Query 025246
Match_columns 255
No_of_seqs 229 out of 1190
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00098 light-harvesting comp 100.0 2E-71 4.3E-76 502.4 18.0 204 52-255 51-267 (267)
2 PLN00101 Photosystem I light-h 100.0 2E-69 4.4E-74 485.4 16.0 193 55-253 45-250 (250)
3 PLN00097 photosystem I light h 100.0 1.4E-68 3.1E-73 478.2 16.1 193 55-249 36-243 (244)
4 PLN00048 photosystem I light h 100.0 6.6E-68 1.4E-72 479.0 14.1 210 45-255 24-262 (262)
5 PLN00147 light-harvesting comp 100.0 1.7E-64 3.7E-69 454.3 15.4 198 56-254 38-251 (252)
6 PLN00187 photosystem II light- 100.0 2.6E-63 5.7E-68 452.6 14.5 175 55-253 44-285 (286)
7 PLN00025 photosystem II light 100.0 3.6E-62 7.8E-67 441.1 14.7 183 54-252 42-255 (262)
8 PLN00171 photosystem light-ha 100.0 1E-60 2.2E-65 440.4 13.7 192 53-253 98-323 (324)
9 PLN00100 light-harvesting comp 100.0 8E-60 1.7E-64 421.7 13.1 167 58-252 30-209 (246)
10 PLN00099 light-harvesting comp 100.0 5.7E-59 1.2E-63 416.9 15.3 169 61-254 42-238 (243)
11 PLN00170 photosystem II light- 100.0 6.3E-55 1.4E-59 392.2 12.9 178 53-237 41-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 6.2E-41 1.4E-45 281.3 10.6 139 72-226 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 3E-40 6.5E-45 290.8 10.2 149 66-234 40-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 7E-32 1.5E-36 236.7 9.3 130 86-233 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 1.9E-16 4E-21 144.3 5.1 57 178-235 76-132 (267)
16 PLN00101 Photosystem I light-h 99.6 4.1E-16 9E-21 140.8 4.9 55 178-233 67-121 (250)
17 PLN00170 photosystem II light- 99.6 7.5E-16 1.6E-20 139.4 6.0 73 153-233 53-125 (255)
18 PLN00147 light-harvesting comp 99.6 2.5E-15 5.4E-20 136.0 4.8 54 177-231 58-111 (252)
19 PLN00171 photosystem light-ha 99.5 9.4E-15 2E-19 135.8 4.6 55 177-232 123-177 (324)
20 PLN00097 photosystem I light h 99.5 1.6E-14 3.5E-19 130.1 4.7 54 178-232 58-111 (244)
21 PLN00025 photosystem II light 99.5 2.2E-14 4.7E-19 130.5 4.7 53 178-231 67-119 (262)
22 PLN00100 light-harvesting comp 99.5 2.9E-14 6.4E-19 128.4 4.4 51 177-228 48-98 (246)
23 PLN00089 fucoxanthin-chlorophy 99.4 9.1E-14 2E-18 122.9 5.3 50 182-231 54-103 (209)
24 PLN00048 photosystem I light h 99.4 5.9E-14 1.3E-18 127.7 4.2 56 178-235 56-117 (262)
25 PLN00099 light-harvesting comp 99.4 8.6E-14 1.9E-18 125.5 4.1 52 177-229 57-108 (243)
26 PLN00187 photosystem II light- 99.4 1.5E-13 3.3E-18 126.2 4.2 52 178-230 66-160 (286)
27 PF00504 Chloroa_b-bind: Chlor 99.3 7.9E-13 1.7E-17 111.0 5.1 51 179-231 7-57 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 1.9E-11 4.1E-16 107.7 2.4 45 181-226 42-87 (202)
29 PHA02337 putative high light i 98.2 1.1E-06 2.3E-11 56.9 2.7 28 205-232 4-31 (35)
30 PLN00084 photosystem II subuni 98.1 1.6E-06 3.4E-11 74.6 3.2 46 198-243 130-176 (214)
31 PLN00014 light-harvesting-like 97.7 3.3E-05 7.1E-10 69.3 3.1 36 203-238 159-194 (250)
32 PHA02337 putative high light i 96.9 0.00027 5.8E-09 45.8 0.5 25 92-116 6-30 (35)
33 PLN00014 light-harvesting-like 95.6 0.0042 9.1E-08 56.0 0.9 27 92-118 163-189 (250)
34 PLN00084 photosystem II subuni 94.0 0.034 7.3E-07 48.3 2.1 27 92-118 139-166 (214)
35 KOG0742 AAA+-type ATPase [Post 55.0 7.7 0.00017 38.8 1.9 28 84-111 71-106 (630)
36 PLN02449 ferrochelatase 52.4 9.3 0.0002 38.3 2.1 21 213-233 463-483 (485)
37 KOG0986 G protein-coupled rece 28.8 19 0.00041 36.4 0.0 36 92-130 341-376 (591)
38 COG4721 ABC-type cobalt transp 28.7 15 0.00032 32.2 -0.7 24 85-108 37-65 (192)
39 PF01524 Gemini_V1: Geminiviru 21.4 43 0.00093 25.6 0.7 18 86-103 2-22 (78)
No 1
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=2e-71 Score=502.44 Aligned_cols=204 Identities=68% Similarity=1.309 Sum_probs=189.0
Q ss_pred ccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCC
Q 025246 52 VSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGIL 118 (255)
Q Consensus 52 ~~~~~~~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~ 118 (255)
++.++.+|+++|++|||+.++|+||||++||||||||||| |||||||||||++|+++||+++..|++
T Consensus 51 ~~~~~~~~~~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~ 130 (267)
T PLN00098 51 VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI 130 (267)
T ss_pred cccccccCCCCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence 4456677899999999999999999999999999999999 999999999999999999999988888
Q ss_pred CCCcccccCccccccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChh
Q 025246 119 NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 198 (255)
Q Consensus 119 ~~~~w~~aG~~~~~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe 198 (255)
..+.||++|..+|+.++.+++++|+++||++|.+||+++.++|+++.++.+++......|.+||||++||||||.++|++
T Consensus 131 ~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~ 210 (267)
T PLN00098 131 ENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPE 210 (267)
T ss_pred cccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHH
Confidence 77789999988888888889999999999999999999999999888887766554555678999999999999877999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeecccCC
Q 025246 199 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255 (255)
Q Consensus 199 ~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~~~ 255 (255)
+++++|+||||||||||+|++||++|+.+||++|++||.+||+||+|+||++++++|
T Consensus 211 ~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 267 (267)
T PLN00098 211 PVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTSH 267 (267)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccCC
Confidence 999999999999999999999999999999999999999999999999999999875
No 2
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2e-69 Score=485.43 Aligned_cols=193 Identities=51% Similarity=1.021 Sum_probs=177.5
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCCCCC
Q 025246 55 SAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTP 121 (255)
Q Consensus 55 ~~~~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~ 121 (255)
.+.++.++|++|+|+.++|+||||++||||||||||| ||+||||||||++|+++||+++..|++..+
T Consensus 45 ~~~~~~~~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p 124 (250)
T PLN00101 45 RSFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAP 124 (250)
T ss_pred ccccccccccccCCCCCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 3456678999999999999999999999999999999 999999999999999999999998888778
Q ss_pred cccccCccccccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhh
Q 025246 122 SWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVK 201 (255)
Q Consensus 122 ~w~~aG~~~~~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~ 201 (255)
.||++|...|++...+++++|+++||++|.+||+++.+||+++.++.|.+......|.+||||. ||||||++ + +
T Consensus 125 ~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~-FDPLgl~~-~----~ 198 (250)
T PLN00101 125 QWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAP-T----E 198 (250)
T ss_pred ccccccchhhcccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCCc-cCccCCCc-c----H
Confidence 8999999889888889999999999999999999999999998888876444455678899998 99999974 4 3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeeccc
Q 025246 202 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253 (255)
Q Consensus 202 ~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~ 253 (255)
++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++|+.
T Consensus 199 ~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 199 EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred HHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 8999999999999999999999999999999999999999999999999873
No 3
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=1.4e-68 Score=478.16 Aligned_cols=193 Identities=55% Similarity=1.036 Sum_probs=177.2
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCCCCC
Q 025246 55 SAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTP 121 (255)
Q Consensus 55 ~~~~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~ 121 (255)
+++.++++|++|||+.++|+||||++||||||||||| ||+||||||||++||++||+++..|+...+
T Consensus 36 ~~~~~~~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p 115 (244)
T PLN00097 36 GAVAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLP 115 (244)
T ss_pred eecccCCCCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCC
Confidence 3445668999999999999999999999999999999 999999999999999999999988876667
Q ss_pred cccccCccc-cccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCC-CCCCCCCCCCCcccCCCCCCCCChhh
Q 025246 122 SWYTAGELE-YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGTDVGYPGGLWFDPLGWGSGSPEK 199 (255)
Q Consensus 122 ~w~~aG~~~-~~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~-~~~~d~~yPGg~gFDPLgl~~~dpe~ 199 (255)
.||++|... |+.+..+++.+|+++|+|+|.+||+++++||+++.+++|+.++ ....|.+|||+. ||||||. +|+++
T Consensus 116 ~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~-FDPlgl~-~d~~~ 193 (244)
T PLN00097 116 NWIDAAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGL-FDKFGWA-KDEKK 193 (244)
T ss_pred ccccCCcchhccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCC-CCccccC-CCHHH
Confidence 899999876 7777788999999999999999999999999999888887654 234577899998 9999998 59999
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCccccee
Q 025246 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 249 (255)
Q Consensus 200 ~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~ 249 (255)
++++|+||||||||||+|++||++|+++||+||++||.+||+||+|||||
T Consensus 194 ~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 194 AAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 99999999999999999999999999999999999999999999999997
No 4
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=6.6e-68 Score=478.98 Aligned_cols=210 Identities=44% Similarity=0.836 Sum_probs=185.0
Q ss_pred CCCCcccccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc------------------eeecccchhhhhhhh
Q 025246 45 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGI 106 (255)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL------------------ElkHGR~AMLA~vG~ 106 (255)
++.++|+..+.+++++++|++|+|+.++|+||||++||||||||||| ||+||||||||++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~ 103 (262)
T PLN00048 24 ARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGA 103 (262)
T ss_pred cceeEecccCCCCCCCCCCceecCCCCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhH
Confidence 34456665666678889999999999999999999999999999998 999999999999999
Q ss_pred hhhhhhhccCCCCC---CcccccCc------cccccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCC-CC
Q 025246 107 FIPELLTKLGILNT---PSWYTAGE------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TG 176 (255)
Q Consensus 107 lv~E~l~~~G~~~~---~~w~~aG~------~~~~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~-~~ 176 (255)
++||++++.|++.. ..||++|. ..|+..+.+++++|+++||++|.+||+++.+||+++.+.+++.++. .+
T Consensus 104 lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~ 183 (262)
T PLN00048 104 IAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGG 183 (262)
T ss_pred HHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchhcccc
Confidence 99999998887643 24999874 3577777788999999999999999999999999887766554332 22
Q ss_pred -CCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeecccCC
Q 025246 177 -TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255 (255)
Q Consensus 177 -~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~~~ 255 (255)
.|..||||++||||||.+ |+|+++++|++|||||||||+|++||++|+++||+||++||.+||+||+||||++|++.|
T Consensus 184 ~~d~~yPG~~~fDPlGl~~-~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~~ 262 (262)
T PLN00048 184 SGNPAYPGGPFFNPLGFGK-DEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKFH 262 (262)
T ss_pred ccccccccccccCcccccc-chHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccccccccccccC
Confidence 266899999999999984 899999999999999999999999999999999999999999999999999999999865
No 5
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.7e-64 Score=454.28 Aligned_cols=198 Identities=47% Similarity=0.918 Sum_probs=176.8
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCCCCCc
Q 025246 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPS 122 (255)
Q Consensus 56 ~~~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~ 122 (255)
+..++++|++|+|+.++|+||||++||||||||||| |||||||||||++|+++||+++..|++..+.
T Consensus 38 ~~~~~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~ 117 (252)
T PLN00147 38 NPVVAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPV 117 (252)
T ss_pred cccCCCCccccCCCCCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcc
Confidence 346778999999999999999999999999999999 9999999999999999999999888776778
Q ss_pred ccccCcccc-ccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCC-CC-CCCCCCCCCCCcccCCCCCCCCChhh
Q 025246 123 WYTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN-NK-LTGTDVGYPGGLWFDPLGWGSGSPEK 199 (255)
Q Consensus 123 w~~aG~~~~-~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~-~~-~~~~d~~yPGg~gFDPLgl~~~dpe~ 199 (255)
|+++|...+ +.+.++++++|+++||++|.+||.++.+||+...+..|.. +. ..+.+++||||++||||||. +|+++
T Consensus 118 w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~-~d~~~ 196 (252)
T PLN00147 118 WYEAGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLA-KDIEN 196 (252)
T ss_pred hhhcccchhccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccccC-CCHHH
Confidence 999886543 5566788999999999999999999999998776554432 22 34456789999999999998 59999
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeecccC
Q 025246 200 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTP 254 (255)
Q Consensus 200 ~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~~ 254 (255)
++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||+++++.
T Consensus 197 ~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 197 AHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999864
No 6
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.6e-63 Score=452.61 Aligned_cols=175 Identities=48% Similarity=0.918 Sum_probs=153.7
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------------------------------------
Q 025246 55 SAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------------------------------- 91 (255)
Q Consensus 55 ~~~~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL------------------------------------------- 91 (255)
.+.++++||++|||+.++|+|||||||||||||||||
T Consensus 44 ~~~~~~~~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 123 (286)
T PLN00187 44 KSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQP 123 (286)
T ss_pred CccCCCCCccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCc
Confidence 3457899999999999999999999999999999998
Q ss_pred -------------eeecccchhhhhhhhhhhhhhhccCCCCCCcccccCccc------cccc-----hhhHHHHHHHHHH
Q 025246 92 -------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELE------YFTD-----TTTLFIVEMIFIG 147 (255)
Q Consensus 92 -------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~w~~aG~~~------~~a~-----~~~l~~~qi~l~g 147 (255)
|||||||||||++||++||+++ |+ .|+++|... |+.. .++++++|+++||
T Consensus 124 ~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~----~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG 197 (286)
T PLN00187 124 YSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV----TWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIG 197 (286)
T ss_pred chhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC----cccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 8999999999999999999985 22 488877532 3332 2567899999999
Q ss_pred HHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhc
Q 025246 148 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY 227 (255)
Q Consensus 148 ~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~v 227 (255)
++|.+|+.+. ...+..||||++||||||. +|+++++++|++|||||||||+|++||++|+++
T Consensus 198 ~~E~~R~~~~-----------------~~~~~~yPGg~~FDPlGl~-~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~v 259 (286)
T PLN00187 198 YIEFQRNAEL-----------------DPEKRLYPGGKFFDPLGLA-ADPEKKETLQLAEIKHARLAMVAFLGFAVQAAA 259 (286)
T ss_pred HHHhhhccCC-----------------CCCCCCCCccccccccccC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 9999997541 1124569999889999998 599999999999999999999999999999999
Q ss_pred ccCCchhHHHHhhcCCcccceeeccc
Q 025246 228 TGTGPIDNLIAHLADPGHATVFAAFT 253 (255)
Q Consensus 228 TG~gPlenL~~hladP~~~n~~~~~~ 253 (255)
||+||++||.+||+||+||||++++.
T Consensus 260 tg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 260 TGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred cCCChHHHHHHHhcCcccccHHHhcc
Confidence 99999999999999999999999975
No 7
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=3.6e-62 Score=441.11 Aligned_cols=183 Identities=44% Similarity=0.840 Sum_probs=158.8
Q ss_pred ccCCcCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCC-
Q 025246 54 VSAAAADPNRPLWF-PGS-TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI- 117 (255)
Q Consensus 54 ~~~~~~~~~r~~w~-p~~-~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~- 117 (255)
+.+.||++||++|| |++ ++|+||||++||||||||||| |||||||||||++||++||+++..|+
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~ 121 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVK 121 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcC
Confidence 35678999999999 665 799999999999999999999 99999999999999999999988776
Q ss_pred CCCCcccccCc-------cccccch--------hhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCC
Q 025246 118 LNTPSWYTAGE-------LEYFTDT--------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYP 182 (255)
Q Consensus 118 ~~~~~w~~aG~-------~~~~a~~--------~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yP 182 (255)
+.++.||++|. .+|+..+ .+++++|+++||++|.+|+.+. + + ....|+.||
T Consensus 122 ~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~--~----------~~~~d~~yP 187 (262)
T PLN00025 122 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--P--L----------GEGLDPLYP 187 (262)
T ss_pred cCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--c--c----------cccccCcCC
Confidence 56678999875 2454432 4567789999999999998651 1 1 012356799
Q ss_pred CCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeecc
Q 025246 183 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252 (255)
Q Consensus 183 Gg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~ 252 (255)
||+ ||||||. +|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||+++.
T Consensus 188 G~~-FDPlGl~-~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~ 255 (262)
T PLN00025 188 GGS-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYA 255 (262)
T ss_pred ccc-CCccccC-CCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhh
Confidence 999 9999998 5999999999999999999999999999999999999999999999999999999864
No 8
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1e-60 Score=440.43 Aligned_cols=192 Identities=39% Similarity=0.711 Sum_probs=162.8
Q ss_pred cccCCcCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCC
Q 025246 53 SVSAAAADPNRPLWFPGS--TPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117 (255)
Q Consensus 53 ~~~~~~~~~~r~~w~p~~--~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~ 117 (255)
+..+.||+++|++|||.. ++|+||||++||||||||||| |||||||||||++|+++||++++.|.
T Consensus 98 ~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 98 RNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred cccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 455789999999999765 799999999999999999999 99999999999999999999988764
Q ss_pred --CCCCcccccCcc-------ccccc----------hhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCC
Q 025246 118 --LNTPSWYTAGEL-------EYFTD----------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTD 178 (255)
Q Consensus 118 --~~~~~w~~aG~~-------~~~a~----------~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d 178 (255)
+..+.||++|.. +|+.. ..+++++|+++|+++|++|++++.+++..+ .+ ..+|
T Consensus 178 ~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g-------~~-~PGD 249 (324)
T PLN00171 178 VHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG-------IY-LPGD 249 (324)
T ss_pred cccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc-------cc-CCCc
Confidence 345789998742 22221 134678899999999999998754432211 11 1236
Q ss_pred CCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeeccc
Q 025246 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253 (255)
Q Consensus 179 ~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~ 253 (255)
.+||||.+||||||. +|+++++++|++|||||||||+|++||++|+.+||++|++||.+||+||+||||+++|+
T Consensus 250 ~gYPGG~~FDPLGl~-~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 250 INYPGGALFDPLGLS-KDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred ccCCcccCCCccccC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 679999889999998 59999999999999999999999999999999999999999999999999999999985
No 9
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=8e-60 Score=421.65 Aligned_cols=167 Identities=41% Similarity=0.808 Sum_probs=148.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCCCCCccc
Q 025246 58 AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY 124 (255)
Q Consensus 58 ~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~w~ 124 (255)
....+|++|+|+.++|+||||++||||||||||| |||||||||||++|+++||+++. +.|+
T Consensus 30 ~~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~------P~w~ 103 (246)
T PLN00100 30 VAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL------PKFW 103 (246)
T ss_pred cccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc------cchh
Confidence 4457999999999999999999999999999999 99999999999999999999763 3588
Q ss_pred ccCccccccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhhhhh
Q 025246 125 TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 204 (255)
Q Consensus 125 ~aG~~~~~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~~~k 204 (255)
++|...|..+.++++++|+++||++|.+||+++.++| +.++||+++||||||.+ +++|
T Consensus 104 ~ag~~~~~~~~~~l~~iqill~g~~E~~r~~~~~~~g----------------~~~~pg~~~FDPLGl~~------~~~K 161 (246)
T PLN00100 104 EAGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTG----------------ESGVLSFFPFDPTGMDS------PEMK 161 (246)
T ss_pred hcchhhhccchhHHHHHHHHHHHHHhhhccccccccc----------------ccCCCCCCCCCcccccH------HHHH
Confidence 8887766666788899999999999999988754332 23468888999999952 5799
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeecc
Q 025246 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 252 (255)
Q Consensus 205 ~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~ 252 (255)
+||||||||||+||+||++|+++||+||++||.+|++||+|+||+++.
T Consensus 162 ~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 162 VKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 999999999999999999999999999999999999999999999864
No 10
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=5.7e-59 Score=416.86 Aligned_cols=169 Identities=46% Similarity=0.876 Sum_probs=143.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCCCCCcccccC
Q 025246 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG 127 (255)
Q Consensus 61 ~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~w~~aG 127 (255)
++|..|+|+.++|+||||++||||||||||| |||||||||||++||++||+++.. .|++++
T Consensus 42 ~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~------~w~~a~ 115 (243)
T PLN00099 42 TMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLG------NWVKAQ 115 (243)
T ss_pred cccccccCCCCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccC------Cccccc
Confidence 6788999999999999999999999999999 999999999999999999997652 354433
Q ss_pred --------ccccc------cchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 025246 128 --------ELEYF------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 193 (255)
Q Consensus 128 --------~~~~~------a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~ 193 (255)
...|+ ...++++++|+++||++|.+|+... + ..+..|||| .||||||.
T Consensus 116 ~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~---~--------------~~~~~yPGd-~FDPlGl~ 177 (243)
T PLN00099 116 EWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK---D--------------PEKKKYPGG-AFDPLGYS 177 (243)
T ss_pred chhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC---C--------------CCCCcCCCC-cCCccccc
Confidence 22232 2346788899999999998875320 0 113469999 59999998
Q ss_pred CCChhhhhhhhhhhhhhhhHHHHHHHHHHHhh-hcccCCchhHHHHhhcCCcccceeecccC
Q 025246 194 SGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTP 254 (255)
Q Consensus 194 ~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~-~vTG~gPlenL~~hladP~~~n~~~~~~~ 254 (255)
+|+++++++|+|||||||||||||+||++|+ ++||++|++||.+||+||+|+||++.+..
T Consensus 178 -kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 178 -KDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred -CCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 5999999999999999999999999999998 67999999999999999999999998743
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=6.3e-55 Score=392.20 Aligned_cols=178 Identities=39% Similarity=0.761 Sum_probs=151.3
Q ss_pred cccCCcCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhh
Q 025246 53 SVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113 (255)
Q Consensus 53 ~~~~~~~~~~r~~w~p~~~------~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~ 113 (255)
+.++.....+|+.|+|+.. +|+||||++||||||||+|| ||+||||||||++||++||+++
T Consensus 41 ~~v~~~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~ 120 (255)
T PLN00170 41 LLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120 (255)
T ss_pred eEEEEeccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc
Confidence 3344455678999999874 79999999999999999999 9999999999999999999986
Q ss_pred ccCCCCCCcccccCcccccc---chhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCC------CCCCCCCCCCC
Q 025246 114 KLGILNTPSWYTAGELEYFT---DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK------LTGTDVGYPGG 184 (255)
Q Consensus 114 ~~G~~~~~~w~~aG~~~~~a---~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~------~~~~d~~yPGg 184 (255)
. ..||++|...++. ...+++.+|+++||++|.+||+++.+||++..++.++... ....+.+||||
T Consensus 121 g------~~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG 194 (255)
T PLN00170 121 G------IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGG 194 (255)
T ss_pred C------CChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccCCC
Confidence 3 2599988754322 2356888999999999999999999999988887765422 12346789999
Q ss_pred cccCCCCCCCC--------ChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHH
Q 025246 185 LWFDPLGWGSG--------SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 237 (255)
Q Consensus 185 ~gFDPLgl~~~--------dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~ 237 (255)
..||||||.++ |+++++++|+||||||||||+|++||++|+ .||++||+||.
T Consensus 195 ~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 195 KFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 88999999852 889999999999999999999999999999 79999999983
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=6.2e-41 Score=281.34 Aligned_cols=139 Identities=45% Similarity=0.712 Sum_probs=111.2
Q ss_pred CCCCCCCCCCCCCCCCCCCc------------eeecccchhhhhhhhhhhhhhhccCC----CCCCcccccCccccccch
Q 025246 72 PPEWLDGSLPGDFGFDPLGL------------EIVHCRWAMLGAAGIFIPELLTKLGI----LNTPSWYTAGELEYFTDT 135 (255)
Q Consensus 72 ~P~~LdGslpGD~GFDPLGL------------ElkHGR~AMLA~vG~lv~E~l~~~G~----~~~~~w~~aG~~~~~a~~ 135 (255)
+|+|||||++|||||||+|| |||||||||||++|++++|+++..+. ...+.|++++. + ..
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~---~-~~ 76 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG---I-PV 76 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS---S-SS
T ss_pred CcccccCCCCCCCCCChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh---h-hh
Confidence 69999999999999999999 99999999999999999999865432 33455776542 1 25
Q ss_pred hhHHHHHH-HHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHH
Q 025246 136 TTLFIVEM-IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLA 214 (255)
Q Consensus 136 ~~l~~~qi-~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLA 214 (255)
+..+++|+ +++|++|.++.++...++.. ...+..|||+++|||+|+. +|+++++++|++||||||||
T Consensus 77 ~~~~~~~~l~~ig~~e~~~~~~~~~~~~~-----------~~~~~~~pG~~~~dplgl~-~~~~~~~~~~~~El~NGRlA 144 (156)
T PF00504_consen 77 PAAGWAQILLFIGALEPWRQQGVPEPGEG-----------GGKDGRYPGDLGFDPLGLA-KDPEEKEFMQLAELKNGRLA 144 (156)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHTTTCCTT-----------SSSSSSSSSSSSSSTSSTS-SSCHSHHCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHhhhhhcccccCCccc-----------ccccccCccccccchhhhh-hhhhhhHHHHHHHHHHHHHH
Confidence 56666565 78999999998764433221 1234579999999999998 69999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 025246 215 MLAVMGAWFQHI 226 (255)
Q Consensus 215 MlA~~G~~~Q~~ 226 (255)
||||+|+++|+.
T Consensus 145 Mla~~g~~~~e~ 156 (156)
T PF00504_consen 145 MLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999973
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=3e-40 Score=290.83 Aligned_cols=149 Identities=30% Similarity=0.368 Sum_probs=115.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCc--------------eeecccchhhhhhhhhhhhhhhccCCCC----CCcccccC
Q 025246 66 WFPGSTPPEWLDGSLPGDFGFDPLGL--------------EIVHCRWAMLGAAGIFIPELLTKLGILN----TPSWYTAG 127 (255)
Q Consensus 66 w~p~~~~P~~LdGslpGD~GFDPLGL--------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~----~~~w~~aG 127 (255)
-.|+.+.|+.|||+ .||+||||||| |||||||||||++|+++||+++.+|.+. .+.|+++
T Consensus 40 ~~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a- 117 (209)
T PLN00089 40 AIGFAAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDA- 117 (209)
T ss_pred ccccccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHH-
Confidence 35777888899999 99999999999 9999999999999999999988887531 1122211
Q ss_pred ccccccchhhH-HHHHH-HHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhhhhhh
Q 025246 128 ELEYFTDTTTL-FIVEM-IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 205 (255)
Q Consensus 128 ~~~~~a~~~~l-~~~qi-~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~~~k~ 205 (255)
+...+.. .++|| ++||++|..... ++... ...+.+||||++||||||.++|+++++++|+
T Consensus 118 ----~~~~~~~g~~~Qi~~~ig~~E~~~~~----~~~~~----------~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~ 179 (209)
T PLN00089 118 ----HDALLKSGAMIQIFAWIGFVDLAVSA----PAAAA----------AAEFDRTPGDFGFDLLALYPKDAAKMEKKKD 179 (209)
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHhh----ccccc----------cccCCCCCCCcCccccccCCCCHHHHHHHHH
Confidence 1111222 36787 569999964221 11110 0112468999999999997779999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcccCCchh
Q 025246 206 KEIKNGRLAMLAVMGAWFQHIYTGTGPID 234 (255)
Q Consensus 206 kEIkNGRLAMlA~~G~~~Q~~vTG~gPle 234 (255)
+||||||||||||+|+++|+++||+++++
T Consensus 180 ~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 180 KELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999998753
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.97 E-value=7e-32 Score=236.73 Aligned_cols=130 Identities=27% Similarity=0.434 Sum_probs=95.5
Q ss_pred CCCCCc---------------eeecccchhhhhhhhhhhhh-hhccCCCCC-Cccccc--CccccccchhhHHHHHH-HH
Q 025246 86 FDPLGL---------------EIVHCRWAMLGAAGIFIPEL-LTKLGILNT-PSWYTA--GELEYFTDTTTLFIVEM-IF 145 (255)
Q Consensus 86 FDPLGL---------------ElkHGR~AMLA~vG~lv~E~-l~~~G~~~~-~~w~~a--G~~~~~a~~~~l~~~qi-~l 145 (255)
|||+|| |||||||||||++|++++|+ ++.+|.+.. ...|+. .....+...+..+++|| ++
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ 126 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAF 126 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHH
Confidence 999998 99999999999999999997 555554321 112221 00112344567788997 67
Q ss_pred HHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccC--CCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 025246 146 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD--PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 223 (255)
Q Consensus 146 ~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFD--PLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~ 223 (255)
+|++|..++.+.. + +.++|||+.++ ++||.+.|+|+++++|+|||||||||||||+||++
T Consensus 127 ig~~E~~~~~~~~-----------------~-~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~ 188 (202)
T PLN00120 127 IGFLELAVMKDIT-----------------G-EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMV 188 (202)
T ss_pred HHHHHHHhhcccc-----------------c-CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987654311 0 12467765322 56665558999999999999999999999999999
Q ss_pred hhhcccCCch
Q 025246 224 QHIYTGTGPI 233 (255)
Q Consensus 224 Q~~vTG~gPl 233 (255)
|+.++|..|+
T Consensus 189 qe~l~g~~~~ 198 (202)
T PLN00120 189 HEQLGVELPI 198 (202)
T ss_pred HHHccCCCcC
Confidence 9999999885
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.63 E-value=1.9e-16 Score=144.27 Aligned_cols=57 Identities=40% Similarity=0.609 Sum_probs=52.3
Q ss_pred CCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhH
Q 025246 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlen 235 (255)
|..+|||++||||||. +|+++++++|.+||||||+||||++|+++|+++++.|++++
T Consensus 76 dG~~pGD~GFDPlgl~-~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 76 DGSLPGDFGFDPLGLG-SDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCcCccccC-CCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4568999999999998 48999999999999999999999999999999998887764
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.61 E-value=4.1e-16 Score=140.82 Aligned_cols=55 Identities=40% Similarity=0.641 Sum_probs=51.4
Q ss_pred CCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCch
Q 025246 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl 233 (255)
|..+|||++||||||. +|+++++++|.+||+||||||||++|+++|+++|+.|++
T Consensus 67 dG~~PGD~GFDPlGl~-~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLA-EDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4468999999999998 499999999999999999999999999999999998876
No 17
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.60 E-value=7.5e-16 Score=139.37 Aligned_cols=73 Identities=36% Similarity=0.586 Sum_probs=58.5
Q ss_pred hhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCc
Q 025246 153 RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232 (255)
Q Consensus 153 r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gP 232 (255)
+|.+..++|++...|.+ .|..+|||++||||+|. +|+|.++++|.+||+|||+||+|++|+++|+++||...
T Consensus 53 ~w~p~~~~~~~~~~P~~-------l~g~~PGd~GFDPlgl~-~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w 124 (255)
T PLN00170 53 SWIPAVKGGGNLVDPEW-------LDGSLPGDYGFDPLGLG-KDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPW 124 (255)
T ss_pred cccCCCCCCcccCCccc-------ccccCCCCCCcCccccC-CCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCCh
Confidence 45555556655443332 24568999999999998 59999999999999999999999999999999997643
Q ss_pred h
Q 025246 233 I 233 (255)
Q Consensus 233 l 233 (255)
+
T Consensus 125 ~ 125 (255)
T PLN00170 125 F 125 (255)
T ss_pred h
Confidence 3
No 18
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.56 E-value=2.5e-15 Score=135.99 Aligned_cols=54 Identities=37% Similarity=0.567 Sum_probs=49.8
Q ss_pred CCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCC
Q 025246 177 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231 (255)
Q Consensus 177 ~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~g 231 (255)
.|..+|||++||||||. +|+++++++|.+||||||+||+|++|+++|++++..+
T Consensus 58 Ldg~~pGD~GFDPlgl~-~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 58 LDGTLAGDFGFDPLGLG-EDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCCccCCCccccc-CCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 46679999999999998 4899999999999999999999999999999987655
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.51 E-value=9.4e-15 Score=135.76 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=50.0
Q ss_pred CCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCc
Q 025246 177 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232 (255)
Q Consensus 177 ~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gP 232 (255)
.|..+|||+|||||||++ ||++++++|.+||||||+||||++|+++|+++++.+.
T Consensus 123 LdG~lpGD~GFDPLGL~~-dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 123 LTGELPGDYGFDIAGLGK-DPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred cCCCCCcccCCCcccccc-CHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 466789999999999984 9999999999999999999999999999999886553
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.49 E-value=1.6e-14 Score=130.05 Aligned_cols=54 Identities=33% Similarity=0.479 Sum_probs=49.7
Q ss_pred CCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCc
Q 025246 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 232 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gP 232 (255)
|...|||++||||||. +|+++++++|.+||+|||+||||++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~-~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLG-ADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccC-cCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 4458999999999998 58999999999999999999999999999999988654
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.48 E-value=2.2e-14 Score=130.49 Aligned_cols=53 Identities=26% Similarity=0.460 Sum_probs=48.5
Q ss_pred CCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCC
Q 025246 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~g 231 (255)
|..+|||+|||||||. +||++++++|.+||||||+||||++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls-~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLS-ADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccc-cCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 3458999999999998 4999999999999999999999999999999998654
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.47 E-value=2.9e-14 Score=128.39 Aligned_cols=51 Identities=37% Similarity=0.539 Sum_probs=47.3
Q ss_pred CCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcc
Q 025246 177 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228 (255)
Q Consensus 177 ~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vT 228 (255)
.|..+|||+|||||||. +|+++++++|.+||||||+||+|++|+++|++++
T Consensus 48 Ldg~~pGd~GFDPlgl~-~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 48 LDGTMAGDYGFDPLRLG-ANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCCcCCCccccC-CCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 46679999999999998 4999999999999999999999999999999975
No 23
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.44 E-value=9.1e-14 Score=122.93 Aligned_cols=50 Identities=38% Similarity=0.479 Sum_probs=45.5
Q ss_pred CCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCC
Q 025246 182 PGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231 (255)
Q Consensus 182 PGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~g 231 (255)
.||.+||||||.++++++++++|.+||||||+||||++|+++|+.++..|
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 68888999999876788899999999999999999999999999987544
No 24
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.44 E-value=5.9e-14 Score=127.74 Aligned_cols=56 Identities=41% Similarity=0.590 Sum_probs=47.9
Q ss_pred CCCCCCCcccCCCCCCCCChh------hhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhH
Q 025246 178 DVGYPGGLWFDPLGWGSGSPE------KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 235 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe------~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlen 235 (255)
|...|||++||||||. ||+ +.++++.+||+|||+||||++|+++|+++++.|.+.+
T Consensus 56 dG~lPGD~GFDPlGL~--~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 56 DGTLPGDFGFDPLGLS--DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred CCCCCCccCCCccccC--CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 4568999999999996 443 4567899999999999999999999999998877654
No 25
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.42 E-value=8.6e-14 Score=125.49 Aligned_cols=52 Identities=35% Similarity=0.487 Sum_probs=47.5
Q ss_pred CCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhccc
Q 025246 177 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229 (255)
Q Consensus 177 ~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG 229 (255)
.|..+|||++||||+|. +++++++++|.+||||||+||||++|+++|++++.
T Consensus 57 Ldg~~pgd~GfDPlgls-~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 57 LDGSAPGDFGFDPLRLG-EVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCCcccCCCccccc-cCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 35668999999999998 48999999999999999999999999999999753
No 26
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.40 E-value=1.5e-13 Score=126.23 Aligned_cols=52 Identities=38% Similarity=0.584 Sum_probs=46.3
Q ss_pred CCCCCCCcccCCCCCCCCChhh-------------------------------------------hhhhhhhhhhhhhHH
Q 025246 178 DVGYPGGLWFDPLGWGSGSPEK-------------------------------------------VKELRTKEIKNGRLA 214 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe~-------------------------------------------~~~~k~kEIkNGRLA 214 (255)
|..+|||+|||||||++ |||. ++++|..||+|||+|
T Consensus 66 dGslpGD~GfDplgL~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwA 144 (286)
T PLN00187 66 DGSLVGDYGFDPFGLGK-PAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWA 144 (286)
T ss_pred cCCCCCcCCCCcccccC-ChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHH
Confidence 34589999999999984 7875 599999999999999
Q ss_pred HHHHHHHHHhhhcccC
Q 025246 215 MLAVMGAWFQHIYTGT 230 (255)
Q Consensus 215 MlA~~G~~~Q~~vTG~ 230 (255)
|||++|+++||+++|.
T Consensus 145 MLAvaG~lvpEll~G~ 160 (286)
T PLN00187 145 MLATLGALSVEALTGV 160 (286)
T ss_pred HHHhhchhhHHhccCC
Confidence 9999999999998763
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.35 E-value=7.9e-13 Score=110.97 Aligned_cols=51 Identities=45% Similarity=0.634 Sum_probs=46.0
Q ss_pred CCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCC
Q 025246 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 231 (255)
Q Consensus 179 ~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~g 231 (255)
..++|+++|||+||.+ ++ +++++|..||||||+||+|++|+++|++.++.+
T Consensus 7 G~~~~~~gfDPlgl~~-~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 7 GSVPGDYGFDPLGLSS-DP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp STSTTSTSSSTTTTTT-SH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred CCCCCCCCCChhhccc-ch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 3489999999999984 66 899999999999999999999999999998843
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.13 E-value=1.9e-11 Score=107.74 Aligned_cols=45 Identities=49% Similarity=0.756 Sum_probs=40.8
Q ss_pred CCCCcccCCCCCCC-CChhhhhhhhhhhhhhhhHHHHHHHHHHHhhh
Q 025246 181 YPGGLWFDPLGWGS-GSPEKVKELRTKEIKNGRLAMLAVMGAWFQHI 226 (255)
Q Consensus 181 yPGg~gFDPLgl~~-~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~ 226 (255)
-|.++ |||+||.. .|+++++++|.+||||||+||+|++|+++|++
T Consensus 42 ~p~g~-fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 42 APLGF-FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCC-CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 46676 99999973 58899999999999999999999999999996
No 29
>PHA02337 putative high light inducible protein
Probab=98.20 E-value=1.1e-06 Score=56.91 Aligned_cols=28 Identities=36% Similarity=0.243 Sum_probs=26.0
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcccCCc
Q 025246 205 TKEIKNGRLAMLAVMGAWFQHIYTGTGP 232 (255)
Q Consensus 205 ~kEIkNGRLAMlA~~G~~~Q~~vTG~gP 232 (255)
..|+-||||||+||...+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999973
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.14 E-value=1.6e-06 Score=74.63 Aligned_cols=46 Identities=35% Similarity=0.503 Sum_probs=39.5
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhhhcc-cCCchhHHHHhhcCC
Q 025246 198 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYT-GTGPIDNLIAHLADP 243 (255)
Q Consensus 198 e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vT-G~gPlenL~~hladP 243 (255)
...++.|..|+.||||||+||+--++-|++| |+||++||-..-.=|
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvP 176 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVP 176 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCc
Confidence 3467889999999999999999999999999 999999986544333
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.65 E-value=3.3e-05 Score=69.32 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=33.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHH
Q 025246 203 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIA 238 (255)
Q Consensus 203 ~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~ 238 (255)
+...|+-|||+|||||+..++-+.+||+|.++|+..
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 456899999999999999999999999999999865
No 32
>PHA02337 putative high light inducible protein
Probab=96.93 E-value=0.00027 Score=45.84 Aligned_cols=25 Identities=24% Similarity=0.058 Sum_probs=22.8
Q ss_pred eeecccchhhhhhhhhhhhhhhccC
Q 025246 92 EIVHCRWAMLGAAGIFIPELLTKLG 116 (255)
Q Consensus 92 ElkHGR~AMLA~vG~lv~E~l~~~G 116 (255)
|..+||+||+|++-.++.|+++.-+
T Consensus 6 E~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 6 EIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999987644
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.64 E-value=0.0042 Score=56.01 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.9
Q ss_pred eeecccchhhhhhhhhhhhhhhccCCC
Q 025246 92 EIVHCRWAMLGAAGIFIPELLTKLGIL 118 (255)
Q Consensus 92 ElkHGR~AMLA~vG~lv~E~l~~~G~~ 118 (255)
|+++||+||+|++-.++.|+++..|++
T Consensus 163 E~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 163 ELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred HhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 999999999999999999999877664
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=94.00 E-value=0.034 Score=48.32 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=24.6
Q ss_pred eeecccchhhhhhhhhhhhhhh-ccCCC
Q 025246 92 EIVHCRWAMLGAAGIFIPELLT-KLGIL 118 (255)
Q Consensus 92 ElkHGR~AMLA~vG~lv~E~l~-~~G~~ 118 (255)
|+.+||.||||++-.++.|+++ .-|++
T Consensus 139 E~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 139 ELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 9999999999999999999998 66664
No 35
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.98 E-value=7.7 Score=38.75 Aligned_cols=28 Identities=36% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCCCCCCc--------eeecccchhhhhhhhhhhhh
Q 025246 84 FGFDPLGL--------EIVHCRWAMLGAAGIFIPEL 111 (255)
Q Consensus 84 ~GFDPLGL--------ElkHGR~AMLA~vG~lv~E~ 111 (255)
+||||-+| ||-|.+.|==++==+=.+|.
T Consensus 71 ~gFDpeaLERaAKAlrein~s~~aK~vfel~r~qE~ 106 (630)
T KOG0742|consen 71 SGFDPEALERAAKALREINHSPYAKDVFELARMQEQ 106 (630)
T ss_pred cCCChHHHHHHHHHHHhhccCccHHHHHHHHHHHHH
Confidence 69999999 88888877655554445553
No 36
>PLN02449 ferrochelatase
Probab=52.36 E-value=9.3 Score=38.30 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhcccCCch
Q 025246 213 LAMLAVMGAWFQHIYTGTGPI 233 (255)
Q Consensus 213 LAMlA~~G~~~Q~~vTG~gPl 233 (255)
+||+||+.+++-++++|.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 37
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=28.81 E-value=19 Score=36.39 Aligned_cols=36 Identities=28% Similarity=0.544 Sum_probs=25.0
Q ss_pred eeecccchhhhhhhhhhhhhhhccCCCCCCcccccCccc
Q 025246 92 EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELE 130 (255)
Q Consensus 92 ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~w~~aG~~~ 130 (255)
+-+-|| .|++|+.+||++..--.--.++||.-|-..
T Consensus 341 ~~~~~r---vGT~GYMAPEvl~ne~Y~~s~Dwf~lGCll 376 (591)
T KOG0986|consen 341 KPIRGR---VGTVGYMAPEVLQNEVYDFSPDWFSLGCLL 376 (591)
T ss_pred Cccccc---cCcccccCHHHHcCCcccCCccHHHHHhHH
Confidence 556667 689999999998763322246798866543
No 38
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=28.74 E-value=15 Score=32.22 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.2
Q ss_pred CCCCCCc-----eeecccchhhhhhhhhh
Q 025246 85 GFDPLGL-----EIVHCRWAMLGAAGIFI 108 (255)
Q Consensus 85 GFDPLGL-----ElkHGR~AMLA~vG~lv 108 (255)
+|.|++| ||..|=|+|.|+++.++
T Consensus 37 ~lhp~ale~~~~~i~~GiW~maavi~~l~ 65 (192)
T COG4721 37 LLHPLALEPFANEILFGIWFMAAVIAALF 65 (192)
T ss_pred hcchhhcCccccchHHHHHHHHHHHeeee
Confidence 4888888 99999999999998875
No 39
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=21.43 E-value=43 Score=25.56 Aligned_cols=18 Identities=44% Similarity=0.494 Sum_probs=15.5
Q ss_pred CCCCCc---eeecccchhhhh
Q 025246 86 FDPLGL---EIVHCRWAMLGA 103 (255)
Q Consensus 86 FDPLGL---ElkHGR~AMLA~ 103 (255)
||||== |-.||=-||||+
T Consensus 2 WDPLlnefP~tvHGfRCMLAi 22 (78)
T PF01524_consen 2 WDPLLNEFPETVHGFRCMLAI 22 (78)
T ss_pred CccccccCCccccchhHHHHH
Confidence 899855 999999999965
Done!