BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025248
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5J9|Y5483_ARATH Uncharacterized GTP-binding protein At5g64813 OS=Arabidopsis
thaliana GN=At5g64813 PE=1 SV=1
Length = 342
Score = 350 bits (897), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 177/234 (75%), Positives = 199/234 (85%), Gaps = 8/234 (3%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 89
+GVIFVHDLSQRRTKTSLQKWA E+A +GTFSAPL SGGPGGLPVPY+V+GNKAD+AAKE
Sbjct: 109 NGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLPSGGPGGLPVPYIVVGNKADIAAKE 168
Query: 90 GTRGSSGNLVDAARQWVEKQGLLP-SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148
GT+GSSGNLVDAAR WVEKQGLLP SSE+LPL ESFPG GGLIAAAKE RYDKEA+ KFF
Sbjct: 169 GTKGSSGNLVDAARHWVEKQGLLPSSSEDLPLFESFPGNGGLIAAAKETRYDKEALNKFF 228
Query: 149 RMLIRRRYFSDEMPAPNPWSISPT-HKPIQRLDENSSDDDKFYS-SGYSSDPY---NMLP 203
RMLIRRRYFSDE+PA +PWSISP QRLDE +SDDD+FY + + DPY N +P
Sbjct: 229 RMLIRRRYFSDELPAASPWSISPVPTSSSQRLDEITSDDDQFYKRTSFHGDPYKYNNTIP 288
Query: 204 PLPAQRNLTPPPTLYPQQPVSVQENYNLPRFSLTGSQEISS--SARSKRTDINV 255
PLPAQRNLTPPPTLYPQQPVS +NY +PR+SL+ QE ++ SARSKR DINV
Sbjct: 289 PLPAQRNLTPPPTLYPQQPVSTPDNYTIPRYSLSSVQETTNNGSARSKRMDINV 342
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 2 FWKERERENKELNGGPPTGQVRVLVVGDSGV 32
FW+ERERENKE P GQVRVLVVGDSGV
Sbjct: 3 FWRERERENKEQILAPLCGQVRVLVVGDSGV 33
>sp|Q6IML7|DJC27_RAT DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27
PE=2 SV=1
Length = 273
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 22/114 (19%)
Query: 6 RERENK----ELNGGPPTGQVRVLVVGDS-GVIFVHDLSQRRTKTSLQKWAVEIATSGTF 60
R+RE K ++ G P +VR D+ GVI V+D+ Q+ + +L W E+
Sbjct: 61 RDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQ---- 116
Query: 61 SAPLASGGPGG--LPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 112
GP G + +VV NK D + S G L W E +G L
Sbjct: 117 -----ELGPHGNMENIVFVVCANKIDCSKHRCIDESEGRL------WAESRGFL 159
>sp|Q8CFP6|DJC27_MOUSE DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27 PE=2
SV=1
Length = 273
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 22/114 (19%)
Query: 6 RERENK----ELNGGPPTGQVRVLVVGDS-GVIFVHDLSQRRTKTSLQKWAVEIATSGTF 60
R+RE K ++ G P +VR D+ GVI V+D+ Q+ + +L W E+
Sbjct: 61 RDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQ---- 116
Query: 61 SAPLASGGPGGL--PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 112
GP G + +VV NK D + S G L W E +G L
Sbjct: 117 -----ELGPHGNMDNIVFVVCANKIDCSKHRCIDESEGRL------WAESKGFL 159
>sp|Q6IMM1|DJC27_CHICK DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2
SV=1
Length = 273
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 22/114 (19%)
Query: 6 RERENK----ELNGGPPTGQVRVLVVGDS-GVIFVHDLSQRRTKTSLQKWAVEIATSGTF 60
R+RE K ++ G P +VR D+ GVI V+D+ Q+ + +L W E+
Sbjct: 61 RDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQ---- 116
Query: 61 SAPLASGGPGGL--PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 112
GP G + +VV NK D S G L W E +G L
Sbjct: 117 -----ELGPHGNMDNIVFVVCANKIDCTKHRSVDESEGRL------WAESRGFL 159
>sp|Q5HYI8|RABL3_HUMAN Rab-like protein 3 OS=Homo sapiens GN=RABL3 PE=1 SV=1
Length = 236
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 29/142 (20%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVE-----------IATSGTFSAPLASGGPGGLPVPYVV 78
+G+IFVHDL+ +++ +L++W++E + T+G + + +P +V
Sbjct: 89 NGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVTNGDYDQEQFADN----QIPLLV 144
Query: 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 138
IG K D E R R + P L T G A K +R
Sbjct: 145 IGTKLD-QIHETKRHEV-----LTRTAFLAEDFNPEEINLDCTNPRYLAAGSSNAVKLSR 198
Query: 139 YDKEAVMKFFRMLIRRRYFSDE 160
FF +I +RYF E
Sbjct: 199 --------FFDKVIEKRYFLRE 212
>sp|Q9FGK5|RAA5A_ARATH Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2
SV=1
Length = 221
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G G + V+D+S+R+T S+ +W E+ T + V +++GNK+D+
Sbjct: 86 GAVGALLVYDISRRQTFHSIGRWLNELHT------------HSDMNVVTILVGNKSDLKD 133
Query: 88 KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 147
+ G + E QGL E+ +AAA E V +
Sbjct: 134 LREVSTAEG------KALAEAQGLF-------FMETSALDSSNVAAAFET-----VVKEI 175
Query: 148 FRMLIRRRYFSDEMPAPNPWSISPTHKPI 176
+ +L R+ S E+ +P S+S K +
Sbjct: 176 YNILSRKVMSSQELNKQDPASLSNGKKVV 204
>sp|Q6IMK3|DJC27_DANRE DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2
SV=1
Length = 273
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 6 RERENK----ELNGGPPTGQVRVLVVGDS-GVIFVHDLSQRRTKTSLQKWAVEIATSGTF 60
R+RE K ++ G P +VR DS GVI V+D+ R + +L W E+
Sbjct: 61 RDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGS 120
Query: 61 SAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL 111
A + + + +VV NK D+ + S G L W E +G
Sbjct: 121 QANMEN-------IIFVVCANKVDLTKRRVVDESEGRL------WAESRGF 158
>sp|Q9D4V7|RABL3_MOUSE Rab-like protein 3 OS=Mus musculus GN=Rabl3 PE=2 SV=1
Length = 236
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 31/143 (21%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVEIATSGTF-SAPLASGGP------GGLPVPYVVIGNK 82
+G+I VHDL+ +++ +L +W++E+ + L + G +P +VIG K
Sbjct: 89 NGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQIPLLVIGTK 148
Query: 83 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLP---SSEELPLTESFP--GGGGLIAAAKEA 137
D E R + + + L ++EE+ L + P G A K +
Sbjct: 149 LD-QIHETKR----------HEVLIRTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLS 197
Query: 138 RYDKEAVMKFFRMLIRRRYFSDE 160
R FF +I +RYF E
Sbjct: 198 R--------FFDKVIEKRYFFRE 212
>sp|Q20365|RAB33_CAEEL Ras-related protein Rab-33 OS=Caenorhabditis elegans GN=rab-33 PE=2
SV=1
Length = 307
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
+ V+FV+D++ R + L W E G G VP ++IGNK DV
Sbjct: 175 NAVVFVYDVTCRESFNDLALWIKECEKHGLV---------GDSEVPRILIGNKCDVEC 223
>sp|P09648|CATL1_CHICK Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1
Length = 218
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLT 121
N D + EG +G +G L+D A Q+V+ G + S E P T
Sbjct: 52 NLVDCSRPEGNQGCNGGLMDQAFQYVQDNGGIDSEESYPYT 92
>sp|O04157|RAG3B_ARATH Ras-related protein RABG3b OS=Arabidopsis thaliana GN=RABG3B PE=1
SV=1
Length = 203
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 21/104 (20%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G + V+D++ ++ SL W E T + P+A P++++GNK D+
Sbjct: 80 GADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMA--------FPFILLGNKVDI-- 129
Query: 88 KEGTRGSSGNLVD--AARQWVEKQGLL-----PSSEELPLTESF 124
G + +V AR+W ++G + + E+ + +SF
Sbjct: 130 ----DGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSF 169
>sp|Q9XI98|RAG3E_ARATH Ras-related protein RABG3e OS=Arabidopsis thaliana GN=RABG3E PE=2
SV=1
Length = 206
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G + V+D++ ++ L W E + S P P+VVIGNK DV
Sbjct: 80 GADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPE--------NFPFVVIGNKIDV-- 129
Query: 88 KEGTRGSSGNLVD--AARQWVEKQGLLPSSE 116
G S +V AR W +G +P E
Sbjct: 130 ----DGGSSRVVSEKKARAWCASKGNIPYYE 156
>sp|Q32LJ6|RABL3_BOVIN Rab-like protein 3 OS=Bos taurus GN=RABL3 PE=2 SV=2
Length = 236
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 39/144 (27%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVE-----------IATSGTFSAPLASGGPGGLPVPYVV 78
+G+I VHDL+ +++ +L +W++E + T+G + + +P +V
Sbjct: 89 NGIILVHDLTNKKSSQNLYRWSLEALNRDLVPTGVLVTNGDYDREQFADN----QIPLLV 144
Query: 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP---SSEELPLTESFPG--GGGLIAA 133
IG K D E R + + + L ++EE+ L + P G A
Sbjct: 145 IGTKLD-QIHENKR----------HEVLTRTAFLAEDFNAEEINLDCTNPRYLAAGSSNA 193
Query: 134 AKEARYDKEAVMKFFRMLIRRRYF 157
K +R FF +I +RYF
Sbjct: 194 VKLSR--------FFDKVIEKRYF 209
>sp|Q8SS11|GSP1_ENCCU GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=GSP1 PE=1 SV=1
Length = 214
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 83
V +G SG IF D++ R T +L +W E F A + G P VV NK
Sbjct: 76 VYYIGASGAIFFFDVTSRITCQNLARWVKE------FQAVV------GNEAPIVVCANKI 123
Query: 84 DVAAKE 89
D+ ++
Sbjct: 124 DIKNRQ 129
>sp|Q5ZKR4|RABL3_CHICK Rab-like protein 3 OS=Gallus gallus GN=RABL3 PE=2 SV=1
Length = 230
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVE-----------IATSGTFSAPLASGGPGGLPVPYVV 78
+G+I VHDL+ +++ +L +W++E + T+G + + +P +V
Sbjct: 89 NGIILVHDLTNKKSSQNLYRWSLEALNRDVAPTGVLVTNGDYDREQFADN----QIPLLV 144
Query: 79 IGNKAD 84
IG K D
Sbjct: 145 IGTKLD 150
>sp|P34443|RHEB1_CAEEL GTP-binding protein Rheb homolog 1 OS=Caenorhabditis elegans
GN=rheb-1 PE=3 SV=1
Length = 207
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 70 GGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESF 124
G +P V++GNK D++ + R G + ARQW K + + E + E F
Sbjct: 115 GDTSIPIVIVGNKTDLSTQRVVRAEEGE--ELARQWDAKFVEITARESNRVHEVF 167
>sp|Q6GPS4|RABL3_XENLA Rab-like protein 3 OS=Xenopus laevis GN=rabl3 PE=2 SV=1
Length = 235
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVE-----------IATSGTFSAPLASGGPGGLPVPYVV 78
+G+I VHDL+ +++ +L +W++E + T+G + + +P +V
Sbjct: 89 NGIILVHDLTNKKSSQNLYRWSLEALNRDLQPMGVLVTNGDYDREQFADN----QIPLLV 144
Query: 79 IGNKAD 84
IG K D
Sbjct: 145 IGTKLD 150
>sp|A4IHM6|RABL3_XENTR Rab-like protein 3 OS=Xenopus tropicalis GN=rabl3 PE=2 SV=1
Length = 235
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 15/66 (22%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVE-----------IATSGTFSAPLASGGPGGLPVPYVV 78
+G+I VHDL+ +++ +L +W++E + T+G + + +P +V
Sbjct: 89 NGIILVHDLTNKKSSQNLYRWSLEALNRDLQPTGVLVTNGDYDREQFADN----QIPLLV 144
Query: 79 IGNKAD 84
IG K D
Sbjct: 145 IGTKLD 150
>sp|Q5R8Z8|RAB14_PONAB Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3
Length = 215
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G +G + V+D+++R T L W + + + P ++IGNKAD+ A
Sbjct: 83 GAAGALMVYDITRRSTYNHLSSW---LTDARNLTNP---------NTVIILIGNKADLEA 130
Query: 88 KEGTRGSSGNLVDAARQWVEKQGLL 112
+ + A+Q+ E+ GLL
Sbjct: 131 QRDV------TYEEAKQFAEENGLL 149
>sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3
Length = 215
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G +G + V+D+++R T L W + + + P ++IGNKAD+ A
Sbjct: 83 GAAGALMVYDITRRSTYNHLSSW---LTDARNLTNP---------NTVIILIGNKADLEA 130
Query: 88 KEGTRGSSGNLVDAARQWVEKQGLL 112
+ + A+Q+ E+ GLL
Sbjct: 131 QRDV------TYEEAKQFAEENGLL 149
>sp|P61106|RAB14_HUMAN Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4
Length = 215
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G +G + V+D+++R T L W + + + P ++IGNKAD+ A
Sbjct: 83 GAAGALMVYDITRRSTYNHLSSW---LTDARNLTNP---------NTVIILIGNKADLEA 130
Query: 88 KEGTRGSSGNLVDAARQWVEKQGLL 112
+ + A+Q+ E+ GLL
Sbjct: 131 QRDV------TYEEAKQFAEENGLL 149
>sp|Q5ZKU5|RAB14_CHICK Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3
Length = 215
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G +G + V+D+++R T L W + + + P ++IGNKAD+ A
Sbjct: 83 GAAGALMVYDITRRSTYNHLSSW---LTDARNLTNP---------NTVIILIGNKADLEA 130
Query: 88 KEGTRGSSGNLVDAARQWVEKQGLL 112
+ + A+Q+ E+ GLL
Sbjct: 131 QRDV------TYEEAKQFAEENGLL 149
>sp|P61107|RAB14_RAT Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=1 SV=3
Length = 215
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G +G + V+D+++R T L W + + + P ++IGNKAD+ A
Sbjct: 83 GAAGALMVYDITRRSTYNHLSSW---LTDARNLTNP---------NTVIILIGNKADLEA 130
Query: 88 KEGTRGSSGNLVDAARQWVEKQGLL 112
+ + A+Q+ E+ GLL
Sbjct: 131 QRDV------TYEEAKQFAEENGLL 149
>sp|Q52NJ6|RAB14_PIG Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3
Length = 215
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G +G + V+D+++R T L W + + + P ++IGNKAD+ A
Sbjct: 83 GAAGALMVYDITRRSTYNHLSSW---LTDARNLTNP---------NTVIILIGNKADLEA 130
Query: 88 KEGTRGSSGNLVDAARQWVEKQGLL 112
+ + A+Q+ E+ GLL
Sbjct: 131 QRDV------TYEEAKQFAEENGLL 149
>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1
Length = 205
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G GVI V+D+++R T T L+ W E+ T T + + +++GNK D
Sbjct: 80 GAQGVILVYDVTKRDTFTKLENWLNELETYCTRN-----------DLVKMLVGNKIDKDN 128
Query: 88 KEGTR 92
+E R
Sbjct: 129 REVDR 133
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1
Length = 207
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 33/126 (26%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV-- 85
G + V+D++ ++ +L W E T S P P+VV+GNK DV
Sbjct: 80 GADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPE--------NFPFVVLGNKIDVDG 131
Query: 86 --------------AAKEG------TRGSSGNLVDAARQWVEKQGLLPSSEE---LPLTE 122
A +G T G VD A Q + K L EE LP T
Sbjct: 132 GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNEPEEEIYLPDTI 191
Query: 123 SFPGGG 128
GGG
Sbjct: 192 DVAGGG 197
>sp|Q6TNS7|RABL3_DANRE Rab-like protein 3 OS=Danio rerio GN=rabl3 PE=2 SV=1
Length = 233
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 30 SGVIFVHDLSQRRTKTSLQKWAVE-IATSGTFSAPLASGGP------GGLPVPYVVIGNK 82
+G+I VHDL+ +++ +L +W++E ++ + + + S G VP ++IG K
Sbjct: 89 NGIILVHDLTNKKSSQNLYRWSLEALSKDSSPTGIIVSNGDYDREQFAENAVPLLLIGTK 148
Query: 83 AD 84
D
Sbjct: 149 FD 150
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1
Length = 207
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G + VHD++ ++ +L W E + S P P+VV+GNK DV
Sbjct: 80 GADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPE--------NFPFVVLGNKVDV-- 129
Query: 88 KEGTRGSSGNLVD--AARQWVEKQGLLPSSE 116
G + +V A+ W +G +P E
Sbjct: 130 ----DGGNSRVVSEKKAKAWCASKGNIPYFE 156
>sp|P07711|CATL1_HUMAN Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2
Length = 333
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELP 119
N D + +G G +G L+D A Q+V+ G L S E P
Sbjct: 165 NLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 203
>sp|Q89AC9|TYPA_BUCBP GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=typA PE=3 SV=2
Length = 611
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Query: 191 SSGYSSDPYN--MLPPLPAQRNLTPPPTLYPQQPVSVQ------ENY-------NLPRFS 235
+SG S + N M+P A TPPPT+YP P +Q +NY + + S
Sbjct: 175 TSGVSYNHMNPDMIPLYNAIVKYTPPPTVYPNCPFQMQISQLDYDNYLGIIGIGRINKGS 234
Query: 236 LTGSQEIS--SSARSKRT 251
+T +Q IS ++ KRT
Sbjct: 235 VTSNQSISIINNTEVKRT 252
>sp|A5GPA1|MNME_SYNPW tRNA modification GTPase MnmE OS=Synechococcus sp. (strain WH7803)
GN=mnmE PE=3 SV=1
Length = 460
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 73 PVPYVVIGNKADVAAKEGTRGSSGNLVD 100
VP++++GNK DVA + G+SG+ D
Sbjct: 333 AVPHLLVGNKVDVAVSDARAGTSGSAAD 360
>sp|Q95UJ0|RAB7A_PAROT Ras-related protein Rab-7a OS=Paramecium octaurelia GN=Rab7a PE=1
SV=2
Length = 206
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87
G + V+D++ ++ SL W E G P P+VV+GNK D A
Sbjct: 80 GADCCVLVYDITNPKSFDSLDSWRDEFLMQGQPKDPE--------HFPFVVLGNKLDKAT 131
Query: 88 KEGTRGSSGNLVDAARQWVEKQG 110
+ + S A+QW + G
Sbjct: 132 ERKVQESK------AQQWCKSHG 148
>sp|Q9GKL8|CATL1_CHLAE Cathepsin L1 OS=Chlorocebus aethiops GN=CTSL1 PE=1 SV=1
Length = 333
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELP 119
N D + +G G +G L+D A Q+V G L S E P
Sbjct: 165 NLVDCSGPQGNEGCNGGLMDYAFQYVADNGGLDSEESYP 203
>sp|Q9QYC1|PCX1_MOUSE Pecanex-like protein 1 OS=Mus musculus GN=Pcnx PE=2 SV=3
Length = 2344
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 140
+K+D+ AKEG +L+ A Q + + S LP +FP G AA A+
Sbjct: 722 SKSDLEAKEGEVLDELSLLGRASQL---ETVTRSRNSLPSQVAFPEGEEQDAATGAAQAS 778
Query: 141 KEAVM------KFFRMLIRRRYFSDEMPAP 164
+EAV F R +RRR+ + P P
Sbjct: 779 EEAVAFRRERSTFRRQAVRRRHNAGSNPTP 808
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,918,787
Number of Sequences: 539616
Number of extensions: 4865203
Number of successful extensions: 12314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 12288
Number of HSP's gapped (non-prelim): 70
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)