNAEPPAHLTG 549
Query: 79 SLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 125
P D GFDPL L E+ H R AML G +PELL K +W+
Sbjct: 550 EYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK------GAWFE 603
Query: 126 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 185
AG+ D L + M E R G N + +L D YPG
Sbjct: 604 AGD---SVDGLKLGFITMAIAAPTEYWR-----GQGGFN----WQKGEL---DRSYPG-- 646
Query: 186 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGH 245
FDPL R E+KNGRLA+ AV G Q++ TG P+ NL AHLA+P
Sbjct: 647 -FDPLNL------TTDYTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIG 699
Query: 246 ATV 248
A +
Sbjct: 700 ANI 702
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 85/203 (41%), Gaps = 62/203 (30%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFI 108
RPLWFP + P WL+G GD GFDP GL E+ H R AML G +
Sbjct: 348 ERPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALV 407
Query: 109 PELLTKLGILNTPSWYTAG--------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKP 160
P+ L K GI WY A E+ FT +F V A G +
Sbjct: 408 PDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVFEV-------ARGVK------- 447
Query: 161 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMG 220
N+DP YPG FDPL + + KE EIKNGRLA+ A++G
Sbjct: 448 --ENSDPT----------TIYPG---FDPLNL---TTDYTKE---AEIKNGRLALTALLG 486
Query: 221 AWFQHIYTGTGPIDNLIAHLADP 243
Q G P+ NL HL P
Sbjct: 487 FEVQRHVVGGSPLANLAEHLQQP 509
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 19/77 (24%)
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
LWFP + PP L G P D GFDPL L E+ H R AML G +PEL
Sbjct: 910 LWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPEL 969
Query: 112 LTKLGILNTPSWYTAGE 128
L K +W+ AG+
Sbjct: 970 LGK------GAWFEAGD 980
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 44/175 (25%)
Query: 74 EWLDGSLPGDFGFDPLGL--------EIVHCRWAMLGAAGIFIPELLT-KLGILNTPSWY 124
E +D S PG FDPL L EI + R AM+G G+ + +T K I N
Sbjct: 823 ETVDQSYPG---FDPLNLTTEYTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNL---- 875
Query: 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPI-FPNNK----LTGTDV 179
+++ + T I + W + +A + D + FPN + LTG
Sbjct: 876 ----IDHLSHPLTANIGTNLSQPWPQVAMFAS-----SGHKDGLWFPNAEPPAHLTGE-- 924
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM----------GAWFQ 224
YP FDPL + P+ +R E+ +GRLAML ++ GAWF+
Sbjct: 925 -YPADRGFDPLNLAA-DPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGKGAWFE 977
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 107/238 (44%), Gaps = 29/238 (12%)
Query: 12 AISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST 71
A+SSPS + + LG ++ +RK G A S D + L
Sbjct: 5 ALSSPSLAGKAFQLAPSASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYLGPFSGE 64
Query: 72 PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117
PP +L G PGD+G+D GL E++HCRWAMLGA G PELL + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 118 LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 170
W+ AG L+Y + + ++ I WA + +I G V I
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----SQVILMGAVEGYRIGG 178
Query: 171 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228
D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I T
Sbjct: 179 GPLGEVVDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 40/184 (21%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P WLDGSLPGDFGFDPLGL E++H RWAM GIFI + + +
Sbjct: 67 PSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAYSGV---- 122
Query: 120 TPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-- 173
W+ A G + F+ +L +++ +GW E +RW D P + + P ++
Sbjct: 123 --PWFEAGAQPGAVAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTA 179
Query: 174 -----LTGTDVGYPGGLWFDPLGWGSGSP--------EKVKELRTKEIKNGRLAMLAVMG 220
TG + GYPGG +FDPLG G + EK++ L+ EIK+ RLAMLA++
Sbjct: 180 ENFANFTG-EQGYPGGKFFDPLGLGGETKDGIYIPDTEKLERLKVAEIKHSRLAMLAMLI 238
Query: 221 AWFQ 224
+F+
Sbjct: 239 FYFE 242
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
D PG FDPLG G P +K R E+ +GR AM AV+G + Y+G
Sbjct: 71 DGSLPGDFGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVLGIFIGQAYSGV 122
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 119/267 (44%), Gaps = 55/267 (20%)
Query: 14 SSPSSQKSRSVAGATKASFLGGKKLK----LRKNGATAGTRSVSVSAAAADPNRPLW--- 66
S+ + SR VA K FLG + LR A A R + P+R +
Sbjct: 3 STIMAATSRVVA--AKTPFLGQGRAANASPLRDVAAAANGRITMSNDLWYGPDRLKYLGP 60
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113
F TP +L G PGD+G+D GL E++H RWAMLGA G PE+L
Sbjct: 61 FSAQTP-SYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQ 119
Query: 114 K--LGILNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWAD 156
K P W+ AG L+Y + + ++I +G EG R
Sbjct: 120 KWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRING 179
Query: 157 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 216
+ PG G D+ YPGG +FDPLG P EL+ KEIKNGRLAM
Sbjct: 180 L--PGVGE-----------GNDL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMF 224
Query: 217 AVMGAWFQHIYTGTGPIDNLIAHLADP 243
++ + Q I TG G ++NL+ H+ +P
Sbjct: 225 SMFRFFVQAIVTGKGSLENLLDHIDNP 251
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 108/239 (45%), Gaps = 58/239 (24%)
Query: 29 KASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPL-------WFPGSTP------PEW 75
K FLG K+ A +V V+ A P R L W P P W
Sbjct: 16 KTPFLGAKR---------ALANAVGVAGAKPAPRRALVVSAKKSWIPAFKSDAEFINPPW 66
Query: 76 LDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS 122
LDGSLPGDFGFDPLGL E++H RWAM GIF+ + + +
Sbjct: 67 LDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV------P 120
Query: 123 WYTAG---ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP------NNK 173
W+ AG E + +L +++ +GW E +RW D P + + P N
Sbjct: 121 WFEAGAQPEAIAPFSSGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFS 180
Query: 174 LTGTDVGYPGGLWFDPLGWGSGS--------PEKVKELRTKEIKNGRLAMLAVMGAWFQ 224
+ GYPGG +FDPLG G + +K+ L+ EIK+ RLAMLA++ +F+
Sbjct: 181 NATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDRLKLAEIKHARLAMLAMLIFYFE 239
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 110/253 (43%), Gaps = 79/253 (31%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHCR 97
+RP+W+PG+ P+WLDGSL GD+GFDP GL +++ R
Sbjct: 54 DRPVWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 98 WAMLGAAGI-FIP--------------------ELLTKLGILNTP-----SWYTAGELEY 131
A F P +L LG L+ +W AG++E
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL 173
Query: 132 FTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
+ +TL +E++ IG+ E +R N +L
Sbjct: 174 VDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRL 216
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG +FDPLG + PEK +L+ EIK+ RLAM+A +G Q TG GP++N HL
Sbjct: 217 YPGGKFFDPLGL-AADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 275
Query: 241 ADPGHATVFAAFT 253
+DP H T+ F+
Sbjct: 276 SDPLHTTIIDTFS 288
>gi|255070403|ref|XP_002507283.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522558|gb|ACO68541.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 247
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 111/252 (44%), Gaps = 67/252 (26%)
Query: 24 VAGATKASFLG--------GKKLKLRKNG--ATAGTRSVSVSAAAADPNRPLWFPGSTPP 73
+A T+ASF G KK+ R +G AGT W PG+ PP
Sbjct: 1 MASITQASFFGLNSVRSSATKKIARRHHGFAVRAGTH---------------WLPGTQPP 45
Query: 74 EWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNT 120
+LDG++ GD+GFDPL L E+++ RWAM AGI + +
Sbjct: 46 PYLDGTMAGDYGFDPLRLGANPDTLPYLQEAELMNGRWAMHATAGILFTD------AVGL 99
Query: 121 PSWYTAGELEYFT-DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 179
P W+ AGE + TL +++ + + E R + G
Sbjct: 100 PKWWEAGEAALGDWNLQTLVAFQVVIMAFLEAARIRGFMTTG----------------QS 143
Query: 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 239
G G FDP G S E+R KE+KNGRLAM++ +G Q+ TGT P++ L AH
Sbjct: 144 GVIGNFPFDPTGQDS------PEMRVKEVKNGRLAMMSFLGMVSQYAVTGTSPLEGLKAH 197
Query: 240 LADPGHATVFAA 251
+A+P +F +
Sbjct: 198 MANPAGVNIFTS 209
>gi|145345103|ref|XP_001417062.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144577288|gb|ABO95355.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 252
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 41/198 (20%)
Query: 65 LWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPEL 111
LW+PG+ P++LDG++ GD+GFDPL L E+++ RWAM AGI +
Sbjct: 42 LWYPGAVAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTD- 100
Query: 112 LTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN 171
+ P W+ AG ++Y D L +++ + E R +K G FP
Sbjct: 101 -----AVGLPKWWEAGAVDYGMDFQQLVGFQVVAMSILEAARTRGFMKSGESGVLNAFP- 154
Query: 172 NKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231
FDP G +P+K R KE+KN RLAM+A +G Q+ TG
Sbjct: 155 ---------------FDPAGL--DAPDK----RVKEVKNARLAMVAFLGMVSQYAVTGLS 193
Query: 232 PIDNLIAHLADPGHATVF 249
P++ L AH+A+P +F
Sbjct: 194 PLEGLEAHMANPQAVNLF 211
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 102/211 (48%), Gaps = 46/211 (21%)
Query: 46 TAGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGL-------- 91
T R + V AAAA P + W PG PEWLDGSLPGD+GFDPLGL
Sbjct: 41 TVNPRRLIVVAAAA-PKKS-WLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLK 98
Query: 92 -----EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG----ELEYFTDTTTLFIVE 142
E++H RWAM GIF+ + + + W+ AG + F+ TL +
Sbjct: 99 WYREAELIHGRWAMAAVLGIFVGQAWSGV------PWFEAGADPNAIAPFS-FGTLLGTQ 151
Query: 143 MIFIGWAEGRRWADIIKPGCVNTDPIFP------NNKLTGTDVGYPGGLWFDPLGWGSG- 195
+I +GW E +RW D P + + P N + GYPGG +FDPL +
Sbjct: 152 LILMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANASGEHGYPGGKFFDPLSFAGTI 211
Query: 196 -------SPEKVKELRTKEIKNGRLAMLAVM 219
EK++ L+ EIK+ R+AMLA++
Sbjct: 212 KDGVYIPDTEKLERLKLAEIKHARIAMLAML 242
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 112/254 (44%), Gaps = 80/254 (31%)
Query: 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHC 96
P+RPLW+PG+ PE+LDGSL GD+GFDP GL +++
Sbjct: 46 PDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGT 105
Query: 97 RWAMLGAAGI-FIP--------------------ELLTKLGILNTP-----SWYTAGELE 130
R + F P +L LG L +W AG++E
Sbjct: 106 RTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVE 165
Query: 131 YFTDT-----------TTLFIVEMIFIGW-AEGRRWADIIKPGCVNTDPIFPNNKLTGTD 178
+ TTL +E++ IG+ E +R A++ P +L
Sbjct: 166 LVEGSSYLGQPLPFSITTLIWIEVLVIGYIVEFQRNAELD-----------PEKRL---- 210
Query: 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIA 238
YPGG +FDPLG + PEK L+ EIK+ RLAM+A +G Q TG GP++N
Sbjct: 211 --YPGGSFFDPLGL-AADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 267
Query: 239 HLADPGHATVFAAF 252
HL+DP H T+F F
Sbjct: 268 HLSDPLHTTIFDTF 281
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 94/204 (46%), Gaps = 50/204 (24%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLG 102
P+R ++ P S PE+L G +PGD+G+DP GL E++H RWAMLG
Sbjct: 75 PDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLG 134
Query: 103 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGW 148
AAG IPE K G P W+ G L +T F + E+I +G
Sbjct: 135 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGG 194
Query: 149 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 208
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 195 AEYFRI----------------TNGLGFDDKLHPGG-PFDPLGLAK-DPDQAALLKVKEI 236
Query: 209 KNGRLAMLAVMGAWFQHIYTGTGP 232
KNGRLAM A++G + Q TG P
Sbjct: 237 KNGRLAMFAMLGFFLQAYVTGDVP 260
>gi|388506818|gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 38/183 (20%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
PEWLDGSLPGDFGFDPLGL E++H RWAM GIF+ + + +
Sbjct: 72 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV---- 127
Query: 120 TPSWYTAG----ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 175
W+ AG + F+ +L ++I +GW E +RW D P + + P +K
Sbjct: 128 --PWFEAGADPNAIAPFS-FGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTA 184
Query: 176 GT------DVGYPGGLWFDPLGWGSG--------SPEKVKELRTKEIKNGRLAMLAVMGA 221
D GYPGG +FDPL EK++ L+ EIK+ RLAMLA++
Sbjct: 185 ENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLAMLIF 244
Query: 222 WFQ 224
+F+
Sbjct: 245 YFE 247
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 152 RRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 211
+ W +K G DP + + L PG FDPLG G P +K R E+ +G
Sbjct: 57 KSWIPAVKGGGNLVDPEWLDGSL-------PGDFGFDPLGLGK-DPAFLKWYREAELIHG 108
Query: 212 RLAMLAVMGAWFQHIYTGT 230
R AM AV+G + ++G
Sbjct: 109 RWAMAAVLGIFVGQAWSGV 127
>gi|168040609|ref|XP_001772786.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168040679|ref|XP_001772821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675863|gb|EDQ62353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675898|gb|EDQ62388.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 112/253 (44%), Gaps = 80/253 (31%)
Query: 63 RPLWFPGSTPPEWLDGSLPGDFGFDPLGL----EIVHCRWAMLGA------AGIFIPELL 112
RPLWFPG+ PEWLDGSLPGD+GFDPL L E + L AG I +
Sbjct: 61 RPLWFPGAQAPEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRI 120
Query: 113 TK------------------------------------LGILNTP-----SWYTAGELE- 130
+K LG L+ +W AG++E
Sbjct: 121 SKKEEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGALSVEAFTGVTWQDAGKVEL 180
Query: 131 -----YF-----TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
YF T+L +E +G+ E +R A++ P +L
Sbjct: 181 VDGASYFGLPLPFSITSLVYIEAFLVGFIEFQRNAELD-----------PEKRL------ 223
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG +FDPL + + +K + L+ EIK+ RLAM+A +G Q TG GP+DN HL
Sbjct: 224 YPGGKFFDPLNFAD-TEDKKETLKLAEIKHARLAMVAALGFAAQAAATGKGPLDNWATHL 282
Query: 241 ADPGHATVFAAFT 253
ADP H T+F F+
Sbjct: 283 ADPLHTTIFDTFS 295
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 102/219 (46%), Gaps = 50/219 (22%)
Query: 51 SVSVSAAAADPNRPLWF-PGSTP---PEWLDGSLPGDFGFDPLGL-------------EI 93
S A PNRPLW P ++P PE+L G PGD+G D L E+
Sbjct: 6 SQDTRTAYYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAKLRSQEL 65
Query: 94 VHCRWAMLGAAGIFIPELLTKLGILN-TPSWYTAGE-------LEY-----FTDTTTL-- 138
++ RWAMLG G +PEL+ P W+ G ++Y F + +L
Sbjct: 66 MNGRWAMLGITGCLVPELINSNPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFINAHSLVA 125
Query: 139 -FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 197
+V+ + +G AE R + P G D YPGG FDPLG+ S P
Sbjct: 126 VIVVQALLMGVAEYAR---------IKLSP-------EGNDAFYPGGKAFDPLGFSS-DP 168
Query: 198 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 236
E EL+ KEIKNGRLAM+A+ G + Q TG P+ NL
Sbjct: 169 ESFAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNL 207
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 101/209 (48%), Gaps = 30/209 (14%)
Query: 61 PNRPLWFPG------STPPEWLDGSLPGDFGFDPLGL------------EIVHCRWAMLG 102
PNR L+ P + P +LDGSL GD+GFDPL L E++H RWAML
Sbjct: 87 PNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKDGKVEQYRAAEVIHARWAMLA 146
Query: 103 AAGIFIPELLTKLGILNTPSWYT-----AGELEYFTDTTTLFIVEMIFIGWAEGRRWADI 157
GI IPE L G + T + AG E + +++ EG R
Sbjct: 147 IPGIVIPEALGIPGGVWTETGKVFLDGEAGRPEILQNPYLFAAIQIGLFAAVEGYRAGKA 206
Query: 158 IKP-GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW--GSGSPEKVKELRTKEIKNGRLA 214
P G V F + +G D PGG PL + + +P+ + L+ KEIKNGRLA
Sbjct: 207 PAPDGFVPFKGKFSGSDFSGLDPINPGG----PLDFFNVAATPDDLAVLKVKEIKNGRLA 262
Query: 215 MLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
M+A++G + Q + TG GP N H+ADP
Sbjct: 263 MIAMLGVFVQGLTTGEGPAANWGKHVADP 291
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 96/217 (44%), Gaps = 50/217 (23%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTK---LG 116
P G PGD+G+D GL E++H R +LGA G+ PELL +
Sbjct: 73 PRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIK 132
Query: 117 ILNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPG 161
+ W+ AG L + + V+++ +G EG R P
Sbjct: 133 FGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPA 190
Query: 162 CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGA 221
DP++P G FDPLG P+ EL+ KEIKNGRLAM A +G
Sbjct: 191 GEGLDPLYP-------------GEAFDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGF 236
Query: 222 WFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTPK 255
+ Q I TG GPI+NL HLA+P FA FTP+
Sbjct: 237 FVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTPQ 273
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 96/198 (48%), Gaps = 45/198 (22%)
Query: 76 LDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN--T 120
L G PGD+G+D GL E++H RWAMLGA G PE+L K ++
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 121 PSWYTAGE-------LEYFTD--------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNT 165
P W+ AG L+Y + + +++ +G EG R + PG
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGVGEG 118
Query: 166 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 225
+ + YPGG +FDPLG P EL+ KEIKNGRLAM ++ G + Q
Sbjct: 119 NNL------------YPGGQYFDPLGLAD-DPTTFAELKVKEIKNGRLAMFSMFGFFVQA 165
Query: 226 IYTGTGPIDNLIAHLADP 243
I TG GP++NL+ HL +P
Sbjct: 166 IVTGKGPLENLLDHLDNP 183
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 109/248 (43%), Gaps = 79/248 (31%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------EIVHCR 97
+RPLWFPG+ PEWLDG+L GD+GFDP GL +++ R
Sbjct: 52 DRPLWFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTR 111
Query: 98 W--------------AMLGAAGIFIPEL-------LTKLGILNTPS-----WYTAGELEY 131
+ + G EL L LG L S W AG++E
Sbjct: 112 FEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVEL 171
Query: 132 FTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG 180
+ TTL +E++ IG+ E +R A++ P +L
Sbjct: 172 IEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELD-----------PEKRL------ 214
Query: 181 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 240
YPGG +FDPLG + PEK L+ EIK+ RLAM+ +G Q TG GP++N HL
Sbjct: 215 YPGGKFFDPLGL-AADPEKKAVLQLAEIKHARLAMIGFLGFAVQAAVTGKGPLNNWATHL 273
Query: 241 ADPGHATV 248
+DP H T+
Sbjct: 274 SDPLHTTI 281
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 103/228 (45%), Gaps = 45/228 (19%)
Query: 34 GGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-- 91
G K +RK+ T S D + L PP +L G PGD+G+D GL
Sbjct: 1 GASKFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 92 -----------EIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYF 132
E++H RWAMLGA G PELL + G+ W+ AG L+Y
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 133 TDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 184
+ + ++ V++I +G EG R A P DP+ YPGG
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPLGEVVDPL------------YPGG 166
Query: 185 LWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232
FDPLG PE EL+ KE+KNGRLAM ++ G + Q I TG GP
Sbjct: 167 S-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 109/240 (45%), Gaps = 58/240 (24%)
Query: 21 SRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGST-PPEWLDGS 79
+RS ++A+F+ +K+ S++V A R LW ST P LDG+
Sbjct: 18 ARSAFAGSRAAFVAAPAMKVSSRA------SLTVKA-----QRELWIKDSTVAPAHLDGT 66
Query: 80 LPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA 126
LPGDFGFDPLGL E+++ RWAM+ AGI E+L GI P+WY
Sbjct: 67 LPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAGITATEVL---GI--GPAWYDV 121
Query: 127 GELEYFTDTTTLFIVEMIFIGWAEGRR---WADIIKPGCVNTDPIFPNNKLTGTDVGYPG 183
G ++ L ++ +G E +R W D K G V+ P
Sbjct: 122 GAADFDFPPLALLAIQFPVMGILELKRIRGWLDTGKSGVVDQFP---------------- 165
Query: 184 GLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 243
+DP+G S + KEIKNGRLAM+A +G Q I GP+ L H+ DP
Sbjct: 166 ---WDPMGMNSDG------MAVKEIKNGRLAMIAFVGIVVQAIVYREGPVAALKDHVTDP 216
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 38/183 (20%)
Query: 73 PEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILN 119
P WLDGSLPGDFGFDPLGL E++H RWAM GIF+ + + +
Sbjct: 68 PSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAYSGV---- 123
Query: 120 TPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP----- 170
W+ A G + F+ +L +++ +GW E +RW D P + P
Sbjct: 124 --PWFEAGAQPGAVAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTA 180
Query: 171 -NNKLTGTDVGYPGGLWFDPLGWGSGSP--------EKVKELRTKEIKNGRLAMLAVMGA 221
N + D GYPGG +FDPLG G + +K++ L+ EIK+ RLAMLA++
Sbjct: 181 DNFANSTGDQGYPGGKFFDPLGLGGDTKDGVYIPDTDKLERLKLAEIKHARLAMLAMLIF 240
Query: 222 WFQ 224
+F+
Sbjct: 241 YFE 243
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230
D PG FDPLG G P +K R E+ +GR AM AV+G + Y+G
Sbjct: 72 DGSLPGDFGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVLGIFVGQAYSGV 123
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 105/233 (45%), Gaps = 46/233 (19%)
Query: 29 KASFLGGKKLKLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDP 88
+A G+KL T G S R +W PGSTPP L G+LP D+GFDP
Sbjct: 13 RAGSFAGRKLATNATNGTVGKVSA----------RAVWMPGSTPPAHLTGTLPCDYGFDP 62
Query: 89 LGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL--EYFT 133
LGL EI+H RWAMLG AG E +T + + P + L E
Sbjct: 63 LGLGKEPANLARFQEAEIIHSRWAMLGVAGAAGQEAITGVTWIEAPVQDSQTYLGAESPF 122
Query: 134 DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193
+ +E+ + + E +R ++ P +L YPGG FDP G+
Sbjct: 123 PLPVVVAIEVFVMAFVEQQR-----------SNEKDPAKRL------YPGGA-FDPAGFS 164
Query: 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG-TGPIDNLIAHLADPGH 245
G+ + L+ KEI NGR+AMLA G Q T GP+ L H+ADP H
Sbjct: 165 KGA--DFETLKKKEIANGRVAMLAFAGLIGQAQATNLEGPLSALGRHVADPWH 215
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,711,086,116
Number of Sequences: 23463169
Number of extensions: 221918444
Number of successful extensions: 463139
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 215
Number of HSP's that attempted gapping in prelim test: 456145
Number of HSP's gapped (non-prelim): 2780
length of query: 255
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 116
effective length of database: 9,097,814,876
effective search space: 1055346525616
effective search space used: 1055346525616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)