Query 025247
Match_columns 255
No_of_seqs 157 out of 1227
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f75_A Undecaprenyl pyrophosph 100.0 1.2E-53 4.2E-58 376.4 13.9 185 64-255 18-248 (249)
2 3sgv_B Undecaprenyl pyrophosph 100.0 1.1E-52 3.7E-57 369.2 16.2 189 60-255 11-245 (253)
3 2vg3_A Undecaprenyl pyrophosph 100.0 1.7E-52 5.8E-57 374.1 16.7 184 65-255 54-283 (284)
4 2d2r_A Undecaprenyl pyrophosph 100.0 3.9E-53 1.3E-57 372.2 11.6 184 64-255 13-242 (245)
5 3qas_B Undecaprenyl pyrophosph 100.0 1.8E-52 6.3E-57 369.2 15.0 184 65-255 12-245 (253)
6 4h8e_A Undecaprenyl pyrophosph 100.0 2.3E-52 7.8E-57 367.8 15.3 185 64-255 22-252 (256)
7 3ugs_B Undecaprenyl pyrophosph 100.0 1.4E-50 4.7E-55 350.4 17.9 176 64-255 4-225 (225)
8 2vg0_A Short-chain Z-isoprenyl 100.0 5.1E-50 1.8E-54 349.5 15.2 182 65-249 1-227 (227)
9 1xho_A Chorismate mutase; sout 61.2 10 0.00034 30.1 4.4 33 145-177 39-71 (148)
10 1dbf_A Protein (chorismate mut 54.5 12 0.00042 28.9 3.8 31 147-177 12-42 (127)
11 1ufy_A Chorismate mutase; shik 51.9 15 0.00051 28.3 3.9 31 147-177 11-42 (122)
12 3ngx_A Bifunctional protein fo 41.5 83 0.0029 27.3 7.6 53 65-121 25-77 (276)
13 1eij_A Hypothetical protein MT 38.4 64 0.0022 22.8 5.2 39 151-194 31-69 (80)
14 2pfu_A Biopolymer transport EX 35.1 39 0.0013 23.7 3.8 24 80-103 68-91 (99)
15 2p6v_A Transcription initiatio 33.3 27 0.00093 26.4 2.7 46 147-202 34-79 (114)
16 2h7b_A Core-binding factor, ML 32.9 53 0.0018 24.5 4.2 41 152-202 24-64 (105)
17 2fh0_A Hypothetical 16.0 kDa p 32.2 72 0.0025 22.6 4.6 38 151-193 29-66 (81)
18 4b4u_A Bifunctional protein fo 31.3 92 0.0032 27.5 6.2 54 65-121 51-104 (303)
19 2kix_A BM2 protein; channel, t 27.2 91 0.0031 17.7 3.6 21 11-31 8-28 (33)
20 4a26_A Putative C-1-tetrahydro 22.4 1.7E+02 0.0057 25.7 6.3 53 66-121 36-88 (300)
21 2cru_A Programmed cell death p 22.4 1.7E+02 0.0057 22.1 5.4 39 151-194 61-99 (118)
22 3pzj_A Probable acetyltransfer 22.0 1.6E+02 0.0056 22.6 5.8 41 69-109 121-165 (209)
23 4a5o_A Bifunctional protein fo 21.1 1.9E+02 0.0065 25.1 6.3 53 65-120 33-85 (286)
24 3l07_A Bifunctional protein fo 20.9 1.8E+02 0.0061 25.3 6.1 54 65-121 32-85 (285)
25 2c2x_A Methylenetetrahydrofola 20.1 1.9E+02 0.0065 25.1 6.1 52 66-120 31-82 (281)
No 1
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=1.2e-53 Score=376.42 Aligned_cols=185 Identities=20% Similarity=0.328 Sum_probs=145.1
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHh-----
Q 025247 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKL----- 120 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l----- 120 (255)
.++|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.++ ||+.+
T Consensus 18 ~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~ 97 (249)
T 1f75_A 18 AQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLN 97 (249)
T ss_dssp TTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHH
T ss_pred CCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999963 179999999999999999999999996 999999865 33221
Q ss_pred ---hh--cCC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025247 121 ---NN--ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 121 ---~~--~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.. .+. +|.. ..+..|.++++++|++|++||||+||++|+|++++++ +.|.+++++
T Consensus 98 ~~~~~l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v-~~g~l~~~~-- 174 (249)
T 1f75_A 98 TFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERY-KSGEISLDE-- 174 (249)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHH-HTTSSCGGG--
T ss_pred HHHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh--
Confidence 11 111 2221 1234588999999999999999999999999998875 677888886
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025247 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.++++|+ +.++|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+||+|+||||+
T Consensus 175 --I~e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~r~RRfG~ 248 (249)
T 1f75_A 175 --ISETHFNEYLF--TANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNRHRRFGG 248 (249)
T ss_dssp --CSHHHHGGGST--TTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHTTC------
T ss_pred --CCHHHHHHhhc--cCCCCCCcEEEEcCCCccccCCchhhhhceEEEECCCCCCcCCHHHHHHHHHHHhcCccCCCC
Confidence 78999999998 46899999999999999999999999999999999996 999999999999999999999996
No 2
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=100.00 E-value=1.1e-52 Score=369.23 Aligned_cols=189 Identities=16% Similarity=0.223 Sum_probs=149.8
Q ss_pred hhcCCCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhh
Q 025247 60 KALDIDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN 121 (255)
Q Consensus 60 ~~~~~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~ 121 (255)
.....++|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.++ ||+.+.
T Consensus 11 ~~~~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~ 90 (253)
T 3sgv_B 11 EKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFV 90 (253)
T ss_dssp --CCTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHH
T ss_pred cccCCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHH
Confidence 34456789999999999975 189999999999999999999999997 999999875 665443
Q ss_pred h----------cCC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 025247 122 N----------ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGK 174 (255)
Q Consensus 122 ~----------~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~ 174 (255)
. .++ +|.. ..+..|.++++++||+|.+||||+||++|+|++++++ +.|.+++
T Consensus 91 ~~l~~~~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v-~~g~l~~ 169 (253)
T 3sgv_B 91 WALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQP 169 (253)
T ss_dssp TTHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HHTSSCG
T ss_pred HHHHHHHHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCCh
Confidence 1 111 2221 1234689999999999999999999999999998886 6678888
Q ss_pred cccccccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhc
Q 025247 175 IQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNY 253 (255)
Q Consensus 175 ~~~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRf 253 (255)
++ ++++.++++|+ +.+.|||||+|||||+.|||||||||++||||||++.+ |+|++.+|.+||.+||+|+|||
T Consensus 170 ~~----I~e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyFtd~lWPdF~~~dl~~Ai~~yq~R~RRf 243 (253)
T 3sgv_B 170 DQ----IDEEMLNQHVC--MHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRF 243 (253)
T ss_dssp GG----CCHHHHHTTST--TTTSCCCCEEEEESSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHHHC---
T ss_pred hh----CCHHHHHHhhc--ccCCCCCcEEEEecCCCcccCchHHHHcCEEEEECCCCCccCCHHHHHHHHHHHHhhhccC
Confidence 76 88999999998 46899999999999999999999999999999999986 9999999999999999999999
Q ss_pred CC
Q 025247 254 GK 255 (255)
Q Consensus 254 Gk 255 (255)
|+
T Consensus 244 G~ 245 (253)
T 3sgv_B 244 GG 245 (253)
T ss_dssp --
T ss_pred CC
Confidence 96
No 3
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=1.7e-52 Score=374.11 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=160.1
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh----
Q 025247 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN---- 122 (255)
Q Consensus 65 ~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~---- 122 (255)
++|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.++ ||+.+..
T Consensus 54 ~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~~~l~~ 133 (284)
T 2vg3_A 54 RLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRR 133 (284)
T ss_dssp TSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999863 278999999999999999999999996 999999875 5543321
Q ss_pred ------cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 025247 123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (255)
Q Consensus 123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~ 179 (255)
.+ .+|.. ..+..|.++++++||+|++||||+||++|+|++++++ +.|++++++
T Consensus 134 ~~~~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v-~~g~l~~~d--- 209 (284)
T 2vg3_A 134 RRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREV-AAGRLNPER--- 209 (284)
T ss_dssp HHHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHH-HTTSSCGGG---
T ss_pred HHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHH---
Confidence 11 12221 1234688999999999999999999999999998875 677888886
Q ss_pred ccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025247 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 180 ~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.|+++|+ +.++|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||++||+|+||||+
T Consensus 210 -I~e~~i~~~L~--t~~~PdPDLlIRTsGE~RLSnFLlWQ~aYsElyF~d~lWPdF~~~df~~Al~~Yq~R~RRfG~ 283 (284)
T 2vg3_A 210 -ITESTIARHLQ--RPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGS 283 (284)
T ss_dssp -CCHHHHHHHSS--STTCCCCSEEEECTTCCCCTTTTTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHSCCCSSC
T ss_pred -CCHHHHHHHhc--cCCCCCCcEEEeCCCCccccCCCchhhcceEEEECCCCCCcCCHHHHHHHHHHHhccCCCCCC
Confidence 78999999998 46899999999999999999999999999999999986 999999999999999999999996
No 4
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=3.9e-53 Score=372.21 Aligned_cols=184 Identities=20% Similarity=0.233 Sum_probs=145.8
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHH---HHHHHhhh---
Q 025247 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKE---SILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~---~l~~~l~~--- 122 (255)
.++|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.+ .||+.+..
T Consensus 13 ~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~ 92 (245)
T 2d2r_A 13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK 92 (245)
T ss_dssp -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence 3789999999999863 178999999999999999999999997 99999975 45543321
Q ss_pred -------cCC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025247 123 -------ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.++ +|.. ..+..|.++++++||+|++||||+||++|+|++++++. . ++++++
T Consensus 93 ~~~~~l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v~-~-~l~~~~-- 168 (245)
T 2d2r_A 93 DERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPP-S-NISLLE-- 168 (245)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCC-T-TGGGCS--
T ss_pred HHHHHHHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHH-h-cCChhh--
Confidence 111 2221 12345889999999999999999999999999988753 3 666665
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025247 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.++++|+ +.++|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+||+|+||||+
T Consensus 169 --I~e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~R~RRfG~ 242 (245)
T 2d2r_A 169 --SLENEISNRLD--TRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGE 242 (245)
T ss_dssp --CCHHHHHTTST--TTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC----
T ss_pred --CCHHHHHHHhc--cCCCCCCcEEEEcCCCccccCCcchhhcceEEEECCCCCCcCCHHHHHHHHHHHHhcCccCCC
Confidence 88999999998 46899999999999999999999999999999999986 999999999999999999999996
No 5
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=100.00 E-value=1.8e-52 Score=369.22 Aligned_cols=184 Identities=16% Similarity=0.229 Sum_probs=144.5
Q ss_pred CCC----CeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhh-
Q 025247 65 DKL----RYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN- 121 (255)
Q Consensus 65 ~~P----~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~- 121 (255)
++| +|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.++ ||+.+.
T Consensus 12 ~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~Lm~l~~~ 91 (253)
T 3qas_B 12 KLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVW 91 (253)
T ss_dssp -CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-----------------CT
T ss_pred CCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHHHHHHHH
Confidence 578 999999999963 178999999999999999999999997 999999865 444321
Q ss_pred ---h------cC-----------CCCch-h-----hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 025247 122 ---N------AT-----------LFEEA-G-----ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (255)
Q Consensus 122 ---~------~~-----------~~~~~-~-----~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~ 175 (255)
+ .+ .+|.. . .+..|.++++++||+|++||||+||++|+|++++++ +.|+++++
T Consensus 92 ~l~~~~~~l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~v-~~g~l~~~ 170 (253)
T 3qas_B 92 ALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQPD 170 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HTTSCCGG
T ss_pred HHHHHHHHHHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChH
Confidence 1 11 12221 1 234688999999999999999999999999998885 67788888
Q ss_pred ccccccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcC
Q 025247 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYG 254 (255)
Q Consensus 176 ~~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfG 254 (255)
+ ++++.++++|+ +.++|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||++||+|+||||
T Consensus 171 ~----I~e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~R~RRfG 244 (253)
T 3qas_B 171 Q----IDEEMLNQHVC--MHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFG 244 (253)
T ss_dssp G----CCHHHHHTTST--TTTSCCCCEEEECSSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHHHC----
T ss_pred H----CCHHHHHHhhc--cCCCCCCcEEEEcCCCccccCCchhhhcCEEEEECCCCCCcCCHHHHHHHHHHHhcCCcCCC
Confidence 6 78999999998 46899999999999999999999999999999999997 99999999999999999999999
Q ss_pred C
Q 025247 255 K 255 (255)
Q Consensus 255 k 255 (255)
+
T Consensus 245 ~ 245 (253)
T 3qas_B 245 G 245 (253)
T ss_dssp -
T ss_pred C
Confidence 6
No 6
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.3e-52 Score=367.77 Aligned_cols=185 Identities=17% Similarity=0.284 Sum_probs=161.7
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025247 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
.++|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.++ ||+.+..
T Consensus 22 ~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~ 101 (256)
T 4h8e_A 22 SNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLK 101 (256)
T ss_dssp TCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999974 189999999999999999999999997 999999875 5543321
Q ss_pred -------cCC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025247 123 -------ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.++ +|.. ..+..|.++++++||+|.+||||+||++|+|++++++ +.|.+++++
T Consensus 102 ~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v-~~g~l~~~~-- 178 (256)
T 4h8e_A 102 TFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDEL-HQQGLNSDI-- 178 (256)
T ss_dssp HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHH-HHTTCCGGG--
T ss_pred HHHHHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHH-HcCCCChhh--
Confidence 111 2221 1234688999999999999999999999999998886 667888886
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025247 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++|+.++++|+ +.+.|||||+|||||+.|||||||||++||||||++.+ |+|++.+|.+||.+||+|+||||+
T Consensus 179 --I~e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~dl~~Ai~~yq~R~RRfG~ 252 (256)
T 4h8e_A 179 --IDETYINNHLM--TKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGG 252 (256)
T ss_dssp --CCHHHHHTTST--TTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHCCCCTTC
T ss_pred --CCHHHHHHhCC--CCCCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccCCHHHHHHHHHHHHhhhhccCC
Confidence 88999999998 46899999999999999999999999999999999986 999999999999999999999996
No 7
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=100.00 E-value=1.4e-50 Score=350.44 Aligned_cols=176 Identities=18% Similarity=0.319 Sum_probs=151.3
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025247 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
+.+|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.++ ||+.+..
T Consensus 4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~ 83 (225)
T 3ugs_B 4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD 83 (225)
T ss_dssp CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999986 189999999999999999999999997 999999875 5544321
Q ss_pred -------cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025247 123 -------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.+ .+|.. ..++.|.++++++||+|.+||||+||++|+|+++ +.| +
T Consensus 84 ~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv----~~g----~--- 152 (225)
T 3ugs_B 84 EALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVI----EKK----L--- 152 (225)
T ss_dssp HHHHHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHH----HTT----C---
T ss_pred HHHHHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHH----Hhc----C---
Confidence 11 12221 1234689999999999999999999999999983 334 3
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025247 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
+++|+.++++|++ . |||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+||+|+||||+
T Consensus 153 -~I~e~~i~~~L~t---~-PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~~l~~Ai~~y~~R~RRfG~ 225 (225)
T 3ugs_B 153 -ELNEENLTQNLDL---P-LDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRERTFGK 225 (225)
T ss_dssp -CCSHHHHHHTSSS---C-SCCSEEEEESSCCSCTTSSTTTTTTCEEEEECSCSTTCCHHHHHHHHHHHHHSCCCTTC
T ss_pred -cCCHHHHHHhcCC---C-CCCCEEEEeCCcccccCcchhhhhceEEEECCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 3899999999984 3 9999999999999999999999999999999986 999999999999999999999996
No 8
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=5.1e-50 Score=349.53 Aligned_cols=182 Identities=18% Similarity=0.294 Sum_probs=153.3
Q ss_pred CCCCeEEEEeeCCCC---------------CChHHHHHHHHHHHHcCCCEEEEEec-ccCccccHHH---HHHHhhh---
Q 025247 65 DKLRYLAIVIESEEA---------------YHIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 65 ~~P~HLavI~d~~~~---------------~~~~~l~~l~~Wc~~~GI~~lSlYd~-~g~lkr~~~~---l~~~l~~--- 122 (255)
++|+|||||||||++ .|++++.+++.||.++||++||+|+| +|||||+.++ ||+.+..
T Consensus 1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE 80 (227)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence 579999999999862 26899999999999999999999999 5999999875 5554432
Q ss_pred -----cCC-----------CCch-h-----hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccccc
Q 025247 123 -----ATL-----------FEEA-G-----ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (255)
Q Consensus 123 -----~~~-----------~~~~-~-----~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~ 180 (255)
.+. +|.. . .+..|.++++++|++|++||||++|++|+|++++++ +.|++++++....
T Consensus 81 ~~~~~~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v-~~g~l~~~~~~~~ 159 (227)
T 2vg0_A 81 EICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKE-LANGATAEELVDA 159 (227)
T ss_dssp HHTCTTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred HHhccccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChhHhhcc
Confidence 111 1211 0 124588999999999999999999999999998886 6678887752223
Q ss_pred cCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCC-CCCCCHHHHHHHHHHHhhh
Q 025247 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGR-LKSMRYGSLLKAIYKFTMV 249 (255)
Q Consensus 181 ~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~-~~~~~~~~f~~aL~~ys~~ 249 (255)
++++.++++|++ .++|||||+|||||+.|||||||||++||||||+++ ||+|++.+|.+||++||+|
T Consensus 160 I~e~~i~~~L~t--~~~pdpDLlIRTsGe~RLSnFLlWQ~aysElyf~~~lWPdF~~~~~~~Al~~y~~R 227 (227)
T 2vg0_A 160 VTVEGISENLYT--SGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR 227 (227)
T ss_dssp CCHHHHHHHSTT--TTSCCCSEEEECTTCCCCTTTTTTTTTTCEEEECSSCGGGCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHhhcc--CCCCCCcEEEEcCCCccccCcchHHHcCeEEEECCCCCCCCCHHHHHHHHHHHhcC
Confidence 679999999984 689999999999999999999999999999999998 5999999999999999975
No 9
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=61.17 E-value=10 Score=30.13 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=28.9
Q ss_pred EEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccc
Q 025247 145 FASFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (255)
Q Consensus 145 lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~ 177 (255)
.....|.+++|.++++.|+.++.+.++++++|+
T Consensus 39 tTve~Nt~e~I~~At~ELl~eii~~N~l~~eDI 71 (148)
T 1xho_A 39 TTVSDNTADEIVAETQKLLKEMAEKNGLEEDDI 71 (148)
T ss_dssp EECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred eEcCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 445689999999999999999988889998874
No 10
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=54.46 E-value=12 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=27.4
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCcccc
Q 025247 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (255)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~ 177 (255)
...|.+++|.++++.|+.++.+.++++++|+
T Consensus 12 v~~Nt~e~I~~at~eLl~~i~~~N~l~~~dI 42 (127)
T 1dbf_A 12 VERDTEEEILQKTKQLLEKIIEENHTKPEDV 42 (127)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 4578999999999999999988888988874
No 11
>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur genomics/proteomics initiative, RSGI, structural genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP: d.79.1.2 PDB: 1ode_A* 1ui9_A*
Probab=51.94 E-value=15 Score=28.26 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=27.1
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCc-ccc
Q 025247 147 SFPDGKEAVAKAANLLFMKYVKLGGSGK-IQE 177 (255)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~~~~~~~~~~~-~~~ 177 (255)
...|.+++|.++++.|+.++.+.+++++ +|+
T Consensus 11 v~~n~~e~I~~at~eLl~~i~~~N~l~~~~di 42 (122)
T 1ufy_A 11 VEEDTPEAIHQATRELLLKMLEANGIQSYEEL 42 (122)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHTCCCGGGE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCChHhE
Confidence 4578999999999999999888888888 774
No 12
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=41.47 E-value=83 Score=27.32 Aligned_cols=53 Identities=9% Similarity=0.057 Sum_probs=38.4
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025247 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 65 ~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
..+++||+|+-|++..+..-+..-..-|.+.|| ...|.+.... +.+++.+.+.
T Consensus 25 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi--~~~~~lp~~~--s~~ell~~I~ 77 (276)
T 3ngx_A 25 GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI--AVDLEKYDDI--SMKDLLKRID 77 (276)
T ss_dssp TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSC--CHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe--EEEEECCCCC--CHHHHHHHHH
Confidence 556699999999986566677888899999999 6677765433 3455555543
No 13
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=38.45 E-value=64 Score=22.77 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcC
Q 025247 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVG 194 (255)
Q Consensus 151 Gr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~ 194 (255)
.|++.++++....-.++++|.+.. .++|+.+-+.|..+.
T Consensus 31 vKPe~A~~VE~~Li~lAq~Gqi~~-----ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 31 TRPDFVEQIELQLIQLAQMGRVRS-----KITDEQLKELLKRVA 69 (80)
T ss_dssp TCHHHHHHHHHHHHHHHHCCSSCC-----CCCHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCC-----CcCHHHHHHHHHHHc
Confidence 478899999888888899999854 489999999998653
No 14
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=35.10 E-value=39 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEE
Q 025247 80 YHIPAVIQLLQWLVDIGVKHVCLY 103 (255)
Q Consensus 80 ~~~~~l~~l~~Wc~~~GI~~lSlY 103 (255)
-.+..+.+++.-|..+|+..+++=
T Consensus 68 ~~y~~vv~vmd~l~~aG~~~v~l~ 91 (99)
T 2pfu_A 68 VDYETLMKVMDTLHQAGYLKIGLV 91 (99)
T ss_dssp CCHHHHHHHHHHHHHTCCCCEECT
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEE
Confidence 378999999999999999998873
No 15
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=33.30 E-value=27 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=31.6
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcCCCCCCCcE
Q 025247 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (255)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~~~~pePDL 202 (255)
+.+-+-.++.+-+|+|...+.. |+ ++.+++...|+......|.|.|
T Consensus 34 s~~~~spev~~~Vr~LVq~Ll~-~~---------i~~EeFt~~Lq~~lns~pqP~L 79 (114)
T 2p6v_A 34 SSGXQSTETAANVXELVQNLLD-GX---------IEAEDFTSRLYRELNSSPQPYL 79 (114)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHT-TS---------SCHHHHHHHHHHHTTCCCCTTH
T ss_pred hccccChHHHHHHHHHHHHHHH-cc---------CCHHHHHHHHHHHHcCCCCcch
Confidence 3344678899999999888643 34 5666777777765555676665
No 16
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=32.91 E-value=53 Score=24.45 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcCCCCCCCcE
Q 025247 152 KEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (255)
Q Consensus 152 r~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~~~~pePDL 202 (255)
-+++.+-+|+|...+. .|+ ++.+++...|+......|-|.|
T Consensus 24 ~pev~~~Vr~LVq~Ll-~~~---------i~~EeFt~~Lq~~lns~pqP~l 64 (105)
T 2h7b_A 24 SPEIGERVRTLVLGLV-NST---------LTIEEFHSKLQEATNFPLRPFV 64 (105)
T ss_dssp CHHHHHHHHHHHHHHH-TSS---------CCHHHHHHHHHHHSSSSCCSSS
T ss_pred ChHHHHHHHHHHHHHH-hCC---------CCHHHHHHHHHHHhcCCCCcch
Confidence 4678888999988764 334 5667777777765555666654
No 17
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=32.18 E-value=72 Score=22.60 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhc
Q 025247 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAV 193 (255)
Q Consensus 151 Gr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~ 193 (255)
.|++.++++....-.++++|.+.. .++|+.+-+.|..+
T Consensus 29 vKPe~A~~VE~~Li~lAq~Gqi~~-----ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 29 VRRDRAQAVETYLKKLIATNNVTH-----KITEAEIVSILNGI 66 (81)
T ss_dssp HCHHHHHHHHHHHHHHHHHTCCSC-----CBCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCC-----CcCHHHHHHHHHHH
Confidence 367888898888788889999854 48999998888753
No 18
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=31.26 E-value=92 Score=27.45 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=37.4
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025247 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 65 ~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
..+++||+|+-|++..+..-+..-..-|.+.||....+ .+...- ..++|.+.+.
T Consensus 51 g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~-~lp~~~--se~ell~~I~ 104 (303)
T 4b4u_A 51 GRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKI-ELPQET--TTEQLLAEIE 104 (303)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEE-EECTTC--CHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE-ecCccC--CHHHHHHHHH
Confidence 45679999999998655666788888999999987654 433221 3455555544
No 19
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=27.24 E-value=91 Score=17.71 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=16.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 025247 11 YSWACQIGNLGLWIIWLLIHF 31 (255)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~h~ 31 (255)
.+..++|-+.+|...|++=|+
T Consensus 8 lsi~sfilsalhf~awtighl 28 (33)
T 2kix_A 8 LSISSFILSALHFIAWTIGHL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455678888899999988885
No 20
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=22.44 E-value=1.7e+02 Score=25.68 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=36.7
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025247 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|+-|++..+..-+..-..-|.+.||....+ .+.... ..++|.+.+.
T Consensus 36 ~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~-~lp~~~--s~~ell~~I~ 88 (300)
T 4a26_A 36 RVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNV-ELPEDI--SQEVLEVNVE 88 (300)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEE-EECTTC--CHHHHHHHHH
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE-ECCCCC--CHHHHHHHHH
Confidence 5669999999988656667788889999999987544 443222 2445555443
No 21
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=22.40 E-value=1.7e+02 Score=22.13 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcC
Q 025247 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVG 194 (255)
Q Consensus 151 Gr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~ 194 (255)
-|++.++++...+-.++++|.+.. .++|+.+-+.|..+.
T Consensus 61 VKPEkA~~VE~~LI~lAq~Gqi~~-----kItee~Lk~lL~~i~ 99 (118)
T 2cru_A 61 VKPEKTKAVENYLIQMARYGQLSE-----KVSEQGLIEILKKVS 99 (118)
T ss_dssp HCHHHHHHHHHHHHHHHHHTCCCS-----CBCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCC-----CcCHHHHHHHHHHHH
Confidence 368888999888788889999854 489999999988653
No 22
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=21.96 E-value=1.6e+02 Score=22.57 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=29.8
Q ss_pred eEEEE-eeCCCCC---ChHHHHHHHHHHHHcCCCEEEEEecccCc
Q 025247 69 YLAIV-IESEEAY---HIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (255)
Q Consensus 69 HLavI-~d~~~~~---~~~~l~~l~~Wc~~~GI~~lSlYd~~g~l 109 (255)
+|+.+ ++.+-++ +-+-+..++.|+.+.|++.|.+....+|.
T Consensus 121 ei~~~~v~~~~~g~Gig~~ll~~l~~~a~~~g~~~i~l~v~~~N~ 165 (209)
T 3pzj_A 121 EIGHVNFSPALRRTRLATEAVFLLLKTAFELGYRRCEWRCDSRNA 165 (209)
T ss_dssp EEEEEEECTTTTTSHHHHHHHHHHHHHHHHTTCSEEEEEEETTCH
T ss_pred EEEEEEECHHHhcCCHHHHHHHHHHHHHHHcCCcEEEEeecCCCH
Confidence 45554 5544332 56778899999999999999999877664
No 23
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=21.08 E-value=1.9e+02 Score=25.15 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=36.3
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHh
Q 025247 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120 (255)
Q Consensus 65 ~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l 120 (255)
..+++||+|+-|++..+..-+..-..-|.+.||....+ .+.... ..++|.+.+
T Consensus 33 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~-~lp~~~--s~~ell~~I 85 (286)
T 4a5o_A 33 LRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAY-DLPAET--SQDDLLALI 85 (286)
T ss_dssp CCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEE-EECTTC--CHHHHHHHH
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE-ECCCCC--CHHHHHHHH
Confidence 45569999999988655566788889999999987544 333222 244555444
No 24
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=20.92 E-value=1.8e+02 Score=25.28 Aligned_cols=54 Identities=9% Similarity=0.096 Sum_probs=36.7
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025247 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 65 ~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
..+++||+|+-|++..+..-+..-..-|.+.||....+ .+.... ..++|.+.+.
T Consensus 32 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~-~lp~~~--s~~ell~~I~ 85 (285)
T 3l07_A 32 AITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVI-TLPEHT--TESELLELID 85 (285)
T ss_dssp CCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEE-EECTTC--CHHHHHHHHH
T ss_pred CCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEE-ECCCCC--CHHHHHHHHH
Confidence 34569999999998656666788889999999987544 333222 2445555443
No 25
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=20.14 E-value=1.9e+02 Score=25.08 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=36.3
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHh
Q 025247 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l 120 (255)
..++||+|+-|++..+..-+..-..-|.+.||....+ .+.+.. ..++|.+.+
T Consensus 31 ~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~-~lp~~~--s~~ell~~i 82 (281)
T 2c2x_A 31 RTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRR-DLPADI--STATLNETI 82 (281)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEE-EECTTC--CHHHHHHHH
T ss_pred CCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEE-ECCCCC--CHHHHHHHH
Confidence 4469999999988656666788888999999987654 444322 244555544
Done!