Query 025246
Match_columns 255
No_of_seqs 229 out of 1190
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 100.0 1.9E-72 6.6E-77 509.4 5.7 252 1-255 1-269 (269)
2 2wsc_3 LHCA3, type II chloroph 100.0 1.8E-65 6.2E-70 465.2 5.7 207 48-255 41-276 (276)
3 2wsc_4 Chlorophyll A-B binding 100.0 1.9E-65 6.6E-70 460.2 1.8 196 52-254 41-250 (251)
4 3pl9_A Chlorophyll A-B binding 100.0 1.6E-61 5.5E-66 431.3 8.6 170 58-252 6-242 (243)
5 2bhw_A Chlorophyll A-B binding 100.0 2E-60 6.8E-65 423.7 14.9 189 49-253 7-226 (232)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 1.3E-55 4.4E-60 394.1 5.8 175 61-254 43-239 (241)
7 2wsc_4 Chlorophyll A-B binding 99.5 3.3E-15 1.1E-19 134.1 1.3 54 179-233 68-121 (251)
8 2bhw_A Chlorophyll A-B binding 99.5 2.6E-14 8.9E-19 126.9 5.5 51 178-229 37-87 (232)
9 2wsc_2 LHCA2, type II chloroph 99.4 9.4E-15 3.2E-19 132.2 1.0 54 179-233 79-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.4 9.8E-14 3.4E-18 123.7 2.4 51 178-229 25-118 (243)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 1.3E-13 4.3E-18 123.1 1.2 49 179-228 60-108 (241)
12 2wsc_3 LHCA3, type II chloroph 99.3 2.3E-13 8E-18 123.5 -2.3 52 180-233 72-129 (276)
13 1vp2_A Putative xanthosine tri 32.1 11 0.00039 32.3 0.5 39 180-220 155-197 (208)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1.9e-72 Score=509.37 Aligned_cols=252 Identities=82% Similarity=1.422 Sum_probs=151.7
Q ss_pred CccccccchhhhccCCc--cccccccccccccccccCccccccccCCCCCc-ccccccCCcCCCCCCCCCCCCCCCCCCC
Q 025246 1 MASVCASPAVAAISSPS--SQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLWFPGSTPPEWLD 77 (255)
Q Consensus 1 ~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~w~p~~~~P~~Ld 77 (255)
||++|+|+++++++.+. .++.....+++++ |+ +++++.++.++...+ ++.+++.++|++||++|+|+.++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~wlpg~~~P~~L~ 78 (269)
T 2wsc_2 1 MASACASSAIAAVAISTPSSQKNGSPSGTSKA-FL-GRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLD 78 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHhhHHHHHhhcCccccccccccccchhh-cc-ccccccccccccccccCCcceeecccCCCcccccCCCCCccccc
Confidence 78999998887764444 3455567777777 77 666665554432222 4555677789999999999999999999
Q ss_pred CCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCCCCCcccccCccccccchhhHHHHHHH
Q 025246 78 GSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMI 144 (255)
Q Consensus 78 GslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~w~~aG~~~~~a~~~~l~~~qi~ 144 (255)
|++||||||||||| |||||||||||++|+++||+++..|++..+.|+++|...|+.+.++++++|++
T Consensus 79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~ 158 (269)
T 2wsc_2 79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELV 158 (269)
T ss_dssp ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTT
T ss_pred CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888877889999988889988899999999
Q ss_pred HHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHh
Q 025246 145 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 224 (255)
Q Consensus 145 l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q 224 (255)
+||++|.+||+++.++|+++.++.|........|.+||||++||||||.++|+|+++++|.+||||||||||||+|+++|
T Consensus 159 liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~ 238 (269)
T 2wsc_2 159 FIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238 (269)
T ss_dssp HHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHH
T ss_pred HHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 99999999999999999999888887654455677899999999999987789999999999999999999999999999
Q ss_pred hhcccCCchhHHH-HhhcCCcccceeecccCC
Q 025246 225 HIYTGTGPIDNLI-AHLADPGHATVFAAFTPK 255 (255)
Q Consensus 225 ~~vTG~gPlenL~-~hladP~~~n~~~~~~~~ 255 (255)
+++||+||++||. +||+|| ||||+++++.|
T Consensus 239 ~~~tg~g~l~~l~~~HladP-~~n~~~~~~~~ 269 (269)
T 2wsc_2 239 HIYTGTGPIDNLFAAHLADP-HATIFAAFTPK 269 (269)
T ss_dssp HHHTTTCSSCCCSCCCCCCS-CCCCCSSSCCC
T ss_pred HHhcCCChHHHHHHHHhcCc-ccchhhhccCC
Confidence 9999999999999 999999 99999999875
No 2
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.8e-65 Score=465.23 Aligned_cols=207 Identities=43% Similarity=0.860 Sum_probs=119.7
Q ss_pred CcccccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc------------------eeecccchhhhhhhhhhh
Q 025246 48 GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL------------------EIVHCRWAMLGAAGIFIP 109 (255)
Q Consensus 48 ~~~~~~~~~~~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL------------------ElkHGR~AMLA~vG~lv~ 109 (255)
.+|++...+++|++||++|+|+.++|+||||++||||||||||| |||||||||||++|++++
T Consensus 41 ~~~~~~~~~~~~g~~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~ 120 (276)
T 2wsc_3 41 LVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120 (276)
T ss_dssp --------------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSC
T ss_pred eEecccCCccccCCCccccCCCCCCcccccCcCCCccCCCccccCChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHH
Confidence 45554555567999999999999999999999999999999998 999999999999999999
Q ss_pred hhhhccCCCC--CCc-ccc------cCccccccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCC--CCCCC
Q 025246 110 ELLTKLGILN--TPS-WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK--LTGTD 178 (255)
Q Consensus 110 E~l~~~G~~~--~~~-w~~------aG~~~~~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~--~~~~d 178 (255)
|+++..|++. .+. |++ +|..+||.+..+++++|+++||++|.+|++++.++|+++.+++|+.++ ....|
T Consensus 121 E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d 200 (276)
T 2wsc_3 121 EILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGE 200 (276)
T ss_dssp SSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSS
T ss_pred HHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCccccccccccccccccccc
Confidence 9999888752 243 988 455678888888999999999999999999999999998888775433 23457
Q ss_pred CCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeecccCC
Q 025246 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 255 (255)
Q Consensus 179 ~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~~~ 255 (255)
.+||||++||||||.+ |+++++++|.+||||||||||||+|+++|+++||+||++||.+||+||+||||++++..|
T Consensus 201 ~~yPG~~~fDPlgl~~-~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~~ 276 (276)
T 2wsc_3 201 PAYPGGPFFNPLGFGK-DEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276 (276)
T ss_dssp CTTTSSSSCCCCCCSS-SCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--------------------
T ss_pred ccCCCcccccchhccc-ccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccCC
Confidence 7899999999999985 777799999999999999999999999999999999999999999999999999998765
No 3
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=1.9e-65 Score=460.21 Aligned_cols=196 Identities=51% Similarity=0.975 Sum_probs=141.3
Q ss_pred ccccCCcCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCC
Q 025246 52 VSVSAAAADP-NRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGI 117 (255)
Q Consensus 52 ~~~~~~~~~~-~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~ 117 (255)
.+++..+|++ ||++|+|+.++|+||||++||||||||||| |||||||||||++|++++|+++..|+
T Consensus 41 ~~~~~~~~~~~~r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~ 120 (251)
T 2wsc_4 41 CSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120 (251)
T ss_dssp ----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCS
T ss_pred ccccccccCcchhhhccCCCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc
Confidence 3445568888 899999999999999999999999999999 99999999999999999999999888
Q ss_pred CCCCcccccCccccccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCh
Q 025246 118 LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 197 (255)
Q Consensus 118 ~~~~~w~~aG~~~~~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dp 197 (255)
+..+.|+++|..+|+.++++++++|+++||++|.+|++++.++|+++.+|.|...+.+..|.+||||+ ||||||.+
T Consensus 121 ~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~-FDPLgl~~--- 196 (251)
T 2wsc_4 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP--- 196 (251)
T ss_dssp SCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCT-TCCCCCCS---
T ss_pred cCCccccccchHhhhccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCc-cCccchhH---
Confidence 87788999998888888888889999999999999999999999998888887655555566899999 99999963
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeecccC
Q 025246 198 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTP 254 (255)
Q Consensus 198 e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~~ 254 (255)
++++|+|||||||| ||||+||++|+++||++|++||.+||+||+||||++++..
T Consensus 197 --~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 197 --TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp --SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred --HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 67899999999999 9999999999999999999999999999999999999754
No 4
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.6e-61 Score=431.26 Aligned_cols=170 Identities=47% Similarity=0.873 Sum_probs=117.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc----------------------------------------------
Q 025246 58 AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL---------------------------------------------- 91 (255)
Q Consensus 58 ~~~~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL---------------------------------------------- 91 (255)
++.++|++|||+.++|+|||||||||||||||||
T Consensus 6 ~~~~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 85 (243)
T 3pl9_A 6 GFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSE 85 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccc
Confidence 5667999999999999999999999999999997
Q ss_pred ----------eeecccchhhhhhhhhhhhhhhccCCCCCCcccccCcc------cccc-----chhhHHHHHHHHHHHHh
Q 025246 92 ----------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL------EYFT-----DTTTLFIVEMIFIGWAE 150 (255)
Q Consensus 92 ----------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~w~~aG~~------~~~a-----~~~~l~~~qi~l~g~~E 150 (255)
|||||||||||++||++||+++.. .|+++|.. .|+. +.++++++|+++||++|
T Consensus 86 ~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~------~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E 159 (243)
T 3pl9_A 86 VFGLQRFRECELIHGRWAMLATLGALTVEGLTGI------TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIE 159 (243)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------CTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCc------ccccccccccccccccccCccchhhHHHHHHHHHHHHHHH
Confidence 689999999999999999998632 58876642 2332 23478899999999999
Q ss_pred hhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccC
Q 025246 151 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 230 (255)
Q Consensus 151 ~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~ 230 (255)
.+|++++. ..+..||||+ ||||||.+ |+++++++|.+|||||||||+||+|+++|+++||+
T Consensus 160 ~~R~~~~~-----------------~~~~~~PG~~-FDPLGl~~-d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~ 220 (243)
T 3pl9_A 160 FQRNAELD-----------------TEKRLYPGGT-FDPLGLAS-DPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGK 220 (243)
T ss_dssp HHHHSCCC-----------------TTTTTCCCGG-GCTTCTTC-STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhhcccC-----------------CccccCCCcc-hhhccccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence 99987621 1134599999 99999994 99999999999999999999999999999999999
Q ss_pred CchhHHHHhhcCCcccceeecc
Q 025246 231 GPIDNLIAHLADPGHATVFAAF 252 (255)
Q Consensus 231 gPlenL~~hladP~~~n~~~~~ 252 (255)
||++||.+||+||+||||++|+
T Consensus 221 Gpl~~l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 221 GPLNNWVTHLSDPLHTTILDRF 242 (243)
T ss_dssp CHHHHHHHHHHCSGGGSTTTTT
T ss_pred ChHHHHHHHhcCcchhhhhhhc
Confidence 9999999999999999999986
No 5
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2e-60 Score=423.66 Aligned_cols=189 Identities=41% Similarity=0.778 Sum_probs=159.9
Q ss_pred cccccccCCcCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhh
Q 025246 49 TRSVSVSAAAADPNRPLWFPG--STPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLT 113 (255)
Q Consensus 49 ~~~~~~~~~~~~~~r~~w~p~--~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~ 113 (255)
.|+.++.+.||++||++|++. .++|+||||++||||||||||| |||||||||||++|+++||+++
T Consensus 7 ~~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~ 86 (232)
T 2bhw_A 7 KKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLS 86 (232)
T ss_dssp ---CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhc
Confidence 444455678999999999974 5999999999999999999999 9999999999999999999999
Q ss_pred ccCC-CCCCcccccCccc-------ccc--------chhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCC
Q 025246 114 KLGI-LNTPSWYTAGELE-------YFT--------DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 177 (255)
Q Consensus 114 ~~G~-~~~~~w~~aG~~~-------~~a--------~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~ 177 (255)
+.|+ ++.+.|+++|... |+. ....++++|+++||++|.+|+++ |..+ ...
T Consensus 87 ~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g----------~~~ 152 (232)
T 2bhw_A 87 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLG----------EVV 152 (232)
T ss_dssp TTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE----ETTE----------ECS
T ss_pred cCCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----Cccc----------ccc
Confidence 8886 6667899877421 221 12356678999999999999865 1111 123
Q ss_pred CCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCchhHHHHhhcCCcccceeeccc
Q 025246 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 253 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPlenL~~hladP~~~n~~~~~~ 253 (255)
|+.||||+ ||||||. +|+++++++|.+|||||||||+||+|+++|+.+||++|++||.+|++||+||||++++.
T Consensus 153 d~~~Pg~~-fdPlgl~-~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~ 226 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT 226 (232)
T ss_dssp SSSCCCTT-SCTTCTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTT
T ss_pred cccCCCcc-cccchhc-cchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHH
Confidence 55699999 9999998 59999999999999999999999999999999999999999999999999999999863
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=1.3e-55 Score=394.08 Aligned_cols=175 Identities=46% Similarity=0.899 Sum_probs=120.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------------eeecccchhhhhhhhhhhhhhhccCCCCCCccc--c
Q 025246 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGL-------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY--T 125 (255)
Q Consensus 61 ~~r~~w~p~~~~P~~LdGslpGD~GFDPLGL-------------ElkHGR~AMLA~vG~lv~E~l~~~G~~~~~~w~--~ 125 (255)
..|++|+|+.++|+||||++||||||||||| |||||||||||++|+++||+++..++.....|. .
T Consensus 43 sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~ 122 (241)
T 2wsc_1 43 RMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALP 122 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCS
T ss_pred ccccccCCCCCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccC
Confidence 4578899999999999999999999999999 999999999999999999998764333222332 1
Q ss_pred cCcccc------ccchhhHHHHHHHHHHHHhhhhhccccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhh
Q 025246 126 AGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK 199 (255)
Q Consensus 126 aG~~~~------~a~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGg~gFDPLgl~~~dpe~ 199 (255)
.|...| |...++++++|+++||++|.+|+.+. + ..+..||||. ||||||. +|+++
T Consensus 123 ~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~--------~---------~~~~~yPgg~-fDPlgl~-~~~~~ 183 (241)
T 2wsc_1 123 GGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK--------D---------PEKKKYPGGA-FDPLGYS-KDPKK 183 (241)
T ss_dssp SCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC--------S---------SCCSSSCSCC-SCSSSCS-CSSSS
T ss_pred CcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc--------C---------CCCCCCCCCc-ccccccc-cchhH
Confidence 232233 33456788899999999999986431 1 1234699995 9999998 58999
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhh-hcccCCchhHHHHhhcCCcccceeecccC
Q 025246 200 VKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTP 254 (255)
Q Consensus 200 ~~~~k~kEIkNGRLAMlA~~G~~~Q~-~vTG~gPlenL~~hladP~~~n~~~~~~~ 254 (255)
++++|.+|||||||||+|++|+++|+ ++||+||++||.+||+||+||||++++..
T Consensus 184 ~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~ 239 (241)
T 2wsc_1 184 LEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239 (241)
T ss_dssp CCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred HHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence 99999999999999999999999999 58999999999999999999999998754
No 7
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.49 E-value=3.3e-15 Score=134.06 Aligned_cols=54 Identities=39% Similarity=0.646 Sum_probs=38.8
Q ss_pred CCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCch
Q 025246 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233 (255)
Q Consensus 179 ~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl 233 (255)
..+|||++||||||. +|||++++++.+||||||+||||++|+++|+++|+.|++
T Consensus 68 g~~pGd~gfDPlGl~-~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 68 GSLPGDNGFDPLGLA-EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp -------------CC-CSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCcCCCCCCCccccC-CChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 358999999999998 599999999999999999999999999999999998766
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.47 E-value=2.6e-14 Score=126.93 Aligned_cols=51 Identities=27% Similarity=0.510 Sum_probs=47.2
Q ss_pred CCCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhccc
Q 025246 178 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 229 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG 229 (255)
|..+|||++||||||+ +|+|+++++|..||||||+||||++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs-~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLS-ADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCC-CCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 4568999999999998 59999999999999999999999999999998764
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.45 E-value=9.4e-15 Score=132.18 Aligned_cols=54 Identities=33% Similarity=0.566 Sum_probs=35.9
Q ss_pred CCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcccCCch
Q 025246 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233 (255)
Q Consensus 179 ~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl 233 (255)
..+|||++||||||. +|+|+++++|.+||||||+||||++|+++|+++++.|.+
T Consensus 79 G~~pGD~GfDPlGL~-~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 79 GSLPGDFGFDPLGLG-SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred CcCCCCCCCCccccC-CCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 458999999999997 599999999999999999999999999999999876644
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.37 E-value=9.8e-14 Score=123.68 Aligned_cols=51 Identities=39% Similarity=0.582 Sum_probs=28.9
Q ss_pred CCCCCCCcccCCCCCCCCChh-------------------------------------------hhhhhhhhhhhhhhHH
Q 025246 178 DVGYPGGLWFDPLGWGSGSPE-------------------------------------------KVKELRTKEIKNGRLA 214 (255)
Q Consensus 178 d~~yPGg~gFDPLgl~~~dpe-------------------------------------------~~~~~k~kEIkNGRLA 214 (255)
|..+|||+|||||||++ +|| .++++|..||||||.|
T Consensus 25 dGslpGD~GfDPlgL~~-~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwA 103 (243)
T 3pl9_A 25 DGSLVGDYGFDPFGLGK-PAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWA 103 (243)
T ss_dssp ----------------------------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCCccccCC-ChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhH
Confidence 45689999999999994 776 3789999999999999
Q ss_pred HHHHHHHHHhhhccc
Q 025246 215 MLAVMGAWFQHIYTG 229 (255)
Q Consensus 215 MlA~~G~~~Q~~vTG 229 (255)
|||++|++++|+++|
T Consensus 104 MLAvlG~lvpE~l~g 118 (243)
T 3pl9_A 104 MLATLGALTVEGLTG 118 (243)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhHHhhcC
Confidence 999999999999875
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.34 E-value=1.3e-13 Score=123.11 Aligned_cols=49 Identities=35% Similarity=0.550 Sum_probs=45.2
Q ss_pred CCCCCCcccCCCCCCCCChhhhhhhhhhhhhhhhHHHHHHHHHHHhhhcc
Q 025246 179 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 228 (255)
Q Consensus 179 ~~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vT 228 (255)
..+|||++||||||. +|+|+++++|.+||||||+||+|++|+++|++++
T Consensus 60 G~~pgd~gfDPlgl~-~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 60 GSAPGDFGFDPLGLG-EVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp -CTTSSCCCSSTTTT-TTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred CCCCCcCCcCccccC-CCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 347999999999998 5999999999999999999999999999999865
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.25 E-value=2.3e-13 Score=123.47 Aligned_cols=52 Identities=46% Similarity=0.638 Sum_probs=35.4
Q ss_pred CCCCCcccCCCCCCCCChhhh------hhhhhhhhhhhhHHHHHHHHHHHhhhcccCCch
Q 025246 180 GYPGGLWFDPLGWGSGSPEKV------KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 233 (255)
Q Consensus 180 ~yPGg~gFDPLgl~~~dpe~~------~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl 233 (255)
.+|||++||||||. |++++ ++++.+||||||+||||++|+++|+++++.|.+
T Consensus 72 ~~pGD~GfDPlGl~--d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 72 SLPGDYGFDPLGLS--DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp -------------C--CCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred cCCCccCCCccccC--ChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 47999999999993 88888 999999999999999999999999999987643
No 13
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog; structural genomics, joint center for structural genomics, JCSG; 1.78A {Thermotoga maritima} SCOP: c.51.4.1
Probab=32.10 E-value=11 Score=32.28 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=22.5
Q ss_pred CCCCCcccCCCCCCCCChhhhhhhhhhhhhh----hhHHHHHHHH
Q 025246 180 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKN----GRLAMLAVMG 220 (255)
Q Consensus 180 ~yPGg~gFDPLgl~~~dpe~~~~~k~kEIkN----GRLAMlA~~G 220 (255)
.=.+|+||||+.+.+.....+.+| .|.|| =.-|+-.+.-
T Consensus 155 rG~~GFGYDPIF~p~~~~kT~AEm--~eeKn~iSHR~kAl~~l~~ 197 (208)
T 1vp2_A 155 RGTGGFGYDPFFIPDGYDKTFGEI--PHLKEKISHRSKAFRKLFS 197 (208)
T ss_dssp CCSCSSTTGGGEEETTCSSCTTTC--GGGHHHHSHHHHHHHHHHH
T ss_pred cCCCCCCCCceEEECCCCcCHHHH--HHHHHHhCHHHHHHHHHHH
Confidence 346788999987543333556666 45555 4445444443
Done!