Query 025248
Match_columns 255
No_of_seqs 288 out of 1177
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00023 GTP-binding protein; 100.0 1.4E-62 3E-67 457.4 19.4 245 2-255 87-334 (334)
2 KOG0084 GTPase Rab1/YPT1, smal 99.9 1.4E-24 2.9E-29 189.1 9.9 115 2-156 62-176 (205)
3 KOG0078 GTP-binding protein SE 99.9 1.8E-24 3.9E-29 189.7 9.1 113 2-155 65-177 (207)
4 KOG0092 GTPase Rab5/YPT51 and 99.9 2.6E-24 5.6E-29 186.7 9.5 115 2-157 58-172 (200)
5 KOG0098 GTPase Rab2, small G p 99.9 3.9E-24 8.4E-29 185.4 8.2 121 2-163 59-179 (216)
6 KOG0087 GTPase Rab11/YPT3, sma 99.9 4.3E-23 9.3E-28 181.4 11.3 113 2-155 67-179 (222)
7 KOG0088 GTPase Rab21, small G 99.9 6.3E-23 1.4E-27 174.5 9.7 128 2-172 66-193 (218)
8 KOG0394 Ras-related GTPase [Ge 99.9 2.5E-22 5.5E-27 173.7 10.8 120 2-155 62-181 (210)
9 cd04121 Rab40 Rab40 subfamily. 99.9 4.8E-22 1E-26 171.5 10.6 112 2-155 59-170 (189)
10 KOG0093 GTPase Rab3, small G p 99.9 3E-22 6.5E-27 168.5 7.9 114 2-156 74-187 (193)
11 KOG0080 GTPase Rab18, small G 99.9 3.8E-22 8.1E-27 170.0 7.8 120 2-161 64-183 (209)
12 cd04133 Rop_like Rop subfamily 99.9 1.1E-21 2.4E-26 167.3 10.7 112 2-152 53-173 (176)
13 cd04120 Rab12 Rab12 subfamily. 99.9 2.8E-21 6.1E-26 168.6 12.6 112 2-154 53-165 (202)
14 KOG0091 GTPase Rab39, small G 99.9 1.2E-21 2.6E-26 167.3 8.8 116 2-156 62-177 (213)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 2.5E-21 5.4E-26 165.8 10.2 112 2-152 57-180 (182)
16 cd04131 Rnd Rnd subfamily. Th 99.8 3.9E-21 8.4E-26 163.6 10.6 112 2-152 53-176 (178)
17 cd01875 RhoG RhoG subfamily. 99.8 9.8E-21 2.1E-25 161.9 10.5 113 2-153 55-178 (191)
18 cd01873 RhoBTB RhoBTB subfamil 99.8 1.1E-20 2.4E-25 163.6 10.6 107 2-150 70-194 (195)
19 KOG0079 GTP-binding protein H- 99.8 4.6E-21 1E-25 161.6 7.9 112 2-155 61-172 (198)
20 PTZ00099 rab6; Provisional 99.8 2.6E-20 5.6E-25 158.9 12.6 115 2-157 33-147 (176)
21 KOG0086 GTPase Rab4, small G p 99.8 4.8E-21 1E-25 162.4 7.4 114 2-156 62-175 (214)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2E-20 4.4E-25 167.0 11.8 115 2-155 65-191 (232)
23 KOG0083 GTPase Rab26/Rab37, sm 99.8 3.1E-21 6.8E-26 160.5 5.7 114 2-156 51-164 (192)
24 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.2E-20 2.7E-25 164.6 8.5 112 2-153 75-186 (221)
25 cd04103 Centaurin_gamma Centau 99.8 4.5E-20 9.8E-25 153.8 9.9 107 2-150 51-157 (158)
26 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.4E-19 2.9E-24 155.4 12.7 118 2-155 54-171 (201)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 6.7E-20 1.5E-24 154.1 10.5 114 2-155 54-167 (172)
28 cd04122 Rab14 Rab14 subfamily. 99.8 7.6E-20 1.6E-24 151.0 10.1 111 2-153 55-165 (166)
29 cd04127 Rab27A Rab27a subfamil 99.8 1E-19 2.2E-24 151.5 10.2 113 2-154 67-179 (180)
30 KOG0081 GTPase Rab27, small G 99.8 4.2E-20 9.1E-25 157.4 7.2 117 2-158 71-187 (219)
31 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.4E-19 3E-24 152.9 9.9 111 2-151 53-174 (175)
32 cd04126 Rab20 Rab20 subfamily. 99.8 3.7E-19 7.9E-24 157.6 11.3 115 2-154 48-192 (220)
33 cd01871 Rac1_like Rac1-like su 99.8 3.2E-19 7E-24 150.5 10.1 110 2-150 53-173 (174)
34 cd04117 Rab15 Rab15 subfamily. 99.8 3.3E-19 7.1E-24 147.6 10.0 108 2-150 53-160 (161)
35 cd04144 Ras2 Ras2 subfamily. 99.8 5.5E-19 1.2E-23 150.4 11.5 119 2-158 51-169 (190)
36 smart00176 RAN Ran (Ras-relate 99.8 4.2E-19 9.2E-24 154.7 10.8 109 2-154 48-156 (200)
37 cd04134 Rho3 Rho3 subfamily. 99.8 7.8E-19 1.7E-23 149.6 11.2 113 2-153 52-175 (189)
38 smart00174 RHO Rho (Ras homolo 99.8 7.7E-19 1.7E-23 145.3 10.0 113 2-153 50-173 (174)
39 cd04175 Rap1 Rap1 subgroup. T 99.8 7.5E-19 1.6E-23 144.3 9.4 111 2-152 53-163 (164)
40 PF00071 Ras: Ras family; Int 99.8 6.5E-19 1.4E-23 143.8 8.9 110 2-152 52-161 (162)
41 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.1E-18 2.3E-23 154.9 10.7 115 2-155 53-179 (222)
42 KOG0097 GTPase Rab14, small G 99.8 3.6E-19 7.9E-24 149.5 7.1 114 2-156 64-177 (215)
43 cd04111 Rab39 Rab39 subfamily. 99.8 2.3E-18 5.1E-23 150.1 11.6 114 2-155 56-169 (211)
44 cd04136 Rap_like Rap-like subf 99.8 1.5E-18 3.2E-23 141.3 9.7 110 2-151 53-162 (163)
45 cd04109 Rab28 Rab28 subfamily. 99.8 2.2E-18 4.8E-23 149.9 10.8 115 2-154 54-168 (215)
46 cd04176 Rap2 Rap2 subgroup. T 99.8 2E-18 4.3E-23 141.4 9.6 110 2-151 53-162 (163)
47 cd01865 Rab3 Rab3 subfamily. 99.8 3.2E-18 6.9E-23 141.5 10.6 111 2-153 54-164 (165)
48 cd01867 Rab8_Rab10_Rab13_like 99.8 3.1E-18 6.6E-23 141.8 10.4 111 2-153 56-166 (167)
49 PTZ00369 Ras-like protein; Pro 99.8 5.9E-18 1.3E-22 143.9 11.2 113 2-154 57-169 (189)
50 cd04119 RJL RJL (RabJ-Like) su 99.8 4.1E-18 8.9E-23 138.4 9.6 116 2-153 53-168 (168)
51 cd04102 RabL3 RabL3 (Rab-like3 99.8 5.3E-18 1.1E-22 148.4 11.0 138 2-158 58-202 (202)
52 PLN03071 GTP-binding nuclear p 99.8 3.8E-18 8.2E-23 149.8 9.9 109 2-154 66-174 (219)
53 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 5.8E-18 1.3E-22 139.3 10.2 98 22-153 68-165 (166)
54 cd00877 Ran Ran (Ras-related n 99.7 9.8E-18 2.1E-22 139.8 11.4 109 2-154 53-161 (166)
55 cd04125 RabA_like RabA-like su 99.7 1.1E-17 2.5E-22 141.4 11.8 113 2-155 53-165 (188)
56 cd04116 Rab9 Rab9 subfamily. 99.7 6.8E-18 1.5E-22 139.4 10.1 112 2-150 58-169 (170)
57 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 8.6E-18 1.9E-22 141.1 10.7 115 2-154 53-167 (170)
58 cd04128 Spg1 Spg1p. Spg1p (se 99.7 6.7E-18 1.5E-22 143.9 10.1 115 2-153 53-167 (182)
59 cd04132 Rho4_like Rho4-like su 99.7 8.6E-18 1.9E-22 141.3 10.5 117 2-157 53-172 (187)
60 cd01864 Rab19 Rab19 subfamily. 99.7 6.9E-18 1.5E-22 139.0 9.6 110 2-151 56-165 (165)
61 cd04140 ARHI_like ARHI subfami 99.7 9.4E-18 2E-22 138.7 10.4 110 2-149 53-162 (165)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.7 9.2E-18 2E-22 136.7 9.8 110 2-151 54-163 (164)
63 cd04106 Rab23_lke Rab23-like s 99.7 7.2E-18 1.6E-22 137.4 9.1 107 2-150 55-161 (162)
64 cd04130 Wrch_1 Wrch-1 subfamil 99.7 1.8E-17 4E-22 138.1 11.1 109 2-149 52-171 (173)
65 cd04146 RERG_RasL11_like RERG/ 99.7 1.1E-17 2.5E-22 137.6 9.7 113 2-152 51-164 (165)
66 cd04110 Rab35 Rab35 subfamily. 99.7 2.4E-17 5.1E-22 141.7 11.4 113 2-156 59-171 (199)
67 cd04112 Rab26 Rab26 subfamily. 99.7 2.6E-17 5.6E-22 140.2 11.4 113 2-155 54-166 (191)
68 KOG0395 Ras-related GTPase [Ge 99.7 3.8E-17 8.2E-22 142.7 12.5 111 12-155 57-168 (196)
69 cd01868 Rab11_like Rab11-like. 99.7 2.1E-17 4.5E-22 135.6 10.0 109 2-151 56-164 (165)
70 cd04142 RRP22 RRP22 subfamily. 99.7 2.3E-17 5E-22 142.9 10.6 122 2-154 53-176 (198)
71 PLN03108 Rab family protein; P 99.7 3.2E-17 7E-22 142.5 11.5 114 2-156 59-172 (210)
72 smart00173 RAS Ras subfamily o 99.7 2.7E-17 5.9E-22 134.5 10.3 111 2-152 52-162 (164)
73 KOG0095 GTPase Rab30, small G 99.7 3.6E-18 7.9E-23 144.5 5.0 113 2-155 60-172 (213)
74 KOG0393 Ras-related small GTPa 99.7 1.8E-17 3.9E-22 145.3 8.9 115 2-155 57-182 (198)
75 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3.5E-17 7.6E-22 136.1 10.1 111 2-151 55-168 (170)
76 PLN03110 Rab GTPase; Provision 99.7 3.3E-17 7.2E-22 143.2 10.5 113 2-155 65-177 (216)
77 cd04124 RabL2 RabL2 subfamily. 99.7 3.9E-17 8.6E-22 134.9 10.2 108 2-154 53-160 (161)
78 cd04148 RGK RGK subfamily. Th 99.7 6.2E-17 1.3E-21 142.3 11.9 114 2-157 54-168 (221)
79 cd01866 Rab2 Rab2 subfamily. 99.7 6.1E-17 1.3E-21 134.4 10.5 111 2-153 57-167 (168)
80 cd04135 Tc10 TC10 subfamily. 99.7 7.1E-17 1.5E-21 133.5 10.7 111 2-151 52-173 (174)
81 cd04138 H_N_K_Ras_like H-Ras/N 99.7 5.8E-17 1.3E-21 130.9 9.9 109 2-151 53-161 (162)
82 cd04113 Rab4 Rab4 subfamily. 99.7 5.5E-17 1.2E-21 132.6 9.3 109 2-151 53-161 (161)
83 cd01892 Miro2 Miro2 subfamily. 99.7 7.1E-17 1.5E-21 135.2 10.0 109 2-152 58-166 (169)
84 cd04177 RSR1 RSR1 subgroup. R 99.7 1E-16 2.2E-21 132.8 10.6 113 2-153 53-165 (168)
85 cd04143 Rhes_like Rhes_like su 99.7 2.1E-16 4.6E-21 141.9 13.1 119 2-151 52-170 (247)
86 cd04129 Rho2 Rho2 subfamily. 99.7 1.2E-16 2.7E-21 135.6 10.8 115 2-155 53-176 (187)
87 cd04101 RabL4 RabL4 (Rab-like4 99.7 1E-16 2.2E-21 131.1 9.8 108 2-151 56-163 (164)
88 cd04118 Rab24 Rab24 subfamily. 99.7 2.1E-16 4.5E-21 133.7 11.8 114 2-155 54-169 (193)
89 PLN00223 ADP-ribosylation fact 99.7 7.2E-17 1.5E-21 137.3 8.0 115 2-154 65-180 (181)
90 smart00175 RAB Rab subfamily o 99.7 2.3E-16 5E-21 128.2 10.1 111 2-153 53-163 (164)
91 cd01870 RhoA_like RhoA-like su 99.7 4.9E-16 1.1E-20 128.6 10.8 111 2-151 53-174 (175)
92 PLN03118 Rab family protein; P 99.7 5.2E-16 1.1E-20 134.3 10.9 114 2-155 66-180 (211)
93 cd04123 Rab21 Rab21 subfamily. 99.7 5.9E-16 1.3E-20 125.0 9.6 109 2-151 53-161 (162)
94 cd04158 ARD1 ARD1 subfamily. 99.6 4.1E-16 8.8E-21 130.0 8.5 112 2-154 47-163 (169)
95 smart00177 ARF ARF-like small 99.6 3.8E-16 8.3E-21 131.5 8.4 112 2-151 61-173 (175)
96 KOG4252 GTP-binding protein [S 99.6 2.1E-16 4.5E-21 137.1 6.5 113 1-155 72-184 (246)
97 cd01860 Rab5_related Rab5-rela 99.6 1.1E-15 2.4E-20 124.5 10.1 109 2-151 54-162 (163)
98 cd01862 Rab7 Rab7 subfamily. 99.6 1.5E-15 3.2E-20 124.6 10.7 117 2-154 53-169 (172)
99 cd01861 Rab6 Rab6 subfamily. 99.6 1.1E-15 2.4E-20 124.4 9.4 108 2-150 53-160 (161)
100 cd04149 Arf6 Arf6 subfamily. 99.6 4.3E-16 9.3E-21 130.5 7.0 107 2-149 57-167 (168)
101 cd01863 Rab18 Rab18 subfamily. 99.6 1.7E-15 3.7E-20 123.5 10.3 108 2-150 53-160 (161)
102 cd04114 Rab30 Rab30 subfamily. 99.6 1.6E-15 3.6E-20 124.5 9.9 109 2-151 60-168 (169)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.6 7.7E-16 1.7E-20 127.5 7.9 110 2-149 48-158 (159)
104 PTZ00133 ADP-ribosylation fact 99.6 1.1E-15 2.3E-20 130.1 8.8 115 2-155 65-181 (182)
105 cd04139 RalA_RalB RalA/RalB su 99.6 3.3E-15 7.2E-20 121.1 10.4 98 23-153 66-163 (164)
106 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 4.1E-16 9E-21 130.0 4.8 113 2-148 48-162 (164)
107 cd01893 Miro1 Miro1 subfamily. 99.6 3.7E-15 8.1E-20 123.4 9.1 113 2-153 51-165 (166)
108 cd00157 Rho Rho (Ras homology) 99.6 9.2E-15 2E-19 119.8 10.1 109 2-149 52-170 (171)
109 cd04157 Arl6 Arl6 subfamily. 99.6 5.2E-15 1.1E-19 120.2 8.1 106 2-149 49-161 (162)
110 cd04147 Ras_dva Ras-dva subfam 99.6 1.5E-14 3.2E-19 124.1 10.2 113 2-153 51-164 (198)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 1.8E-14 3.8E-19 122.2 9.0 120 2-157 56-175 (183)
112 cd04161 Arl2l1_Arl13_like Arl2 99.5 7.7E-15 1.7E-19 122.4 6.5 111 2-149 47-166 (167)
113 cd00876 Ras Ras family. The R 99.5 2.2E-14 4.8E-19 115.5 9.0 97 21-150 63-159 (160)
114 cd04137 RheB Rheb (Ras Homolog 99.5 3.1E-14 6.7E-19 118.7 10.1 114 2-155 53-166 (180)
115 cd04154 Arl2 Arl2 subfamily. 99.5 2.1E-14 4.5E-19 119.7 7.6 107 2-149 62-172 (173)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.5 1.9E-14 4.1E-19 117.2 7.1 110 2-149 48-159 (160)
117 PTZ00132 GTP-binding nuclear p 99.5 7.9E-14 1.7E-18 120.8 11.2 96 23-155 76-171 (215)
118 cd00154 Rab Rab family. Rab G 99.5 5.6E-14 1.2E-18 111.8 8.9 106 2-148 53-158 (159)
119 cd04151 Arl1 Arl1 subfamily. 99.5 7.3E-14 1.6E-18 114.4 8.3 104 2-149 47-157 (158)
120 cd00879 Sar1 Sar1 subfamily. 99.5 8.7E-14 1.9E-18 117.2 8.3 96 22-151 80-190 (190)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 8.1E-14 1.8E-18 116.8 7.9 104 2-149 63-173 (174)
122 KOG4423 GTP-binding protein-li 99.5 8.6E-14 1.9E-18 121.3 6.6 118 2-155 79-197 (229)
123 cd01898 Obg Obg subfamily. Th 99.5 2.8E-13 6.1E-18 111.1 8.7 114 2-150 52-169 (170)
124 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.8E-13 4E-18 112.1 7.6 107 2-149 54-166 (167)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.4 3E-13 6.4E-18 110.1 8.1 107 2-149 47-157 (158)
126 smart00178 SAR Sar1p-like memb 99.4 3.6E-13 7.8E-18 114.4 8.0 111 2-150 65-183 (184)
127 cd01890 LepA LepA subfamily. 99.4 4.9E-13 1.1E-17 111.0 7.7 104 2-151 71-176 (179)
128 cd01897 NOG NOG1 is a nucleola 99.4 1.9E-12 4.2E-17 106.1 8.5 87 28-151 79-167 (168)
129 cd04155 Arl3 Arl3 subfamily. 99.4 2.2E-12 4.8E-17 106.5 8.0 97 22-149 75-172 (173)
130 PF00025 Arf: ADP-ribosylation 99.3 2.4E-12 5.1E-17 109.2 7.7 102 21-151 74-175 (175)
131 TIGR00157 ribosome small subun 99.3 3.8E-12 8.3E-17 114.4 8.9 91 21-149 29-120 (245)
132 cd04159 Arl10_like Arl10-like 99.3 4.2E-12 9.2E-17 101.2 8.1 104 2-149 48-158 (159)
133 PRK12299 obgE GTPase CgtA; Rev 99.3 4.7E-12 1E-16 118.9 9.2 98 25-154 233-330 (335)
134 TIGR02528 EutP ethanolamine ut 99.3 9.1E-12 2E-16 100.0 7.2 84 24-148 58-141 (142)
135 cd01881 Obg_like The Obg-like 99.2 2E-11 4.2E-16 100.2 6.7 100 24-150 70-175 (176)
136 cd01878 HflX HflX subfamily. 99.2 1.8E-11 4E-16 104.7 6.6 88 25-151 117-204 (204)
137 KOG3883 Ras family small GTPas 99.2 5.8E-11 1.3E-15 101.1 9.4 96 21-149 77-172 (198)
138 COG1100 GTPase SAR1 and relate 99.2 8.9E-11 1.9E-15 100.8 10.0 115 2-154 58-187 (219)
139 cd04171 SelB SelB subfamily. 99.2 1.9E-11 4.1E-16 99.0 5.4 103 2-148 55-162 (164)
140 TIGR02729 Obg_CgtA Obg family 99.2 4.8E-11 1E-15 111.8 8.0 114 2-151 209-328 (329)
141 KOG0076 GTP-binding ADP-ribosy 99.2 1.3E-11 2.8E-16 106.6 3.2 116 1-154 72-189 (197)
142 KOG0070 GTP-binding ADP-ribosy 99.2 1.1E-10 2.4E-15 101.0 8.5 115 2-154 65-180 (181)
143 cd01879 FeoB Ferrous iron tran 99.2 1.7E-10 3.6E-15 93.1 9.0 107 2-150 47-155 (158)
144 cd00882 Ras_like_GTPase Ras-li 99.1 2.9E-10 6.2E-15 87.7 8.8 93 23-148 63-156 (157)
145 cd01894 EngA1 EngA1 subfamily. 99.1 1.2E-10 2.6E-15 93.4 5.8 108 2-151 49-157 (157)
146 KOG0073 GTP-binding ADP-ribosy 99.1 3.6E-10 7.8E-15 96.9 8.7 105 21-156 76-182 (185)
147 PRK15467 ethanolamine utilizat 99.1 1.4E-10 3E-15 96.9 5.8 88 24-153 60-148 (158)
148 KOG0096 GTPase Ran/TC4/GSP1 (n 99.1 7.3E-11 1.6E-15 103.2 3.9 106 13-155 66-172 (216)
149 PRK03003 GTP-binding protein D 99.1 1.7E-10 3.8E-15 112.4 6.4 116 2-152 263-382 (472)
150 PRK03003 GTP-binding protein D 99.0 2.8E-10 6E-15 111.0 6.4 109 2-153 90-200 (472)
151 PF08477 Miro: Miro-like prote 99.0 3.5E-10 7.6E-15 88.2 5.0 63 2-84 54-119 (119)
152 PRK12297 obgE GTPase CgtA; Rev 99.0 1.5E-09 3.2E-14 105.3 9.7 115 2-155 210-330 (424)
153 TIGR03156 GTP_HflX GTP-binding 99.0 4.9E-10 1.1E-14 105.9 6.1 109 2-150 241-350 (351)
154 PRK04213 GTP-binding protein; 99.0 3.1E-10 6.8E-15 96.7 3.8 56 73-153 130-193 (201)
155 cd01891 TypA_BipA TypA (tyrosi 99.0 8.4E-10 1.8E-14 94.2 6.4 115 2-153 69-189 (194)
156 TIGR01393 lepA GTP-binding pro 99.0 1.1E-09 2.4E-14 110.0 7.1 105 2-152 74-180 (595)
157 TIGR00450 mnmE_trmE_thdF tRNA 98.9 1.3E-09 2.8E-14 106.0 6.9 106 2-154 255-362 (442)
158 PRK15494 era GTPase Era; Provi 98.9 8.3E-10 1.8E-14 103.6 5.0 111 2-153 104-217 (339)
159 TIGR00436 era GTP-binding prot 98.9 1.2E-09 2.7E-14 98.7 5.8 111 2-151 52-163 (270)
160 TIGR00231 small_GTP small GTP- 98.9 3.9E-09 8.5E-14 82.8 8.0 104 2-147 54-159 (161)
161 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 3.2E-09 6.9E-14 86.6 7.5 109 2-151 54-165 (168)
162 PRK11058 GTPase HflX; Provisio 98.9 2.9E-09 6.4E-14 103.1 8.2 93 23-153 271-363 (426)
163 cd00881 GTP_translation_factor 98.9 1.9E-09 4.1E-14 89.2 5.7 114 2-151 66-186 (189)
164 TIGR03594 GTPase_EngA ribosome 98.9 3.8E-09 8.2E-14 100.6 6.8 92 24-152 250-344 (429)
165 KOG0075 GTP-binding ADP-ribosy 98.8 7.6E-09 1.6E-13 87.8 7.3 109 12-151 71-181 (186)
166 cd00880 Era_like Era (E. coli 98.8 5.9E-09 1.3E-13 81.8 6.0 113 2-150 49-162 (163)
167 cd01888 eIF2_gamma eIF2-gamma 98.8 3.3E-09 7.2E-14 91.9 4.3 106 2-151 87-198 (203)
168 cd04164 trmE TrmE (MnmE, ThdF, 98.8 3.5E-09 7.5E-14 84.7 3.9 82 23-151 75-156 (157)
169 PRK12298 obgE GTPase CgtA; Rev 98.8 1.6E-08 3.4E-13 97.0 8.3 98 25-154 234-335 (390)
170 KOG0071 GTP-binding ADP-ribosy 98.8 1.2E-08 2.6E-13 86.0 6.6 100 21-151 77-177 (180)
171 cd04163 Era Era subfamily. Er 98.8 6.5E-09 1.4E-13 83.0 4.1 89 24-150 78-167 (168)
172 TIGR00437 feoB ferrous iron tr 98.8 1.4E-08 3.1E-13 102.0 7.4 108 2-151 45-154 (591)
173 PRK05433 GTP-binding protein L 98.7 2.4E-08 5.1E-13 100.6 8.2 94 20-152 89-184 (600)
174 PRK05291 trmE tRNA modificatio 98.7 8.3E-09 1.8E-13 100.4 4.7 103 2-153 267-371 (449)
175 cd01895 EngA2 EngA2 subfamily. 98.7 4.5E-08 9.8E-13 79.1 8.1 91 24-150 80-173 (174)
176 PRK12296 obgE GTPase CgtA; Rev 98.7 2.1E-08 4.5E-13 99.1 7.2 106 25-155 233-343 (500)
177 PRK00093 GTP-binding protein D 98.7 2.1E-08 4.5E-13 96.0 6.6 104 2-149 53-159 (435)
178 PRK09518 bifunctional cytidyla 98.7 2E-08 4.3E-13 102.7 6.8 109 1-152 326-436 (712)
179 KOG1673 Ras GTPases [General f 98.7 6.2E-08 1.3E-12 83.0 8.6 113 2-151 73-185 (205)
180 TIGR00483 EF-1_alpha translati 98.7 1.3E-08 2.8E-13 97.9 4.8 107 2-145 89-200 (426)
181 cd01855 YqeH YqeH. YqeH is an 98.7 5.7E-08 1.2E-12 82.9 8.3 90 22-151 28-124 (190)
182 cd01896 DRG The developmentall 98.7 3.3E-08 7.2E-13 88.1 6.6 50 73-151 176-225 (233)
183 PRK00089 era GTPase Era; Revie 98.7 1.8E-08 3.8E-13 91.6 4.8 91 24-151 80-170 (292)
184 KOG1707 Predicted Ras related/ 98.6 3.1E-08 6.6E-13 98.5 5.6 100 24-153 75-176 (625)
185 PRK12289 GTPase RsgA; Reviewed 98.6 1.5E-07 3.1E-12 89.4 9.7 86 23-150 84-173 (352)
186 cd01889 SelB_euk SelB subfamil 98.6 4.3E-08 9.4E-13 83.5 5.4 91 27-152 90-186 (192)
187 TIGR03594 GTPase_EngA ribosome 98.6 4.5E-08 9.8E-13 93.2 5.9 106 2-151 51-159 (429)
188 PRK09518 bifunctional cytidyla 98.6 4.1E-08 9E-13 100.4 5.9 116 2-153 502-622 (712)
189 TIGR00487 IF-2 translation ini 98.6 1.1E-07 2.4E-12 95.7 8.7 104 2-149 139-247 (587)
190 TIGR00475 selB selenocysteine- 98.6 7.8E-08 1.7E-12 96.5 7.3 106 2-152 54-166 (581)
191 PRK00098 GTPase RsgA; Reviewed 98.6 1.5E-07 3.2E-12 86.9 8.0 90 21-148 73-163 (298)
192 TIGR03597 GTPase_YqeH ribosome 98.6 1.7E-07 3.8E-12 88.7 8.4 92 22-149 57-150 (360)
193 KOG0072 GTP-binding ADP-ribosy 98.5 2.4E-07 5.1E-12 78.5 7.2 103 21-153 78-180 (182)
194 cd01854 YjeQ_engC YjeQ/EngC. 98.5 2.1E-07 4.5E-12 85.5 7.5 88 22-148 72-160 (287)
195 PRK00093 GTP-binding protein D 98.5 8.6E-08 1.9E-12 91.7 5.0 94 24-152 251-344 (435)
196 cd04105 SR_beta Signal recogni 98.5 1.7E-07 3.6E-12 81.6 6.1 59 21-88 64-124 (203)
197 CHL00189 infB translation init 98.5 2.2E-07 4.7E-12 95.7 7.1 99 2-150 299-408 (742)
198 PRK12288 GTPase RsgA; Reviewed 98.5 4.8E-07 1E-11 85.7 8.5 90 25-150 117-206 (347)
199 PRK12317 elongation factor 1-a 98.5 1.9E-07 4.1E-12 89.7 5.8 110 2-144 88-197 (425)
200 PRK05306 infB translation init 98.5 4.2E-07 9.1E-12 94.2 8.3 101 2-149 341-449 (787)
201 PRK00454 engB GTP-binding prot 98.5 2.9E-07 6.3E-12 77.5 5.9 93 23-151 98-193 (196)
202 TIGR00491 aIF-2 translation in 98.5 3.7E-07 8E-12 92.0 7.5 60 2-87 73-135 (590)
203 TIGR03598 GTPase_YsxC ribosome 98.4 2E-07 4.3E-12 78.6 3.7 83 24-141 93-179 (179)
204 cd01859 MJ1464 MJ1464. This f 98.4 1.2E-06 2.7E-11 72.1 7.8 90 22-151 6-95 (156)
205 smart00010 small_GTPase Small 98.4 1E-06 2.2E-11 68.3 6.7 52 23-88 41-92 (124)
206 KOG0074 GTP-binding ADP-ribosy 98.3 2.9E-07 6.3E-12 77.9 3.2 99 20-149 77-176 (185)
207 cd04166 CysN_ATPS CysN_ATPS su 98.3 6.6E-07 1.4E-11 77.8 5.3 103 2-143 81-185 (208)
208 TIGR03680 eif2g_arch translati 98.3 6.6E-07 1.4E-11 85.9 4.8 92 25-151 100-195 (406)
209 PRK04004 translation initiatio 98.3 2.1E-06 4.6E-11 86.4 8.3 59 2-86 75-136 (586)
210 TIGR01394 TypA_BipA GTP-bindin 98.3 1.3E-06 2.7E-11 88.2 6.6 102 20-151 79-190 (594)
211 PRK10512 selenocysteinyl-tRNA- 98.3 1.2E-06 2.7E-11 88.5 6.4 105 2-151 55-165 (614)
212 PRK04000 translation initiatio 98.3 1.2E-06 2.6E-11 84.4 5.9 91 24-151 101-200 (411)
213 PRK10218 GTP-binding protein; 98.2 2.4E-06 5.2E-11 86.4 7.7 101 2-139 72-172 (607)
214 cd01883 EF1_alpha Eukaryotic e 98.2 1.2E-06 2.6E-11 76.9 4.6 91 25-141 97-194 (219)
215 cd04167 Snu114p Snu114p subfam 98.2 1.4E-06 3E-11 75.8 5.0 50 21-86 87-136 (213)
216 cd01885 EF2 EF2 (for archaea a 98.2 1.9E-06 4E-11 76.8 5.6 84 2-109 77-160 (222)
217 PRK09554 feoB ferrous iron tra 98.2 3.9E-06 8.4E-11 87.0 8.2 84 27-151 84-167 (772)
218 PRK14845 translation initiatio 98.1 7.9E-06 1.7E-10 87.0 9.2 60 2-87 530-592 (1049)
219 KOG0462 Elongation factor-type 98.1 6.7E-06 1.4E-10 81.8 7.3 110 1-151 117-234 (650)
220 cd01876 YihA_EngB The YihA (En 98.1 9.4E-06 2E-10 64.9 6.9 86 28-150 81-169 (170)
221 cd04168 TetM_like Tet(M)-like 98.1 1.1E-05 2.3E-10 72.3 7.9 63 2-87 68-130 (237)
222 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 3.2E-06 7E-11 69.1 3.2 80 20-139 3-84 (141)
223 COG2229 Predicted GTPase [Gene 98.0 2.3E-05 4.9E-10 68.4 8.3 91 23-150 86-176 (187)
224 cd01849 YlqF_related_GTPase Yl 98.0 3.4E-05 7.3E-10 63.9 8.7 80 30-151 1-84 (155)
225 PF02421 FeoB_N: Ferrous iron 98.0 1.7E-05 3.6E-10 67.5 6.1 80 27-147 77-156 (156)
226 PF00009 GTP_EFTU: Elongation 97.9 2.1E-05 4.6E-10 66.9 6.4 96 25-151 90-186 (188)
227 cd01858 NGP_1 NGP-1. Autoanti 97.9 6.3E-05 1.4E-09 62.3 8.2 85 26-150 6-93 (157)
228 PLN00043 elongation factor 1-a 97.9 1.3E-05 2.8E-10 78.3 4.6 104 12-142 91-203 (447)
229 PRK13796 GTPase YqeH; Provisio 97.8 8.4E-05 1.8E-09 70.7 9.3 88 27-150 67-157 (365)
230 PRK13351 elongation factor G; 97.8 5E-05 1.1E-09 77.5 7.2 64 2-88 77-140 (687)
231 cd00066 G-alpha G protein alph 97.7 9.5E-05 2.1E-09 69.0 7.8 115 21-155 177-314 (317)
232 TIGR00101 ureG urease accessor 97.7 0.00018 4E-09 62.8 8.8 82 29-151 113-195 (199)
233 KOG1489 Predicted GTP-binding 97.7 0.00017 3.7E-09 68.0 8.9 87 27-147 273-362 (366)
234 cd01856 YlqF YlqF. Proteins o 97.7 9.1E-05 2E-09 62.4 6.4 85 22-151 13-100 (171)
235 COG0481 LepA Membrane GTPase L 97.6 0.00021 4.5E-09 70.6 8.4 114 1-151 66-185 (603)
236 KOG0705 GTPase-activating prot 97.6 0.0002 4.4E-09 71.6 8.0 110 24-163 91-200 (749)
237 PRK13768 GTPase; Provisional 97.6 0.00015 3.3E-09 65.5 6.6 47 29-88 129-177 (253)
238 cd04169 RF3 RF3 subfamily. Pe 97.6 0.00014 3.1E-09 66.3 6.4 88 2-120 75-162 (267)
239 cd04165 GTPBP1_like GTPBP1-lik 97.6 0.00046 1E-08 61.3 9.1 45 28-88 109-153 (224)
240 TIGR00485 EF-Tu translation el 97.5 0.00019 4.1E-09 68.7 6.8 81 28-138 98-179 (394)
241 TIGR03596 GTPase_YlqF ribosome 97.5 0.00027 5.9E-09 64.4 7.6 87 22-153 15-104 (276)
242 smart00275 G_alpha G protein a 97.5 0.00023 5.1E-09 67.2 6.9 115 21-155 200-337 (342)
243 KOG0077 Vesicle coat complex C 97.5 5E-05 1.1E-09 65.8 1.5 68 10-88 68-136 (193)
244 COG2262 HflX GTPases [General 97.4 0.0013 2.9E-08 63.6 10.8 89 27-154 270-358 (411)
245 PRK12736 elongation factor Tu; 97.4 0.00029 6.3E-09 67.5 6.3 82 27-138 97-179 (394)
246 COG1159 Era GTPase [General fu 97.4 0.00052 1.1E-08 64.0 7.4 94 24-154 81-174 (298)
247 PRK09866 hypothetical protein; 97.4 0.00091 2E-08 68.5 9.6 91 24-149 254-350 (741)
248 COG0532 InfB Translation initi 97.4 0.00059 1.3E-08 67.7 7.8 101 12-149 61-167 (509)
249 PRK12740 elongation factor G; 97.3 0.00048 1E-08 70.0 7.4 53 20-88 75-127 (668)
250 PF10662 PduV-EutP: Ethanolami 97.3 0.00057 1.2E-08 57.5 6.6 79 28-147 63-141 (143)
251 PRK12735 elongation factor Tu; 97.3 0.00054 1.2E-08 65.7 7.0 84 26-139 96-180 (396)
252 PF04670 Gtr1_RagA: Gtr1/RagA 97.3 0.0002 4.3E-09 64.6 3.7 122 2-154 52-178 (232)
253 TIGR02034 CysN sulfate adenyly 97.3 0.00029 6.2E-09 67.9 4.9 88 25-142 100-187 (406)
254 cd04104 p47_IIGP_like p47 (47- 97.3 0.00083 1.8E-08 57.8 7.3 97 26-156 78-188 (197)
255 TIGR00073 hypB hydrogenase acc 97.3 0.0012 2.5E-08 57.5 8.3 56 74-150 149-205 (207)
256 PRK09563 rbgA GTPase YlqF; Rev 97.3 0.00079 1.7E-08 61.8 7.4 86 22-152 18-106 (287)
257 PRK05124 cysN sulfate adenylyl 97.3 0.00029 6.2E-09 69.4 4.6 89 26-143 128-216 (474)
258 KOG1707 Predicted Ras related/ 97.3 0.00084 1.8E-08 67.5 7.7 89 27-151 494-582 (625)
259 PRK01889 GTPase RsgA; Reviewed 97.2 0.002 4.3E-08 61.2 9.8 87 21-147 105-192 (356)
260 COG0536 Obg Predicted GTPase [ 97.2 0.0025 5.4E-08 60.7 10.2 97 28-155 237-336 (369)
261 COG1160 Predicted GTPases [Gen 97.1 0.0022 4.8E-08 62.8 9.1 88 20-151 75-164 (444)
262 cd01884 EF_Tu EF-Tu subfamily. 97.1 0.0029 6.2E-08 55.1 8.6 87 25-141 85-172 (195)
263 PRK00741 prfC peptide chain re 97.0 0.0012 2.5E-08 66.0 6.5 52 21-88 95-146 (526)
264 TIGR00484 EF-G translation elo 97.0 0.0014 3E-08 67.2 7.0 81 2-113 79-159 (689)
265 PRK05506 bifunctional sulfate 96.9 0.0011 2.3E-08 67.4 4.6 87 26-142 125-211 (632)
266 TIGR00503 prfC peptide chain r 96.8 0.0017 3.7E-08 64.9 5.4 64 2-88 84-147 (527)
267 COG1160 Predicted GTPases [Gen 96.8 0.0066 1.4E-07 59.5 9.2 92 26-150 258-349 (444)
268 cd01899 Ygr210 Ygr210 subfamil 96.7 0.0031 6.7E-08 59.3 5.9 57 73-154 214-271 (318)
269 PLN03126 Elongation factor Tu; 96.7 0.0027 5.8E-08 62.8 5.5 85 26-140 165-250 (478)
270 PTZ00327 eukaryotic translatio 96.6 0.012 2.7E-07 57.9 9.7 91 27-149 139-230 (460)
271 cd01886 EF-G Elongation factor 96.6 0.0056 1.2E-07 56.0 6.5 53 20-88 79-131 (270)
272 COG0486 ThdF Predicted GTPase 96.5 0.0077 1.7E-07 59.2 7.3 83 24-151 292-375 (454)
273 KOG3905 Dynein light intermedi 96.3 0.021 4.6E-07 54.6 8.8 104 32-151 131-289 (473)
274 cd04170 EF-G_bact Elongation f 96.3 0.0031 6.6E-08 56.9 3.1 53 20-88 79-131 (268)
275 PF09439 SRPRB: Signal recogni 96.2 0.0065 1.4E-07 53.0 4.3 68 12-88 55-127 (181)
276 PRK09435 membrane ATPase/prote 96.1 0.027 5.9E-07 53.3 8.8 91 26-152 167-260 (332)
277 KOG1423 Ras-like GTPase ERA [C 96.1 0.012 2.6E-07 55.8 6.2 105 26-151 153-270 (379)
278 COG1163 DRG Predicted GTPase [ 96.0 0.042 9.1E-07 52.3 9.3 56 73-157 239-294 (365)
279 CHL00071 tufA elongation facto 96.0 0.029 6.4E-07 54.0 8.5 85 26-140 96-181 (409)
280 COG1084 Predicted GTPase [Gene 96.0 0.04 8.6E-07 52.4 9.0 89 29-154 248-338 (346)
281 PRK00049 elongation factor Tu; 96.0 0.021 4.5E-07 54.9 7.1 85 25-139 95-180 (396)
282 TIGR00750 lao LAO/AO transport 95.9 0.017 3.7E-07 53.3 6.0 20 132-151 218-237 (300)
283 KOG1145 Mitochondrial translat 95.7 0.037 8E-07 55.9 7.6 98 12-148 207-312 (683)
284 PLN00023 GTP-binding protein; 95.6 0.0052 1.1E-07 58.3 1.3 31 1-31 1-31 (334)
285 PF06858 NOG1: Nucleolar GTP-b 95.5 0.055 1.2E-06 39.0 6.1 43 29-84 14-58 (58)
286 COG0370 FeoB Fe2+ transport sy 95.4 0.051 1.1E-06 55.7 7.9 89 23-152 74-164 (653)
287 TIGR00490 aEF-2 translation el 95.4 0.012 2.6E-07 60.9 3.4 52 20-87 101-152 (720)
288 COG1162 Predicted GTPases [Gen 95.3 0.1 2.2E-06 49.0 9.0 87 26-149 77-164 (301)
289 COG0218 Predicted GTPase [Gene 95.3 0.09 1.9E-06 46.7 8.0 89 29-152 107-197 (200)
290 KOG1532 GTPase XAB1, interacts 95.3 0.18 4E-06 47.4 10.3 17 72-88 180-196 (366)
291 PRK12739 elongation factor G; 95.2 0.037 8E-07 56.9 6.0 64 2-88 77-140 (691)
292 PLN03127 Elongation factor Tu; 95.1 0.068 1.5E-06 52.5 7.5 46 27-88 146-192 (447)
293 PTZ00141 elongation factor 1- 95.0 0.059 1.3E-06 52.8 6.6 91 25-142 105-203 (446)
294 COG4917 EutP Ethanolamine util 94.7 0.12 2.7E-06 43.2 6.9 52 74-148 91-142 (148)
295 KOG4273 Uncharacterized conser 94.6 0.15 3.2E-06 47.5 7.6 44 30-87 80-123 (418)
296 COG5257 GCD11 Translation init 94.4 0.035 7.5E-07 53.1 3.3 89 30-153 111-203 (415)
297 cd04178 Nucleostemin_like Nucl 94.4 0.065 1.4E-06 45.8 4.8 44 30-88 1-45 (172)
298 PF05783 DLIC: Dynein light in 94.3 0.2 4.3E-06 49.8 8.4 64 73-152 196-264 (472)
299 cd03110 Fer4_NifH_child This p 93.5 0.42 9.2E-06 39.9 8.0 68 23-116 109-176 (179)
300 COG0378 HypB Ni2+-binding GTPa 93.5 0.078 1.7E-06 47.1 3.6 86 24-150 113-199 (202)
301 KOG0461 Selenocysteine-specifi 93.4 0.36 7.8E-06 46.8 8.1 107 20-155 82-192 (522)
302 KOG0090 Signal recognition par 92.7 0.49 1.1E-05 42.9 7.4 69 11-88 87-160 (238)
303 COG5256 TEF1 Translation elong 92.5 0.23 4.9E-06 48.6 5.4 91 28-144 108-203 (428)
304 KOG0082 G-protein alpha subuni 92.4 0.64 1.4E-05 44.7 8.3 112 24-156 214-348 (354)
305 cd01850 CDC_Septin CDC/Septin. 92.2 0.22 4.7E-06 45.7 4.7 38 74-116 144-181 (276)
306 COG2895 CysN GTPases - Sulfate 91.9 0.47 1E-05 46.0 6.8 53 75-142 141-193 (431)
307 COG5258 GTPBP1 GTPase [General 91.9 0.59 1.3E-05 45.9 7.4 27 132-159 319-345 (527)
308 PRK10463 hydrogenase nickel in 91.8 0.27 5.7E-06 46.0 4.9 55 74-149 231-286 (290)
309 PRK00007 elongation factor G; 91.6 0.38 8.2E-06 49.7 6.3 61 12-88 81-142 (693)
310 KOG1490 GTP-binding protein CR 91.5 0.77 1.7E-05 46.3 7.9 90 31-152 250-341 (620)
311 KOG1144 Translation initiation 91.4 0.78 1.7E-05 48.2 8.1 121 12-163 546-702 (1064)
312 PF00503 G-alpha: G-protein al 91.4 0.22 4.7E-06 47.5 4.0 55 22-87 253-317 (389)
313 COG1703 ArgK Putative periplas 91.4 0.79 1.7E-05 43.4 7.5 94 20-152 155-254 (323)
314 PF14331 ImcF-related_N: ImcF- 91.4 1.3 2.8E-05 40.4 8.9 50 27-88 24-84 (266)
315 cd01882 BMS1 Bms1. Bms1 is an 90.7 0.91 2E-05 40.1 7.0 47 26-88 101-148 (225)
316 COG3276 SelB Selenocysteine-sp 90.2 1.5 3.3E-05 43.2 8.5 85 28-151 73-161 (447)
317 KOG3886 GTP-binding protein [S 89.4 0.73 1.6E-05 42.5 5.3 75 2-92 57-135 (295)
318 PLN00116 translation elongatio 88.3 0.4 8.7E-06 50.7 3.3 59 12-86 104-163 (843)
319 COG1161 Predicted GTPases [Gen 88.2 0.83 1.8E-05 42.9 5.1 48 23-88 29-76 (322)
320 KOG1191 Mitochondrial GTPase [ 88.1 0.86 1.9E-05 45.6 5.3 112 17-155 335-453 (531)
321 PF01926 MMR_HSR1: 50S ribosom 87.8 1.4 3E-05 34.1 5.3 39 25-82 76-116 (116)
322 PRK07560 elongation factor EF- 87.4 0.56 1.2E-05 48.7 3.7 60 12-87 93-153 (731)
323 TIGR03348 VI_IcmF type VI secr 87.2 1.7 3.7E-05 47.6 7.4 50 27-88 200-258 (1169)
324 PTZ00416 elongation factor 2; 87.0 0.44 9.6E-06 50.3 2.7 59 12-86 98-157 (836)
325 COG1217 TypA Predicted membran 86.6 4.5 9.7E-05 40.8 9.2 115 11-155 73-194 (603)
326 cd01852 AIG1 AIG1 (avrRpt2-ind 85.4 4.5 9.9E-05 34.3 7.7 99 26-153 81-185 (196)
327 COG3596 Predicted GTPase [Gene 85.3 0.99 2.2E-05 42.3 3.8 124 1-152 90-222 (296)
328 KOG0458 Elongation factor 1 al 84.6 3 6.5E-05 42.6 7.1 88 28-143 278-373 (603)
329 PF00350 Dynamin_N: Dynamin fa 84.2 1.4 3E-05 36.0 3.8 49 20-83 120-168 (168)
330 PF03029 ATP_bind_1: Conserved 84.1 2.2 4.8E-05 38.3 5.5 46 28-87 122-170 (238)
331 TIGR02836 spore_IV_A stage IV 84.1 3.9 8.6E-05 40.7 7.5 48 23-85 139-192 (492)
332 PF03308 ArgK: ArgK protein; 83.1 0.4 8.7E-06 44.3 0.2 87 26-151 140-229 (266)
333 smart00053 DYNc Dynamin, GTPas 82.6 2.4 5.1E-05 38.5 5.0 53 21-88 154-207 (240)
334 PRK09602 translation-associate 81.8 2.3 4.9E-05 41.3 4.9 52 73-150 217-269 (396)
335 PF11111 CENP-M: Centromere pr 81.0 13 0.00027 32.6 8.7 90 28-156 64-153 (176)
336 KOG1424 Predicted GTP-binding 79.8 2.5 5.3E-05 42.7 4.4 46 27-88 173-220 (562)
337 COG0480 FusA Translation elong 77.7 2 4.4E-05 44.7 3.3 72 1-88 70-143 (697)
338 KOG0468 U5 snRNP-specific prot 77.2 2.4 5.3E-05 44.2 3.6 59 12-86 203-262 (971)
339 PRK13185 chlL protochlorophyll 75.0 35 0.00077 30.3 10.2 103 25-153 137-247 (270)
340 KOG0460 Mitochondrial translat 73.3 4.5 9.7E-05 39.3 4.1 94 29-151 141-240 (449)
341 COG0050 TufB GTPases - transla 72.7 6.6 0.00014 37.6 4.9 70 29-122 99-172 (394)
342 COG1149 MinD superfamily P-loo 72.2 22 0.00047 33.4 8.2 73 25-126 182-254 (284)
343 PRK13505 formate--tetrahydrofo 70.5 19 0.00041 36.8 7.9 50 42-115 356-405 (557)
344 KOG2484 GTPase [General functi 64.7 11 0.00025 37.0 4.9 56 27-109 145-202 (435)
345 TIGR02016 BchX chlorophyllide 64.4 44 0.00095 30.9 8.6 101 26-154 145-251 (296)
346 cd02032 Bchl_like This family 62.5 74 0.0016 28.2 9.5 102 26-153 136-245 (267)
347 KOG0466 Translation initiation 59.5 5.3 0.00011 38.4 1.6 60 75-151 181-240 (466)
348 PF14784 ECIST_Cterm: C-termin 54.0 24 0.00051 29.2 4.4 45 24-78 79-123 (126)
349 KOG2423 Nucleolar GTPase [Gene 53.4 59 0.0013 32.5 7.6 90 27-154 212-301 (572)
350 KOG0463 GTP-binding protein GP 50.8 36 0.00077 33.8 5.7 17 72-88 272-288 (641)
351 cd02033 BchX Chlorophyllide re 50.5 1.4E+02 0.003 28.4 9.6 96 29-153 173-274 (329)
352 PF10036 RLL: Putative carniti 48.8 35 0.00076 31.1 5.1 78 36-160 17-96 (249)
353 COG3640 CooC CO dehydrogenase 48.8 61 0.0013 30.0 6.5 61 24-111 151-211 (255)
354 KOG3887 Predicted small GTPase 48.3 1.4E+02 0.0031 28.1 8.9 104 24-154 97-204 (347)
355 PF03709 OKR_DC_1_N: Orn/Lys/A 45.5 35 0.00076 27.0 4.1 40 28-83 38-77 (115)
356 TIGR01968 minD_bact septum sit 45.0 1.3E+02 0.0027 26.1 7.9 109 23-153 128-238 (261)
357 COG2179 Predicted hydrolase of 44.8 1.2E+02 0.0027 26.5 7.5 46 40-116 44-89 (175)
358 KOG2485 Conserved ATP/GTP bind 43.4 52 0.0011 31.5 5.4 48 23-88 41-88 (335)
359 CHL00072 chlL photochlorophyll 43.2 2.6E+02 0.0057 25.6 10.4 103 26-154 136-246 (290)
360 COG3523 IcmF Type VI protein s 41.0 95 0.0021 34.7 7.7 51 26-88 212-271 (1188)
361 KOG1954 Endocytosis/signaling 40.9 26 0.00056 34.7 3.1 54 20-88 173-226 (532)
362 KOG1143 Predicted translation 40.8 1.1E+02 0.0024 30.5 7.3 17 72-88 302-318 (591)
363 KOG0410 Predicted GTP binding 40.5 27 0.00059 33.9 3.1 86 26-151 255-340 (410)
364 cd02037 MRP-like MRP (Multiple 40.5 2E+02 0.0044 23.5 8.5 73 27-120 90-167 (169)
365 COG1908 FrhD Coenzyme F420-red 40.3 89 0.0019 26.0 5.7 59 76-154 57-124 (132)
366 KOG0099 G protein subunit Galp 39.9 60 0.0013 30.8 5.2 24 132-155 349-372 (379)
367 PTZ00258 GTP-binding protein; 38.2 32 0.00069 33.5 3.3 76 73-169 220-320 (390)
368 PRK10818 cell division inhibit 38.0 1.5E+02 0.0033 26.2 7.4 115 25-153 132-248 (270)
369 KOG3929 Uncharacterized conser 36.3 83 0.0018 29.8 5.5 19 69-87 186-204 (363)
370 cd02038 FleN-like FleN is a me 35.4 80 0.0017 25.4 4.8 49 23-85 61-109 (139)
371 PRK13233 nifH nitrogenase redu 35.3 2.2E+02 0.0048 25.3 8.1 104 28-154 143-250 (275)
372 COG4963 CpaE Flp pilus assembl 34.9 1.1E+02 0.0023 29.8 6.2 58 16-86 227-284 (366)
373 cd02036 MinD Bacterial cell di 34.1 2.2E+02 0.0047 22.9 7.3 50 23-87 79-128 (179)
374 PF05049 IIGP: Interferon-indu 34.1 30 0.00065 33.6 2.4 86 2-108 90-181 (376)
375 KOG1249 Predicted GTPases [Gen 30.9 46 0.001 34.0 3.1 21 131-151 190-210 (572)
376 PF08438 MMR_HSR1_C: GTPase of 30.0 35 0.00076 27.5 1.8 28 79-116 1-28 (109)
377 cd02067 B12-binding B12 bindin 29.6 1E+02 0.0022 23.9 4.4 29 29-57 49-77 (119)
378 PF08468 MTS_N: Methyltransfer 29.0 1.2E+02 0.0026 25.6 4.9 42 27-84 68-109 (155)
379 COG2759 MIS1 Formyltetrahydrof 28.0 1.2E+02 0.0027 30.6 5.5 47 42-111 353-399 (554)
380 PF09827 CRISPR_Cas2: CRISPR a 27.8 56 0.0012 23.8 2.4 24 31-54 3-26 (78)
381 CHL00175 minD septum-site dete 26.5 2.5E+02 0.0055 25.0 6.9 109 24-154 144-255 (281)
382 cd00477 FTHFS Formyltetrahydro 25.6 1.2E+02 0.0025 31.0 4.9 50 43-116 341-390 (524)
383 TIGR00991 3a0901s02IAP34 GTP-b 25.5 2.1E+02 0.0045 27.2 6.3 50 28-88 118-168 (313)
384 TIGR03371 cellulose_yhjQ cellu 25.3 2.9E+02 0.0063 23.7 6.9 51 23-86 131-181 (246)
385 PRK11670 antiporter inner memb 25.1 6.1E+02 0.013 24.2 10.2 108 28-156 239-354 (369)
386 PRK02261 methylaspartate mutas 25.0 3.8E+02 0.0083 21.9 9.1 62 33-116 57-118 (137)
387 PF01939 DUF91: Protein of unk 23.7 1.2E+02 0.0026 27.6 4.2 71 19-116 135-209 (228)
388 PRK13507 formate--tetrahydrofo 23.5 1.4E+02 0.003 30.8 5.0 46 43-111 386-431 (587)
389 KOG0085 G protein subunit Galp 23.4 3.8E+02 0.0082 25.2 7.4 23 132-154 329-351 (359)
390 PTZ00222 60S ribosomal protein 23.0 68 0.0015 29.8 2.5 41 28-86 148-188 (263)
391 COG0523 Putative GTPases (G3E 21.9 2.1E+02 0.0046 27.1 5.7 57 29-110 117-174 (323)
392 cd07379 MPP_239FB Homo sapiens 21.9 1.3E+02 0.0029 23.7 3.8 29 26-54 17-45 (135)
393 COG4108 PrfC Peptide chain rel 21.8 2.5E+02 0.0055 28.5 6.3 75 12-111 87-163 (528)
394 COG0012 Predicted GTPase, prob 21.6 1.2E+02 0.0025 29.7 3.9 38 73-116 206-243 (372)
395 cd03112 CobW_like The function 21.6 1.2E+02 0.0027 25.0 3.6 40 28-85 118-158 (158)
396 TIGR01281 DPOR_bchL light-inde 21.3 5.7E+02 0.012 22.5 9.6 48 26-85 136-184 (268)
397 PF03875 Statherin: Statherin; 21.0 75 0.0016 21.2 1.7 31 185-215 3-35 (42)
398 cd02117 NifH_like This family 20.8 5.3E+02 0.011 21.9 8.3 70 27-119 140-210 (212)
399 cd03111 CpaE_like This protein 20.6 2.2E+02 0.0047 21.8 4.7 48 23-82 59-106 (106)
400 PTZ00365 60S ribosomal protein 20.2 88 0.0019 29.1 2.6 42 28-87 148-189 (266)
401 TIGR03677 rpl7ae 50S ribosomal 20.1 74 0.0016 25.6 1.9 42 28-87 42-83 (117)
No 1
>PLN00023 GTP-binding protein; Provisional
Probab=100.00 E-value=1.4e-62 Score=457.44 Aligned_cols=245 Identities=75% Similarity=1.198 Sum_probs=213.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||..|++.+. ...+.||++++|+|+|||+++++||++|.+|+++|..+..+++|..++.+++.++|+|||||
T Consensus 87 IWDTAGqErfr-------sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 87 LWDVSGHERYK-------DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred EEECCCChhhh-------hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 56666665443 23457999999999999999999999999999999987655544444444445799999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccCCCC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEM 161 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s~~~ 161 (255)
|+||..+.++.+..+...+++++||+++|++++.+|+|++|+|||+||+.++||+++..+|++.++|++|++++||+++.
T Consensus 160 K~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (334)
T PLN00023 160 KADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSDEL 239 (334)
T ss_pred CccccccccccccccccHHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcccC
Confidence 99997653222222234489999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCccccc-cCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCcccccCCccCCcCCCC
Q 025248 162 PAPNPWSISPTHKPIQRLDENSSDDDKFYS-SGYSSDP--YNMLPPLPAQRNLTPPPTLYPQQPVSVQENYNLPRFSLTG 238 (255)
Q Consensus 162 ~~p~~~s~sp~~~~~~~~~~~~~d~d~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (255)
++|+|||++|++.++.++ ++.+|+|+||+ ++|+|++ ||+|+|||||||+||||++|||||||+.|||+|||||+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PLN00023 240 PAPSPWSLSPQRSSQRLD-ENTSDDDQFYKRTSLAGDPYKYNTLPPLPAQRNLTPPPTLYPQQPVSSSENYRIPRFSLSS 318 (334)
T ss_pred CCCCCcccCCCCcccccc-ccccchhhhhhhccccCCcccccCCCCCcccccCCCCCccccCCCCCchhccccccccccC
Confidence 999999999988866666 56666666666 9999999 9999999999999999999999999999999999999999
Q ss_pred CccccccccccccCCCC
Q 025248 239 SQEISSSARSKRTDINV 255 (255)
Q Consensus 239 ~~~~~~~~~~~~~~~~~ 255 (255)
++++++ +|++|+||||
T Consensus 319 ~~~~~~-~~~~~~~~~~ 334 (334)
T PLN00023 319 SPESSN-ARSKRMDINV 334 (334)
T ss_pred Cccccc-ccccccccCC
Confidence 999999 9999999997
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-24 Score=189.06 Aligned_cols=115 Identities=23% Similarity=0.432 Sum_probs=103.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|||-+- ..+.+|||+|||||||||+|+++||++|..|+.|+.++. ..++|++||||
T Consensus 62 IWDTAGQERFr-------tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~------------~~~v~~lLVGN 122 (205)
T KOG0084|consen 62 IWDTAGQERFR-------TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA------------SENVPKLLVGN 122 (205)
T ss_pred eeeccccHHHh-------hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc------------cCCCCeEEEee
Confidence 48888887444 356789999999999999999999999999999999974 44599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+||.+. +.|+. ++++.|+.++++..|+| ||||++.||+++|..+...|.++.-
T Consensus 123 K~Dl~~~--~~v~~----~~a~~fa~~~~~~~f~E---------------TSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 123 KCDLTEK--RVVST----EEAQEFADELGIPIFLE---------------TSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred ccccHhh--eecCH----HHHHHHHHhcCCcceee---------------cccCCccCHHHHHHHHHHHHHHhcc
Confidence 9999988 99999 99999999999844999 9999999999999999999987653
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-24 Score=189.70 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=101.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|||-+- -.++.|||+|+|+|||||+|++.||+++..|+..|.++. ...++++||||
T Consensus 65 iWDtaGQerf~-------ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a------------~~~v~~~LvGN 125 (207)
T KOG0078|consen 65 IWDTAGQERFR-------TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA------------SDDVVKILVGN 125 (207)
T ss_pred EEEcccchhHH-------HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC------------CCCCcEEEeec
Confidence 48888877332 356789999999999999999999999999999999974 23599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||..+ |+|+. +.++++|+++|+ .|+| ||||+|.||+|+|..|++.+..+.
T Consensus 126 K~D~~~~--R~V~~----e~ge~lA~e~G~-~F~E---------------tSAk~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 126 KCDLEEK--RQVSK----ERGEALAREYGI-KFFE---------------TSAKTNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred ccccccc--ccccH----HHHHHHHHHhCC-eEEE---------------ccccCCCCHHHHHHHHHHHHHhhc
Confidence 9999997 99999 999999999997 9999 999999999999999999998754
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.6e-24 Score=186.70 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=103.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|.|. +..++|||||+++|+|||+|+.+||..++.|++++.+.. ..++-|.||||
T Consensus 58 IWDTAGQERy~-------slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~------------~~~~vialvGN 118 (200)
T KOG0092|consen 58 IWDTAGQERYH-------SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA------------SPNIVIALVGN 118 (200)
T ss_pred EEEcCCccccc-------ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC------------CCCeEEEEecc
Confidence 49999999654 456789999999999999999999999999999999863 35588999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhcc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 157 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~ 157 (255)
|+||... |.|.. +++..+|+..|+ .|+| +|||+|.||++.|..|++.|.+....
T Consensus 119 K~DL~~~--R~V~~----~ea~~yAe~~gl-l~~E---------------TSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 119 KADLLER--REVEF----EEAQAYAESQGL-LFFE---------------TSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred hhhhhhc--ccccH----HHHHHHHHhcCC-EEEE---------------EecccccCHHHHHHHHHHhccCcccc
Confidence 9999987 99999 999999999998 8999 99999999999999999998776543
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.9e-24 Score=185.36 Aligned_cols=121 Identities=21% Similarity=0.322 Sum_probs=105.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|.+- ..+++|||+|.|+|||||+|+++||..|..|+.+++++. ..++.|+||||
T Consensus 59 iwDtaGqe~fr-------sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~------------~~NmvImLiGN 119 (216)
T KOG0098|consen 59 IWDTAGQESFR-------SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS------------NENMVIMLIGN 119 (216)
T ss_pred EEecCCcHHHH-------HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc------------CCCcEEEEEcc
Confidence 37776666432 356789999999999999999999999999999999973 45699999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccCCCC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEM 161 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s~~~ 161 (255)
|+||... |.|+. +++++||+++|| .|+| ||||++.||+|+|..+...|+++....-..
T Consensus 120 KsDL~~r--R~Vs~----EEGeaFA~ehgL-ifmE---------------TSakt~~~VEEaF~nta~~Iy~~~q~g~~~ 177 (216)
T KOG0098|consen 120 KSDLEAR--REVSK----EEGEAFAREHGL-IFME---------------TSAKTAENVEEAFINTAKEIYRKIQDGVFD 177 (216)
T ss_pred hhhhhcc--ccccH----HHHHHHHHHcCc-eeeh---------------hhhhhhhhHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998 99999 999999999998 8899 999999999999999999999987655444
Q ss_pred CC
Q 025248 162 PA 163 (255)
Q Consensus 162 ~~ 163 (255)
+.
T Consensus 178 ~~ 179 (216)
T KOG0098|consen 178 DI 179 (216)
T ss_pred cc
Confidence 43
No 6
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.3e-23 Score=181.39 Aligned_cols=113 Identities=19% Similarity=0.362 Sum_probs=101.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||+.|||-|- + -+..|||+|.|+|||||+|++.||+++..|+.|++.|. ..+|+|+||||
T Consensus 67 IWDTAGQERyr-A------itSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdha------------d~nivimLvGN 127 (222)
T KOG0087|consen 67 IWDTAGQERYR-A------ITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHA------------DSNIVIMLVGN 127 (222)
T ss_pred eecccchhhhc-c------ccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcC------------CCCeEEEEeec
Confidence 69999999664 2 35579999999999999999999999999999999974 45699999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... |.|.. +++..+|++.++ .|+| +||.++.||+++|..++.+|.+..
T Consensus 128 K~DL~~l--raV~t----e~~k~~Ae~~~l-~f~E---------------tSAl~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 128 KSDLNHL--RAVPT----EDGKAFAEKEGL-FFLE---------------TSALDATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred chhhhhc--cccch----hhhHhHHHhcCc-eEEE---------------ecccccccHHHHHHHHHHHHHHHH
Confidence 9999987 89998 999999999997 8999 999999999999999998887643
No 7
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.88 E-value=6.3e-23 Score=174.51 Aligned_cols=128 Identities=21% Similarity=0.358 Sum_probs=109.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|.+-- .-+.|||+++|+|||||+||++||+.++.|..|++.-. +..+-+++|||
T Consensus 66 IWDTAGQErfHA-------LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml------------Gnei~l~IVGN 126 (218)
T KOG0088|consen 66 IWDTAGQERFHA-------LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML------------GNEIELLIVGN 126 (218)
T ss_pred eeeccchHhhhc-------cCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh------------CCeeEEEEecC
Confidence 599999986552 33479999999999999999999999999999999842 45689999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccCCCC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEM 161 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s~~~ 161 (255)
|+||..+ |+|+. ++|..+|+..|. .|+| ||||++.+|.|+|+.+...+++.. +...
T Consensus 127 KiDLEee--R~Vt~----qeAe~YAesvGA-~y~e---------------TSAk~N~Gi~elFe~Lt~~MiE~~--s~~q 182 (218)
T KOG0088|consen 127 KIDLEEE--RQVTR----QEAEAYAESVGA-LYME---------------TSAKDNVGISELFESLTAKMIEHS--SQRQ 182 (218)
T ss_pred cccHHHh--hhhhH----HHHHHHHHhhch-hhee---------------cccccccCHHHHHHHHHHHHHHHh--hhcc
Confidence 9999988 99998 999999999998 8999 999999999999999999999875 3444
Q ss_pred CCCCCCCCCCC
Q 025248 162 PAPNPWSISPT 172 (255)
Q Consensus 162 ~~p~~~s~sp~ 172 (255)
++.+|.++.|.
T Consensus 183 r~~~~~s~qpp 193 (218)
T KOG0088|consen 183 RTRSPLSTQPP 193 (218)
T ss_pred cccCCcCCCCC
Confidence 55555555543
No 8
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.88 E-value=2.5e-22 Score=173.75 Aligned_cols=120 Identities=25% Similarity=0.435 Sum_probs=106.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|-+--.|.+ ||||||+++||||+++++||++|..|.+|+....... .| ...|+||+||
T Consensus 62 iWDTAGQERFqsLg~a-------FYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~------~P--e~FPFVilGN 126 (210)
T KOG0394|consen 62 IWDTAGQERFQSLGVA-------FYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQ------DP--ETFPFVILGN 126 (210)
T ss_pred EEecccHHHhhhcccc-------eecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCC------CC--CcccEEEEcc
Confidence 6999999977765644 9999999999999999999999999999999875433 22 3489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+.+...|+|+. +.|++||+..|-.+|+| ||||++.||++||+.+.+.++...
T Consensus 127 KiD~~~~~~r~VS~----~~Aq~WC~s~gnipyfE---------------tSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 127 KIDVDGGKSRQVSE----KKAQTWCKSKGNIPYFE---------------TSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred cccCCCCccceeeH----HHHHHHHHhcCCceeEE---------------ecccccccHHHHHHHHHHHHHhcc
Confidence 99998866699998 99999999999888888 999999999999999999998754
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.87 E-value=4.8e-22 Score=171.52 Aligned_cols=112 Identities=21% Similarity=0.396 Sum_probs=98.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+.. ..+.||++||++|||||++++.||+++..|+.++..+ ...+|+|||||
T Consensus 59 iwDt~G~~~~~~-------l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~-------------~~~~piilVGN 118 (189)
T cd04121 59 LWDTSGQGRFCT-------IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-------------APGVPKILVGN 118 (189)
T ss_pred EEeCCCcHHHHH-------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-------------CCCCCEEEEEE
Confidence 688888775552 4567999999999999999999999999999999774 13499999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++++++++.++ .|+| |||++|.||+++|+++++.++.++
T Consensus 119 K~DL~~~--~~v~~----~~~~~~a~~~~~-~~~e---------------~SAk~g~~V~~~F~~l~~~i~~~~ 170 (189)
T cd04121 119 RLHLAFK--RQVAT----EQAQAYAERNGM-TFFE---------------VSPLCNFNITESFTELARIVLMRH 170 (189)
T ss_pred Cccchhc--cCCCH----HHHHHHHHHcCC-EEEE---------------ecCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999876 78887 899999999996 8999 999999999999999999887654
No 10
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3e-22 Score=168.52 Aligned_cols=114 Identities=21% Similarity=0.331 Sum_probs=101.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|-+-. .+..|||+|+|+|||||+||.+||..++.|+..|..+. ..++|+|||||
T Consensus 74 iwDTagqEryrt-------iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktys------------w~naqvilvgn 134 (193)
T KOG0093|consen 74 IWDTAGQERYRT-------ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS------------WDNAQVILVGN 134 (193)
T ss_pred EEecccchhhhH-------HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee------------ccCceEEEEec
Confidence 477777775432 35679999999999999999999999999999998863 55699999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
||||.++ |.|+. +.++++++++|+ .||| +|||++.||+.+|+.++..|.++..
T Consensus 135 KCDmd~e--Rvis~----e~g~~l~~~LGf-efFE---------------tSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 135 KCDMDSE--RVISH----ERGRQLADQLGF-EFFE---------------TSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred ccCCccc--eeeeH----HHHHHHHHHhCh-HHhh---------------hcccccccHHHHHHHHHHHHHHHhh
Confidence 9999998 99999 999999999998 9999 9999999999999999998887653
No 11
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.86 E-value=3.8e-22 Score=169.97 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=106.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|-+-. .+++|||+|.|+|+|||+|.++||.+|..|++|+..+.+ ..+|..+||||
T Consensus 64 iWDTAGqErFRt-------LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-----------n~diikmlVgN 125 (209)
T KOG0080|consen 64 IWDTAGQERFRT-------LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST-----------NPDIIKMLVGN 125 (209)
T ss_pred EEeccchHhhhc-------cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC-----------CccHhHhhhcc
Confidence 588888886553 678999999999999999999999999999999998753 34588999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccCCCC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEM 161 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s~~~ 161 (255)
|+|...+ |.|+. +++..||+++++ .|+| ||||+.+||+.+|++++..|++...+.++.
T Consensus 126 KiDkes~--R~V~r----eEG~kfAr~h~~-LFiE---------------~SAkt~~~V~~~FeelveKIi~tp~l~~~~ 183 (209)
T KOG0080|consen 126 KIDKESE--RVVDR----EEGLKFARKHRC-LFIE---------------CSAKTRENVQCCFEELVEKIIETPSLWEEG 183 (209)
T ss_pred cccchhc--ccccH----HHHHHHHHhhCc-EEEE---------------cchhhhccHHHHHHHHHHHHhcCcchhhcc
Confidence 9998776 99999 999999999998 7999 999999999999999999999977766543
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.86 E-value=1.1e-21 Score=167.30 Aligned_cols=112 Identities=16% Similarity=0.293 Sum_probs=92.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+. .....||++|+|+|||||+++++||+++ ..|+.++.+. ..++|++|||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~-------------~~~~piilvg 112 (176)
T cd04133 53 LWDTAGQEDYN-------RLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHY-------------APNVPIVLVG 112 (176)
T ss_pred EEECCCCcccc-------ccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 68777776443 2345699999999999999999999999 6999999874 1249999999
Q ss_pred eCCCCCCCC--------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 81 NKADVAAKE--------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 81 NK~DL~~~~--------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
||+||.+.. .+.|+. +++.++++++++..|+| ||||+|.||+++|+.++++++
T Consensus 113 nK~Dl~~~~~~~~~~~~~~~v~~----~~~~~~a~~~~~~~~~E---------------~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 113 TKLDLRDDKQYLADHPGASPITT----AQGEELRKQIGAAAYIE---------------CSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred eChhhccChhhhhhccCCCCCCH----HHHHHHHHHcCCCEEEE---------------CCCCcccCHHHHHHHHHHHHh
Confidence 999997641 134776 89999999999756999 999999999999999998764
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=2.8e-21 Score=168.63 Aligned_cols=112 Identities=21% Similarity=0.364 Sum_probs=94.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||++|||+|||||+++++||+++..|+.++.+.. ..++|+|||||
T Consensus 53 iwDtaGqe~~~-------~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~------------~~~~piilVgN 113 (202)
T cd04120 53 IWDTAGQERFN-------SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA------------SEDAELLLVGN 113 (202)
T ss_pred EEeCCCchhhH-------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 68887776443 235679999999999999999999999999999887642 23599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHc-CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~-gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... +.|+. +++.+++++. ++ .|+| ||||+|.||+++|+++++.+.++
T Consensus 114 K~DL~~~--~~v~~----~~~~~~a~~~~~~-~~~e---------------tSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 114 KLDCETD--REISR----QQGEKFAQQITGM-RFCE---------------ASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred Ccccccc--cccCH----HHHHHHHHhcCCC-EEEE---------------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999876 77887 8888999886 54 7899 99999999999999999988654
No 14
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=167.33 Aligned_cols=116 Identities=19% Similarity=0.353 Sum_probs=102.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||+.|+|.+- ..+++|||++-|+++|||+||++||+.+..|+.|...+.. +..++.++|||.
T Consensus 62 lwdtagqerfr-------sitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q----------~P~k~VFlLVGh 124 (213)
T KOG0091|consen 62 LWDTAGQERFR-------SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ----------GPDKVVFLLVGH 124 (213)
T ss_pred EeeccchHHHH-------HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC----------CCCeeEEEEecc
Confidence 58888887543 3578999999999999999999999999999999988631 234588999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+||... |+|+. ++|+.+|+.+|+ .|+| ||||+|.||+|+|..+.+.+..+..
T Consensus 125 KsDL~Sq--RqVt~----EEaEklAa~hgM-~FVE---------------TSak~g~NVeEAF~mlaqeIf~~i~ 177 (213)
T KOG0091|consen 125 KSDLQSQ--RQVTA----EEAEKLAASHGM-AFVE---------------TSAKNGCNVEEAFDMLAQEIFQAIQ 177 (213)
T ss_pred ccchhhh--ccccH----HHHHHHHHhcCc-eEEE---------------ecccCCCcHHHHHHHHHHHHHHHHh
Confidence 9999988 99999 999999999998 9999 9999999999999999999887653
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.85 E-value=2.5e-21 Score=165.84 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=94.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.++. ..+.||++||++|||||++++.||+++ ..|+.++.++ ..++|+||||
T Consensus 57 iwDtaG~e~~~~-------~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~-------------~~~~piilVg 116 (182)
T cd04172 57 LWDTSGSPYYDN-------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-------------CPNTKMLLVG 116 (182)
T ss_pred EEECCCchhhHh-------hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-------------CCCCCEEEEe
Confidence 688888776552 245799999999999999999999998 7999999885 1248999999
Q ss_pred eCCCCCCC----------CCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC-HHHHHHHHHH
Q 025248 81 NKADVAAK----------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~----------~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n-v~e~f~~l~~ 149 (255)
||+||... ..+.|+. +++.++|+++++..|+| ||||+|.| |+++|..+++
T Consensus 117 NK~DL~~~~~~~~~~~~~~~~~v~~----~~~~~~a~~~~~~~~~E---------------~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 117 CKSDLRTDLTTLVELSNHRQTPVSY----DQGANMAKQIGAATYIE---------------CSALQSENSVRDIFHVATL 177 (182)
T ss_pred EChhhhcChhhHHHHHhcCCCCCCH----HHHHHHHHHcCCCEEEE---------------CCcCCCCCCHHHHHHHHHH
Confidence 99999752 1256887 89999999999768999 99999998 9999999988
Q ss_pred HHH
Q 025248 150 MLI 152 (255)
Q Consensus 150 ~li 152 (255)
.++
T Consensus 178 ~~~ 180 (182)
T cd04172 178 ACV 180 (182)
T ss_pred HHh
Confidence 654
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=3.9e-21 Score=163.56 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=94.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.++. ..+.||++||++|+|||+++++||+++ ..|+.++.++ ..++|+||||
T Consensus 53 iwDt~G~~~~~~-------~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~-------------~~~~~iilVg 112 (178)
T cd04131 53 LWDTSGSPYYDN-------VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEF-------------CPNTKVLLVG 112 (178)
T ss_pred EEECCCchhhhh-------cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHH-------------CCCCCEEEEE
Confidence 688888876652 345699999999999999999999996 7999999885 1248999999
Q ss_pred eCCCCCCC----------CCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC-HHHHHHHHHH
Q 025248 81 NKADVAAK----------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~----------~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n-v~e~f~~l~~ 149 (255)
||+||... ..+.|+. +++.++|+++++..|+| ||||+|.| |+++|..+++
T Consensus 113 nK~DL~~~~~~~~~~~~~~~~~v~~----~e~~~~a~~~~~~~~~E---------------~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 113 CKTDLRTDLSTLMELSHQRQAPVSY----EQGCAIAKQLGAEIYLE---------------CSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred EChhhhcChhHHHHHHhcCCCCCCH----HHHHHHHHHhCCCEEEE---------------CccCcCCcCHHHHHHHHHH
Confidence 99999642 1145787 89999999999767999 99999995 9999999998
Q ss_pred HHH
Q 025248 150 MLI 152 (255)
Q Consensus 150 ~li 152 (255)
..+
T Consensus 174 ~~~ 176 (178)
T cd04131 174 ACL 176 (178)
T ss_pred HHh
Confidence 655
No 17
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.84 E-value=9.8e-21 Score=161.93 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=93.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+.. ..+.||++||++|+|||+++++||+++. .|+.++..+ ..++|++|||
T Consensus 55 i~Dt~G~e~~~~-------l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~-------------~~~~piilvg 114 (191)
T cd01875 55 LWDTAGQEEYDR-------LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH-------------CPNVPILLVG 114 (191)
T ss_pred EEECCCchhhhh-------hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------CCCCCEEEEE
Confidence 688888876552 3457999999999999999999999997 799888764 2349999999
Q ss_pred eCCCCCCCCC----------CccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKEG----------TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~~----------r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||..... +.|+. +++.++|++.+...|+| ||||+|.||+++|+++++.
T Consensus 115 NK~DL~~~~~~~~~~~~~~~~~v~~----~~~~~~a~~~~~~~~~e---------------~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 115 TKKDLRNDADTLKKLKEQGQAPITP----QQGGALAKQIHAVKYLE---------------CSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred eChhhhcChhhHHHHhhccCCCCCH----HHHHHHHHHcCCcEEEE---------------eCCCCCCCHHHHHHHHHHH
Confidence 9999975411 23555 78999999998668999 9999999999999999998
Q ss_pred HHH
Q 025248 151 LIR 153 (255)
Q Consensus 151 li~ 153 (255)
++.
T Consensus 176 ~~~ 178 (191)
T cd01875 176 VLN 178 (191)
T ss_pred Hhc
Confidence 865
No 18
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=1.1e-20 Score=163.61 Aligned_cols=107 Identities=17% Similarity=0.248 Sum_probs=90.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||+.|++.+ ..+.||++||++|||||++++.||+++. .|+.++... ..++|+||||
T Consensus 70 iwDTaG~~~~---------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~-------------~~~~piilvg 127 (195)
T cd01873 70 LWDTFGDHDK---------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF-------------CPRVPVILVG 127 (195)
T ss_pred EEeCCCChhh---------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 6888887632 2356999999999999999999999997 699998774 1248999999
Q ss_pred eCCCCCCC-----------------CCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHH
Q 025248 81 NKADVAAK-----------------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA 143 (255)
Q Consensus 81 NK~DL~~~-----------------~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~ 143 (255)
||+||... ..+.|+. ++++++|+++|+ .|+| ||||+|.||+++
T Consensus 128 NK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~----~e~~~~a~~~~~-~~~E---------------~SAkt~~~V~e~ 187 (195)
T cd01873 128 CKLDLRYADLDEVNRARRPLARPIKNADILPP----ETGRAVAKELGI-PYYE---------------TSVVTQFGVKDV 187 (195)
T ss_pred EchhccccccchhhhcccccccccccCCccCH----HHHHHHHHHhCC-EEEE---------------cCCCCCCCHHHH
Confidence 99999742 1267887 899999999998 9999 999999999999
Q ss_pred HHHHHHH
Q 025248 144 VMKFFRM 150 (255)
Q Consensus 144 f~~l~~~ 150 (255)
|+.+++.
T Consensus 188 F~~~~~~ 194 (195)
T cd01873 188 FDNAIRA 194 (195)
T ss_pred HHHHHHh
Confidence 9988764
No 19
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.84 E-value=4.6e-21 Score=161.55 Aligned_cols=112 Identities=22% Similarity=0.363 Sum_probs=97.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|-+-. .+..||++.||+|+|||+|+.+||.++++|+++|.+++ ..+|-+||||
T Consensus 61 IwDtAGqErFrt-------itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-------------dsv~~vLVGN 120 (198)
T KOG0079|consen 61 IWDTAGQERFRT-------ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-------------DSVPKVLVGN 120 (198)
T ss_pred EeecccHHHHHH-------HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-------------ccccceeccc
Confidence 366666654331 24569999999999999999999999999999999863 2489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|.|+.+. |.|.. ++|+.||..+|+ .+|| +|||++.|++..|.-|.+.+++..
T Consensus 121 K~d~~~R--rvV~t----~dAr~~A~~mgi-e~FE---------------TSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 121 KNDDPER--RVVDT----EDARAFALQMGI-ELFE---------------TSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred CCCCccc--eeeeh----HHHHHHHHhcCc-hhee---------------hhhhhcccchHHHHHHHHHHHHHH
Confidence 9999987 88888 999999999997 9999 999999999999999998888754
No 20
>PTZ00099 rab6; Provisional
Probab=99.84 E-value=2.6e-20 Score=158.94 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=97.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+.. ....||++||++|||||+++++||+.+..|+.++.... ..++|+|||||
T Consensus 33 iwDt~G~e~~~~-------~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~------------~~~~piilVgN 93 (176)
T PTZ00099 33 LWDTAGQERFRS-------LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER------------GKDVIIALVGN 93 (176)
T ss_pred EEECCChHHhhh-------ccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCeEEEEEE
Confidence 788888875542 35569999999999999999999999999999998742 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhcc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 157 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~ 157 (255)
|+||... +.|+. +++..+++.++. .|+| ||||+|.||+++|+++++.+.+....
T Consensus 94 K~DL~~~--~~v~~----~e~~~~~~~~~~-~~~e---------------~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 94 KTDLGDL--RKVTY----EEGMQKAQEYNT-MFHE---------------TSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred Ccccccc--cCCCH----HHHHHHHHHcCC-EEEE---------------EECCCCCCHHHHHHHHHHHHHhcccc
Confidence 9999865 66776 788899988886 7899 99999999999999999998775543
No 21
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.8e-21 Score=162.35 Aligned_cols=114 Identities=20% Similarity=0.324 Sum_probs=102.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|.+- ..+|.|||||-|++||||+|+++||+.|..|+..++... ..+|.|||+||
T Consensus 62 IWDTAGQErFR-------SVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA------------s~nIvviL~Gn 122 (214)
T KOG0086|consen 62 IWDTAGQERFR-------SVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA------------SPNIVVILCGN 122 (214)
T ss_pred EeecccHHHHH-------HHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC------------CCcEEEEEeCC
Confidence 48887777443 357899999999999999999999999999999998743 44589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|.||..+ |+|+. .++.+||++..+ .+.| +||++|+||+|+|-...+.|+.++.
T Consensus 123 KkDL~~~--R~Vtf----lEAs~FaqEnel-~flE---------------TSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 123 KKDLDPE--REVTF----LEASRFAQENEL-MFLE---------------TSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred hhhcChh--hhhhH----HHHHhhhcccce-eeee---------------ecccccccHHHHHHHHHHHHHHHHh
Confidence 9999988 99999 999999999997 8899 9999999999999999999998875
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=2e-20 Score=167.05 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=96.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+.. ..+.||++||++|||||+++++||+++ ..|+.++... ...+|+||||
T Consensus 65 iwDTaG~e~~~~-------~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~-------------~~~~piilVg 124 (232)
T cd04174 65 LWDTSGSPYYDN-------VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDY-------------CPSTRILLIG 124 (232)
T ss_pred EEeCCCchhhHH-------HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 788888775552 345799999999999999999999985 7999999874 1248999999
Q ss_pred eCCCCCCC----------CCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCC-CHHHHHHHHHH
Q 025248 81 NKADVAAK----------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~----------~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~-nv~e~f~~l~~ 149 (255)
||+||... ..+.|+. +++.+||+++++..|+| ||||+|. ||+++|..+++
T Consensus 125 NK~DL~~~~~~~~~l~~~~~~~Vs~----~e~~~~a~~~~~~~~~E---------------tSAktg~~~V~e~F~~~~~ 185 (232)
T cd04174 125 CKTDLRTDLSTLMELSNQKQAPISY----EQGCALAKQLGAEVYLE---------------CSAFTSEKSIHSIFRSASL 185 (232)
T ss_pred ECcccccccchhhhhccccCCcCCH----HHHHHHHHHcCCCEEEE---------------ccCCcCCcCHHHHHHHHHH
Confidence 99999642 1256887 89999999999756999 9999998 89999999999
Q ss_pred HHHHHh
Q 025248 150 MLIRRR 155 (255)
Q Consensus 150 ~li~~~ 155 (255)
.++++.
T Consensus 186 ~~~~~~ 191 (232)
T cd04174 186 LCLNKL 191 (232)
T ss_pred HHHHhc
Confidence 887654
No 23
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.83 E-value=3.1e-21 Score=160.48 Aligned_cols=114 Identities=19% Similarity=0.303 Sum_probs=101.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|||.+- ..+..|||+||+.+|+||++++.||++++.|+.+|.+++ ...+.+.|+||
T Consensus 51 iwdtagqerfr-------svt~ayyrda~allllydiankasfdn~~~wlsei~ey~------------k~~v~l~llgn 111 (192)
T KOG0083|consen 51 IWDTAGQERFR-------SVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA------------KEAVALMLLGN 111 (192)
T ss_pred EeeccchHHHh-------hhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH------------HhhHhHhhhcc
Confidence 48888877444 234579999999999999999999999999999999974 33488999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+|+..+ |.|.. ++++.+++.+++ +|+| +|||+|.||+.+|..+.+++.+..+
T Consensus 112 k~d~a~e--r~v~~----ddg~kla~~y~i-pfme---------------tsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 112 KCDLAHE--RAVKR----DDGEKLAEAYGI-PFME---------------TSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred ccccchh--hcccc----chHHHHHHHHCC-Ccee---------------ccccccccHhHHHHHHHHHHHHhcc
Confidence 9999988 89998 999999999997 9999 9999999999999999999988765
No 24
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.2e-20 Score=164.56 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=98.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|||-+- ..++.|||+++++|+|||++|+.||++..+|++++++.. +...+-|+||||
T Consensus 75 lWDTAGQERFr-------slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~-----------gs~~viI~LVGn 136 (221)
T KOG0094|consen 75 LWDTAGQERFR-------SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRER-----------GSDDVIIFLVGN 136 (221)
T ss_pred EEecccHHHHh-------hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhcc-----------CCCceEEEEEcc
Confidence 59999988655 357899999999999999999999999999999999842 233488999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|.||.++ |+++. +++...|++++. .|+| +|||.|.||++.|.++...+.+
T Consensus 137 KtDL~dk--rqvs~----eEg~~kAkel~a-~f~e---------------tsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 137 KTDLSDK--RQVSI----EEGERKAKELNA-EFIE---------------TSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred cccccch--hhhhH----HHHHHHHHHhCc-EEEE---------------ecccCCCCHHHHHHHHHHhccC
Confidence 9999998 99998 999999999998 8999 9999999999888886665543
No 25
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.82 E-value=4.5e-20 Score=153.84 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=88.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++. ..|++++|++|+|||+++++||+++..|+.++..+. ....+|++||||
T Consensus 51 i~D~~g~~~------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~-----------~~~~~piilvgn 107 (158)
T cd04103 51 IRDEGGAPD------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR-----------NISEIPLILVGT 107 (158)
T ss_pred EEECCCCCc------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEee
Confidence 577776652 358999999999999999999999999999998752 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+||.....+.|+. +++.+++++.+...|+| ||||+|.||+++|..+++.
T Consensus 108 K~Dl~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 108 QDAISESNPRVIDD----ARARQLCADMKRCSYYE---------------TCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHhhhcCCcccCH----HHHHHHHHHhCCCcEEE---------------EecCCCCCHHHHHHHHHhh
Confidence 99996433377887 88899998875348999 9999999999999988764
No 26
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=1.4e-19 Score=155.38 Aligned_cols=118 Identities=25% Similarity=0.460 Sum_probs=97.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||++|+|+|+|||+++++||+++..|+.++...... .....+|+|||||
T Consensus 54 l~Dt~G~~~~~-------~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~--------~~~~~~piilv~N 118 (201)
T cd04107 54 LWDIAGQERFG-------GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL--------PNGEPIPCLLLAN 118 (201)
T ss_pred EEECCCchhhh-------hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc--------cCCCCCcEEEEEE
Confidence 67777775433 23567999999999999999999999999999998764211 1234689999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++.++++..++..|+| |||++|.||+++|+++++.+++..
T Consensus 119 K~Dl~~~--~~~~~----~~~~~~~~~~~~~~~~e---------------~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 119 KCDLKKR--LAKDG----EQMDQFCKENGFIGWFE---------------TSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred CCCcccc--cccCH----HHHHHHHHHcCCceEEE---------------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999865 56666 88999999999668999 999999999999999999998764
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.82 E-value=6.7e-20 Score=154.14 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=96.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. .....||+++|++|+|||++++.||+.+..|+..+.+.. ...++|++||||
T Consensus 54 i~Dt~G~~~~~-------~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-----------~~~~~piilvgN 115 (172)
T cd04141 54 ILDTAGQAEFT-------AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR-----------LTEDIPLVLVGN 115 (172)
T ss_pred EEeCCCchhhH-------HHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 68887776543 234579999999999999999999999999998887631 123599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.++. +++.++++..++ +|+| |||++|.||+++|+++++.++++.
T Consensus 116 K~Dl~~~--~~v~~----~~~~~~a~~~~~-~~~e---------------~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 116 KVDLESQ--RQVTT----EEGRNLAREFNC-PFFE---------------TSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred Chhhhhc--CccCH----HHHHHHHHHhCC-EEEE---------------EecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999876 77887 889999999987 8999 999999999999999999988754
No 28
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=7.6e-20 Score=151.04 Aligned_cols=111 Identities=23% Similarity=0.394 Sum_probs=93.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||+++|++|||||+++++||+.+..|+.++.... ...+|++||||
T Consensus 55 i~Dt~G~~~~~-------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~iiiv~n 115 (166)
T cd04122 55 IWDTAGQERFR-------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT------------NPNTVIFLIGN 115 (166)
T ss_pred EEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 67777765433 235679999999999999999999999999999987642 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||... +.++. +++.++++..++ .++| |||++|.||+++|.++++.+.+
T Consensus 116 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 116 KADLEAQ--RDVTY----EEAKQFADENGL-LFLE---------------CSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred Ccccccc--cCcCH----HHHHHHHHHcCC-EEEE---------------EECCCCCCHHHHHHHHHHHHhh
Confidence 9999876 67776 889999998886 8999 9999999999999999988765
No 29
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=1e-19 Score=151.54 Aligned_cols=113 Identities=20% Similarity=0.392 Sum_probs=95.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++++||+++..|+.++.... ...++|++||||
T Consensus 67 i~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piiiv~n 128 (180)
T cd04127 67 LWDTAGQERFR-------SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA-----------YCENPDIVLCGN 128 (180)
T ss_pred EEeCCChHHHH-------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEEe
Confidence 67777766433 235679999999999999999999999999999998742 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... +.++. +++.+++++.++ +++| +||++|.|++++|+++++.++++
T Consensus 129 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~e---------------~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 129 KADLEDQ--RQVSE----EQAKALADKYGI-PYFE---------------TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred Cccchhc--CccCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999876 67776 789999999996 8999 99999999999999999988765
No 30
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.2e-20 Score=157.42 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=102.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|.+- ..+..|||+|.|+||+||+|++.||-++..|+.+++.|. .. .+.-|||+||
T Consensus 71 lWDTAGQERFR-------SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA---------Yc--E~PDivlcGN 132 (219)
T KOG0081|consen 71 LWDTAGQERFR-------SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA---------YC--ENPDIVLCGN 132 (219)
T ss_pred eeccccHHHHH-------HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh---------cc--CCCCEEEEcC
Confidence 58887777443 356689999999999999999999999999999999864 22 2245999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFS 158 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s 158 (255)
|+||.+. |.|+. +++.++|+++|+ +|+| +||.+|.||+++++.++..++++....
T Consensus 133 K~DL~~~--R~Vs~----~qa~~La~kygl-PYfE---------------TSA~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 133 KADLEDQ--RVVSE----DQAAALADKYGL-PYFE---------------TSACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred ccchhhh--hhhhH----HHHHHHHHHhCC-Ceee---------------eccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99998 999999999997 9999 999999999999999999999887543
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.80 E-value=1.4e-19 Score=152.87 Aligned_cols=111 Identities=10% Similarity=0.152 Sum_probs=90.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+. .....||+++|++|||||+++++||+++. .|+.++..+ ..++|+||||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~-------------~~~~piilvg 112 (175)
T cd01874 53 LFDTAGQEDYD-------RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-------------CPKTPFLLVG 112 (175)
T ss_pred EEECCCccchh-------hhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 67777766443 12346999999999999999999999997 699998774 1248999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.|+. +++.+++++.+...|+| |||++|.||+++|+.+++.
T Consensus 113 nK~Dl~~~~~~~~~l~~~~~~~v~~----~~~~~~a~~~~~~~~~e---------------~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 113 TQIDLRDDPSTIEKLAKNKQKPITP----ETGEKLARDLKAVKYVE---------------CSALTQKGLKNVFDEAILA 173 (175)
T ss_pred ECHhhhhChhhHHHhhhccCCCcCH----HHHHHHHHHhCCcEEEE---------------ecCCCCCCHHHHHHHHHHH
Confidence 999996541 156776 88999999988658999 9999999999999999875
Q ss_pred H
Q 025248 151 L 151 (255)
Q Consensus 151 l 151 (255)
.
T Consensus 174 ~ 174 (175)
T cd01874 174 A 174 (175)
T ss_pred h
Confidence 4
No 32
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.80 E-value=3.7e-19 Score=157.55 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=94.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+.. ..+.||+++|++|+|||+++++||+++..|+..+.+.. ..++|+|||||
T Consensus 48 iwDt~G~e~~~~-------l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~------------~~~~piIlVgN 108 (220)
T cd04126 48 IWDTAGREQFHG-------LGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA------------NEDCLFAVVGN 108 (220)
T ss_pred EEeCCCcccchh-------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 688888775442 34569999999999999999999999999888887631 23589999999
Q ss_pred CCCCCCC-----------------CCCccCCccHHHHHHHHHHHcCC-------------CCeeecCCCCCCCCCCCCcc
Q 025248 82 KADVAAK-----------------EGTRGSSGNLVDAARQWVEKQGL-------------LPSSEELPLTESFPGGGGLI 131 (255)
Q Consensus 82 K~DL~~~-----------------~~r~Vs~~~l~e~a~~~a~~~gl-------------~~~~Ee~p~~e~~~~~~~~~ 131 (255)
|+||... ..+.|+. +++.+||++.+. ..|+|
T Consensus 109 K~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~----~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E--------------- 169 (220)
T cd04126 109 KLDLTEEGALAGQEKDAGDRVSPEDQRQVTL----EDAKAFYKRINKYKMLDEDLSPAAEKMCFE--------------- 169 (220)
T ss_pred CcccccccccccccccccccccccccccCCH----HHHHHHHHHhCccccccccccccccceEEE---------------
Confidence 9999751 1277887 899999998762 25777
Q ss_pred eeeecCCCHHHHHHHHHHHHHHH
Q 025248 132 AAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 132 tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|||++|.||+++|..+++.++..
T Consensus 170 ~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 170 TSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 33
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.79 E-value=3.2e-19 Score=150.48 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=90.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+. ...+.||+++|++|||||+++++||+++. .|+..+... ..++|+||||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-------------~~~~piilvg 112 (174)
T cd01871 53 LWDTAGQEDYD-------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-------------CPNTPIILVG 112 (174)
T ss_pred EEECCCchhhh-------hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEe
Confidence 68888776443 23456999999999999999999999996 799988764 2359999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.|+. +++.+++++++...|+| |||++|.|++++|+.+++.
T Consensus 113 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 113 TKLDLRDDKDTIEKLKEKKLTPITY----PQGLAMAKEIGAVKYLE---------------CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred eChhhccChhhHHHHhhccCCCCCH----HHHHHHHHHcCCcEEEE---------------ecccccCCHHHHHHHHHHh
Confidence 999996531 135676 88999999999668999 9999999999999988764
No 34
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.79 E-value=3.3e-19 Score=147.58 Aligned_cols=108 Identities=20% Similarity=0.336 Sum_probs=92.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++++||+.+..|+.++.... ..++|+++|||
T Consensus 53 i~D~~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~------------~~~~~iilvgn 113 (161)
T cd04117 53 IWDTAGQERYQ-------TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA------------PEGVQKILIGN 113 (161)
T ss_pred EEeCCCcHhHH-------hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 68887766443 235679999999999999999999999999999998742 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+||... +.++. +++..+++..++ +|+| ||||+|.||+++|.+|++.
T Consensus 114 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 114 KADEEQK--RQVGD----EQGNKLAKEYGM-DFFE---------------TSACTNSNIKESFTRLTEL 160 (161)
T ss_pred Ccccccc--cCCCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHhh
Confidence 9999876 77877 889999999885 8999 9999999999999999864
No 35
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=5.5e-19 Score=150.37 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=98.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+.. ..+.||+++|++|||||++++.||+++..|+..+...... ...++|+|||||
T Consensus 51 i~Dt~G~~~~~~-------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilvgN 114 (190)
T cd04144 51 VLDTAGQEEYTA-------LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDE---------SAADVPIMIVGN 114 (190)
T ss_pred EEECCCchhhHH-------HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc---------cCCCCCEEEEEE
Confidence 688888765442 3456999999999999999999999999999998774210 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFS 158 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s 158 (255)
|+|+... +.++. +++.++++..++ .|+| +||++|.||+++|+++++.+.+++...
T Consensus 115 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~e---------------~SAk~~~~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 115 KCDKVYE--REVST----EEGAALARRLGC-EFIE---------------ASAKTNVNVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred Chhcccc--CccCH----HHHHHHHHHhCC-EEEE---------------ecCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 9999866 66776 678889998886 8999 999999999999999999998777654
No 36
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.79 E-value=4.2e-19 Score=154.70 Aligned_cols=109 Identities=20% Similarity=0.305 Sum_probs=90.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||+++|++|+|||++++.||+++..|+.++.+. ..++|+|||||
T Consensus 48 iwDt~G~e~~~-------~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~-------------~~~~piilvgN 107 (200)
T smart00176 48 VWDTAGQEKFG-------GLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV-------------CENIPIVLCGN 107 (200)
T ss_pred EEECCCchhhh-------hhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh-------------CCCCCEEEEEE
Confidence 68887776443 23457999999999999999999999999999999885 13499999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||.. +.+.. + ..++++..++ .|+| |||++|.||+++|.++++.+.+.
T Consensus 108 K~Dl~~---~~v~~----~-~~~~~~~~~~-~~~e---------------~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 108 KVDVKD---RKVKA----K-SITFHRKKNL-QYYD---------------ISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred Cccccc---ccCCH----H-HHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHhc
Confidence 999964 34543 3 3478888886 8999 99999999999999999998764
No 37
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=7.8e-19 Score=149.55 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=91.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+.. ..+.||+++|++|+|||+++++||+++. .|+.++..+ ..++|++|||
T Consensus 52 i~Dt~G~~~~~~-------l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~-------------~~~~piilvg 111 (189)
T cd04134 52 LWDTAGQEEFDR-------LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH-------------CPGVKLVLVA 111 (189)
T ss_pred EEECCCChhccc-------cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 688777765432 3456999999999999999999999997 799999874 2248999999
Q ss_pred eCCCCCCCCC----------CccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKEG----------TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~~----------r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||..... +.++. +++.+++++.+...|+| ||||+|.||+++|+++++.
T Consensus 112 NK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 112 LKCDLREARNERDDLQRYGKHTISY----EEGLAVAKRINALRYLE---------------CSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred EChhhccChhhHHHHhhccCCCCCH----HHHHHHHHHcCCCEEEE---------------ccCCcCCCHHHHHHHHHHH
Confidence 9999976410 12444 67888998888558899 9999999999999999988
Q ss_pred HHH
Q 025248 151 LIR 153 (255)
Q Consensus 151 li~ 153 (255)
++.
T Consensus 173 ~~~ 175 (189)
T cd04134 173 ALN 175 (189)
T ss_pred Hhc
Confidence 864
No 38
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.78 E-value=7.7e-19 Score=145.27 Aligned_cols=113 Identities=12% Similarity=0.213 Sum_probs=92.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+.. ..+.||+++|++|||||+++++||+++. .|+.++..+ ..++|++|||
T Consensus 50 i~Dt~G~~~~~~-------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~-------------~~~~piilv~ 109 (174)
T smart00174 50 LWDTAGQEDYDR-------LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF-------------CPNTPIILVG 109 (174)
T ss_pred EEECCCCcccch-------hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------CCCCCEEEEe
Confidence 688887765442 3446899999999999999999999996 799999874 2348999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+|+.... .+.|+. +++.++++++++..|+| |||++|.||+++|+.+++.
T Consensus 110 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 110 TKLDLREDKSTLRELSKQKQEPVTY----EQGEALAKRIGAVKYLE---------------CSALTQEGVREVFEEAIRA 170 (174)
T ss_pred cChhhhhChhhhhhhhcccCCCccH----HHHHHHHHHcCCcEEEE---------------ecCCCCCCHHHHHHHHHHH
Confidence 999997531 123665 78899999999768999 9999999999999999987
Q ss_pred HHH
Q 025248 151 LIR 153 (255)
Q Consensus 151 li~ 153 (255)
+++
T Consensus 171 ~~~ 173 (174)
T smart00174 171 ALN 173 (174)
T ss_pred hcC
Confidence 753
No 39
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.78 E-value=7.5e-19 Score=144.28 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=92.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.||+++|++|||||++++.||+.+.+|+.++.... ...++|++||||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 114 (164)
T cd04175 53 ILDTAGTEQFT-------AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-----------DTEDVPMILVGN 114 (164)
T ss_pred EEECCCcccch-------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 68777766433 234569999999999999999999999999999998742 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+||... +.++. +++.++++++++ ++++ |||++|.|++++|.++++.+.
T Consensus 115 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 115 KCDLEDE--RVVGK----EQGQNLARQWGC-AFLE---------------TSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCcchhc--cEEcH----HHHHHHHHHhCC-EEEE---------------eeCCCCCCHHHHHHHHHHHhh
Confidence 9999876 56665 667889988885 8899 999999999999999988764
No 40
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.78 E-value=6.5e-19 Score=143.85 Aligned_cols=110 Identities=24% Similarity=0.449 Sum_probs=95.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.++. ....+|+++|++|+|||+++++||+++..|+.++.... ..++|++||||
T Consensus 52 i~D~~g~~~~~~-------~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~------------~~~~~iivvg~ 112 (162)
T PF00071_consen 52 IWDTSGQERFDS-------LRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK------------PEDIPIIVVGN 112 (162)
T ss_dssp EEEETTSGGGHH-------HHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS------------TTTSEEEEEEE
T ss_pred cccccccccccc-------cccccccccccccccccccccccccccccccccccccc------------cccccceeeec
Confidence 577776665442 23468999999999999999999999999999999863 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+|+... +.|+. +++.+++++++ .+|+| |||+++.||+++|..+++.+.
T Consensus 113 K~D~~~~--~~v~~----~~~~~~~~~~~-~~~~e---------------~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 113 KSDLSDE--REVSV----EEAQEFAKELG-VPYFE---------------VSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp TTTGGGG--SSSCH----HHHHHHHHHTT-SEEEE---------------EBTTTTTTHHHHHHHHHHHHH
T ss_pred ccccccc--ccchh----hHHHHHHHHhC-CEEEE---------------EECCCCCCHHHHHHHHHHHHh
Confidence 9999986 78887 89999999999 59999 999999999999999998875
No 41
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.78 E-value=1.1e-18 Score=154.92 Aligned_cols=115 Identities=14% Similarity=0.166 Sum_probs=94.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.++. ..+.||+++|++|||||+++++||+++. .|..++... ..++|+||||
T Consensus 53 iwDt~G~e~~~~-------l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-------------~~~~piiLVg 112 (222)
T cd04173 53 MWDTSGSSYYDN-------VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-------------CPNAKVVLVG 112 (222)
T ss_pred EEeCCCcHHHHH-------HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------CCCCCEEEEE
Confidence 799988887663 3456999999999999999999999995 888887663 2349999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC-HHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n-v~e~f~~l~~ 149 (255)
||+||.... ...|+. +++.+++++.|+..|+| |||+++.+ |+++|..+++
T Consensus 113 nK~DL~~~~~~~~~~~~~~~~pIs~----e~g~~~ak~~~~~~y~E---------------~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 113 CKLDMRTDLATLRELSKQRLIPVTH----EQGTVLAKQVGAVSYVE---------------CSSRSSERSVRDVFHVATV 173 (222)
T ss_pred ECcccccchhhhhhhhhccCCccCH----HHHHHHHHHcCCCEEEE---------------cCCCcCCcCHHHHHHHHHH
Confidence 999997531 023666 88999999999778999 99999985 9999999999
Q ss_pred HHHHHh
Q 025248 150 MLIRRR 155 (255)
Q Consensus 150 ~li~~~ 155 (255)
..+.+.
T Consensus 174 ~~~~~~ 179 (222)
T cd04173 174 ASLGRG 179 (222)
T ss_pred HHHhcc
Confidence 877654
No 42
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.6e-19 Score=149.54 Aligned_cols=114 Identities=23% Similarity=0.377 Sum_probs=100.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|.+- ..+|+|||+|.|+++|||+|.+.++..|..|+...++.. ..+..|+||||
T Consensus 64 iwdtagqerfr-------avtrsyyrgaagalmvyditrrstynhlsswl~dar~lt------------npnt~i~lign 124 (215)
T KOG0097|consen 64 IWDTAGQERFR-------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT------------NPNTVIFLIGN 124 (215)
T ss_pred EeecccHHHHH-------HHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC------------CCceEEEEecc
Confidence 48888877544 357899999999999999999999999999999887631 34578999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+||... |.|+. +++.+|+++.|+ .|+| +|||+|.||+++|.+..+.|.++..
T Consensus 125 kadle~q--rdv~y----eeak~faeengl-~fle---------------~saktg~nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 125 KADLESQ--RDVTY----EEAKEFAEENGL-MFLE---------------ASAKTGQNVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred hhhhhhc--ccCcH----HHHHHHHhhcCe-EEEE---------------ecccccCcHHHHHHHHHHHHHHhhh
Confidence 9999988 99999 999999999998 8999 9999999999999999999988763
No 43
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=2.3e-18 Score=150.12 Aligned_cols=114 Identities=18% Similarity=0.316 Sum_probs=96.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+.. ..+.||+++|++|+|||+++++||+++..|+.++.+.. ....+|++||||
T Consensus 56 i~Dt~G~~~~~~-------~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~-----------~~~~~~iilvgN 117 (211)
T cd04111 56 LWDTAGQERFRS-------ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHI-----------QPHRPVFILVGH 117 (211)
T ss_pred EEeCCcchhHHH-------HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCeEEEEEE
Confidence 677777664432 24579999999999999999999999999999998742 123478999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++.++++.+++ .|+| |||++|.||+++|+.+++.+.++.
T Consensus 118 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~e---------------~Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 118 KCDLESQ--RQVTR----EEAEKLAKDLGM-KYIE---------------TSARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred ccccccc--cccCH----HHHHHHHHHhCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876 67776 788999999995 8999 999999999999999999988774
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.77 E-value=1.5e-18 Score=141.26 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=90.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.||+++|++|||||+++++||+++..|+.++.+.. ...++|++||||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 114 (163)
T cd04136 53 ILDTAGTEQFT-------AMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVK-----------DTENVPMVLVGN 114 (163)
T ss_pred EEECCCccccc-------hHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 67777766443 134569999999999999999999999999999998742 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+||... +.+.. +++.++++.++. ++++ +||++|.|++++|+++.+.+
T Consensus 115 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 115 KCDLEDE--RVVSR----EEGQALARQWGC-PFYE---------------TSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred Ccccccc--ceecH----HHHHHHHHHcCC-eEEE---------------ecCCCCCCHHHHHHHHHHhc
Confidence 9999765 56665 678888888884 8899 99999999999999998765
No 45
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.77 E-value=2.2e-18 Score=149.93 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=95.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....||++||++|||||+++++||+++..|+.++.+... ....++|++||||
T Consensus 54 i~Dt~G~~~~~-------~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~---------~~~~~~piilVgN 117 (215)
T cd04109 54 VWDIGGQSIGG-------KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLK---------SSETQPLVVLVGN 117 (215)
T ss_pred EEECCCcHHHH-------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc---------ccCCCceEEEEEE
Confidence 57777655332 2355799999999999999999999999999999988531 1123578999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... +.++. +++.++++.+++ .+++ +||++|.||+++|+++++.+...
T Consensus 118 K~DL~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 118 KTDLEHN--RTVKD----DKHARFAQANGM-ESCL---------------VSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-EEEE---------------EECCCCCCHHHHHHHHHHHHHhc
Confidence 9999765 77776 888999999886 8899 99999999999999999988764
No 46
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.76 E-value=2e-18 Score=141.40 Aligned_cols=110 Identities=23% Similarity=0.289 Sum_probs=90.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+.. ....||+++|++|+|||+++++||+++..|+.++.+.. ...++|++||||
T Consensus 53 i~Dt~G~~~~~~-------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piviv~n 114 (163)
T cd04176 53 ILDTAGTEQFAS-------MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVK-----------GYEKVPIILVGN 114 (163)
T ss_pred EEECCCcccccc-------hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 688777664431 34568999999999999999999999999999998741 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. +++..+++..++ ++++ |||++|.|++++|.++++.+
T Consensus 115 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 115 KVDLESE--REVSS----AEGRALAEEWGC-PFME---------------TSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred Cccchhc--CccCH----HHHHHHHHHhCC-EEEE---------------ecCCCCCCHHHHHHHHHHhc
Confidence 9999765 55665 678888888886 8889 99999999999999988754
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.76 E-value=3.2e-18 Score=141.46 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=92.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....||+++|++|+|||+++++||+.+..|+.++.+.. ...+|++||||
T Consensus 54 l~Dt~g~~~~~-------~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piivv~n 114 (165)
T cd01865 54 IWDTAGQERYR-------TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS------------WDNAQVILVGN 114 (165)
T ss_pred EEECCChHHHH-------HHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCCEEEEEE
Confidence 67777766432 234678999999999999999999999999999987742 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||... +.+.. +++.++++.+++ +++| +||++|.|++++|++++..+.+
T Consensus 115 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 115 KCDMEDE--RVVSS----ERGRQLADQLGF-EFFE---------------ASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred CcccCcc--cccCH----HHHHHHHHHcCC-EEEE---------------EECCCCCCHHHHHHHHHHHHHh
Confidence 9999866 56665 778889998887 7899 9999999999999999987754
No 48
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.76 E-value=3.1e-18 Score=141.83 Aligned_cols=111 Identities=20% Similarity=0.348 Sum_probs=93.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+.. ....|+++||++|+|||+++++||+.+..|+.++.... ..++|++||||
T Consensus 56 l~D~~g~~~~~~-------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~p~iiv~n 116 (167)
T cd01867 56 IWDTAGQERFRT-------ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA------------SEDVERMLVGN 116 (167)
T ss_pred EEeCCchHHHHH-------HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 677777654331 23468999999999999999999999999999998742 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.+.. +++.++++.+++ +++| +||++|.||+++|+++.+.+..
T Consensus 117 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 117 KCDMEEK--RVVSK----EEGEALADEYGI-KFLE---------------TSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred Ccccccc--cCCCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999866 66666 778899999887 8899 9999999999999999998865
No 49
>PTZ00369 Ras-like protein; Provisional
Probab=99.75 E-value=5.9e-18 Score=143.91 Aligned_cols=113 Identities=18% Similarity=0.269 Sum_probs=93.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+.. ....||++++++|+|||+++++||+.+..|+.++.+.. ...++|++||||
T Consensus 57 i~Dt~G~~~~~~-------l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~-----------~~~~~piiiv~n 118 (189)
T PTZ00369 57 ILDTAGQEEYSA-------MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVK-----------DKDRVPMILVGN 118 (189)
T ss_pred EEeCCCCccchh-------hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 577777664432 23469999999999999999999999999999998742 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... +.++. +++.++++.+++ +++| |||++|.||+++|.++++.+.+.
T Consensus 119 K~Dl~~~--~~i~~----~~~~~~~~~~~~-~~~e---------------~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 119 KCDLDSE--RQVST----GEGQELAKSFGI-PFLE---------------TSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred Ccccccc--cccCH----HHHHHHHHHhCC-EEEE---------------eeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999765 66776 778889988886 7899 99999999999999999988764
No 50
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.75 E-value=4.1e-18 Score=138.43 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=93.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.||+++|++|+|||++++.||+.+..|+.++.+.... .....++|++||||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~-------~~~~~~~piilv~n 118 (168)
T cd04119 53 FFDLSGHPEYL-------EVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGP-------HGNMENIVVVVCAN 118 (168)
T ss_pred EEECCccHHHH-------HHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccc-------cccCCCceEEEEEE
Confidence 68877776443 23456899999999999999999999999999999885311 00124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.++. +++..++++.++ ++++ +||++|.|++++|+.+++.+++
T Consensus 119 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~l~~ 168 (168)
T cd04119 119 KIDLTKH--RAVSE----DEGRLWAESKGF-KYFE---------------TSACTGEGVNEMFQTLFSSIVD 168 (168)
T ss_pred chhcccc--cccCH----HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHHHhC
Confidence 9999754 55665 778889998885 8899 9999999999999999998763
No 51
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.75 E-value=5.3e-18 Score=148.36 Aligned_cols=138 Identities=27% Similarity=0.422 Sum_probs=95.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCC-------CCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLAS-------GGPGGLPV 74 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s-------~~~~~~~i 74 (255)
+||..|++.+. ...+.||+++||+|||||+++++||++|..|+.++.+......+... ...+..++
T Consensus 58 IwDtaG~e~~~-------~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T cd04102 58 LWDVGGSESVK-------STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI 130 (202)
T ss_pred EEecCCchhHH-------HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 57776666443 23457999999999999999999999999999999875322211110 01123569
Q ss_pred cEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 75 PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 75 PiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||||||+||.++ |.++.......+..+|++.|+ +.++ +.+.+|++=. .|.-..+.+..+|+.++++
T Consensus 131 PiilVGnK~Dl~~~--r~~~~~~~~~~~~~ia~~~~~-~~i~---~~c~~~~~~~------~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 131 PLLVIGTKLDQIPE--KESSGNLVLTARGFVAEQGNA-EEIN---LNCTNGRLLA------AGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred eEEEEEECccchhh--cccchHHHhhHhhhHHHhcCC-ceEE---EecCCccccc------CCCccHHHHHHHHHHHHHh
Confidence 99999999999876 666653333456778888987 5554 3333333311 1122357789999999999
Q ss_pred hccC
Q 025248 155 RYFS 158 (255)
Q Consensus 155 ~~~s 158 (255)
+|++
T Consensus 199 ~~~~ 202 (202)
T cd04102 199 RYFS 202 (202)
T ss_pred hhcC
Confidence 9974
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.75 E-value=3.8e-18 Score=149.78 Aligned_cols=109 Identities=20% Similarity=0.292 Sum_probs=88.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....||+++|++|+|||+++++||+++..|+.++.+. ..++|++||||
T Consensus 66 i~Dt~G~~~~~-------~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~-------------~~~~piilvgN 125 (219)
T PLN03071 66 CWDTAGQEKFG-------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-------------CENIPIVLCGN 125 (219)
T ss_pred EEECCCchhhh-------hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-------------CCCCcEEEEEE
Confidence 67777766432 33457999999999999999999999999999999874 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||.. +.+.. +++ +++++.++ .|+| ||||+|.||+++|+++++.+.+.
T Consensus 126 K~Dl~~---~~v~~----~~~-~~~~~~~~-~~~e---------------~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 126 KVDVKN---RQVKA----KQV-TFHRKKNL-QYYE---------------ISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred chhhhh---ccCCH----HHH-HHHHhcCC-EEEE---------------cCCCCCCCHHHHHHHHHHHHHcC
Confidence 999964 34443 444 77877776 8999 99999999999999999988654
No 53
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=5.8e-18 Score=139.26 Aligned_cols=98 Identities=24% Similarity=0.410 Sum_probs=85.4
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
.+.||+++|++|+|||+++++||+++..|+.++.... ...+|++|||||+|+... +.+.. ++
T Consensus 68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~------------~~~~~~iiv~nK~Dl~~~--~~~~~----~~ 129 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA------------SENVNKLLVGNKCDLTDK--RVVDY----SE 129 (166)
T ss_pred HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC------------CCCCcEEEEEEChhcccc--cCCCH----HH
Confidence 3568999999999999999999999999999998742 234899999999999766 56766 78
Q ss_pred HHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 102 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+.++++.+++ +++| +||++|.||+++|..+++.+.+
T Consensus 130 ~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 130 AQEFADELGI-PFLE---------------TSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred HHHHHHHcCC-eEEE---------------EECCCCcCHHHHHHHHHHHHHh
Confidence 8999998887 8999 9999999999999999988753
No 54
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.75 E-value=9.8e-18 Score=139.80 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=88.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.||+++||+|+|||+++++||+++..|+.++.+.. .++|++||||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~piiiv~n 112 (166)
T cd00877 53 VWDTAGQEKFG-------GLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-------------GNIPIVLCGN 112 (166)
T ss_pred EEECCCChhhc-------cccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-------------CCCcEEEEEE
Confidence 68888876443 234568999999999999999999999999999998852 2599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+.. +.+. .++.++++..++ .++| |||++|.||+++|+++.+.+.+.
T Consensus 113 K~Dl~~---~~~~-----~~~~~~~~~~~~-~~~e---------------~Sa~~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 113 KVDIKD---RKVK-----AKQITFHRKKNL-QYYE---------------ISAKSNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred chhccc---ccCC-----HHHHHHHHHcCC-EEEE---------------EeCCCCCChHHHHHHHHHHHHhc
Confidence 999973 3333 345567776664 8999 99999999999999999998763
No 55
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=1.1e-17 Score=141.37 Aligned_cols=113 Identities=22% Similarity=0.362 Sum_probs=94.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+.. ..+.+|+++|++|||||+++++||+++..|+.++.... ...+|+|||||
T Consensus 53 i~Dt~g~~~~~~-------~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~------------~~~~~~ivv~n 113 (188)
T cd04125 53 IWDTNGQERFRS-------LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA------------RENVIKVIVAN 113 (188)
T ss_pred EEECCCcHHHHh-------hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 577666554331 34568999999999999999999999999999998742 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.++. +++..+++..++ +++| +||++|.|++++|+++++.++++.
T Consensus 114 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~e---------------vSa~~~~~i~~~f~~l~~~~~~~~ 165 (188)
T cd04125 114 KSDLVNN--KVVDS----NIAKSFCDSLNI-PFFE---------------TSAKQSINVEEAFILLVKLIIKRL 165 (188)
T ss_pred CCCCccc--ccCCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999866 66776 788889998887 8999 999999999999999999998765
No 56
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.75 E-value=6.8e-18 Score=139.36 Aligned_cols=112 Identities=21% Similarity=0.375 Sum_probs=90.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....||+++|++|+|||+++++||+.+..|+.++....... ....+|++||||
T Consensus 58 i~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~piilv~n 122 (170)
T cd04116 58 IWDTAGQERFR-------SLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVK--------EPESFPFVVLGN 122 (170)
T ss_pred EEeCCChHHHH-------HhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccc--------cCCCCcEEEEEE
Confidence 57777765433 234569999999999999999999999999999998753211 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+|+. . +.++. +++.+++++++...++| +||++|.|++++|+.+++.
T Consensus 123 K~Dl~-~--~~~~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 123 KNDIP-E--RQVST----EEAQAWCRENGDYPYFE---------------TSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred Ccccc-c--cccCH----HHHHHHHHHCCCCeEEE---------------EECCCCCCHHHHHHHHHhh
Confidence 99997 3 56666 88999999998667889 9999999999999998875
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.75 E-value=8.6e-18 Score=141.06 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=92.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+.. ..+.||+++|++|+|||+++++||+.+..|+.++.+.. . ...+|++||||
T Consensus 53 i~Dt~G~~~~~~-------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~---------~--~~~~~iilVgn 114 (170)
T cd04108 53 LWDTAGQERFKC-------IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEN---------D--PSSVLLFLVGT 114 (170)
T ss_pred EEeCCChHHHHh-------hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---------C--CCCCeEEEEEE
Confidence 788888775542 34679999999999999999999999999999987642 1 22478999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||.......+.. +++.+++++++. +|+| +||++|.||+++|+.+.+++.+.
T Consensus 115 K~Dl~~~~~~~~~~----~~~~~~~~~~~~-~~~e---------------~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 115 KKDLSSPAQYALME----QDAIKLAAEMQA-EYWS---------------VSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred ChhcCccccccccH----HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHHHHHc
Confidence 99997552112233 678888888886 7899 99999999999999999888653
No 58
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.74 E-value=6.7e-18 Score=143.95 Aligned_cols=115 Identities=13% Similarity=0.255 Sum_probs=88.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....||++||++|+|||+++++||+++..|+.++.+.. ...+| |||||
T Consensus 53 iwDt~G~~~~~-------~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~------------~~~~p-ilVgn 112 (182)
T cd04128 53 IWDLGGQREFI-------NMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN------------KTAIP-ILVGT 112 (182)
T ss_pred EEeCCCchhHH-------HhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------------CCCCE-EEEEE
Confidence 68887776554 234569999999999999999999999999999998742 12366 67899
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||..... ......+.+++.++++.+++ .+++ ||||+|.||+++|+++++.+.+
T Consensus 113 K~Dl~~~~~-~~~~~~~~~~~~~~a~~~~~-~~~e---------------~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 113 KYDLFADLP-PEEQEEITKQARKYAKAMKA-PLIF---------------CSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred chhcccccc-chhhhhhHHHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHh
Confidence 999963210 00000122678889999885 8899 9999999999999999998865
No 59
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.74 E-value=8.6e-18 Score=141.28 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=95.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+.. ..+.|+++||++|+|||+++++||+++. .|+.++... ..++|+||||
T Consensus 53 i~Dt~G~~~~~~-------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~~piilv~ 112 (187)
T cd04132 53 LWDTAGQEEYDR-------LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-------------CPGTPIMLVG 112 (187)
T ss_pred EEECCCchhHHH-------HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 677777664432 2345899999999999999999999996 699888763 2358999999
Q ss_pred eCCCCCCCC--CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhcc
Q 025248 81 NKADVAAKE--GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 157 (255)
Q Consensus 81 NK~DL~~~~--~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~ 157 (255)
||+||.... .+.+.. +++.++++.+++..++| |||++|.||+++|+.+++.+++....
T Consensus 113 nK~Dl~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 113 LKTDLRKDKNLDRKVTP----AQAESVAKKQGAFAYLE---------------CSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred eChhhhhCccccCCcCH----HHHHHHHHHcCCcEEEE---------------ccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 999997541 134555 78999999998767889 99999999999999999999886544
No 60
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=6.9e-18 Score=138.96 Aligned_cols=110 Identities=25% Similarity=0.381 Sum_probs=91.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....+++++|++|+|||++++.||+.+..|+.++..+. ...+|++||||
T Consensus 56 i~D~~G~~~~~-------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~------------~~~~p~ivv~n 116 (165)
T cd01864 56 IWDTAGQERFR-------TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG------------ASNVVLLLIGN 116 (165)
T ss_pred EEECCChHHHH-------HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 67777766433 235678999999999999999999999999999998742 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. +++.+++++.++..++| +||++|.|++++|+++.+.+
T Consensus 117 K~Dl~~~--~~~~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 117 KCDLEEQ--REVLF----EEACTLAEKNGMLAVLE---------------TSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCCcEEEE---------------EECCCCCCHHHHHHHHHHhC
Confidence 9999866 56665 78889999988767889 99999999999999998753
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.74 E-value=9.4e-18 Score=138.66 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=89.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. ...+.|+++++++|+|||+++++||+++..|+..+.+.... ...++|++||||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilv~n 116 (165)
T cd04140 53 ITDTTGSHQFP-------AMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGN---------NIEKIPIMLVGN 116 (165)
T ss_pred EEECCCCCcch-------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC---------CCCCCCEEEEEE
Confidence 68877776443 23456899999999999999999999999999888764211 124599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... +.+.. +++..++...++ .|+| |||++|.||+++|++++.
T Consensus 117 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~e---------------~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 117 KCDESHK--REVSS----NEGAACATEWNC-AFME---------------TSAKTNHNVQELFQELLN 162 (165)
T ss_pred Ccccccc--CeecH----HHHHHHHHHhCC-cEEE---------------eecCCCCCHHHHHHHHHh
Confidence 9999765 56665 778888888886 8999 999999999999999875
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.74 E-value=9.2e-18 Score=136.74 Aligned_cols=110 Identities=18% Similarity=0.301 Sum_probs=90.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.+.. ...++|++||||
T Consensus 54 i~Dt~G~~~~~-------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piiiv~N 115 (164)
T cd04145 54 ILDTAGQEEFS-------AMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK-----------DRDEFPMILVGN 115 (164)
T ss_pred EEECCCCcchh-------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-----------CCCCCCEEEEee
Confidence 57777765443 234579999999999999999999999999999988731 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. +++.++++..++ ++++ +||++|.||+++|+++++.+
T Consensus 116 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 116 KADLEHQ--RKVSR----EEGQELARKLKI-PYIE---------------TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred Ccccccc--ceecH----HHHHHHHHHcCC-cEEE---------------eeCCCCCCHHHHHHHHHHhh
Confidence 9999866 55665 678889988886 8899 99999999999999998764
No 63
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.74 E-value=7.2e-18 Score=137.38 Aligned_cols=107 Identities=15% Similarity=0.280 Sum_probs=90.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||+++|++|+|||+++++||+.+..|+.++... ..++|++||||
T Consensus 55 i~D~~G~~~~~-------~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~-------------~~~~p~iiv~n 114 (162)
T cd04106 55 LWDTAGQEEFD-------AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE-------------CGDIPMVLVQT 114 (162)
T ss_pred EeeCCchHHHH-------HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-------------CCCCCEEEEEE
Confidence 68887776444 23567999999999999999999999999999998764 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+|+... +.++. +++.++++..++ ++++ +||++|.|++++|+.+..+
T Consensus 115 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 115 KIDLLDQ--AVITN----EEAEALAKRLQL-PLFR---------------TSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred Chhcccc--cCCCH----HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHh
Confidence 9999876 56776 788899999987 8899 9999999999988888653
No 64
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.73 E-value=1.8e-17 Score=138.13 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=89.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+.. ..+.|++++|++|+|||+++++||+++. .|+.++... ...+|++|||
T Consensus 52 i~Dt~G~~~~~~-------~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-------------~~~~piilv~ 111 (173)
T cd04130 52 LCDTAGQDEFDK-------LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-------------NPKAPIILVG 111 (173)
T ss_pred EEECCCChhhcc-------ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------CCCCCEEEEe
Confidence 688887764432 2456899999999999999999999985 799888763 1248999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
||+||.... .+.|+. +++.+++++.++..|+| |||++|.||+++|+.++.
T Consensus 112 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~a~~~~~~~~~e---------------~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 112 TQADLRTDVNVLIQLARYGEKPVSQ----SRAKALAEKIGACEYIE---------------CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred eChhhccChhHHHHHhhcCCCCcCH----HHHHHHHHHhCCCeEEE---------------EeCCCCCCHHHHHHHHHh
Confidence 999997531 256776 88999999999778999 999999999999988764
No 65
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.73 E-value=1.1e-17 Score=137.63 Aligned_cols=113 Identities=16% Similarity=0.200 Sum_probs=91.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++..+ ......|++++|++|+|||++++.||+.+..|+..+.... ....++|++||||
T Consensus 51 i~D~~g~~~~~------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----------~~~~~~piilv~n 114 (165)
T cd04146 51 ILDTAGQQQAD------TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIK----------KRDREIPVILVGN 114 (165)
T ss_pred EEECCCCcccc------cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh----------cCCCCCCEEEEEE
Confidence 67777765311 1235678999999999999999999999999999888742 1123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCC-CHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~-nv~e~f~~l~~~li 152 (255)
|+|+... +.++. +++.++++..+. +|+| |||++|. ||+++|+++++.+.
T Consensus 115 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 115 KADLLHY--RQVST----EEGEKLASELGC-LFFE---------------VSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCchHHh--CccCH----HHHHHHHHHcCC-EEEE---------------eCCCCCchhHHHHHHHHHHHHh
Confidence 9999766 66776 788899999986 8999 9999994 99999999998764
No 66
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.73 E-value=2.4e-17 Score=141.69 Aligned_cols=113 Identities=22% Similarity=0.327 Sum_probs=93.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|+++++++|+|||+++++||+.+..|+.++... ...+|++||||
T Consensus 59 l~D~~G~~~~~-------~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~-------------~~~~piivVgN 118 (199)
T cd04110 59 IWDTAGQERFR-------TITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN-------------CDDVCKVLVGN 118 (199)
T ss_pred EEeCCCchhHH-------HHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-------------CCCCCEEEEEE
Confidence 56666554332 12456999999999999999999999999999998774 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+|+... +.++. +++.++++.+++ .++| +||++|.||+++|+++.+.+++...
T Consensus 119 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 119 KNDDPER--KVVET----EDAYKFAGQMGI-SLFE---------------TSAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-EEEE---------------EECCCCcCHHHHHHHHHHHHHHhhh
Confidence 9999865 56665 778889988885 8899 9999999999999999999987543
No 67
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=2.6e-17 Score=140.17 Aligned_cols=113 Identities=18% Similarity=0.311 Sum_probs=94.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||+++++||+++..|+.++.+.. ...+|++||||
T Consensus 54 i~Dt~G~~~~~-------~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~------------~~~~piiiv~N 114 (191)
T cd04112 54 IWDTAGQERFR-------SVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA------------QEDVVIMLLGN 114 (191)
T ss_pred EEeCCCcHHHH-------HhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 57777655332 124568999999999999999999999999999998752 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.+.. +++..+++.+++ +|+| +||++|.|++++|.++.+.+.+..
T Consensus 115 K~Dl~~~--~~~~~----~~~~~l~~~~~~-~~~e---------------~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 115 KADMSGE--RVVKR----EDGERLAKEYGV-PFME---------------TSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred cccchhc--cccCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999765 66666 778889988886 8999 999999999999999999998764
No 68
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.73 E-value=3.8e-17 Score=142.66 Aligned_cols=111 Identities=19% Similarity=0.279 Sum_probs=95.1
Q ss_pred ccCCCCCCCccc-ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCC
Q 025248 12 ELNGGPPTGQVR-VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 90 (255)
Q Consensus 12 ~~~g~~~~gq~r-~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~ 90 (255)
|.+|...+..++ .|++++||+|+||+++++.||+.+..++.+|.+ .++...+|++|||||+||...
T Consensus 57 Dt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r-----------~~~~~~~PivlVGNK~Dl~~~-- 123 (196)
T KOG0395|consen 57 DTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILR-----------VKGRDDVPIILVGNKCDLERE-- 123 (196)
T ss_pred cCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH-----------hhCcCCCCEEEEEEcccchhc--
Confidence 444544454554 589999999999999999999999999999965 233456999999999999988
Q ss_pred CccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 91 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 91 r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|.|+. +++.+++...++ .|+| ||||...||+++|..+++++-..+
T Consensus 124 R~V~~----eeg~~la~~~~~-~f~E---------------~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 124 RQVSE----EEGKALARSWGC-AFIE---------------TSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred cccCH----HHHHHHHHhcCC-cEEE---------------eeccCCcCHHHHHHHHHHHHHhhh
Confidence 89998 999999999998 6999 999999999999999999887643
No 69
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.73 E-value=2.1e-17 Score=135.59 Aligned_cols=109 Identities=20% Similarity=0.396 Sum_probs=90.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+.. ..+.||++++++|+|||++++.||+++.+|+.++.+.. ...+|++||||
T Consensus 56 l~D~~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~pi~vv~n 116 (165)
T cd01868 56 IWDTAGQERYRA-------ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA------------DSNIVIMLVGN 116 (165)
T ss_pred EEeCCChHHHHH-------HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 677777654331 24568999999999999999999999999999998852 22489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. ++...+++..++ .++| +||++|.|++++|++++..+
T Consensus 117 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 117 KSDLRHL--RAVPT----EEAKAFAEKNGL-SFIE---------------TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred Ccccccc--ccCCH----HHHHHHHHHcCC-EEEE---------------EECCCCCCHHHHHHHHHHHh
Confidence 9999876 66665 778888888876 8899 99999999999999988765
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.72 E-value=2.3e-17 Score=142.91 Aligned_cols=122 Identities=16% Similarity=0.049 Sum_probs=91.9
Q ss_pred Cccccccccccc-CCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKEL-NGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~-~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|.+.++. .|..-..+...+++++|++|||||+++++||+.+..|+.++.+... ....++|++|||
T Consensus 53 i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~---------~~~~~~piiivg 123 (198)
T cd04142 53 ILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRP---------AGNKEPPIVVVG 123 (198)
T ss_pred EEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc---------cCCCCCCEEEEE
Confidence 688888654431 1221111233568999999999999999999999999999987421 013459999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHH-cCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEK-QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~-~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
||+|+... +.+.. +++.+++++ .++ +|+| |||++|.||+++|+.+++.+..+
T Consensus 124 NK~Dl~~~--~~~~~----~~~~~~~~~~~~~-~~~e---------------~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 124 NKRDQQRH--RFAPR----HVLSVLVRKSWKC-GYLE---------------CSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred ECcccccc--ccccH----HHHHHHHHHhcCC-cEEE---------------ecCCCCCCHHHHHHHHHHHhhcc
Confidence 99999765 66665 667777654 455 8899 99999999999999999887754
No 71
>PLN03108 Rab family protein; Provisional
Probab=99.72 E-value=3.2e-17 Score=142.51 Aligned_cols=114 Identities=25% Similarity=0.407 Sum_probs=96.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .+.+.||+++|++|+|||++++.||+.+..|+.++.... ...+|+++|||
T Consensus 59 l~Dt~G~~~~~-------~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~------------~~~~piiiv~n 119 (210)
T PLN03108 59 IWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA------------NANMTIMLIGN 119 (210)
T ss_pred EEeCCCcHHHH-------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 57777665333 245679999999999999999999999999999887642 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+||... +.++. +++.++++++++ .|+| +||+++.||+++|+++++.++++..
T Consensus 120 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 120 KCDLAHR--RAVST----EEGEQFAKEHGL-IFME---------------ASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CccCccc--cCCCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999876 67776 889999999987 8999 9999999999999999999987653
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.72 E-value=2.7e-17 Score=134.48 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=90.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++++||+.+..|...+.+.. ...++|++||||
T Consensus 52 i~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~pii~v~n 113 (164)
T smart00173 52 ILDTAGQEEFS-------AMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVK-----------DRDDVPIVLVGN 113 (164)
T ss_pred EEECCCcccch-------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 57776655332 234568999999999999999999999999999887632 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+|+... +.++. +++.++++..+. +|++ +||++|.|++++|+++++.+.
T Consensus 114 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 114 KCDLESE--RVVST----EEGKELARQWGC-PFLE---------------TSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred Ccccccc--ceEcH----HHHHHHHHHcCC-EEEE---------------eecCCCCCHHHHHHHHHHHHh
Confidence 9999876 56665 778888988885 8899 999999999999999998764
No 73
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.6e-18 Score=144.46 Aligned_cols=113 Identities=22% Similarity=0.303 Sum_probs=98.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||+.|+|.+- ..+.+|||.||++|||||++-..||+-|..|+.||.++. ..++-.|||||
T Consensus 60 iwdtagqerfr-------sitqsyyrsahalilvydiscqpsfdclpewlreie~ya------------n~kvlkilvgn 120 (213)
T KOG0095|consen 60 IWDTAGQERFR-------SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA------------NNKVLKILVGN 120 (213)
T ss_pred EeeccchHHHH-------HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh------------hcceEEEeecc
Confidence 48888877443 346689999999999999999999999999999999975 44588999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+.+. |.|.. ..+++|++.+.+ -|+| +|||+..||+..|..+...|+...
T Consensus 121 k~d~~dr--revp~----qigeefs~~qdm-yfle---------------tsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 121 KIDLADR--REVPQ----QIGEEFSEAQDM-YFLE---------------TSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred ccchhhh--hhhhH----HHHHHHHHhhhh-hhhh---------------hcccchhhHHHHHHHHHHHHHHHH
Confidence 9999988 88887 889999998775 6778 999999999999999998888643
No 74
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.72 E-value=1.8e-17 Score=145.30 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=99.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
.||+.|+|.||.-. + .-|.++|.||+||++.++.||+++. +|+.||..+ ...+|+||||
T Consensus 57 LwDTAGqedYDrlR-p------lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~-------------cp~vpiiLVG 116 (198)
T KOG0393|consen 57 LWDTAGQEDYDRLR-P------LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH-------------CPNVPIILVG 116 (198)
T ss_pred eeecCCCccccccc-c------cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh-------------CCCCCEEEEe
Confidence 69999999999622 1 3689999999999999999999987 999999997 2459999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
+|.||.++. ...|+. +++.++|++.|...|+| |||++..|+++.|+..++.
T Consensus 117 tk~DLr~d~~~~~~l~~~~~~~Vt~----~~g~~lA~~iga~~y~E---------------cSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 117 TKADLRDDPSTLEKLQRQGLEPVTY----EQGLELAKEIGAVKYLE---------------CSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred ehHHhhhCHHHHHHHHhccCCcccH----HHHHHHHHHhCcceeee---------------ehhhhhCCcHHHHHHHHHH
Confidence 999999542 125666 89999999999989999 9999999999999999998
Q ss_pred HHHHh
Q 025248 151 LIRRR 155 (255)
Q Consensus 151 li~~~ 155 (255)
.++..
T Consensus 178 ~l~~~ 182 (198)
T KOG0393|consen 178 ALRPP 182 (198)
T ss_pred Hhccc
Confidence 87754
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.72 E-value=3.5e-17 Score=136.08 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=90.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+.. .....|++++|++|+|||+++++||+.+..|+.++..+. ...++|++||||
T Consensus 55 i~Dt~G~~~~~~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~iiv~n 117 (170)
T cd04115 55 LWDTAGQERFRK------SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-----------LPNEVPRILVGN 117 (170)
T ss_pred EEeCCChHHHHH------hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 577766653321 124578999999999999999999999999999998742 124599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeec---CCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE---ARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~---g~nv~e~f~~l~~~l 151 (255)
|+|+... +.++. +++.++++..++ +|+| |||++ +.+++++|..+++.+
T Consensus 118 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 118 KCDLREQ--IQVPT----DLAQRFADAHSM-PLFE---------------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred Cccchhh--cCCCH----HHHHHHHHHcCC-cEEE---------------EeccCCcCCCCHHHHHHHHHHHh
Confidence 9999876 67776 788889988875 8999 99999 889999999888765
No 76
>PLN03110 Rab GTPase; Provisional
Probab=99.72 E-value=3.3e-17 Score=143.17 Aligned_cols=113 Identities=21% Similarity=0.338 Sum_probs=95.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||..|++.+. ...+.||++++++|||||++++.||+++..|+..+..+. ..++|++||||
T Consensus 65 l~Dt~G~~~~~-------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~------------~~~~piiiv~n 125 (216)
T PLN03110 65 IWDTAGQERYR-------AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA------------DSNIVIMMAGN 125 (216)
T ss_pred EEECCCcHHHH-------HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 57777665433 234569999999999999999999999999999988752 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++..+++.+++ +|+| +||++|.|++++|+.++..+.+..
T Consensus 126 K~Dl~~~--~~~~~----~~~~~l~~~~~~-~~~e---------------~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 126 KSDLNHL--RSVAE----EDGQALAEKEGL-SFLE---------------TSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred Chhcccc--cCCCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999766 67776 788899988886 8999 999999999999999999987753
No 77
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=3.9e-17 Score=134.87 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=88.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||+++|++|+|||++++.+|+++..|+.++.+. ..++|++||||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~p~ivv~n 112 (161)
T cd04124 53 FWDTAGQERFQ-------TMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-------------RPEIPCIVVAN 112 (161)
T ss_pred EEeCCCchhhh-------hhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-------------CCCCcEEEEEE
Confidence 68877776443 24567999999999999999999999999999999774 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... + .+++.+++++.++ ++++ +||++|.|++++|+.+++.+++.
T Consensus 113 K~Dl~~~----~-----~~~~~~~~~~~~~-~~~~---------------~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 113 KIDLDPS----V-----TQKKFNFAEKHNL-PLYY---------------VSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CccCchh----H-----HHHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHhc
Confidence 9998532 1 1456677777775 7888 99999999999999999988764
No 78
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.71 E-value=6.2e-17 Score=142.25 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=93.8
Q ss_pred CcccccccccccCCCCCCCccccccc-CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV-GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr-~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||++|++.. ....|++ ++|++|+|||++++.||+++..|+.++.+.. ...++|+||||
T Consensus 54 i~Dt~G~~~~---------~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-----------~~~~~piilV~ 113 (221)
T cd04148 54 VIDHWEQEMW---------TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-----------QLEDRPIILVG 113 (221)
T ss_pred EEeCCCcchH---------HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEE
Confidence 6888777611 1224566 9999999999999999999999999998742 12459999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhcc
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 157 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~ 157 (255)
||+||... +.++. +++.+++..+++ .|+| |||+++.||+++|+++++.+..++..
T Consensus 114 NK~Dl~~~--~~v~~----~~~~~~a~~~~~-~~~e---------------~SA~~~~gv~~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 114 NKSDLARS--REVSV----QEGRACAVVFDC-KFIE---------------TSAGLQHNVDELLEGIVRQIRLRRDS 168 (221)
T ss_pred EChhcccc--ceecH----HHHHHHHHHcCC-eEEE---------------ecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 99999876 67776 778889988886 8899 99999999999999999988765544
No 79
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.71 E-value=6.1e-17 Score=134.39 Aligned_cols=111 Identities=23% Similarity=0.386 Sum_probs=91.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|||||++++.||+.+..|+.++..+. ...+|++||||
T Consensus 57 i~Dt~G~~~~~-------~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~pvivv~n 117 (168)
T cd01866 57 IWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS------------NSNMTIMLIGN 117 (168)
T ss_pred EEECCCcHHHH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 46666654321 134569999999999999999999999999999998752 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.++. +++..++.+.++ .++| +||+++.|+++.|..+.+.+.+
T Consensus 118 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 118 KCDLESR--REVSY----EEGEAFAKEHGL-IFME---------------TSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred Ccccccc--cCCCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999865 56666 778889988886 8899 9999999999999999888754
No 80
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.71 E-value=7.1e-17 Score=133.51 Aligned_cols=111 Identities=11% Similarity=0.171 Sum_probs=89.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+.. ....||+++|++|+|||+++++||+++. .|+..+... ..++|++|||
T Consensus 52 i~Dt~G~~~~~~-------~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-------------~~~~piivv~ 111 (174)
T cd04135 52 LYDTAGQEDYDR-------LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-------------APNVPYLLVG 111 (174)
T ss_pred EEeCCCcccccc-------cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------CCCCCEEEEe
Confidence 577777664432 3346899999999999999999999996 799888763 2348999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.+.. .+.++. +++..++++.+...|+| |||++|.||++.|+.+++.
T Consensus 112 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 112 TQIDLRDDPKTLARLNDMKEKPVTV----EQGQKLAKEIGAHCYVE---------------CSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EchhhhcChhhHHHHhhccCCCCCH----HHHHHHHHHcCCCEEEE---------------ecCCcCCCHHHHHHHHHHH
Confidence 999996542 135665 78999999999767999 9999999999999999887
Q ss_pred H
Q 025248 151 L 151 (255)
Q Consensus 151 l 151 (255)
+
T Consensus 173 ~ 173 (174)
T cd04135 173 I 173 (174)
T ss_pred h
Confidence 5
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.71 E-value=5.8e-17 Score=130.90 Aligned_cols=109 Identities=22% Similarity=0.327 Sum_probs=87.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|+++++++|+|||++++.+|+++..|+.++.+.. ...++|++||||
T Consensus 53 i~Dt~G~~~~~-------~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piivv~n 114 (162)
T cd04138 53 ILDTAGQEEYS-------AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK-----------DSDDVPMVLVGN 114 (162)
T ss_pred EEECCCCcchH-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 46666655332 234569999999999999999999999999999998742 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... .+.. +++.++++..++ ++++ +||++|.|++++|+++++.+
T Consensus 115 K~Dl~~~---~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 115 KCDLAAR---TVSS----RQGQDLAKSYGI-PYIE---------------TSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred Ccccccc---eecH----HHHHHHHHHhCC-eEEE---------------ecCCCCCCHHHHHHHHHHHh
Confidence 9999753 3444 678888888886 8889 99999999999999988654
No 82
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.70 E-value=5.5e-17 Score=132.55 Aligned_cols=109 Identities=22% Similarity=0.370 Sum_probs=91.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++++|+++..|+.++.... ..++|++||||
T Consensus 53 l~D~~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~iivv~n 113 (161)
T cd04113 53 IWDTAGQERFR-------SVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA------------SPNIVVILVGN 113 (161)
T ss_pred EEECcchHHHH-------HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 68887776443 235678999999999999999999999999999987642 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. +++..+++..++ .+++ +||+++.|+++.|+++++.+
T Consensus 114 K~D~~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 114 KSDLADQ--REVTF----LEASRFAQENGL-LFLE---------------TSALTGENVEEAFLKCARSI 161 (161)
T ss_pred chhcchh--ccCCH----HHHHHHHHHcCC-EEEE---------------EECCCCCCHHHHHHHHHHhC
Confidence 9999875 66666 788999999985 8999 99999999999999998753
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=7.1e-17 Score=135.19 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=85.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....||+++|++|||||++++.+|+.+..|+.++.. ..++|+++|||
T Consensus 58 ~~d~~g~~~~~-------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~--------------~~~~p~iiv~N 116 (169)
T cd01892 58 LREVGEDEVAI-------LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM--------------LGEIPCLFVAA 116 (169)
T ss_pred EEecCCccccc-------ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc--------------CCCCeEEEEEE
Confidence 56666555332 2345689999999999999999999999999987643 12489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+||... +.+.. +++.++++.+++..+++ +||++|.|++++|+.+.+.++
T Consensus 117 K~Dl~~~--~~~~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 117 KADLDEQ--QQRYE----VQPDEFCRKLGLPPPLH---------------FSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ccccccc--ccccc----cCHHHHHHHcCCCCCEE---------------EEeccCccHHHHHHHHHHHhh
Confidence 9999755 44443 55778888888755688 999999999999999988775
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.70 E-value=1e-16 Score=132.78 Aligned_cols=113 Identities=18% Similarity=0.266 Sum_probs=91.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.||++++++|||||++++++|+.+..|..++.+.. ...++|+++|||
T Consensus 53 i~Dt~G~~~~~-------~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piiiv~n 114 (168)
T cd04177 53 ILDTAGTEQFT-------AMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK-----------DSDNVPMVLVGN 114 (168)
T ss_pred EEeCCCcccch-------hhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-----------CCCCCCEEEEEE
Confidence 46666655332 245679999999999999999999999999999988631 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.++. +++.+++++.+..++++ +||+++.|++++|++++++++-
T Consensus 115 K~D~~~~--~~~~~----~~~~~~~~~~~~~~~~~---------------~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 115 KADLEDD--RQVSR----EDGVSLSQQWGNVPFYE---------------TSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred Chhcccc--CccCH----HHHHHHHHHcCCceEEE---------------eeCCCCCCHHHHHHHHHHHHhh
Confidence 9999866 66665 77788888888558888 9999999999999999987753
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.70 E-value=2.1e-16 Score=141.94 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=88.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.||+++|++|||||+++++||+++..|+.++....... ........++|+|||||
T Consensus 52 I~Dt~G~~~~~-------~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~---~~~~~~~~~~piIivgN 121 (247)
T cd04143 52 ILDTSGNHPFP-------AMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCL---KNKTKENVKIPMVICGN 121 (247)
T ss_pred EEECCCChhhh-------HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccc---ccccccCCCCcEEEEEE
Confidence 67777765433 123458899999999999999999999999999997641100 00001234699999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+||... +.+.. +++.+++.......++| +||++|.||+++|++++..+
T Consensus 122 K~Dl~~~--~~v~~----~ei~~~~~~~~~~~~~e---------------vSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 122 KADRDFP--REVQR----DEVEQLVGGDENCAYFE---------------VSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred Cccchhc--cccCH----HHHHHHHHhcCCCEEEE---------------EeCCCCCCHHHHHHHHHHHh
Confidence 9999865 56666 67777766442237888 99999999999999998754
No 86
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.69 E-value=1.2e-16 Score=135.55 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=91.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||+.|++.+.. ....++++++++|+|||+++++||+.+. .|+.++..+ ..++|+||||
T Consensus 53 i~Dt~g~~~~~~-------~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~-------------~~~~piilvg 112 (187)
T cd04129 53 LWDTAGQEEYER-------LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY-------------CPNVPVILVG 112 (187)
T ss_pred EEECCCChhccc-------cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEe
Confidence 577776654431 1124789999999999999999999997 799999874 2249999999
Q ss_pred eCCCCCCCC--------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 81 NKADVAAKE--------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 81 NK~DL~~~~--------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
||+|+.... .+.++. +++.++++..+...|+| |||++|.||+++|+.+.+.++
T Consensus 113 nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 113 LKKDLRQDAVAKEEYRTQRFVPI----QQGKRVAKEIGAKKYME---------------CSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred eChhhhhCcccccccccCCcCCH----HHHHHHHHHhCCcEEEE---------------ccCCCCCCHHHHHHHHHHHHh
Confidence 999996421 144555 77889999999768999 999999999999999998886
Q ss_pred HHh
Q 025248 153 RRR 155 (255)
Q Consensus 153 ~~~ 155 (255)
..+
T Consensus 174 ~~~ 176 (187)
T cd04129 174 LVR 176 (187)
T ss_pred ccc
Confidence 643
No 87
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.69 E-value=1e-16 Score=131.07 Aligned_cols=108 Identities=20% Similarity=0.255 Sum_probs=88.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.+++++|++|+|||+++++||+.+..|+.++... ..++|++||||
T Consensus 56 i~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-------------~~~~p~ilv~n 115 (164)
T cd04101 56 IFDSAGQELYS-------DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTA-------------SKHMPGVLVGN 115 (164)
T ss_pred EEECCCHHHHH-------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-------------CCCCCEEEEEE
Confidence 67777655433 23567899999999999999999999999999998874 13489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. .++..++...++ .+++ |||+++.|+++.|+.+++++
T Consensus 116 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 116 KMDLADK--AEVTD----AQAQAFAQANQL-KFFK---------------TSALRGVGYEEPFESLARAF 163 (164)
T ss_pred Ccccccc--cCCCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCChHHHHHHHHHHh
Confidence 9999766 55665 566778877775 7889 99999999999999998865
No 88
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.69 E-value=2.1e-16 Score=133.73 Aligned_cols=114 Identities=16% Similarity=0.235 Sum_probs=91.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.||+++|++|||||++++.||+++..|+.++... ..++|++||||
T Consensus 54 i~D~~G~~~~~-------~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-------------~~~~piilv~n 113 (193)
T cd04118 54 IWDTAGSERYE-------AMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-------------EEHCKIYLCGT 113 (193)
T ss_pred EEECCCchhhh-------hhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-------------CCCCCEEEEEE
Confidence 67777765433 12346899999999999999999999999999998874 22489999999
Q ss_pred CCCCCCCC--CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKE--GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~--~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+.... .+.+.. +++.++++..+. .+++ +||+++.|++++|+.+++.++++.
T Consensus 114 K~Dl~~~~~~~~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 114 KSDLIEQDRSLRQVDF----HDVQDFADEIKA-QHFE---------------TSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred cccccccccccCccCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99986432 134544 667888888876 7888 999999999999999999998765
No 89
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=7.2e-17 Score=137.33 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=82.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||+++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 65 i~D~~Gq~~~~-------~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~-----------~~~~~piilv~N 126 (181)
T PLN00223 65 VWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED-----------ELRDAVLLVFAN 126 (181)
T ss_pred EEECCCCHHHH-------HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCH-----------hhCCCCEEEEEE
Confidence 47777665332 134679999999999999999999999998888876521 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee-cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E-e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... + .+.++.+.+++..... .+.+.+ |||++|+||+++|++|++.+.++
T Consensus 127 K~Dl~~~----~-------~~~~~~~~l~l~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 127 KQDLPNA----M-------NAAEITDKLGLHSLRQRHWYIQS---------TCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCCC----C-------CHHHHHHHhCccccCCCceEEEe---------ccCCCCCCHHHHHHHHHHHHhhc
Confidence 9999754 1 1345556666532100 112223 99999999999999999988765
No 90
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=2.3e-16 Score=128.22 Aligned_cols=111 Identities=24% Similarity=0.428 Sum_probs=91.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++..+|+.+..|+.++..+. ...+|++||+|
T Consensus 53 l~D~~G~~~~~-------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~------------~~~~pivvv~n 113 (164)
T smart00175 53 IWDTAGQERFR-------SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYA------------DPNVVIMLVGN 113 (164)
T ss_pred EEECCChHHHH-------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 56666655333 134568999999999999999999999999999998852 23599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.+.. +.+.+++++.++ .++| +||+++.|++++|+.+.+.+.+
T Consensus 114 K~D~~~~--~~~~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 114 KSDLEDQ--RQVSR----EEAEAFAEEHGL-PFFE---------------TSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred chhcccc--cCCCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHhh
Confidence 9998765 55555 778889998886 7899 9999999999999999988765
No 91
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.67 E-value=4.9e-16 Score=128.58 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=87.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+.. ....+|+++|++++|||+++++||+++. .|+.++... ..++|++|||
T Consensus 53 i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~-------------~~~~piilv~ 112 (175)
T cd01870 53 LWDTAGQEDYDR-------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------CPNVPIILVG 112 (175)
T ss_pred EEeCCCchhhhh-------ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------CCCCCEEEEe
Confidence 677777654432 2235889999999999999999999996 799988763 2348999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+|+.... .+.+.. ++++++++.++...+++ |||++|.||+++|+++.++
T Consensus 113 nK~Dl~~~~~~~~~i~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 113 NKKDLRNDEHTRRELAKMKQEPVKP----EEGRDMANKIGAFGYME---------------CSAKTKEGVREVFEMATRA 173 (175)
T ss_pred eChhcccChhhhhhhhhccCCCccH----HHHHHHHHHcCCcEEEE---------------eccccCcCHHHHHHHHHHH
Confidence 999986531 123444 77889999888767899 9999999999999999876
Q ss_pred H
Q 025248 151 L 151 (255)
Q Consensus 151 l 151 (255)
+
T Consensus 174 ~ 174 (175)
T cd01870 174 A 174 (175)
T ss_pred h
Confidence 4
No 92
>PLN03118 Rab family protein; Provisional
Probab=99.66 E-value=5.2e-16 Score=134.28 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=91.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHH-HHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQK-WAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~-Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. .....||+++|++|||||+++++||+++.. |..++..+. ...++|++|||
T Consensus 66 l~Dt~G~~~~~-------~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~-----------~~~~~~~ilv~ 127 (211)
T PLN03118 66 IWDTAGQERFR-------TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYS-----------TNQDCVKMLVG 127 (211)
T ss_pred EEECCCchhhH-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEE
Confidence 67777765443 134579999999999999999999999984 777766531 13348999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
||+|+... +.++. +++.+++...++ .|+| |||+++.|+++.|+.+++.+.+..
T Consensus 128 NK~Dl~~~--~~i~~----~~~~~~~~~~~~-~~~e---------------~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 128 NKVDRESE--RDVSR----EEGMALAKEHGC-LFLE---------------CSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred ECcccccc--CccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999866 56665 778888888886 7889 999999999999999999997753
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=5.9e-16 Score=125.00 Aligned_cols=109 Identities=20% Similarity=0.356 Sum_probs=89.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++.++|+.+..|+.++.... ..++|++||||
T Consensus 53 ~~D~~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piiiv~n 113 (162)
T cd04123 53 IWDTAGQERYH-------ALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMR------------GNNISLVIVGN 113 (162)
T ss_pred EEECCchHHHH-------HhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 57777765332 245568999999999999999999999999999998742 12589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. ++..++++..++ .+++ +||+++.|++++|+++.+.+
T Consensus 114 K~D~~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 114 KIDLERQ--RVVSK----SEAEEYAKSVGA-KHFE---------------TSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred Ccccccc--cCCCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHh
Confidence 9999865 56665 667778888876 7888 99999999999999998876
No 94
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.65 E-value=4.1e-16 Score=129.99 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=84.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||+++|++|||||++++++|+++..|+.++.+.. ...++|++||||
T Consensus 47 l~Dt~G~~~~~-------~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 108 (169)
T cd04158 47 IWDVGGKHKLR-------PLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEK-----------ELRDALLLIFAN 108 (169)
T ss_pred EEECCCChhcc-------hHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCh-----------hhCCCCEEEEEe
Confidence 57777665332 245679999999999999999999999999999987631 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-----CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-----LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... ++. +++.++++..++ ..+++ ||||+|.||+++|+++++.+.+.
T Consensus 109 K~Dl~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 109 KQDVAGA----LSV----EEMTELLSLHKLCCGRSWYIQG---------------CDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred CcCcccC----CCH----HHHHHHhCCccccCCCcEEEEe---------------CcCCCCCCHHHHHHHHHHHHhhc
Confidence 9999632 444 556666543221 13456 99999999999999999887664
No 95
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=3.8e-16 Score=131.46 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=78.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.||++||++|+|||++++++|+++..|+.++.+.. ...++|++||||
T Consensus 61 l~D~~G~~~~~-------~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~-----------~~~~~piilv~N 122 (175)
T smart00177 61 VWDVGGQDKIR-------PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNED-----------ELRDAVILVFAN 122 (175)
T ss_pred EEECCCChhhH-------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCH-----------hhcCCcEEEEEe
Confidence 57777765332 235678999999999999999999999999998887521 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCee-ecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~-Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+||.+. . + ..++.+.+++.... ..+.+++ +||++|.||+++|++|...+
T Consensus 123 K~Dl~~~--~--~-------~~~i~~~~~~~~~~~~~~~~~~---------~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 123 KQDLPDA--M--K-------AAEITEKLGLHSIRDRNWYIQP---------TCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CcCcccC--C--C-------HHHHHHHhCccccCCCcEEEEE---------eeCCCCCCHHHHHHHHHHHh
Confidence 9999754 1 1 22344444432100 0111223 99999999999999987764
No 96
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.64 E-value=2.1e-16 Score=137.13 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=101.0
Q ss_pred CCcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 1 ~~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|.||+.|+|++|- .+..|||||.+.+|||+.||+.||+.+..|.+++.+. ...||.++|-
T Consensus 72 mlWdtagqeEfDa-------ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-------------~~~IPtV~vq 131 (246)
T KOG4252|consen 72 MLWDTAGQEEFDA-------ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-------------TERIPTVFVQ 131 (246)
T ss_pred HHHHhccchhHHH-------HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH-------------hccCCeEEee
Confidence 7899999999993 4678999999999999999999999999999999884 3459999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
||+||.++ .++.. ++++.+++++++ .++. +|+|+..||.+.|.-|+..+.+..
T Consensus 132 NKIDlved--s~~~~----~evE~lak~l~~-RlyR---------------tSvked~NV~~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 132 NKIDLVED--SQMDK----GEVEGLAKKLHK-RLYR---------------TSVKEDFNVMHVFAYLAEKLTQQK 184 (246)
T ss_pred ccchhhHh--hhcch----HHHHHHHHHhhh-hhhh---------------hhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999988 67777 888899999886 7777 999999999999999998887754
No 97
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.64 E-value=1.1e-15 Score=124.54 Aligned_cols=109 Identities=21% Similarity=0.374 Sum_probs=89.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|||||+++.++|+.+..|+..+.... ...+|++||+|
T Consensus 54 i~D~~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~iivv~n 114 (163)
T cd01860 54 IWDTAGQERYR-------SLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA------------SPNIIIALVGN 114 (163)
T ss_pred EEeCCchHHHH-------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 57777665433 234568999999999999999999999999999998752 24599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. +++.++++++++ .++| +||++|.|+++.|+++++.|
T Consensus 115 K~D~~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 115 KADLESK--RQVST----EEAQEYADENGL-LFFE---------------TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred Ccccccc--CcCCH----HHHHHHHHHcCC-EEEE---------------EECCCCCCHHHHHHHHHHHh
Confidence 9999865 55665 678888998885 7889 99999999999999998765
No 98
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.64 E-value=1.5e-15 Score=124.62 Aligned_cols=117 Identities=26% Similarity=0.414 Sum_probs=92.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+++..|..++....... ...++|++||||
T Consensus 53 ~~D~~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~n 117 (172)
T cd01862 53 IWDTAGQERFQ-------SLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPS--------DPENFPFVVLGN 117 (172)
T ss_pred EEeCCChHHHH-------hHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCcc--------CCCCceEEEEEE
Confidence 57777765433 134568999999999999999999999999999887642111 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... +.+.. ++...+++..+...+++ +||++|.|++++|+.+.+.+++.
T Consensus 118 K~Dl~~~--~~~~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 118 KIDLEEK--RQVST----KKAQQWCQSNGNIPYFE---------------TSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCCceEEE---------------EECCCCCCHHHHHHHHHHHHHhc
Confidence 9999854 44554 67788888888668888 99999999999999999988876
No 99
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.63 E-value=1.1e-15 Score=124.37 Aligned_cols=108 Identities=21% Similarity=0.312 Sum_probs=88.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++++||+.+..|+.++.... ..++|++||||
T Consensus 53 ~~D~~G~~~~~-------~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~iilv~n 113 (161)
T cd01861 53 LWDTAGQERFR-------SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDER------------GNDVIIVLVGN 113 (161)
T ss_pred EEECCCcHHHH-------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------------CCCCEEEEEEE
Confidence 67777765432 135678999999999999999999999999999987631 22589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+|+... +.+.. ++...+++..++ .+++ +||+++.|+++.|+++++.
T Consensus 114 K~D~~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 114 KTDLSDK--RQVST----EEGEKKAKELNA-MFIE---------------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred Chhcccc--CccCH----HHHHHHHHHhCC-EEEE---------------EeCCCCCCHHHHHHHHHHh
Confidence 9999654 45555 778888888885 7889 9999999999999998764
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.63 E-value=4.3e-16 Score=130.54 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=78.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+.. ..+.||++||++|||||++++.+|+++..|+.++.... ....+|++||||
T Consensus 57 l~Dt~G~~~~~~-------~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 118 (168)
T cd04149 57 VWDVGGQDKIRP-------LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDR-----------EMRDALLLVFAN 118 (168)
T ss_pred EEECCCCHHHHH-------HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCH-----------hhcCCcEEEEEE
Confidence 688777764431 24568999999999999999999999999988887521 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... ++. +++.++++...+ ..++| ||||+|.||+++|++|.+
T Consensus 119 K~Dl~~~----~~~----~~i~~~~~~~~~~~~~~~~~~---------------~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 119 KQDLPDA----MKP----HEIQEKLGLTRIRDRNWYVQP---------------SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CcCCccC----CCH----HHHHHHcCCCccCCCcEEEEE---------------eeCCCCCChHHHHHHHhc
Confidence 9999643 333 455554421111 14566 999999999999998864
No 101
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.63 E-value=1.7e-15 Score=123.50 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=86.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.+++++|++|+|||++++.||+.+..|+.++.++. ....+|++||||
T Consensus 53 l~D~~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~~~~iv~n 114 (161)
T cd01863 53 IWDTAGQERFR-------TLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYS-----------TNNDIVKMLVGN 114 (161)
T ss_pred EEECCCchhhh-------hhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-----------CCCCCcEEEEEE
Confidence 56666654322 223568999999999999999999999999999998852 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+|+.. +.+.. ++..++++..++ .+++ +||++|.|+++.|+++++.
T Consensus 115 K~D~~~---~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 115 KIDKEN---REVTR----EEGLKFARKHNM-LFIE---------------TSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CCcccc---cccCH----HHHHHHHHHcCC-EEEE---------------EecCCCCCHHHHHHHHHHh
Confidence 999973 33444 678889988886 7889 9999999999999888765
No 102
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=1.6e-15 Score=124.50 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=86.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++.+|++|+|||++++.+|+.+..|+.++.... ...+|++||||
T Consensus 60 ~~D~~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~------------~~~~~~i~v~N 120 (169)
T cd04114 60 IWDTAGQERFR-------SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA------------NNKVITILVGN 120 (169)
T ss_pred EEECCCcHHHH-------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 56666554332 123568999999999999999999999999999887642 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. +....+.+.... .+++ |||++|.|++++|+.+.+.+
T Consensus 121 K~D~~~~--~~i~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 121 KIDLAER--REVSQ----QRAEEFSDAQDM-YYLE---------------TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-eEEE---------------eeCCCCCCHHHHHHHHHHHh
Confidence 9999765 55654 556677776663 7888 99999999999999998865
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.63 E-value=7.7e-16 Score=127.53 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=75.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||++||++|||||++++.+|+++..|+.++.... ....+|++||||
T Consensus 48 l~D~~G~~~~~-------~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 109 (159)
T cd04150 48 VWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNED-----------ELRDAVLLVFAN 109 (159)
T ss_pred EEECCCCHhHH-------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcH-----------HhcCCCEEEEEE
Confidence 68888776433 134578999999999999999999999999888876521 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCee-ecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS-EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~-Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+||.+. +.. + +..++.++.... ..+.+++ ||||+|.||+++|++|..
T Consensus 110 K~Dl~~~----~~~----~---~i~~~~~~~~~~~~~~~~~~---------~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 110 KQDLPNA----MSA----A---EVTDKLGLHSLRNRNWYIQA---------TCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCC----CCH----H---HHHHHhCccccCCCCEEEEE---------eeCCCCCCHHHHHHHHhc
Confidence 9999643 111 1 222222221000 0112223 999999999999998864
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=1.1e-15 Score=130.07 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=82.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .+...||+++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 65 l~D~~G~~~~~-------~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~-----------~~~~~piilv~N 126 (182)
T PTZ00133 65 MWDVGGQDKLR-------PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSED-----------ELRDAVLLVFAN 126 (182)
T ss_pred EEECCCCHhHH-------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCH-----------hhcCCCEEEEEe
Confidence 57777765433 145679999999999999999999999998888876521 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee--cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE--ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E--e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +. ..++++..++ .++. .+++.+ +||++|.|++++|+++.+.+.++.
T Consensus 127 K~Dl~~~----~~-------~~~i~~~l~~-~~~~~~~~~~~~---------~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 127 KQDLPNA----MS-------TTEVTEKLGL-HSVRQRNWYIQG---------CCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred CCCCCCC----CC-------HHHHHHHhCC-CcccCCcEEEEe---------eeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9998643 12 1233444444 1110 122333 999999999999999999887753
No 105
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.62 E-value=3.3e-15 Score=121.10 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=82.2
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
..++++++++|+|||++++.+|+++..|+..+.... ...++|++||+||+|+... +.+.. ++.
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piiiv~NK~D~~~~--~~~~~----~~~ 128 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVK-----------DDDNVPLLLVGNKCDLEDK--RQVSS----EEA 128 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEEccccccc--cccCH----HHH
Confidence 458999999999999999999999999999988742 1345999999999999764 34444 667
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
.++++.+++ ++++ +||++|.|+++.|+++++.+.+
T Consensus 129 ~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 129 ANLARQWGV-PYVE---------------TSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred HHHHHHhCC-eEEE---------------eeCCCCCCHHHHHHHHHHHHHh
Confidence 788888886 8899 9999999999999999887753
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.61 E-value=4.1e-16 Score=129.95 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=79.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.||+++|++|+|||++++.+|+.++.|+.++... ..++|++||||
T Consensus 48 i~Dt~G~~~~~-------~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~-------------~~~~piilv~N 107 (164)
T cd04162 48 LLEIGGSQNLR-------KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-------------PPDLPLVVLAN 107 (164)
T ss_pred EEECCCCcchh-------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC-------------CCCCcEEEEEe
Confidence 67776665432 23457999999999999999999999999999998763 13499999999
Q ss_pred CCCCCCCCCCccCCccHH--HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLV--DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~--e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
|+|+... +.++. +. ..+.+++++.++ .++|-.-..| |||++++||+++|+.++
T Consensus 108 K~Dl~~~--~~~~~--i~~~~~~~~~~~~~~~-~~~~~Sa~~~---------~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 108 KQDLPAA--RSVQE--IHKELELEPIARGRRW-ILQGTSLDDD---------GSPSRMEAVKDLLSQLI 162 (164)
T ss_pred CcCCcCC--CCHHH--HHHHhCChhhcCCCce-EEEEeeecCC---------CChhHHHHHHHHHHHHh
Confidence 9999765 43321 11 124566666665 6777223333 44445988888887765
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=3.7e-15 Score=123.44 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=83.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+. ...+.+++++|++|||||++++.||+.+. .|+..+... ...+|++|||
T Consensus 51 i~Dt~G~~~~~-------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~-------------~~~~pviiv~ 110 (166)
T cd01893 51 IVDTSSRPQDR-------ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRL-------------GVKVPIILVG 110 (166)
T ss_pred EEeCCCchhhh-------HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 68877765332 23456789999999999999999999986 798888764 1258999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
||+|+.+. +... .+.++...++++++ +..++| |||+++.|++++|+.+.+.+++
T Consensus 111 nK~Dl~~~--~~~~--~~~~~~~~~~~~~~~~~~~~e---------------~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 111 NKSDLRDG--SSQA--GLEEEMLPIMNEFREIETCVE---------------CSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred Echhcccc--cchh--HHHHHHHHHHHHHhcccEEEE---------------eccccccCHHHHHHHHHHHhcC
Confidence 99999765 2221 11133444444443 236788 9999999999999999887754
No 108
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=9.2e-15 Score=119.80 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=87.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. .....+++.+|++|+|||++++.||..+. .|+..+..+ ..++|++|||
T Consensus 52 ~~D~~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~~p~ivv~ 111 (171)
T cd00157 52 LWDTAGQEEYD-------RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY-------------CPNVPIILVG 111 (171)
T ss_pred EEeCCCccccc-------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------CCCCCEEEEE
Confidence 68888877543 23445789999999999999999999876 798888774 2259999999
Q ss_pred eCCCCCCCCCC---------ccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 81 NKADVAAKEGT---------RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~~~r---------~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
||+|+...... .+.. +++.+++...++..|+| +||++|.|++++|+.+++
T Consensus 112 nK~Dl~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 112 TKIDLRDDENTLKKLEKGKEPITP----EEGEKLAKEIGAIGYME---------------CSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ccHHhhhchhhhhhcccCCCccCH----HHHHHHHHHhCCeEEEE---------------eecCCCCCHHHHHHHHhh
Confidence 99999765311 2333 67888999998778999 999999999999988875
No 109
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.58 E-value=5.2e-15 Score=120.24 Aligned_cols=106 Identities=17% Similarity=0.093 Sum_probs=75.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....||+++|++|+|||++++.+|+.+..|+.++.+.... ...++|++||+|
T Consensus 49 l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~p~iiv~N 112 (162)
T cd04157 49 AFDMSGQGKYR-------GLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDI---------KHRRVPILFFAN 112 (162)
T ss_pred EEECCCCHhhH-------HHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCccc---------ccCCCCEEEEEe
Confidence 57776655322 24567899999999999999999999999999988763111 123599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+.... . . + ++.+..++ ..+++ |||++|.|++++|++|.+
T Consensus 113 K~Dl~~~~--~--~----~---~~~~~l~~~~~~~~~~~~~~---------------~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 113 KMDLPDAL--T--A----V---KITQLLGLENIKDKPWHIFA---------------SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CccccCCC--C--H----H---HHHHHhCCccccCceEEEEE---------------eeCCCCCchHHHHHHHhc
Confidence 99997541 1 1 1 12222221 13566 999999999999998864
No 110
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.57 E-value=1.5e-14 Score=124.10 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=84.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|+..+.. ..+.|++++|++|||||+++..+|+.+..|+.++.... ....+|+|||+|
T Consensus 51 i~D~~G~~~~~~-------~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~N 112 (198)
T cd04147 51 ILDTSGSYSFPA-------MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVK-----------EDKFVPIVVVGN 112 (198)
T ss_pred EEECCCchhhhH-------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEEE
Confidence 566666543321 23468999999999999999999999999999998742 123599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHH-HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVE-KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~-~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+.... +.+.. +.+.+... ..+. .+++ +||++|.||+++|+++++.+..
T Consensus 113 K~Dl~~~~-~~v~~----~~~~~~~~~~~~~-~~~~---------------~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 113 KADSLEEE-RQVPA----KDALSTVELDWNC-GFVE---------------TSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred cccccccc-ccccH----HHHHHHHHhhcCC-cEEE---------------ecCCCCCCHHHHHHHHHHHhhc
Confidence 99997532 44443 34444433 3343 6788 9999999999999999987753
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.55 E-value=1.8e-14 Score=122.16 Aligned_cols=120 Identities=20% Similarity=0.257 Sum_probs=83.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.||+++|++|+|||+++.++|+.+..|+.++.... ....+|++||+|
T Consensus 56 l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~-----------~~~~~p~iiv~N 117 (183)
T cd04152 56 FWDVGGQEKLR-------PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFS-----------ENQGVPVLVLAN 117 (183)
T ss_pred EEECCCcHhHH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhh-----------hcCCCcEEEEEE
Confidence 56666654322 235678999999999999999999999999999887631 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhcc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 157 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~ 157 (255)
|+|+... +.. ++..++..-...... ..+++++ |||++|.|++++|+++++.+++.+..
T Consensus 118 K~D~~~~----~~~----~~~~~~~~~~~~~~~-~~~~~~~---------~SA~~~~gi~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 118 KQDLPNA----LSV----SEVEKLLALHELSAS-TPWHVQP---------ACAIIGEGLQEGLEKLYEMILKRRKM 175 (183)
T ss_pred CcCcccc----CCH----HHHHHHhCccccCCC-CceEEEE---------eecccCCCHHHHHHHHHHHHHHHHhh
Confidence 9998643 222 334444331111000 0122233 99999999999999999999876643
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.54 E-value=7.7e-15 Score=122.45 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=77.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++... ...+.||+++|++|+|||++++.+|+.+..|+.++.... ....+|++||||
T Consensus 47 i~D~~G~~~~~-------~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-----------~~~~~piliv~N 108 (167)
T cd04161 47 IFDLGGGANFR-------GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-----------RVSGKPILVLAN 108 (167)
T ss_pred EEECCCcHHHH-------HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-----------cccCCcEEEEEe
Confidence 57777654322 235679999999999999999999999999999988631 123589999999
Q ss_pred CCCCCCCCCCccCCccHHH--HHHHHHHHcCC-CCeeecCCCCCCCCCCCCcceeeecC------CCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVD--AARQWVEKQGL-LPSSEELPLTESFPGGGGLIAAAKEA------RYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e--~a~~~a~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g------~nv~e~f~~l~~ 149 (255)
|+|+... +... ++.+ ...+++++.+. ..+++ |||++| .|++++|+||..
T Consensus 109 K~Dl~~~--~~~~--~i~~~~~l~~~~~~~~~~~~~~~---------------~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 109 KQDKKNA--LLGA--DVIEYLSLEKLVNENKSLCHIEP---------------CSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCcCC--CCHH--HHHHhcCcccccCCCCceEEEEE---------------eEceeCCCCccccCHHHHHHHHhc
Confidence 9999765 3211 0111 11223322222 13444 999998 899999999964
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.54 E-value=2.2e-14 Score=115.53 Aligned_cols=97 Identities=20% Similarity=0.311 Sum_probs=81.9
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
....+++++|++|+|||+++.++++++..|...+.... ....+|++||+||+|+... +.++. +
T Consensus 63 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~ivv~nK~D~~~~--~~~~~----~ 125 (160)
T cd00876 63 MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVK-----------DDEDIPIVLVGNKCDLENE--RQVSK----E 125 (160)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEEECCccccc--ceecH----H
Confidence 34568899999999999999999999999999988741 1245999999999999875 55665 7
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
++.+++++.+. ++++ +||+++.|++++|+.+.+.
T Consensus 126 ~~~~~~~~~~~-~~~~---------------~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 126 EGKALAKEWGC-PFIE---------------TSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHcCC-cEEE---------------eccCCCCCHHHHHHHHHhh
Confidence 78888888884 8888 9999999999999998865
No 114
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.54 E-value=3.1e-14 Score=118.73 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=89.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+.. ....|+.+++++|+|||+++..+|+.+..|+..+.+.. .....|+|||+|
T Consensus 53 l~D~~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~p~ilv~N 114 (180)
T cd04137 53 IVDTAGQDEYSI-------LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML-----------GKESVPIVLVGN 114 (180)
T ss_pred EEECCChHhhHH-------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 466666553331 12358999999999999999999999999998888742 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.+.. ++...+++..+. ++++ +||+++.|++++|.++.+.+.+..
T Consensus 115 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 115 KSDLHTQ--RQVST----EEGKELAESWGA-AFLE---------------SSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred chhhhhc--CccCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999765 55554 566777887775 7888 999999999999999999887653
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.53 E-value=2.1e-14 Score=119.71 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=78.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. +..+.||+++|++|+|||++++.+|+.+..|+.++.... ...++|++||||
T Consensus 62 l~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~iiv~n 123 (173)
T cd04154 62 IWDVGGQKTLR-------PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-----------RLAGATLLILAN 123 (173)
T ss_pred EEECCCCHHHH-------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-----------hhcCCCEEEEEE
Confidence 57777765322 235678999999999999999999999999998887521 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHc----CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQ----GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~----gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... . .. +++.++.+.. ...++++ |||++|.|++++|+++..
T Consensus 124 K~Dl~~~--~--~~----~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 124 KQDLPGA--L--SE----EEIREALELDKISSHHWRIQP---------------CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CcccccC--C--CH----HHHHHHhCccccCCCceEEEe---------------ccCCCCcCHHHHHHHHhc
Confidence 9999754 2 22 4444444321 1125666 999999999999988763
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.53 E-value=1.9e-14 Score=117.21 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=73.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++... .....||+++|++|+|||.++..+|+.+..|+.++.+.. ...++|++||+|
T Consensus 48 i~D~~G~~~~~-------~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~-----------~~~~~piilv~n 109 (160)
T cd04156 48 VWDVGGQEKMR-------TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNE-----------HIKGVPVVLLAN 109 (160)
T ss_pred EEECCCCHhHH-------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhch-----------hhcCCCEEEEEE
Confidence 56666654322 123458999999999999999999999999999987631 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee--cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE--ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E--e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... +.. + ++....++..+.+ .+++++ |||++|.||+++|+++.+
T Consensus 110 K~Dl~~~----~~~----~---~i~~~~~~~~~~~~~~~~~~~---------~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 110 KQDLPGA----LTA----E---EITRRFKLKKYCSDRDWYVQP---------CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CcccccC----cCH----H---HHHHHcCCcccCCCCcEEEEe---------cccccCCChHHHHHHHhc
Confidence 9999643 111 2 2222221111100 122333 999999999999998864
No 117
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.52 E-value=7.9e-14 Score=120.80 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=80.2
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
..||++++++|+|||++++.||..+..|+.++... ..++|+++||||+|+... .+. .+.
T Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~~i~lv~nK~Dl~~~---~~~-----~~~ 134 (215)
T PTZ00132 76 DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-------------CENIPIVLVGNKVDVKDR---QVK-----ARQ 134 (215)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-------------CCCCCEEEEEECccCccc---cCC-----HHH
Confidence 46899999999999999999999999999999864 234899999999998643 333 334
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
.++++..++ .+++ +||++|.|+++.|.++++.++.+.
T Consensus 135 ~~~~~~~~~-~~~e---------------~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 135 ITFHRKKNL-QYYD---------------ISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHhhcc
Confidence 467777776 7889 999999999999999999988643
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.52 E-value=5.6e-14 Score=111.77 Aligned_cols=106 Identities=25% Similarity=0.407 Sum_probs=85.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.... ....+++++|++|+|||++++++++.+..|+..+.... ...+|++||+|
T Consensus 53 l~D~~g~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~------------~~~~p~ivv~n 113 (159)
T cd00154 53 IWDTAGQERFRS-------ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYA------------PENIPIILVGN 113 (159)
T ss_pred EEecCChHHHHH-------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 577776653321 34568999999999999999999999999999998852 13489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
|+|+... ..+.. ++..+++++++. .+++ +||+++.+++++|.+++
T Consensus 114 K~D~~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 114 KIDLEDQ--RQVST----EEAQQFAKENGL-LFFE---------------TSAKTGENVEELFQSLA 158 (159)
T ss_pred ccccccc--ccccH----HHHHHHHHHcCC-eEEE---------------EecCCCCCHHHHHHHHh
Confidence 9999733 34454 778889988775 8888 99999999999998875
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.50 E-value=7.3e-14 Score=114.37 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=74.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+.. ..+.||+++|++|+|||++++.++..+..|+..+.+.. ....+|++||+|
T Consensus 47 i~Dt~G~~~~~~-------~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~piiiv~n 108 (158)
T cd04151 47 VWDLGGQTSIRP-------YWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-----------ELKGAVLLVFAN 108 (158)
T ss_pred EEECCCCHHHHH-------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch-----------hhcCCcEEEEEe
Confidence 577777664431 34679999999999999999999998887776665421 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... . .. + ++++.++. .++++ |||++|.|++++|+++++
T Consensus 109 K~Dl~~~--~--~~----~---~i~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 109 KQDMPGA--L--SE----A---EISEKLGLSELKDRTWSIFK---------------TSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCCCC--C--CH----H---HHHHHhCccccCCCcEEEEE---------------eeccCCCCHHHHHHHHhc
Confidence 9999744 1 11 1 22222221 13566 999999999999999875
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.49 E-value=8.7e-14 Score=117.21 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=72.7
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
.+.|+++++++|+|+|+++..+|+.+..|+.++.+.. ...++|++||+||+|+.. .++. ++
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-----------~~~~~pvivv~NK~Dl~~----~~~~----~~ 140 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-----------ELANVPFLILGNKIDLPG----AVSE----EE 140 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-----------cccCCCEEEEEeCCCCCC----CcCH----HH
Confidence 4568999999999999999999999999999987631 124589999999999863 3343 44
Q ss_pred HHHHHHHcCC---------------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 102 ARQWVEKQGL---------------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 102 a~~~a~~~gl---------------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
.+++...... ..+++ |||++|+|++++|+++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 141 LRQALGLYGTTTGKGVSLKVSGIRPIEVFM---------------CSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred HHHHhCcccccccccccccccCceeEEEEE---------------eEecCCCChHHHHHHHHhhC
Confidence 5544432111 13555 99999999999999998753
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.48 E-value=8.1e-14 Score=116.82 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=74.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.||+++|++|||||++++++|..+..|+.++.++. ...++|++||+|
T Consensus 63 l~D~~G~~~~~-------~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~-----------~~~~~p~viv~N 124 (174)
T cd04153 63 MWDIGGQESLR-------SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHE-----------DLRKAVLLVLAN 124 (174)
T ss_pred EEECCCCHHHH-------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhch-----------hhcCCCEEEEEE
Confidence 56666654322 224568999999999999999999999998888887631 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... +.. + ++.+.+++ ..+++ |||++|.||+++|++|.+
T Consensus 125 K~Dl~~~----~~~----~---~i~~~l~~~~~~~~~~~~~~---------------~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 125 KQDLKGA----MTP----A---EISESLGLTSIRDHTWHIQG---------------CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCCCC----CCH----H---HHHHHhCcccccCCceEEEe---------------cccCCCCCHHHHHHHHhc
Confidence 9998653 121 2 22222221 13455 999999999999998864
No 122
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.46 E-value=8.6e-14 Score=121.31 Aligned_cols=118 Identities=23% Similarity=0.384 Sum_probs=96.7
Q ss_pred CcccccccccccCCCCCCC-cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTG-QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~g-q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||-+||| .|| .+|+||+.++|..+|||+|+.-+|+.+.+|..++..... -|.+.++|+|+.+
T Consensus 79 LwdIagQe--------rfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~q--------Lpng~Pv~~vlla 142 (229)
T KOG4423|consen 79 LWDIAGQE--------RFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQ--------LPNGTPVPCVLLA 142 (229)
T ss_pred Hhcchhhh--------hhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCccc--------CCCCCcchheecc
Confidence 46666666 444 368999999999999999999999999999999877433 3457889999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
||||+.... ..+ ......++++++|+..|+| ||||++.|+.|+-..++.+++.+-
T Consensus 143 nkCd~e~~a--~~~---~~~~~d~f~kengf~gwte---------------ts~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 143 NKCDQEKSA--KNE---ATRQFDNFKKENGFEGWTE---------------TSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred chhccChHh--hhh---hHHHHHHHHhccCccceee---------------eccccccChhHHHHHHHHHHHhhc
Confidence 999998652 111 1266888999999999999 999999999999999998887653
No 123
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.45 E-value=2.8e-13 Score=111.08 Aligned_cols=114 Identities=15% Similarity=0.051 Sum_probs=79.2
Q ss_pred CcccccccccccCCCCCCCccccccc---CCcEEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV---GDSGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr---~adgvIlVyDvT~~-~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
|||++|...... + .....+.|++ .+|++|+|+|+++. ++++++..|++++.... +....+|++
T Consensus 52 l~DtpG~~~~~~-~--~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~p~i 118 (170)
T cd01898 52 VADIPGLIEGAS-E--GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYN----------PELLEKPRI 118 (170)
T ss_pred EEecCcccCccc-c--cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhC----------ccccccccE
Confidence 788888532110 0 0012234444 59999999999999 89999999999998742 112358999
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
+|+||+|+.+. ..+. +....+.++.....+++ +||+++.|+++.|+++.+.
T Consensus 119 vv~NK~Dl~~~--~~~~-----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 119 VVLNKIDLLDE--EELF-----ELLKELLKELWGKPVFP---------------ISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEchhcCCc--hhhH-----HHHHHHHhhCCCCCEEE---------------EecCCCCCHHHHHHHHHhh
Confidence 99999999765 2221 44455555532236788 9999999999999988764
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.45 E-value=1.8e-13 Score=112.12 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=77.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.+|+++|++|+|+|.++.++++.+..|+.++.+.. ...++|++||+|
T Consensus 54 l~Dt~G~~~~~-------~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~-----------~~~~~p~ilv~N 115 (167)
T cd04160 54 FWDLGGQESLR-------SLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNE-----------ALEGVPLLILAN 115 (167)
T ss_pred EEECCCChhhH-------HHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhCh-----------hhcCCCEEEEEE
Confidence 57776655332 134568999999999999999999999999999887631 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHc----CC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQ----GL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~----gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... +.. ++..++.+.. +. .++++ +||++|.|+++.++++++
T Consensus 116 K~D~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 116 KQDLPDA----LSV----EEIKEVFQDKAEEIGRRDCLVLP---------------VSALEGTGVREGIEWLVE 166 (167)
T ss_pred ccccccC----CCH----HHHHHHhccccccccCCceEEEE---------------eeCCCCcCHHHHHHHHhc
Confidence 9998643 222 3344443332 11 14555 999999999999998864
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.44 E-value=3e-13 Score=110.14 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=77.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+.. ..+.+|+++|++|+|||+++.++|..+..|+..+..... ....|++||+|
T Consensus 47 i~D~~G~~~~~~-------~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piiiv~n 108 (158)
T cd00878 47 VWDVGGQDKIRP-------LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-----------LKGVPLLIFAN 108 (158)
T ss_pred EEECCCChhhHH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-----------cCCCcEEEEee
Confidence 688888775431 345689999999999999999999999999988877421 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHc----CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQ----GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~----gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... + .. ++..+..+.. ...++++ +||++|.|+++.|+++..
T Consensus 109 K~D~~~~--~--~~----~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 109 KQDLPGA--L--SV----SELIEKLGLEKILGRRWHIQP---------------CSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred ccCCccc--c--CH----HHHHHhhChhhccCCcEEEEE---------------eeCCCCCCHHHHHHHHhh
Confidence 9998754 2 11 2222222211 1124555 999999999999888764
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.43 E-value=3.6e-13 Score=114.37 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=76.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++... ...+.||+++|++|+|+|++++++|+.+..|+.++.+.. ...++|++||+|
T Consensus 65 ~~D~~G~~~~~-------~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-----------~~~~~piliv~N 126 (184)
T smart00178 65 TFDLGGHQQAR-------RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-----------ELATVPFLILGN 126 (184)
T ss_pred EEECCCCHHHH-------HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-----------hhcCCCEEEEEe
Confidence 56666654322 134579999999999999999999999999998887521 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCee--------ecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS--------EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~--------Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+|+... ++. ++ +.+.+++.... ..+-+++ |||++|.|+++++++|...
T Consensus 127 K~Dl~~~----~~~----~~---i~~~l~l~~~~~~~~~~~~~~~~i~~---------~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 127 KIDAPYA----ASE----DE---LRYALGLTNTTGSKGKVGVRPLEVFM---------CSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CccccCC----CCH----HH---HHHHcCCCcccccccccCCceeEEEE---------eecccCCChHHHHHHHHhh
Confidence 9998633 333 32 33333321100 0111333 9999999999999999754
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.41 E-value=4.9e-13 Score=111.00 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=76.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+ -..+..||+++|++|+|||+++..+++.+..|.... . .++|++||+|
T Consensus 71 l~Dt~G~~~~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---------------~~~~iiiv~N 127 (179)
T cd01890 71 LIDTPGHVDF-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---------------NNLEIIPVIN 127 (179)
T ss_pred EEECCCChhh-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---------------cCCCEEEEEE
Confidence 6777776532 134567999999999999999998888887775432 2 1278999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +. . +...++++.+++. .+++ +||++|.|++++|+++.+.+
T Consensus 128 K~Dl~~~--~~--~----~~~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 128 KIDLPSA--DP--E----RVKQQIEDVLGLDPSEAIL---------------VSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCCCCcC--CH--H----HHHHHHHHHhCCCcccEEE---------------eeccCCCCHHHHHHHHHhhC
Confidence 9998643 11 1 3345677777752 3667 99999999999999887654
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.37 E-value=1.9e-12 Score=106.12 Aligned_cols=87 Identities=20% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCcEEEEEEECCChhhH--HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTK--TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sf--e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
.+|++|+|+|.+++.++ +....|+.++... ..++|+|||+||+|+... +.+. +..++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-------------~~~~pvilv~NK~Dl~~~--~~~~------~~~~~ 137 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-------------FKNKPVIVVLNKIDLLTF--EDLS------EIEEE 137 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh-------------cCcCCeEEEEEccccCch--hhHH------HHHHh
Confidence 36899999999998764 6667888888763 124899999999999754 2222 24455
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++..+ .++++ |||++|.|++++|+++.+.|
T Consensus 138 ~~~~~-~~~~~---------------~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 138 EELEG-EEVLK---------------ISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hhhcc-CceEE---------------EEecccCCHHHHHHHHHHHh
Confidence 54444 36778 99999999999999999876
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.36 E-value=2.2e-12 Score=106.48 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=70.4
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
...|+++++++|+|||+++..+|..+..|+..+.... ....+|+++++||+|+... ..
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-----------~~~~~p~ivv~nK~D~~~~-----------~~ 132 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-----------KLAGVPVLVFANKQDLATA-----------AP 132 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-----------hhcCCCEEEEEECCCCccC-----------CC
Confidence 3467899999999999999999999998888876531 1234899999999998654 12
Q ss_pred HHHHHHHcCCCCeee-cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 102 ARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 102 a~~~a~~~gl~~~~E-e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
..++.+..++....+ ..++.+ +||++|.|++++|+++.+
T Consensus 133 ~~~i~~~l~~~~~~~~~~~~~~---------~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 133 AEEIAEALNLHDLRDRTWHIQA---------CSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred HHHHHHHcCCcccCCCeEEEEE---------eECCCCCCHHHHHHHHhc
Confidence 334555555432111 112233 999999999999999875
No 130
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.34 E-value=2.4e-12 Score=109.15 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=74.0
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
..+.||.++||+|||.|.++.+.+......+.++..+. ....+|++|++||+|+.+. ++. +
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~-----------~~~~~piLIl~NK~D~~~~----~~~----~ 134 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDP-----------ELKDIPILILANKQDLPDA----MSE----E 134 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSG-----------GGTTSEEEEEEESTTSTTS----STH----H
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchh-----------hcccceEEEEeccccccCc----chh----h
Confidence 56789999999999999999999999999999988732 2345999999999998754 222 2
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+......-..+ ..-..+.+.. |||++|.|+.|+|+||.+.+
T Consensus 135 ~i~~~l~l~~l-~~~~~~~v~~---------~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 135 EIKEYLGLEKL-KNKRPWSVFS---------CSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHTTGGGT-TSSSCEEEEE---------EBTTTTBTHHHHHHHHHHHH
T ss_pred HHHhhhhhhhc-ccCCceEEEe---------eeccCCcCHHHHHHHHHhcC
Confidence 23222221111 1001233444 99999999999999999864
No 131
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.33 E-value=3.8e-12 Score=114.37 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=71.6
Q ss_pred cccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
.+|.|++++|++|+|||++++. ||+.+.+|+..+.. .++|++||+||+||.+. +.+..
T Consensus 29 L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---------------~~i~~vIV~NK~DL~~~--~~~~~---- 87 (245)
T TIGR00157 29 LTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---------------QNIEPIIVLNKIDLLDD--EDMEK---- 87 (245)
T ss_pred EECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---------------CCCCEEEEEECcccCCC--HHHHH----
Confidence 4567999999999999999888 99999999987654 23899999999999755 33332
Q ss_pred HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 100 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
+.+..+. +.|. .+++ +||++|.|++++|+.+..
T Consensus 88 ~~~~~~~-~~g~-~v~~---------------~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 88 EQLDIYR-NIGY-QVLM---------------TSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHHH-HCCC-eEEE---------------EecCCchhHHHHHhhhcC
Confidence 3344443 4675 7888 999999999888877653
No 132
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.33 E-value=4.2e-12 Score=101.15 Aligned_cols=104 Identities=14% Similarity=0.220 Sum_probs=73.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|+|+++..+|..+..|+.++.... ....+|++||+|
T Consensus 48 ~~D~~g~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~p~iiv~n 109 (159)
T cd04159 48 VWDLGGQPRFR-------SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKP-----------SLEGIPLLVLGN 109 (159)
T ss_pred EEECCCCHhHH-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-----------hhcCCCEEEEEe
Confidence 46666554332 134568999999999999999999999998888876521 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+|+... .. ..++.+..++ .++++ +||++|.|++++++++++
T Consensus 110 K~D~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 110 KNDLPGA--LS---------VDELIEQMNLKSITDREVSCYS---------------ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred CccccCC--cC---------HHHHHHHhCcccccCCceEEEE---------------EEeccCCChHHHHHHHhh
Confidence 9998754 11 1112222221 13455 999999999999998864
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=4.7e-12 Score=118.93 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=76.3
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
++..++++|+|+|+++.++++++..|+.++..+. +...+.|++||+||+||... ..+.. +....
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~----------~~L~~kp~IIV~NKiDL~~~--~~~~~----~~~~~ 296 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYS----------PELADKPRILVLNKIDLLDE--EEERE----KRAAL 296 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhh----------hhcccCCeEEEEECcccCCc--hhHHH----HHHHH
Confidence 4557999999999999999999999999998752 22245899999999999755 22222 34555
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
+++..+. ++++ +||+++.||+++++++.+.+.+.
T Consensus 297 ~~~~~~~-~i~~---------------iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 297 ELAALGG-PVFL---------------ISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred HHHhcCC-CEEE---------------EEcCCCCCHHHHHHHHHHHHHhh
Confidence 5555554 6778 99999999999999998877653
No 134
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.28 E-value=9.1e-12 Score=100.04 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=65.2
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.+|+++|++|+|||++++.++.. ..|+..+ . .|+++|+||+||... .+.. +++.
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~-~~~~~~~----------------~--~p~ilv~NK~Dl~~~---~~~~----~~~~ 111 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFP-PGFASIF----------------V--KPVIGLVTKIDLAEA---DVDI----ERAK 111 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCC-hhHHHhc----------------c--CCeEEEEEeeccCCc---ccCH----HHHH
Confidence 35789999999999999999876 3454321 1 389999999999643 2333 6678
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
+++++.+..++++ +||++|.|+++.|+.+.
T Consensus 112 ~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 112 ELLETAGAEPIFE---------------ISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHcCCCcEEE---------------EecCCCCCHHHHHHHHh
Confidence 8888887657888 99999999999888763
No 135
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.22 E-value=2e-11 Score=100.24 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=68.3
Q ss_pred ccccCCcEEEEEEECCCh------hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCcc
Q 025248 24 VLVVGDSGVIFVHDLSQR------RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 97 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~------~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~ 97 (255)
.+++++|++|+|+|.++. .+++.+..|..++.......- .......|+++|+||+|+... ..+..
T Consensus 70 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~ivv~NK~Dl~~~--~~~~~-- 140 (176)
T cd01881 70 AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI-----LGLLTAKPVIYVLNKIDLDDA--EELEE-- 140 (176)
T ss_pred HHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhH-----HHHHhhCCeEEEEEchhcCch--hHHHH--
Confidence 467899999999999998 689999999988876410000 000135899999999999755 22211
Q ss_pred HHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 98 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 98 l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
..........+ ..+++ +||+++.|+++.++++++.
T Consensus 141 --~~~~~~~~~~~-~~~~~---------------~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 141 --ELVRELALEEG-AEVVP---------------ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred --HHHHHHhcCCC-CCEEE---------------EehhhhcCHHHHHHHHHhh
Confidence 11122222233 36677 9999999999999888754
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.22 E-value=1.8e-11 Score=104.66 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=67.5
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
.++++|++|+|+|++++.++..+..|...+.... ...+|++||+||+|+.... ....
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~------------~~~~~viiV~NK~Dl~~~~-----------~~~~ 173 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELG------------AEDIPMILVLNKIDLLDDE-----------ELEE 173 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC------------cCCCCEEEEEEccccCChH-----------HHHH
Confidence 3779999999999999999999888888776531 2348999999999997551 1113
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++...+ .++++ +||+++.|++++++++...|
T Consensus 174 ~~~~~~-~~~~~---------------~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 174 RLEAGR-PDAVF---------------ISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HhhcCC-CceEE---------------EEcCCCCCHHHHHHHHHhhC
Confidence 343333 36777 99999999999999887653
No 137
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.22 E-value=5.8e-11 Score=101.11 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=78.6
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
.-+.|+.-+||++||||..|++||+.+.-...+|.+ ..+.+.+||+|+|||+|+... +.|.. +
T Consensus 77 Lprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk-----------~KdKKEvpiVVLaN~rdr~~p--~~vd~----d 139 (198)
T KOG3883|consen 77 LPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDK-----------HKDKKEVPIVVLANKRDRAEP--REVDM----D 139 (198)
T ss_pred hhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhh-----------ccccccccEEEEechhhcccc--hhcCH----H
Confidence 446899999999999999999999998766666666 334677999999999999866 88887 9
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
.|..||+.... ..+| ++|++...+-|-|..+..
T Consensus 140 ~A~~Wa~rEkv-kl~e---------------Vta~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 140 VAQIWAKREKV-KLWE---------------VTAMDRPSLYEPFTYLAS 172 (198)
T ss_pred HHHHHHhhhhe-eEEE---------------EEeccchhhhhHHHHHHH
Confidence 99999999886 8888 999999655555544443
No 138
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.20 E-value=8.9e-11 Score=100.78 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=83.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC-hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ-RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~-~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
.||.+|++.+. ...+.||++++++|+|||+++ ..+++....|..++.... ...+|+++||
T Consensus 58 ~~Dt~gq~~~~-------~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~------------~~~~~iilv~ 118 (219)
T COG1100 58 LWDTAGQEEYR-------SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA------------PDDVPILLVG 118 (219)
T ss_pred eecCCCHHHHH-------HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhC------------CCCceEEEEe
Confidence 48888888776 245579999999999999999 556666679999998852 1359999999
Q ss_pred eCCCCCCCCC----------CccCCccHHHHHHHHHHHc--CCCCeeecCCCCCCCCCCCCcceeee--cCCCHHHHHHH
Q 025248 81 NKADVAAKEG----------TRGSSGNLVDAARQWVEKQ--GLLPSSEELPLTESFPGGGGLIAAAK--EARYDKEAVMK 146 (255)
Q Consensus 81 NK~DL~~~~~----------r~Vs~~~l~e~a~~~a~~~--gl~~~~Ee~p~~e~~~~~~~~~tSAk--~g~nv~e~f~~ 146 (255)
||+||..... +.+.. ......+... ....+++ +||+ ++.+|.++|..
T Consensus 119 nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---------------~s~~~~~~~~v~~~~~~ 179 (219)
T COG1100 119 NKIDLFDEQSSSEEILNQLNREVVL----LVLAPKAVLPEVANPALLE---------------TSAKSLTGPNVNELFKE 179 (219)
T ss_pred cccccccchhHHHHHHhhhhcCcch----hhhHhHHhhhhhcccceeE---------------eecccCCCcCHHHHHHH
Confidence 9999987621 01111 2222222222 1123666 9999 99999999999
Q ss_pred HHHHHHHH
Q 025248 147 FFRMLIRR 154 (255)
Q Consensus 147 l~~~li~~ 154 (255)
+++.+.+.
T Consensus 180 ~~~~~~~~ 187 (219)
T COG1100 180 LLRKLLEE 187 (219)
T ss_pred HHHHHHHh
Confidence 99998754
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.20 E-value=1.9e-11 Score=99.03 Aligned_cols=103 Identities=16% Similarity=0.030 Sum_probs=65.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+. ..+..+++++|++|+|+|+++ ..+++.+. .+... + ..|++|
T Consensus 55 ~~DtpG~~~~~-------~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~-------------~-~~~~il 109 (164)
T cd04171 55 FIDVPGHEKFI-------KNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL-------------G-IKRGLV 109 (164)
T ss_pred EEECCChHHHH-------HHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh-------------C-CCcEEE
Confidence 68888876442 234467899999999999987 45554433 22221 1 138999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcC--CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQG--LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g--l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
|+||+|+........ ..++..++.+..+ ..++++ +||+++.|++++|+.+.
T Consensus 110 v~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 110 VLTKADLVDEDWLEL----VEEEIRELLAGTFLADAPIFP---------------VSAVTGEGIEELKEYLD 162 (164)
T ss_pred EEECccccCHHHHHH----HHHHHHHHHHhcCcCCCcEEE---------------EeCCCCcCHHHHHHHHh
Confidence 999999975410011 1133444444421 126667 99999999999888765
No 140
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.18 E-value=4.8e-11 Score=111.81 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=81.5
Q ss_pred CcccccccccccCCCCCCCccccccc---CCcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV---GDSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr---~adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP 75 (255)
+||.+|...... ...+....|++ .++++|+|+|+++. ++++++..|.+++..+. ......|
T Consensus 209 i~D~PGli~~a~---~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~----------~~l~~kp 275 (329)
T TIGR02729 209 IADIPGLIEGAS---EGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS----------PELAEKP 275 (329)
T ss_pred EEeCCCcccCCc---ccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh----------hhhccCC
Confidence 677777532111 11123334555 69999999999987 79999999999987752 1123589
Q ss_pred EEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 76 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 76 iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++||+||+|+... .. +.+..++++++.+. .+++ +||+++.||+++++++.+.|
T Consensus 276 ~IIV~NK~DL~~~--~~-----~~~~~~~l~~~~~~-~vi~---------------iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 276 RIVVLNKIDLLDE--EE-----LAELLKELKKALGK-PVFP---------------ISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEEeCccCCCh--HH-----HHHHHHHHHHHcCC-cEEE---------------EEccCCcCHHHHHHHHHHHh
Confidence 9999999999754 21 12455667766664 7788 99999999999999888654
No 141
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.3e-11 Score=106.60 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=87.3
Q ss_pred CCcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 1 MFWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 1 ~~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
||||..|++.- -....-||-.+||+|+|+|.++++.|+....-++.+..+.. ...+|+++.+
T Consensus 72 ~fwdlgGQe~l-------rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~-----------leg~p~L~la 133 (197)
T KOG0076|consen 72 SFWDLGGQESL-------RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEK-----------LEGAPVLVLA 133 (197)
T ss_pred EEEEcCChHHH-------HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH-----------hcCCchhhhc
Confidence 69999998832 23455699999999999999999999999988888877542 2349999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
||.|+.+. .++.++-.-+++ +..--++++.. +||.+|+||+|+++|+++.+.++
T Consensus 134 nkqd~q~~-----------~~~~El~~~~~~~e~~~~rd~~~~p---------vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 134 NKQDLQNA-----------MEAAELDGVFGLAELIPRRDNPFQP---------VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhhhh-----------hhHHHHHHHhhhhhhcCCccCcccc---------chhhhcccHHHHHHHHHHHHhhc
Confidence 99999865 222222222221 01112566777 99999999999999999998876
No 142
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.1e-10 Score=101.04 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=83.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||-+|++- .--..+.||++++++|||.|-+|++.+..++..+..+..+ ++...+|+++.+|
T Consensus 65 vWDvGGq~k-------~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~-----------~~l~~~~llv~aN 126 (181)
T KOG0070|consen 65 VWDVGGQEK-------LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAE-----------PELRNAPLLVFAN 126 (181)
T ss_pred EEecCCCcc-------cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcC-----------cccCCceEEEEec
Confidence 577666631 1123678999999999999999999999999988888874 2345699999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee-cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E-e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|.|+.+. .+ +.++.+.+++..+.. ...+.. |+|.+|+++.|+++++..++.++
T Consensus 127 KqD~~~a----ls-------~~ei~~~L~l~~l~~~~w~iq~---------~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 127 KQDLPGA----LS-------AAEITNKLGLHSLRSRNWHIQS---------TCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred hhhcccc----CC-------HHHHHhHhhhhccCCCCcEEee---------ccccccccHHHHHHHHHHHHhcc
Confidence 9999876 22 334444444321111 222333 99999999999999999887553
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.16 E-value=1.7e-10 Score=93.13 Aligned_cols=107 Identities=14% Similarity=0.046 Sum_probs=74.0
Q ss_pred CcccccccccccCCCCCCCccccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV--GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr--~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
|||++|.+.+..-.. .-+..+.|+. ++|++|+|+|.++.+.. ..|+.++... .+|+++|
T Consensus 47 liDtpG~~~~~~~~~-~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~---------------~~~~iiv 107 (158)
T cd01879 47 IVDLPGTYSLSPYSE-DEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLEL---------------GLPVVVA 107 (158)
T ss_pred EEECCCccccCCCCh-hHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHHc---------------CCCEEEE
Confidence 678887654331100 0012345665 99999999999986543 3555555542 2899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
+||+|+.+. ..+. .....+++.+++ ++++ +||+++.|+++.++.+.+.
T Consensus 108 ~NK~Dl~~~--~~~~-----~~~~~~~~~~~~-~~~~---------------iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 108 LNMIDEAEK--RGIK-----IDLDKLSELLGV-PVVP---------------TSARKGEGIDELKDAIAEL 155 (158)
T ss_pred Eehhhhccc--ccch-----hhHHHHHHhhCC-CeEE---------------EEccCCCCHHHHHHHHHHH
Confidence 999999765 3333 334577777776 7888 9999999999998888764
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.13 E-value=2.9e-10 Score=87.72 Aligned_cols=93 Identities=26% Similarity=0.455 Sum_probs=67.1
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH-
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA- 101 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~- 101 (255)
..+++.+|++|+|+|+++..+++.+..|+....... ....+|++||+||+|+.... .... ..
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ivv~nk~D~~~~~--~~~~----~~~ 125 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINK-----------EGENIPIILVGNKIDLPEER--VVSE----EEL 125 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhh-----------ccCCCcEEEEEecccccccc--chHH----HHH
Confidence 458899999999999999999999998843333211 13459999999999997652 1111 11
Q ss_pred HHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 102 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
...+....+ .++++ +||+++.++++++++++
T Consensus 126 ~~~~~~~~~-~~~~~---------------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 126 AEQLAKELG-VPYFE---------------TSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHhhcC-CcEEE---------------EecCCCCChHHHHHHHh
Confidence 223333333 47788 99999999999998875
No 145
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.10 E-value=1.2e-10 Score=93.40 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=69.6
Q ss_pred Cccccccccccc-CCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKEL-NGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~-~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||++|.+.... .+.....+...+++++|++|+|+|.++..+.... ++.+.... ..+|+++|+
T Consensus 49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~--------------~~~piiiv~ 112 (157)
T cd01894 49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK--------------SKKPVILVV 112 (157)
T ss_pred EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh--------------cCCCEEEEE
Confidence 577776654331 0111111233578899999999999887666543 33333321 128999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
||+|+... +...+.....++..+++ +||+++.|++++|+++++.+
T Consensus 113 nK~D~~~~-----------~~~~~~~~~~~~~~~~~---------------~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 113 NKVDNIKE-----------EDEAAEFYSLGFGEPIP---------------ISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred ECcccCCh-----------HHHHHHHHhcCCCCeEE---------------EecccCCCHHHHHHHHHhhC
Confidence 99999765 11122333455546677 99999999999999988753
No 146
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.10 E-value=3.6e-10 Score=96.88 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=78.7
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH-
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV- 99 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~- 99 (255)
-.+.||..+||+|+|+|.+|+..|+.+...+.++..... ....|++|++||.|+.+. ++.+.+.
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eer-----------laG~~~Lvlank~dl~~~----l~~~~i~~ 140 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEER-----------LAGAPLLVLANKQDLPGA----LSLEEISK 140 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhh-----------hcCCceEEEEecCcCccc----cCHHHHHH
Confidence 356899999999999999999999999988888876321 122799999999999854 2221111
Q ss_pred -HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 100 -DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 100 -e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
-...++++...+ +.+. |||.+|+++.++|+|++..+.++++
T Consensus 141 ~~~L~~l~ks~~~-~l~~---------------cs~~tge~l~~gidWL~~~l~~r~~ 182 (185)
T KOG0073|consen 141 ALDLEELAKSHHW-RLVK---------------CSAVTGEDLLEGIDWLCDDLMSRLF 182 (185)
T ss_pred hhCHHHhccccCc-eEEE---------------EeccccccHHHHHHHHHHHHHHHhc
Confidence 112334444443 4455 9999999999999999999999765
No 147
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.09 E-value=1.4e-10 Score=96.93 Aligned_cols=88 Identities=14% Similarity=0.195 Sum_probs=67.8
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.++++||++|+|||.++..++. ..|+.++. ...|+++|+||+|+... .. +.+.
T Consensus 60 ~~~~~ad~il~v~d~~~~~s~~--~~~~~~~~----------------~~~~ii~v~nK~Dl~~~-----~~----~~~~ 112 (158)
T PRK15467 60 TTLQDVDMLIYVHGANDPESRL--PAGLLDIG----------------VSKRQIAVISKTDMPDA-----DV----AATR 112 (158)
T ss_pred HHHhcCCEEEEEEeCCCccccc--CHHHHhcc----------------CCCCeEEEEEccccCcc-----cH----HHHH
Confidence 3478999999999999998873 35665532 12689999999998643 12 5677
Q ss_pred HHHHHcCC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 104 QWVEKQGL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 104 ~~a~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+++++.++ .++++ +||++|.|+++.|+.+.+.+-+
T Consensus 113 ~~~~~~~~~~p~~~---------------~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 113 KLLLETGFEEPIFE---------------LNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHcCCCCCEEE---------------EECCCccCHHHHHHHHHHhchh
Confidence 88888875 36777 9999999999999988776644
No 148
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=7.3e-11 Score=103.19 Aligned_cols=106 Identities=21% Similarity=0.304 Sum_probs=84.0
Q ss_pred cCCCCCCCccc-ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCC
Q 025248 13 LNGGPPTGQVR-VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 91 (255)
Q Consensus 13 ~~g~~~~gq~r-~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r 91 (255)
++|++.+|-.+ -||-.+.|+|++||++.+-++.++..|..++.+. ..++||+++|||.|+...
T Consensus 66 tagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv-------------~~NiPiv~cGNKvDi~~r--- 129 (216)
T KOG0096|consen 66 TAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV-------------RENIPIVLCGNKVDIKAR--- 129 (216)
T ss_pred cccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHH-------------hcCCCeeeeccceecccc---
Confidence 34444554444 4999999999999999999999999999999885 234999999999998764
Q ss_pred ccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 92 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 92 ~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
++. .+...+-++.++ .|+| +|||.+.|.+..|.++.+.+.-..
T Consensus 130 ~~k-----~k~v~~~rkknl-~y~~---------------iSaksn~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 130 KVK-----AKPVSFHRKKNL-QYYE---------------ISAKSNYNFERPFLWLARKLTGDP 172 (216)
T ss_pred ccc-----cccceeeecccc-eeEE---------------eecccccccccchHHHhhhhcCCC
Confidence 222 234455566675 8889 999999999999999998886543
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.07 E-value=1.7e-10 Score=112.36 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=74.4
Q ss_pred Ccccccccccc--cCCCCCCCccc--ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKE--LNGGPPTGQVR--VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~--~~g~~~~gq~r--~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
|||++|.+.+- ..|...+...+ .++++||++|+|||.++..+++.+. |+..+... .+|+|
T Consensus 263 l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~---------------~~piI 326 (472)
T PRK03003 263 FVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA---------------GRALV 326 (472)
T ss_pred EEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---------------CCCEE
Confidence 68888753221 11333333332 3689999999999999999999874 55555442 28999
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
||+||+||.....+.. +.++..+........++++ |||++|.||+++|+.+.+.+-
T Consensus 327 iV~NK~Dl~~~~~~~~----~~~~i~~~l~~~~~~~~~~---------------~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 327 LAFNKWDLVDEDRRYY----LEREIDRELAQVPWAPRVN---------------ISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEEECcccCChhHHHH----HHHHHHHhcccCCCCCEEE---------------EECCCCCCHHHHHHHHHHHHH
Confidence 9999999975311000 0111211111122235566 999999999999999987654
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.04 E-value=2.8e-10 Score=110.96 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=73.2
Q ss_pred CcccccccccccCC--CCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNG--GPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g--~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|.+... .+ .....++..|+++||++|||||+++..++.. ..|+..+... .+|+|||
T Consensus 90 l~DT~G~~~~~-~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~---------------~~piilV 152 (472)
T PRK03003 90 VVDTGGWEPDA-KGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRRS---------------GKPVILA 152 (472)
T ss_pred EEeCCCcCCcc-hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEE
Confidence 68887765211 11 0112345678999999999999999887653 3455555432 3899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+||+|+.... . +....+ ..++...++ +||++|.|++++|++++..+.+
T Consensus 153 ~NK~Dl~~~~-----~----~~~~~~--~~g~~~~~~---------------iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 153 ANKVDDERGE-----A----DAAALW--SLGLGEPHP---------------VSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EECccCCccc-----h----hhHHHH--hcCCCCeEE---------------EEcCCCCCcHHHHHHHHhhccc
Confidence 9999986431 1 222222 345434466 9999999999999999887744
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.02 E-value=3.5e-10 Score=88.18 Aligned_cols=63 Identities=30% Similarity=0.501 Sum_probs=47.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH---HHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ---KWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~---~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||.+|++.+.. +.+.++.++|++|||||++++.||+.+. +|+..+... ..++|+||
T Consensus 54 ~~d~~g~~~~~~-------~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~-------------~~~~piil 113 (119)
T PF08477_consen 54 FWDFGGQEEFYS-------QHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR-------------DKNIPIIL 113 (119)
T ss_dssp EEEESSSHCHHC-------TSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH-------------SSCSEEEE
T ss_pred EEecCccceecc-------cccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc-------------CCCCCEEE
Confidence 677776654442 2234589999999999999999999975 566666653 34499999
Q ss_pred EEeCCC
Q 025248 79 IGNKAD 84 (255)
Q Consensus 79 VGNK~D 84 (255)
||||.|
T Consensus 114 v~nK~D 119 (119)
T PF08477_consen 114 VGNKSD 119 (119)
T ss_dssp EEE-TC
T ss_pred EEeccC
Confidence 999998
No 152
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.00 E-value=1.5e-09 Score=105.27 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=82.0
Q ss_pred CcccccccccccCCCCCCCccccccc---CCcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV---GDSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr---~adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP 75 (255)
|||.+|-...-. ...|....|++ .++++|+|+|+++. ++++++..|..++..+. +.....|
T Consensus 210 laD~PGliega~---~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~----------~~L~~kP 276 (424)
T PRK12297 210 MADIPGLIEGAS---EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN----------PRLLERP 276 (424)
T ss_pred EEECCCCccccc---ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc----------hhccCCc
Confidence 577776432111 11123344554 58999999999865 78899999999998752 2234589
Q ss_pred EEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 76 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 76 iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
+|||+||+||... . +...++++.++. ++++ +||+++.|+++.++++.+.+.+.+
T Consensus 277 ~IVV~NK~DL~~~------~----e~l~~l~~~l~~-~i~~---------------iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 277 QIVVANKMDLPEA------E----ENLEEFKEKLGP-KVFP---------------ISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred EEEEEeCCCCcCC------H----HHHHHHHHHhCC-cEEE---------------EeCCCCCCHHHHHHHHHHHHHhCc
Confidence 9999999998432 1 445667777663 6777 999999999999999988776543
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.00 E-value=4.9e-10 Score=105.87 Aligned_cols=109 Identities=11% Similarity=0.005 Sum_probs=72.2
Q ss_pred Ccccccc-cccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERER-ENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~-~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||+.|. ......-.+.|-.+..++++||++|+|+|++++.+++.+..|...+.... ..++|+++|+
T Consensus 241 l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~------------~~~~piIlV~ 308 (351)
T TIGR03156 241 LTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELG------------AEDIPQLLVY 308 (351)
T ss_pred EEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc------------cCCCCEEEEE
Confidence 6888775 21000000112223346889999999999999999998888876665531 2348999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+|+... +....+. . +..++++ +||++|.|+++.++.+...
T Consensus 309 NK~Dl~~~-----------~~v~~~~-~-~~~~~i~---------------iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 309 NKIDLLDE-----------PRIERLE-E-GYPEAVF---------------VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EeecCCCh-----------HhHHHHH-h-CCCCEEE---------------EEccCCCCHHHHHHHHHhh
Confidence 99999653 1111111 1 1125677 9999999999988887654
No 154
>PRK04213 GTP-binding protein; Provisional
Probab=98.98 E-value=3.1e-10 Score=96.66 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=43.2
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCC--------CeeecCCCCCCCCCCCCcceeeecCCCHHHHH
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL--------PSSEELPLTESFPGGGGLIAAAKEARYDKEAV 144 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~--------~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f 144 (255)
++|++||+||+|+... + . +.+.++++.+++. .+++ +||++| |++++|
T Consensus 130 ~~p~iiv~NK~Dl~~~--~---~----~~~~~~~~~~~~~~~~~~~~~~~~~---------------~SA~~g-gi~~l~ 184 (201)
T PRK04213 130 GIPPIVAVNKMDKIKN--R---D----EVLDEIAERLGLYPPWRQWQDIIAP---------------ISAKKG-GIEELK 184 (201)
T ss_pred CCCeEEEEECccccCc--H---H----HHHHHHHHHhcCCccccccCCcEEE---------------EecccC-CHHHHH
Confidence 4899999999999754 2 1 4567777777752 2455 999999 999999
Q ss_pred HHHHHHHHH
Q 025248 145 MKFFRMLIR 153 (255)
Q Consensus 145 ~~l~~~li~ 153 (255)
+++.+.+.+
T Consensus 185 ~~l~~~~~~ 193 (201)
T PRK04213 185 EAIRKRLHE 193 (201)
T ss_pred HHHHHhhcC
Confidence 999887643
No 155
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.98 E-value=8.4e-10 Score=94.17 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=70.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. .++..|++++|++|+|||+++. .+.....|+..+... .+|++||+|
T Consensus 69 l~DtpG~~~~~-------~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~~---------------~~p~iiv~N 125 (194)
T cd01891 69 IVDTPGHADFG-------GEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALEL---------------GLKPIVVIN 125 (194)
T ss_pred EEECCCcHHHH-------HHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHHc---------------CCCEEEEEE
Confidence 67777766432 3567799999999999999974 344444555555432 389999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHH------HHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK------EAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~------e~f~~l~~~li~ 153 (255)
|+|+... +. ....+++.++....+...-.-.+++.+ +||++|.|+. +.+.+|+..|.+
T Consensus 126 K~Dl~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~iv~---------~Sa~~g~~~~~~~~~~~~~~~l~~~~~~ 189 (194)
T cd01891 126 KIDRPDA--RP---EEVVDEVFDLFIELGATEEQLDFPVLY---------ASAKNGWASLNLEDPSEDLEPLFDTIIE 189 (194)
T ss_pred CCCCCCC--CH---HHHHHHHHHHHHHhCCccccCccCEEE---------eehhccccccccccchhhHHHHHHHHHh
Confidence 9999654 22 112245555554332100000223333 9999998873 345566665544
No 156
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.95 E-value=1.1e-09 Score=110.04 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=76.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. +.+..|+++||++|||+|.++..+++.+..|...+.. ++|+++|+|
T Consensus 74 liDTPG~~dF~-------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~----------------~ipiIiViN 130 (595)
T TIGR01393 74 LIDTPGHVDFS-------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN----------------DLEIIPVIN 130 (595)
T ss_pred EEECCCcHHHH-------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc----------------CCCEEEEEE
Confidence 56666665332 3466799999999999999998888887777654422 278999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+|+... . .. +...++++.+++. .+++ +||++|.|++++|+.+++.+.
T Consensus 131 KiDl~~~--~--~~----~~~~el~~~lg~~~~~vi~---------------vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 131 KIDLPSA--D--PE----RVKKEIEEVIGLDASEAIL---------------ASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred CcCCCcc--C--HH----HHHHHHHHHhCCCcceEEE---------------eeccCCCCHHHHHHHHHHhCC
Confidence 9998643 1 11 3345666666752 2566 999999999999988887653
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.94 E-value=1.3e-09 Score=105.98 Aligned_cols=106 Identities=20% Similarity=0.151 Sum_probs=76.6
Q ss_pred CcccccccccccCCCCCCC--cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTG--QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~g--q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|.+..+- -.+..| ....|++++|++|+|||++++.+++.+ |+.++.. ..+|+|+|
T Consensus 255 l~DTaG~~~~~~-~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---------------~~~piIlV 316 (442)
T TIGR00450 255 LLDTAGIREHAD-FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---------------SKKPFILV 316 (442)
T ss_pred EeeCCCcccchh-HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---------------CCCCEEEE
Confidence 688888653220 001111 234689999999999999999999876 8777643 13799999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
+||+|+... +..++++.+++ ++++ +|||+ .||+++|+.+.+.+.+.
T Consensus 317 ~NK~Dl~~~------------~~~~~~~~~~~-~~~~---------------vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 317 LNKIDLKIN------------SLEFFVSSKVL-NSSN---------------LSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EECccCCCc------------chhhhhhhcCC-ceEE---------------EEEec-CCHHHHHHHHHHHHHHH
Confidence 999999632 12345666665 6788 99998 69999999999987654
No 158
>PRK15494 era GTPase Era; Provisional
Probab=98.93 E-value=8.3e-10 Score=103.61 Aligned_cols=111 Identities=6% Similarity=-0.039 Sum_probs=71.4
Q ss_pred CcccccccccccC-CCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELN-GGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~-g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
|||++|....... +.........++++||++|||+|.++ +|+.+. .|+..+... ..|+|||
T Consensus 104 ~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---------------~~p~IlV 166 (339)
T PRK15494 104 LYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---------------NIVPIFL 166 (339)
T ss_pred EEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---------------CCCEEEE
Confidence 8999887422110 10000111235789999999999654 677775 455555542 2577889
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+||+|+... . . .++.+++++.+ ...+++ +||++|.|++++|+++...+.+
T Consensus 167 iNKiDl~~~--~---~----~~~~~~l~~~~~~~~i~~---------------iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 167 LNKIDIESK--Y---L----NDIKAFLTENHPDSLLFP---------------ISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred EEhhcCccc--c---H----HHHHHHHHhcCCCcEEEE---------------EeccCccCHHHHHHHHHHhCCC
Confidence 999998643 1 1 44556665543 235677 9999999999999888776544
No 159
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.93 E-value=1.2e-09 Score=98.70 Aligned_cols=111 Identities=16% Similarity=0.095 Sum_probs=73.2
Q ss_pred CcccccccccccC-CCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELN-GGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~-g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||++|....... +......+..+++++|++|+|+|.++..+++ ..++..+.. ...|+++|+
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---------------~~~p~ilV~ 114 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---------------LKRPVVLTR 114 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---------------cCCCEEEEE
Confidence 7888775432110 0000112345789999999999999988875 345544443 238999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
||+|+... .. +.+...++++..++.++++ +||++|.|+++.++.+...+
T Consensus 115 NK~Dl~~~--~~-----~~~~~~~~~~~~~~~~v~~---------------iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 115 NKLDNKFK--DK-----LLPLIDKYAILEDFKDIVP---------------ISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred ECeeCCCH--HH-----HHHHHHHHHhhcCCCceEE---------------EecCCCCCHHHHHHHHHHhC
Confidence 99999643 11 1244555665555445677 99999999998888877654
No 160
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.93 E-value=3.9e-09 Score=82.83 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=75.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh-hhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR-RTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~-~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||.+|++.++ .....+++.++++|+++|++.. .++.... .|...+.... ...+|++||
T Consensus 54 ~~D~~G~~~~~-------~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~------------~~~~p~ivv 114 (161)
T TIGR00231 54 LLDTAGQEDYR-------AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA------------ESNVPIILV 114 (161)
T ss_pred EEECCCcccch-------HHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc------------ccCCcEEEE
Confidence 46666654333 1234568899999999999999 8888877 8888877742 115899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 147 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l 147 (255)
+||+|+... . +. ..........+...+++ +||+++.|+++.|+.+
T Consensus 115 ~nK~D~~~~--~-~~-----~~~~~~~~~~~~~~~~~---------------~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 115 GNKIDLRDA--K-LK-----THVAFLFAKLNGEPIIP---------------LSAETGKNIDSAFKIV 159 (161)
T ss_pred EEcccCCcc--h-hh-----HHHHHHHhhccCCceEE---------------eecCCCCCHHHHHHHh
Confidence 999999764 2 11 33444444455457788 9999999999998875
No 161
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.92 E-value=3.2e-09 Score=86.62 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=63.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChh---hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRR---TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~---Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+. .....+++.+|++|+|+|.++.. +++.+ ..+.. ..+|+++
T Consensus 54 iiDtpG~~~~~-------~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~----~~~~~---------------~~~p~iv 107 (168)
T cd01887 54 FIDTPGHEAFT-------NMRARGASLTDIAILVVAADDGVMPQTIEAI----KLAKA---------------ANVPFIV 107 (168)
T ss_pred EEeCCCcHHHH-------HHHHHHHhhcCEEEEEEECCCCccHHHHHHH----HHHHH---------------cCCCEEE
Confidence 56666655332 12345789999999999999853 33332 22222 1278999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+||+|+.... . ..+.+...++.... ...+.+.+++++ +||++|.|++++++++.+..
T Consensus 108 v~NK~Dl~~~~--~---~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 108 ALNKIDKPNAN--P---ERVKNELSELGLQG-EDEWGGDVQIVP---------TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EEEceeccccc--H---HHHHHHHHHhhccc-cccccCcCcEEE---------eecccCCCHHHHHHHHHHhh
Confidence 99999987441 1 00111121111110 000111233444 99999999999998887654
No 162
>PRK11058 GTPase HflX; Provisional
Probab=98.92 E-value=2.9e-09 Score=103.12 Aligned_cols=93 Identities=10% Similarity=0.010 Sum_probs=66.1
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
..++++||++|+|+|.+++.+++.+..|...+.... ..++|+++|+||+|+.... . ...
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~------------~~~~pvIiV~NKiDL~~~~--~-------~~~ 329 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEID------------AHEIPTLLVMNKIDMLDDF--E-------PRI 329 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc------------cCCCCEEEEEEcccCCCch--h-------HHH
Confidence 345799999999999999999998866655444421 2248999999999996431 1 111
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
. ....+...+++ +||++|.|+++.++++...+..
T Consensus 330 -~-~~~~~~~~~v~---------------ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 330 -D-RDEENKPIRVW---------------LSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred -H-HHhcCCCceEE---------------EeCCCCCCHHHHHHHHHHHhhh
Confidence 1 11234322466 9999999999999999988754
No 163
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.91 E-value=1.9e-09 Score=89.24 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=70.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|..... .+...+++.+|++|+|+|.++..+.... .++..+.. ...|+++|+|
T Consensus 66 liDtpG~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---------------~~~~i~iv~n 122 (189)
T cd00881 66 FIDTPGHEDFS-------SEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---------------GGLPIIVAIN 122 (189)
T ss_pred EEeCCCcHHHH-------HHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---------------CCCCeEEEEE
Confidence 67777755332 2456788999999999999987765433 44444433 2389999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC-------CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL-------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~-------~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+.... ... ...+...+..+..+.. ......++++ +||++|.|+++.+.++.+.+
T Consensus 123 K~D~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 123 KIDRVGEE--DLE--EVLREIKELLGLIGFISTKEEGTRNGLLVPIVP---------GSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred CCCCcchh--cHH--HHHHHHHHHHccccccchhhhhcccCCcceEEE---------EecccCcCHHHHHHHHHhhC
Confidence 99997531 111 1113344444333210 0011233333 99999999999988887764
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.86 E-value=3.8e-09 Score=100.59 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=62.5
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.+++.||++|+|+|.++..+.+.+. ++..+... .+|+|||+||+||... .... .+...
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~---------------~~~iiiv~NK~Dl~~~---~~~~---~~~~~ 307 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR-IAGLILEA---------------GKALVIVVNKWDLVKD---EKTR---EEFKK 307 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc---------------CCcEEEEEECcccCCC---HHHH---HHHHH
Confidence 4789999999999999998887754 44444442 2799999999999722 1111 11112
Q ss_pred HHHHHc---CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 104 QWVEKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 104 ~~a~~~---gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
++.+.+ +..++++ +||++|.|++++|+++.+.+.
T Consensus 308 ~~~~~~~~~~~~~vi~---------------~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 308 ELRRKLPFLDFAPIVF---------------ISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred HHHHhcccCCCCceEE---------------EeCCCCCCHHHHHHHHHHHHH
Confidence 222222 2224555 999999999999999887554
No 165
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.85 E-value=7.6e-09 Score=87.76 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=82.5
Q ss_pred ccCCCCCCCcc-cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCC
Q 025248 12 ELNGGPPTGQV-RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 90 (255)
Q Consensus 12 ~~~g~~~~gq~-r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~ 90 (255)
|..|.|.|-.+ .-|||+++++++|.|..+++.++.....++.+... +....+|++|+|||.|+.+.
T Consensus 71 D~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k-----------~~l~gip~LVLGnK~d~~~A-- 137 (186)
T KOG0075|consen 71 DLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDK-----------PSLTGIPLLVLGNKIDLPGA-- 137 (186)
T ss_pred ecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcc-----------hhhcCCcEEEecccccCccc--
Confidence 44455544332 35899999999999999999999888888777763 23455999999999999876
Q ss_pred CccCCccHHHHHHHHHHHcCCCCeee-cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 91 TRGSSGNLVDAARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 91 r~Vs~~~l~e~a~~~a~~~gl~~~~E-e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
-.-.++.+++|+...-. |+..+. +|||+..|++...+|++++-
T Consensus 138 ---------L~~~~li~rmgL~sitdREvcC~s---------iScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 138 ---------LSKIALIERMGLSSITDREVCCFS---------ISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred ---------ccHHHHHHHhCccccccceEEEEE---------EEEcCCccHHHHHHHHHHHh
Confidence 22456778888743322 455554 99999999999999998764
No 166
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.84 E-value=5.9e-09 Score=81.76 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=69.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||..|.+...............+++.+|++++|+|.++..+..... |+..... ..+|++||+|
T Consensus 49 ~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---------------~~~~~ivv~n 112 (163)
T cd00880 49 LIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---------------RGKPVLLVLN 112 (163)
T ss_pred EEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---------------cCCeEEEEEE
Confidence 57777655332211110123345889999999999999999888766 4444433 3489999999
Q ss_pred CCCCCCCCCCccCCccHHH-HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVD-AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e-~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+|+.... .+.. ..+ .........+ .++++ +||+++.|+++.++.+.+.
T Consensus 113 K~D~~~~~--~~~~--~~~~~~~~~~~~~~-~~~~~---------------~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 113 KIDLLPEE--EEEE--LLELRLLILLLLLG-LPVIA---------------VSALTGEGIDELREALIEA 162 (163)
T ss_pred ccccCChh--hHHH--HHHHHHhhcccccC-CceEE---------------EeeeccCCHHHHHHHHHhh
Confidence 99987651 1110 000 0111111112 25555 9999999999888888764
No 167
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.82 E-value=3.3e-09 Score=91.88 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=63.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~----~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
|||++|++.+- ..+...+.++|++|+|+|.++. .+++.+..| ... + ..|++
T Consensus 87 ~iDtPG~~~~~-------~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-------------~-~~~ii 141 (203)
T cd01888 87 FVDCPGHEILM-------ATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-------------G-LKHII 141 (203)
T ss_pred EEECCChHHHH-------HHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-------------C-CCcEE
Confidence 67777765321 1222345667999999999973 445544333 221 1 14699
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHHHHHHHcC--CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG--LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g--l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
||+||+|+.... ... ...++.+++++... ..++++ +||++|.|++++|+.+...+
T Consensus 142 ivvNK~Dl~~~~--~~~--~~~~~i~~~~~~~~~~~~~i~~---------------vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 142 IVQNKIDLVKEE--QAL--ENYEQIKKFVKGTIAENAPIIP---------------ISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred EEEEchhccCHH--HHH--HHHHHHHHHHhccccCCCcEEE---------------EeCCCCCCHHHHHHHHHHhC
Confidence 999999997531 110 01133444444321 124556 99999999998888877544
No 168
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.81 E-value=3.5e-09 Score=84.70 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=61.2
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
..++..+|++++|+|++++.+......|.. . ...|+++|+||+|+.... . .
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~---------------~~~~vi~v~nK~D~~~~~--~---------~ 125 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILEL---P---------------ADKPIIVVLNKSDLLPDS--E---------L 125 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHHh---h---------------cCCCEEEEEEchhcCCcc--c---------c
Confidence 346789999999999999999888765543 1 128999999999997652 1 1
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
.....+ .++++ +||+++.|+++.++++...+
T Consensus 126 --~~~~~~-~~~~~---------------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 --LSLLAG-KPIIA---------------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred --ccccCC-CceEE---------------EECCCCCCHHHHHHHHHHhh
Confidence 122222 36777 99999999999998887654
No 169
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.79 E-value=1.6e-08 Score=97.03 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=73.8
Q ss_pred cccCCcEEEEEEECC---ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 25 LVVGDSGVIFVHDLS---QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 25 Yyr~adgvIlVyDvT---~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
++..++++|+|+|++ +.+.++++..|+.++..+. ......|+|||+||+|+... .. +.+.
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~----------~~L~~kP~IlVlNKiDl~~~--~e-----l~~~ 296 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS----------PKLAEKPRWLVFNKIDLLDE--EE-----AEER 296 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh----------hhhcCCCEEEEEeCCccCCh--HH-----HHHH
Confidence 578899999999999 6778899999999988741 11235899999999999754 11 1244
Q ss_pred HHHHHHHcCCC-CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 102 ARQWVEKQGLL-PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 102 a~~~a~~~gl~-~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
..++.+..+.. .++. +||+++.++++.++.+.+.+.+.
T Consensus 297 l~~l~~~~~~~~~Vi~---------------ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 297 AKAIVEALGWEGPVYL---------------ISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHhCCCCCEEE---------------EECCCCcCHHHHHHHHHHHhhhC
Confidence 55566554431 4566 99999999999999999888664
No 170
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.2e-08 Score=85.98 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=76.4
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
..|.||.++.|+|||.|..+++..+..+..+..+.+ .++...++++|.+||.|+.+. +.
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~-----------~~em~~~~~LvlANkQDlp~A--~~-------- 135 (180)
T KOG0071|consen 77 LWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIIN-----------DREMRDAIILILANKQDLPDA--MK-------- 135 (180)
T ss_pred HHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhC-----------CHhhhcceEEEEecCcccccc--cC--------
Confidence 467899999999999999999999999988888877 344667999999999999977 32
Q ss_pred HHHHHHHHcCCCCeee-cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~E-e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
..++.+.+++.+.-. .+.++. |||.+|.++.|.|.++...+
T Consensus 136 -pqei~d~leLe~~r~~~W~vqp---------~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 -PQEIQDKLELERIRDRNWYVQP---------SCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred -HHHHHHHhccccccCCccEeec---------cccccchhHHHHHHHHHhhc
Confidence 223333343322111 344566 99999999999999988654
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.76 E-value=6.5e-09 Score=83.01 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=61.0
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWA-VEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl-~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
.++.++|++++|+|.++.. .....|+ ..+... ..|+++|+||+|+... .. .+.+..
T Consensus 78 ~~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~~---------------~~~~iiv~nK~Dl~~~--~~----~~~~~~ 134 (168)
T cd04163 78 SALKDVDLVLFVVDASEPI--GEGDEFILELLKKS---------------KTPVILVLNKIDLVKD--KE----DLLPLL 134 (168)
T ss_pred HHHHhCCEEEEEEECCCcc--CchHHHHHHHHHHh---------------CCCEEEEEEchhcccc--HH----HHHHHH
Confidence 4688999999999999872 2233333 334331 3789999999999743 11 111444
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
..+....+..++++ +||+++.++++.++.+.+.
T Consensus 135 ~~~~~~~~~~~~~~---------------~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 135 EKLKELGPFAEIFP---------------ISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHhccCCCceEE---------------EEeccCCChHHHHHHHHhh
Confidence 45555554446777 9999999999988888654
No 172
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.76 E-value=1.4e-08 Score=101.98 Aligned_cols=108 Identities=16% Similarity=0.063 Sum_probs=73.8
Q ss_pred CcccccccccccCCCCCCCccccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV--GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr--~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|+....... ......+.|+. ++|++|+|+|.++.+ +...|..++.+ .++|+++|
T Consensus 45 lvDtPG~~~~~~~s-~~e~v~~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~---------------~~~PiIIV 105 (591)
T TIGR00437 45 IVDLPGIYSLTTFS-LEEEVARDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLE---------------LGIPMILA 105 (591)
T ss_pred EEECCCccccCccc-hHHHHHHHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHh---------------cCCCEEEE
Confidence 57777765432100 00011344544 799999999998743 33344445443 23899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+||+|+..+ +.+. .+.++++++.|+ ++++ +||++|.|+++.++.+.+.+
T Consensus 106 lNK~Dl~~~--~~i~-----~d~~~L~~~lg~-pvv~---------------tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 106 LNLVDEAEK--KGIR-----IDEEKLEERLGV-PVVP---------------TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EehhHHHHh--CCCh-----hhHHHHHHHcCC-CEEE---------------EECCCCCCHHHHHHHHHHHh
Confidence 999999755 3333 346788888886 8888 99999999999999988753
No 173
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.74 E-value=2.4e-08 Score=100.62 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=68.8
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
+.+..+++.+|++|||+|.++....+.+..|..... .++|+|+|+||+|+... .. .
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----------------~~lpiIvViNKiDl~~a--~~------~ 144 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----------------NDLEIIPVLNKIDLPAA--DP------E 144 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----------------CCCCEEEEEECCCCCcc--cH------H
Confidence 346678999999999999999877777666654322 12789999999998643 11 1
Q ss_pred HHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 100 DAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 100 e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
+...++.+.+++. .++. +||++|.|+++.++.+.+.+.
T Consensus 145 ~v~~ei~~~lg~~~~~vi~---------------iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 145 RVKQEIEDVIGIDASDAVL---------------VSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHHhCCCcceEEE---------------EecCCCCCHHHHHHHHHHhCc
Confidence 3344566656652 2566 999999999999988887664
No 174
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.74 E-value=8.3e-09 Score=100.37 Aligned_cols=103 Identities=18% Similarity=0.137 Sum_probs=71.2
Q ss_pred CcccccccccccCCCCCCC--cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTG--QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~g--q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||+.|.+.... -...+| .+..+++++|++|+|||.+++.+++.+..|.. . ..+|+++|
T Consensus 267 l~DT~G~~~~~~-~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~---~---------------~~~piiiV 327 (449)
T PRK05291 267 LIDTAGIRETDD-EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE---L---------------KDKPVIVV 327 (449)
T ss_pred EEeCCCCCCCcc-HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh---c---------------CCCCcEEE
Confidence 688887653110 000111 23458999999999999999999987665543 1 12799999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+||+||... .. .. ...+ ..+++ +||++|.|+++.++++.+.+..
T Consensus 328 ~NK~DL~~~--~~---------~~---~~~~-~~~i~---------------iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 328 LNKADLTGE--ID---------LE---EENG-KPVIR---------------ISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EEhhhcccc--ch---------hh---hccC-CceEE---------------EEeeCCCCHHHHHHHHHHHHhh
Confidence 999999754 11 11 1222 26677 9999999999999999887743
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.73 E-value=4.5e-08 Score=79.13 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=60.6
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.+++++|++|+|+|.++..++..+. ++..+.. ...|+++|+||+|+... +.... .....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---------------~~~~~iiv~nK~Dl~~~--~~~~~---~~~~~ 138 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---------------EGKALVIVVNKWDLVEK--DSKTM---KEFKK 138 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---------------cCCCEEEEEeccccCCc--cHHHH---HHHHH
Confidence 3578999999999999998877643 3333332 23799999999999765 21111 11122
Q ss_pred HHHHHcC---CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 104 QWVEKQG---LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 104 ~~a~~~g---l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
.+.+..+ ..++++ +||+++.|+++.++.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~---------------~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 139 EIRRKLPFLDYAPIVF---------------ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHHhhcccccCCceEE---------------EeccCCCCHHHHHHHHHHh
Confidence 2333332 124555 9999999999998887653
No 176
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.73 E-value=2.1e-08 Score=99.12 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=71.5
Q ss_pred cccCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhCCC-CCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 25 LVVGDSGVIFVHDLSQ----RRTKTSLQKWAVEIATSGTF-SAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~----~~Sfe~l~~Wl~ei~~~~~~-s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
++..++++|+|+|+++ ++.++.+..|..++..+... ..+.+ .......|+|||+||+|+.+. +.+ .
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~--~~~l~~kP~IVVlNKiDL~da--~el-----~ 303 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLG--LGDLAERPRLVVLNKIDVPDA--REL-----A 303 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccch--hhhhcCCCEEEEEECccchhh--HHH-----H
Confidence 4677999999999986 45777788888888765210 00000 001235899999999999754 221 1
Q ss_pred HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 100 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
+......++.++ ++++ +||+++.|+++++.+|.+.+-+.+
T Consensus 304 e~l~~~l~~~g~-~Vf~---------------ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 304 EFVRPELEARGW-PVFE---------------VSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHHHHhhh
Confidence 223333344554 6777 999999999999999998876543
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.72 E-value=2.1e-08 Score=95.98 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=68.2
Q ss_pred CcccccccccccC-CCCCCCcccccccCCcEEEEEEECCChhhHHH--HHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELN-GGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~-g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~--l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
+||++|.+..+.. ......++..+++++|++|+|+|.++..+... +..|+.+. .+|++|
T Consensus 53 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~------------------~~piil 114 (435)
T PRK00093 53 LIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS------------------NKPVIL 114 (435)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------------------CCcEEE
Confidence 6888887641110 00012234567899999999999998655533 33444321 279999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+||+|+.... +...++ .++++..+++ +||++|.|+++.|+.+..
T Consensus 115 v~NK~D~~~~~----------~~~~~~-~~lg~~~~~~---------------iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 115 VVNKVDGPDEE----------ADAYEF-YSLGLGEPYP---------------ISAEHGRGIGDLLDAILE 159 (435)
T ss_pred EEECccCccch----------hhHHHH-HhcCCCCCEE---------------EEeeCCCCHHHHHHHHHh
Confidence 99999975421 223333 3556645777 999999999988888876
No 178
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.71 E-value=2e-08 Score=102.69 Aligned_cols=109 Identities=21% Similarity=0.121 Sum_probs=70.4
Q ss_pred CCcccccccccccC-CCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 1 MFWKERERENKELN-GGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 1 ~~w~~~~~~~~~~~-g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
+|||++|.+..... ......|+..++++||++|||+|.++.-+ ... .|+..+... ++|+||
T Consensus 326 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~~---------------~~pvIl 388 (712)
T PRK09518 326 KLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT--STDERIVRMLRRA---------------GKPVVL 388 (712)
T ss_pred EEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHhc---------------CCCEEE
Confidence 37888886521110 00112345568999999999999986432 332 455555442 389999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+||+|+.... ....++. .+++...++ +||++|.||+++|++++..+.
T Consensus 389 V~NK~D~~~~~----------~~~~~~~-~lg~~~~~~---------------iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 389 AVNKIDDQASE----------YDAAEFW-KLGLGEPYP---------------ISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred EEECcccccch----------hhHHHHH-HcCCCCeEE---------------EECCCCCCchHHHHHHHHhcc
Confidence 99999986431 1122222 245434556 999999999999999888763
No 179
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.71 E-value=6.2e-08 Score=83.00 Aligned_cols=113 Identities=13% Similarity=0.240 Sum_probs=79.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
.||.+|+++.- .+.+.-.+++.++||+||+|.+.++.++..|..+.+... ..-+| |+||+
T Consensus 73 IwdlgG~~~~~-------n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N------------ktAiP-ilvGT 132 (205)
T KOG1673|consen 73 IWDLGGQREFI-------NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN------------KTAIP-ILVGT 132 (205)
T ss_pred EEecCCcHhhh-------ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC------------Cccce-EEecc
Confidence 37777766332 356778999999999999999999999999999987631 22255 67899
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|.|+--.-.+. -...+..+++.+|+.++. ..+- ||+....||...|.-+...+
T Consensus 133 KyD~fi~lp~e-~Q~~I~~qar~YAk~mnA-sL~F---------------~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 133 KYDLFIDLPPE-LQETISRQARKYAKVMNA-SLFF---------------CSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred chHhhhcCCHH-HHHHHHHHHHHHHHHhCC-cEEE---------------eeccccccHHHHHHHHHHHH
Confidence 99864221111 112344779999999997 5565 99999988665555444443
No 180
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.71 E-value=1.3e-08 Score=97.90 Aligned_cols=107 Identities=10% Similarity=-0.006 Sum_probs=67.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+- ..+..+++++|++|||+|.++.+++...+ .+...+... ....++|||+
T Consensus 89 iiDtpGh~~f~-------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-------------~~~~~iIVvi 148 (426)
T TIGR00483 89 IVDCPGHRDFI-------KNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-------------LGINQLIVAI 148 (426)
T ss_pred EEECCCHHHHH-------HHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-------------cCCCeEEEEE
Confidence 67777765331 12334578999999999999987553222 111122221 1124799999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 145 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~ 145 (255)
||+|+.+.. ......+.++..+++++.++ .++++ +||++|.|+++++.
T Consensus 149 NK~Dl~~~~--~~~~~~~~~ei~~~~~~~g~~~~~~~~i~---------------iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 149 NKMDSVNYD--EEEFEAIKKEVSNLIKKVGYNPDTVPFIP---------------ISAWNGDNVIKKSE 200 (426)
T ss_pred EChhccCcc--HHHHHHHHHHHHHHHHHcCCCcccceEEE---------------eecccccccccccc
Confidence 999997431 11111233667778887774 24555 99999999987553
No 181
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.70 E-value=5.7e-08 Score=82.85 Aligned_cols=90 Identities=18% Similarity=0.208 Sum_probs=60.9
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
+..|++++|++|+|+|+++... .|..++... ....|++||+||+||.... ... +.
T Consensus 28 l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-------------~~~~~~ilV~NK~Dl~~~~---~~~----~~ 82 (190)
T cd01855 28 LSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-------------GGNNPVILVGNKIDLLPKD---KNL----VR 82 (190)
T ss_pred HHhcccCCcEEEEEEECccCCC-----ccchhHHHh-------------cCCCcEEEEEEchhcCCCC---CCH----HH
Confidence 4568999999999999998642 244444221 1237999999999997541 111 33
Q ss_pred HHHHH-----HHcCC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 102 ARQWV-----EKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 102 a~~~a-----~~~gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
...|+ +..++ ..++. +||+++.|+++.++.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~---------------vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 83 IKNWLRAKAAAGLGLKPKDVIL---------------ISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred HHHHHHHHHHhhcCCCcccEEE---------------EECCCCCCHHHHHHHHHHHh
Confidence 44444 22332 24566 99999999999988887765
No 182
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.69 E-value=3.3e-08 Score=88.06 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
-+|+++|+||+|+... +++..+++.. .+++ +||+++.|++++|+.+++.|
T Consensus 176 y~p~iiV~NK~Dl~~~-----------~~~~~~~~~~---~~~~---------------~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLISI-----------EELDLLARQP---NSVV---------------ISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCCH-----------HHHHHHhcCC---CEEE---------------EcCCCCCCHHHHHHHHHHHh
Confidence 3799999999998654 5555565532 5678 99999999999999999876
No 183
>PRK00089 era GTPase Era; Reviewed
Probab=98.68 E-value=1.8e-08 Score=91.61 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=63.6
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.++.++|++++|+|+++. +.....|+.+... ...+|+++|+||+|+... +. .+.+...
T Consensus 80 ~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~--------------~~~~pvilVlNKiDl~~~--~~----~l~~~~~ 137 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEK--IGPGDEFILEKLK--------------KVKTPVILVLNKIDLVKD--KE----ELLPLLE 137 (292)
T ss_pred HHHhcCCEEEEEEeCCCC--CChhHHHHHHHHh--------------hcCCCEEEEEECCcCCCC--HH----HHHHHHH
Confidence 467899999999999983 2233334433333 123899999999999743 11 1225566
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++.+..+...++. +||+++.|+++.++.+...+
T Consensus 138 ~l~~~~~~~~i~~---------------iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 138 ELSELMDFAEIVP---------------ISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred HHHhhCCCCeEEE---------------ecCCCCCCHHHHHHHHHHhC
Confidence 6666666556777 99999999998888887765
No 184
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.65 E-value=3.1e-08 Score=98.46 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=74.5
Q ss_pred ccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCcc-HHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN-LVDA 101 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~-l~e~ 101 (255)
.=++.||++.+||+++++.|++.+. +|+..+++. ..+..++||||||||+|+.... ..+.+. ..--
T Consensus 75 ~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~----------~~~~~~~PVILvGNK~d~~~~~--~~s~e~~~~pi 142 (625)
T KOG1707|consen 75 KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQL----------FGDYHETPVILVGNKSDNGDNE--NNSDEVNTLPI 142 (625)
T ss_pred HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcc----------cCCCccCCEEEEeeccCCcccc--ccchhHHHHHH
Confidence 3478899999999999999999998 999999984 2234679999999999998763 222211 1122
Q ss_pred HHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 102 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+.+|.+-- .++| |||++-.|+.|+|.-.=+.++.
T Consensus 143 m~~f~EiE---tcie---------------cSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 143 MIAFAEIE---TCIE---------------CSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred HHHhHHHH---HHHh---------------hhhhhhhhhHhhhhhhhheeec
Confidence 34444432 4577 9999999999999876666554
No 185
>PRK12289 GTPase RsgA; Reviewed
Probab=98.64 E-value=1.5e-07 Score=89.42 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=64.6
Q ss_pred cccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
|.++.++|.+|+|+|++++. ++..+.+|+..+.. ..+|+|||+||+||.+. ++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---------------~~ip~ILVlNK~DLv~~-----------~~ 137 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---------------TGLEIVLCLNKADLVSP-----------TE 137 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---------------CCCCEEEEEEchhcCCh-----------HH
Confidence 45789999999999999876 66677899877643 23899999999999754 22
Q ss_pred HHHHH---HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 102 ARQWV---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 102 a~~~a---~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
...|. +..|+ .++. +||+++.|+++.++.+...
T Consensus 138 ~~~~~~~~~~~g~-~v~~---------------iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 138 QQQWQDRLQQWGY-QPLF---------------ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHHHhcCC-eEEE---------------EEcCCCCCHHHHhhhhccc
Confidence 23333 35565 5666 9999999998887776543
No 186
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.63 E-value=4.3e-08 Score=83.46 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=55.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
..+|++|+|+|.++..+......|. +... ..+|+++|+||+|+.....+.... ++..+..
T Consensus 90 ~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--------------~~~~~iiv~NK~Dl~~~~~~~~~~----~~~~~~l 149 (192)
T cd01889 90 QIIDLMLLVVDATKGIQTQTAECLV--IGEI--------------LCKKLIVVLNKIDLIPEEERERKI----EKMKKKL 149 (192)
T ss_pred hhCCEEEEEEECCCCccHHHHHHHH--HHHH--------------cCCCEEEEEECcccCCHHHHHHHH----HHHHHHH
Confidence 3568999999999866555443332 2221 127899999999987441111111 2222221
Q ss_pred -HHc---C--CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 107 -EKQ---G--LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 107 -~~~---g--l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
+.. + -.++++ +||++|.|+++.++.+...+.
T Consensus 150 ~~~~~~~~~~~~~vi~---------------iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 150 QKTLEKTRFKNSPIIP---------------VSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHhcCcCCCCEEE---------------EeccCCCCHHHHHHHHHhccc
Confidence 111 1 125566 999999999998888877653
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.62 E-value=4.5e-08 Score=93.25 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=70.4
Q ss_pred CcccccccccccC-CCCCCCcccccccCCcEEEEEEECCChhhHHH--HHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELN-GGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~-g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~--l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
+||++|....... ......++..++++||++|+|+|.++..+... +..|+ .+. ..|++|
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~---------------~~piil 112 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWL---RKS---------------GKPVIL 112 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HHh---------------CCCEEE
Confidence 5777774321100 01122445678999999999999998655544 23443 321 278999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+||+|+.... . ...+ ..++|+..+++ +||++|.|+++.++.+.+.+
T Consensus 113 VvNK~D~~~~~--~--------~~~~-~~~lg~~~~~~---------------vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 113 VANKIDGKKED--A--------VAAE-FYSLGFGEPIP---------------ISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred EEECccCCccc--c--------cHHH-HHhcCCCCeEE---------------EeCCcCCChHHHHHHHHHhc
Confidence 99999987541 1 1222 34567767888 99999999999998887665
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.62 E-value=4.1e-08 Score=100.40 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=72.0
Q ss_pred Ccccccccccc--cCCCCCCCccc--ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKE--LNGGPPTGQVR--VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~--~~g~~~~gq~r--~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
|||++|...+. ..|...+...+ .+++.+|++|+|+|.++..+++.+. ++..+... .+|+|
T Consensus 502 liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~---------------~~piI 565 (712)
T PRK09518 502 FIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA---------------GRALV 565 (712)
T ss_pred EEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc---------------CCCEE
Confidence 68888743221 11222222222 3578999999999999999998875 44455442 28999
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHH-HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAAR-QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~-~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
||+||+||.+.. . . +... .+...+....+ .++.+ +||++|.||+++|+.+.+.+.+
T Consensus 566 iV~NK~DL~~~~--~--~----~~~~~~~~~~l~~~~~---~~ii~---------iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 566 LVFNKWDLMDEF--R--R----QRLERLWKTEFDRVTW---ARRVN---------LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEEEchhcCChh--H--H----HHHHHHHHHhccCCCC---CCEEE---------EECCCCCCHHHHHHHHHHHHHH
Confidence 999999997541 1 0 1111 22222211111 12222 9999999999999998886643
No 189
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.62 E-value=1.1e-07 Score=95.69 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=64.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+.. ....+++.+|++|||+|.++. ++++.+ ..+.. .++|++|
T Consensus 139 ~iDTPGhe~F~~-------~r~rga~~aDiaILVVda~dgv~~qT~e~i----~~~~~---------------~~vPiIV 192 (587)
T TIGR00487 139 FLDTPGHEAFTS-------MRARGAKVTDIVVLVVAADDGVMPQTIEAI----SHAKA---------------ANVPIIV 192 (587)
T ss_pred EEECCCCcchhh-------HHHhhhccCCEEEEEEECCCCCCHhHHHHH----HHHHH---------------cCCCEEE
Confidence 777777764431 223478899999999999874 444432 12221 2389999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCC--eeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP--SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~--~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
++||+|+... .. ++..+.+++.++.. |-.++++++ +||++|.|+++.|+.+..
T Consensus 193 viNKiDl~~~-----~~----e~v~~~L~~~g~~~~~~~~~~~~v~---------iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 193 AINKIDKPEA-----NP----DRVKQELSEYGLVPEDWGGDTIFVP---------VSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECcccccC-----CH----HHHHHHHHHhhhhHHhcCCCceEEE---------EECCCCCChHHHHHhhhh
Confidence 9999998643 11 33444444444210 001123333 999999999999988864
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.60 E-value=7.8e-08 Score=96.49 Aligned_cols=106 Identities=17% Similarity=0.077 Sum_probs=71.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-ii 77 (255)
|||.+|++.+- ..+..++.++|++|||+|.++ ..+++.+. + +.. ..+| +|
T Consensus 54 ~iDtPGhe~f~-------~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~-i---l~~---------------lgi~~iI 107 (581)
T TIGR00475 54 FIDVPGHEKFI-------SNAIAGGGGIDAALLVVDADEGVMTQTGEHLA-V---LDL---------------LGIPHTI 107 (581)
T ss_pred EEECCCHHHHH-------HHHHhhhccCCEEEEEEECCCCCcHHHHHHHH-H---HHH---------------cCCCeEE
Confidence 67777766432 123457889999999999998 56666653 2 222 1267 99
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC---CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL---LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl---~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
||+||+|+.+. ..+. .+.+++.++++..++ .++++ +||++|.|+++.+..+...+-
T Consensus 108 VVlNK~Dlv~~--~~~~--~~~~ei~~~l~~~~~~~~~~ii~---------------vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 108 VVITKADRVNE--EEIK--RTEMFMKQILNSYIFLKNAKIFK---------------TSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred EEEECCCCCCH--HHHH--HHHHHHHHHHHHhCCCCCCcEEE---------------EeCCCCCCchhHHHHHHHHHH
Confidence 99999999765 2211 122456666666543 25555 999999999999887765543
No 191
>PRK00098 GTPase RsgA; Reviewed
Probab=98.59 E-value=1.5e-07 Score=86.95 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=64.7
Q ss_pred cccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
+++....++|++|+|+|++++.++..+ .+|+..+... ++|++||+||+||... ... .
T Consensus 73 ~~q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~---------------~ip~iIVlNK~DL~~~--~~~-----~ 130 (298)
T PRK00098 73 KSKLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN---------------GIKPIIVLNKIDLLDD--LEE-----A 130 (298)
T ss_pred cccceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEEhHHcCCC--HHH-----H
Confidence 344456899999999999998876654 6888776542 3899999999999633 110 1
Q ss_pred HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 100 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
++..++.++.+. +++. +||+++.|+++.++.+.
T Consensus 131 ~~~~~~~~~~g~-~v~~---------------vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 131 RELLALYRAIGY-DVLE---------------LSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHHHHCCC-eEEE---------------EeCCCCccHHHHHhhcc
Confidence 234445556665 6777 99999988887776653
No 192
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.57 E-value=1.7e-07 Score=88.73 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=65.4
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
+..|+++++++|+|+|+++.. ..|..++.+.. .+.|++||+||+||... .+....+.+.
T Consensus 57 l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-------------~~~piilV~NK~DLl~k---~~~~~~~~~~ 115 (360)
T TIGR03597 57 LNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-------------GGNPVLLVGNKIDLLPK---SVNLSKIKEW 115 (360)
T ss_pred HhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-------------CCCCEEEEEEchhhCCC---CCCHHHHHHH
Confidence 346888999999999997655 35777777641 13789999999999754 2333122233
Q ss_pred HHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 102 ARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 102 a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
..+++++.++. .+++ +||++|.|+++.|+.+.+
T Consensus 116 l~~~~k~~g~~~~~i~~---------------vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 116 MKKRAKELGLKPVDIIL---------------VSAKKGNGIDELLDKIKK 150 (360)
T ss_pred HHHHHHHcCCCcCcEEE---------------ecCCCCCCHHHHHHHHHH
Confidence 33456677752 4677 999999999999888754
No 193
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=2.4e-07 Score=78.53 Aligned_cols=103 Identities=17% Similarity=0.034 Sum_probs=69.5
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
-.|.||.+.+++|+|.|.+|++........+.-+.+. ++.....++|++||.|..... ..++ -+..
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E-----------~eLq~a~llv~anKqD~~~~~--t~~E-~~~~ 143 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQE-----------EELQHAKLLVFANKQDYSGAL--TRSE-VLKM 143 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhcc-----------HhhcCceEEEEeccccchhhh--hHHH-HHHH
Confidence 3578999999999999999999887777655555542 223347799999999987651 1110 0000
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
-..+-.++.- ...++ +||.+|+|++++++|+.+.+-.
T Consensus 144 L~l~~Lk~r~-~~Iv~---------------tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 144 LGLQKLKDRI-WQIVK---------------TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hChHHHhhhe-eEEEe---------------eccccccCCcHHHHHHHHHHhc
Confidence 0111111112 25667 9999999999999999987754
No 194
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.53 E-value=2.1e-07 Score=85.51 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=66.3
Q ss_pred ccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
.+..+.++|.+|+|+|++++. ++..+.+|+..+... ++|++||+||+||.+. .. . .
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---------------~ip~iIVlNK~DL~~~--~~--~----~ 128 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---------------GIEPVIVLTKADLLDD--EE--E----E 128 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---------------CCCEEEEEEHHHCCCh--HH--H----H
Confidence 445789999999999999998 999999999877652 3899999999999754 11 0 1
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
....+..+.+. +++. +||+++.|+++.+..+.
T Consensus 129 ~~~~~~~~~g~-~v~~---------------vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 129 LELVEALALGY-PVLA---------------VSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHHHhCCC-eEEE---------------EECCCCccHHHHHhhhc
Confidence 22333445564 6777 99999999877766654
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.53 E-value=8.6e-08 Score=91.73 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=61.6
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.+++.+|++|+|+|.++..+.+... ++..+.+. ..|+|||+||+|+.+. .. . .+...
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---------------~~~~ivv~NK~Dl~~~--~~--~---~~~~~ 307 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALEA---------------GRALVIVVNKWDLVDE--KT--M---EEFKK 307 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---------------CCcEEEEEECccCCCH--HH--H---HHHHH
Confidence 3688999999999999998887754 34444432 2789999999999743 11 0 01122
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
++.+.+. +...+|+.+ +||++|.|+++.|+.+.+...
T Consensus 308 ~~~~~l~---~~~~~~i~~---------~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 308 ELRRRLP---FLDYAPIVF---------ISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred HHHHhcc---cccCCCEEE---------EeCCCCCCHHHHHHHHHHHHH
Confidence 2222221 112233444 999999999999988876543
No 196
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.52 E-value=1.7e-07 Score=81.56 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred cccccccCC-cEEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 21 QVRVLVVGD-SGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 21 q~r~Yyr~a-dgvIlVyDvT~~-~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+...||+++ +++|||+|.++. +++..+..|+.++....... ...+|++||+||+|+...
T Consensus 64 ~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~---------~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 64 KLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKV---------KNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhc---------cCCCCEEEEecchhhccc
Confidence 345689998 999999999998 78999988888876531110 135999999999999755
No 197
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.49 E-value=2.2e-07 Score=95.68 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=64.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+. .....+++.+|++|||+|.++. .+++.+.. +.. ..+|+||
T Consensus 299 fiDTPGhe~F~-------~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~----~k~---------------~~iPiIV 352 (742)
T CHL00189 299 FLDTPGHEAFS-------SMRSRGANVTDIAILIIAADDGVKPQTIEAINY----IQA---------------ANVPIIV 352 (742)
T ss_pred EEECCcHHHHH-------HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHH----HHh---------------cCceEEE
Confidence 67777665332 1233588999999999999884 45544322 221 2389999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHH-------HHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWV-------EKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a-------~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+||+|+.... . ++..+.. +.++ ..++++ +||++|.|++++++.+...
T Consensus 353 ViNKiDl~~~~-----~----e~v~~eL~~~~ll~e~~g~~vpvv~---------------VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 353 AINKIDKANAN-----T----ERIKQQLAKYNLIPEKWGGDTPMIP---------------ISASQGTNIDKLLETILLL 408 (742)
T ss_pred EEECCCccccC-----H----HHHHHHHHHhccchHhhCCCceEEE---------------EECCCCCCHHHHHHhhhhh
Confidence 99999987531 1 2222222 2222 224555 9999999999999888764
No 198
>PRK12288 GTPase RsgA; Reviewed
Probab=98.48 E-value=4.8e-07 Score=85.70 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=65.4
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
..-++|++++||+++...+|..+..|+..+.. ..+|++||+||+||.+...+. ...+..+
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---------------~~i~~VIVlNK~DL~~~~~~~-----~~~~~~~ 176 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---------------LGIEPLIVLNKIDLLDDEGRA-----FVNEQLD 176 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---------------cCCCEEEEEECccCCCcHHHH-----HHHHHHH
Confidence 34569999999999999999999999875543 238899999999997541100 0122223
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
..++.+. ++++ +||+++.|+++.++.+...
T Consensus 177 ~y~~~g~-~v~~---------------vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 177 IYRNIGY-RVLM---------------VSSHTGEGLEELEAALTGR 206 (347)
T ss_pred HHHhCCC-eEEE---------------EeCCCCcCHHHHHHHHhhC
Confidence 3445665 6777 9999999998888777653
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.47 E-value=1.9e-07 Score=89.71 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=62.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+- ..+...++++|++|||+|.++..++.....|.-.+.... + ..+++||+|
T Consensus 88 liDtpG~~~~~-------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~------------~-~~~iivviN 147 (425)
T PRK12317 88 IVDCPGHRDFV-------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL------------G-INQLIVAIN 147 (425)
T ss_pred EEECCCcccch-------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc------------C-CCeEEEEEE
Confidence 67777765332 122334678999999999997433322222222222310 1 136999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 144 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f 144 (255)
|+|+.... .-....+.++..++.+..++.. +.+++++ +||++|.|+++..
T Consensus 148 K~Dl~~~~--~~~~~~~~~~i~~~l~~~g~~~--~~~~ii~---------iSA~~g~gi~~~~ 197 (425)
T PRK12317 148 KMDAVNYD--EKRYEEVKEEVSKLLKMVGYKP--DDIPFIP---------VSAFEGDNVVKKS 197 (425)
T ss_pred cccccccc--HHHHHHHHHHHHHHHHhhCCCc--CcceEEE---------eecccCCCccccc
Confidence 99997531 1001112355667777666410 1123333 9999999998754
No 200
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.46 E-value=4.2e-07 Score=94.19 Aligned_cols=101 Identities=18% Similarity=0.087 Sum_probs=62.8
Q ss_pred CcccccccccccCCCCCCCccc-ccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKELNGGPPTGQVR-VLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r-~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
|||++|++.+ ..++ .+++.+|++|||||.++ ..+++.+. .+. ...+|+|
T Consensus 341 fiDTPGhe~F--------~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a~---------------~~~vPiI 393 (787)
T PRK05306 341 FLDTPGHEAF--------TAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HAK---------------AAGVPII 393 (787)
T ss_pred EEECCCCccc--------hhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HHH---------------hcCCcEE
Confidence 6777776633 2233 47888999999999998 44544431 122 1238999
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHH---HHHHHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAAR---QWVEKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~---~~a~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
||+||+|+....... +..+.. .+++.++ ..++++ +||++|.||++.|+.+..
T Consensus 394 VviNKiDl~~a~~e~-----V~~eL~~~~~~~e~~g~~vp~vp---------------vSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 394 VAINKIDKPGANPDR-----VKQELSEYGLVPEEWGGDTIFVP---------------VSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEECccccccCHHH-----HHHHHHHhcccHHHhCCCceEEE---------------EeCCCCCCchHHHHhhhh
Confidence 999999996431001 111111 1122222 124555 999999999999988875
No 201
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.46 E-value=2.9e-07 Score=77.46 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=57.6
Q ss_pred cccccCC---cEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 23 RVLVVGD---SGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 23 r~Yyr~a---dgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
..|++.+ +++++|+|.++..+... .++.+... ...+|+++|+||+|+.....++. +.
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~--------------~~~~~~iiv~nK~Dl~~~~~~~~----~~ 157 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLK--------------EYGIPVLIVLTKADKLKKGERKK----QL 157 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHH--------------HcCCcEEEEEECcccCCHHHHHH----HH
Confidence 3466655 57888999888665543 22222222 12378999999999875411111 11
Q ss_pred HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 100 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+.+.++...... .+++ +||+++.|+++.++.+.+.+
T Consensus 158 ~~i~~~l~~~~~-~~~~---------------~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 158 KKVRKALKFGDD-EVIL---------------FSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHHHHHHhcCC-ceEE---------------EEcCCCCCHHHHHHHHHHHh
Confidence 223334433332 6667 99999999999988877655
No 202
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.46 E-value=3.7e-07 Score=91.98 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=42.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+.. ....+++.+|++|||||+++ +.+++.+..+ .. ..+|++|
T Consensus 73 ~iDTpG~e~f~~-------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---------------~~vpiIV 126 (590)
T TIGR00491 73 FIDTPGHEAFTN-------LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---------------YKTPFVV 126 (590)
T ss_pred EEECCCcHhHHH-------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---------------cCCCEEE
Confidence 677777664331 23348899999999999997 6677665422 22 1389999
Q ss_pred EEeCCCCCC
Q 025248 79 IGNKADVAA 87 (255)
Q Consensus 79 VGNK~DL~~ 87 (255)
|+||+|+..
T Consensus 127 v~NK~Dl~~ 135 (590)
T TIGR00491 127 AANKIDRIP 135 (590)
T ss_pred EEECCCccc
Confidence 999999964
No 203
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.41 E-value=2e-07 Score=78.55 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=52.6
Q ss_pred ccccC---CcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 24 VLVVG---DSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 24 ~Yyr~---adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
.|++. ++++|+|+|.+++-+..... ++..+.. ..+|+++|+||+|+....... ...+
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---------------~~~pviiv~nK~D~~~~~~~~----~~~~ 152 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---------------RGIPVLIVLTKADKLKKSELN----KQLK 152 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---------------cCCCEEEEEECcccCCHHHHH----HHHH
Confidence 46664 57999999999877766653 2233332 238899999999987541111 1124
Q ss_pred HHHHHHHHcCC-CCeeecCCCCCCCCCCCCcceeeecCCCHH
Q 025248 101 AARQWVEKQGL-LPSSEELPLTESFPGGGGLIAAAKEARYDK 141 (255)
Q Consensus 101 ~a~~~a~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~ 141 (255)
+.+++....+. ..+++ +||++|+|++
T Consensus 153 ~i~~~l~~~~~~~~v~~---------------~Sa~~g~gi~ 179 (179)
T TIGR03598 153 KIKKALKKDADDPSVQL---------------FSSLKKTGID 179 (179)
T ss_pred HHHHHHhhccCCCceEE---------------EECCCCCCCC
Confidence 44455554432 15666 9999998873
No 204
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.39 E-value=1.2e-06 Score=72.11 Aligned_cols=90 Identities=24% Similarity=0.211 Sum_probs=57.3
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
.+.+.+++|++|+|+|.+++.+.... .+...+.. ...|+++|.||+|+.... . . ..
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~---------------~~~p~iiv~NK~Dl~~~~--~-----~-~~ 61 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE---------------LGKKLLIVLNKADLVPKE--V-----L-EK 61 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh---------------CCCcEEEEEEhHHhCCHH--H-----H-HH
Confidence 34578899999999999886543321 22222221 237999999999986431 1 0 11
Q ss_pred HHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 102 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
...+.+..+. +++. +||+++.|+++.++.+.+.+
T Consensus 62 ~~~~~~~~~~-~~~~---------------iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 62 WKSIKESEGI-PVVY---------------VSAKERLGTKILRRTIKELA 95 (156)
T ss_pred HHHHHHhCCC-cEEE---------------EEccccccHHHHHHHHHHHH
Confidence 1123333343 5666 99999999988887776654
No 205
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.38 E-value=1e-06 Score=68.29 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=42.7
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
..|+++++++++|||+++++|++.+ |+..+.... ..++|++++|||.|+...
T Consensus 41 ~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~------------k~dl~~~~~~nk~dl~~~ 92 (124)
T smart00010 41 PTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN------------KSDLPILVGGNRDVLEEE 92 (124)
T ss_pred ccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC------------CCCCcEEEEeechhhHhh
Confidence 4689999999999999999999887 988876521 234889999999998543
No 206
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.35 E-value=2.9e-07 Score=77.88 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=74.0
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
+-...||.+.|++|+|.|.+|+.-|+.+...+.|+.+... ...+|+++.+||.|+...
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeK-----------l~~vpvlIfankQdllta----------- 134 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEK-----------LAEVPVLIFANKQDLLTA----------- 134 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhh-----------hhccceeehhhhhHHHhh-----------
Confidence 3456899999999999999999999999988888877332 345999999999998755
Q ss_pred HHHHHHHHHcCCCCeee-cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 100 DAARQWVEKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~E-e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
..+.+.+.+.++...-. .+.+.+ |||.++.++....+++..
T Consensus 135 a~~eeia~klnl~~lrdRswhIq~---------csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 135 AKVEEIALKLNLAGLRDRSWHIQE---------CSALSLEGSTDGSDWVQS 176 (185)
T ss_pred cchHHHHHhcchhhhhhceEEeee---------CccccccCccCcchhhhc
Confidence 33556666666521111 233444 999999988888877653
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.34 E-value=6.6e-07 Score=77.77 Aligned_cols=103 Identities=13% Similarity=0.041 Sum_probs=60.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. +.+..+++.+|++|+|+|.++...-+. ......+... + ..++|+|.|
T Consensus 81 liDTpG~~~~~-------~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-------------~-~~~iIvviN 138 (208)
T cd04166 81 IADTPGHEQYT-------RNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-------------G-IRHVVVAVN 138 (208)
T ss_pred EEECCcHHHHH-------HHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-------------C-CCcEEEEEE
Confidence 56666654321 234456889999999999987632222 1222222221 1 134788999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEA 143 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~ 143 (255)
|+|+.... .-....+.++..++.+++++. +++. +||++|.|+++.
T Consensus 139 K~D~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ii~---------------iSA~~g~ni~~~ 185 (208)
T cd04166 139 KMDLVDYS--EEVFEEIVADYLAFAAKLGIEDITFIP---------------ISALDGDNVVSR 185 (208)
T ss_pred chhcccCC--HHHHHHHHHHHHHHHHHcCCCCceEEE---------------EeCCCCCCCccC
Confidence 99987431 111112335566777777752 3556 999999998743
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.30 E-value=6.6e-07 Score=85.90 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=54.2
Q ss_pred cccCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 25 LVVGDSGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~----~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
+...+|++|||+|.++. .+.+.+. .+... + -.+++||+||+|+.+.+...... +
T Consensus 100 g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~~~-------------g-i~~iIVvvNK~Dl~~~~~~~~~~----~ 157 (406)
T TIGR03680 100 GAALMDGALLVIAANEPCPQPQTKEHLM----ALEII-------------G-IKNIVIVQNKIDLVSKEKALENY----E 157 (406)
T ss_pred HHHHCCEEEEEEECCCCccccchHHHHH----HHHHc-------------C-CCeEEEEEEccccCCHHHHHHHH----H
Confidence 45567999999999963 3444433 22221 1 13589999999997541100011 3
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+..++.+... .+.+++++ +||++|.|++++++.|...+
T Consensus 158 ~i~~~l~~~~----~~~~~ii~---------vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 158 EIKEFVKGTV----AENAPIIP---------VSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHhhhhhcc----cCCCeEEE---------EECCCCCChHHHHHHHHHhC
Confidence 3333433321 11233333 99999999988888877654
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.28 E-value=2.1e-06 Score=86.42 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=41.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+.. ....+++.+|++|||+|.++ ..+++.+..+ .. ..+|++|
T Consensus 75 ~iDTPG~e~f~~-------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~---------------~~vpiIv 128 (586)
T PRK04004 75 FIDTPGHEAFTN-------LRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR---------------RKTPFVV 128 (586)
T ss_pred EEECCChHHHHH-------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH---------------cCCCEEE
Confidence 566666654321 22346788999999999998 7777766432 22 1389999
Q ss_pred EEeCCCCC
Q 025248 79 IGNKADVA 86 (255)
Q Consensus 79 VGNK~DL~ 86 (255)
|+||+|+.
T Consensus 129 viNK~D~~ 136 (586)
T PRK04004 129 AANKIDRI 136 (586)
T ss_pred EEECcCCc
Confidence 99999985
No 210
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.28 E-value=1.3e-06 Score=88.19 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=64.5
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
+.+..+++.+|++|||+|.++. -+.....|+..+... .+|+|||+||+|+... +. ..+.
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---------------~ip~IVviNKiD~~~a--~~---~~v~ 137 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---------------GLKPIVVINKIDRPSA--RP---DEVV 137 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---------------CCCEEEEEECCCCCCc--CH---HHHH
Confidence 3567789999999999999874 345556777776653 2889999999998654 21 1122
Q ss_pred HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCC----------CHHHHHHHHHHHH
Q 025248 100 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR----------YDKEAVMKFFRML 151 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~----------nv~e~f~~l~~~l 151 (255)
++..++....+...-...+|+.. +||++|. +++..|+.+++.+
T Consensus 138 ~ei~~l~~~~g~~~e~l~~pvl~---------~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 138 DEVFDLFAELGADDEQLDFPIVY---------ASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred HHHHHHHHhhccccccccCcEEe---------chhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 44444444333210001244444 9999996 5666666665554
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.28 E-value=1.2e-06 Score=88.54 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=66.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-ii 77 (255)
|||.+|++.+. ..+-..+.++|++|||+|.++ +.+++.+. + +... .+| +|
T Consensus 55 ~IDtPGhe~fi-------~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~-i---l~~l---------------gi~~iI 108 (614)
T PRK10512 55 FIDVPGHEKFL-------SNMLAGVGGIDHALLVVACDDGVMAQTREHLA-I---LQLT---------------GNPMLT 108 (614)
T ss_pred EEECCCHHHHH-------HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH-H---HHHc---------------CCCeEE
Confidence 56666654332 233456789999999999987 55655542 2 2221 145 57
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
||.||+|+.+.. .+. .+.++..++.+..++ .+++. +||++|.|+++.++.+....
T Consensus 109 VVlNKiDlv~~~--~~~--~v~~ei~~~l~~~~~~~~~ii~---------------VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 109 VALTKADRVDEA--RIA--EVRRQVKAVLREYGFAEAKLFV---------------TAATEGRGIDALREHLLQLP 165 (614)
T ss_pred EEEECCccCCHH--HHH--HHHHHHHHHHHhcCCCCCcEEE---------------EeCCCCCCCHHHHHHHHHhh
Confidence 999999997541 111 122445556655553 24555 99999999999888887644
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.26 E-value=1.2e-06 Score=84.37 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=54.8
Q ss_pred ccccC---CcEEEEEEECCC----hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCc
Q 025248 24 VLVVG---DSGVIFVHDLSQ----RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSG 96 (255)
Q Consensus 24 ~Yyr~---adgvIlVyDvT~----~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~ 96 (255)
.|+++ +|++|+|+|.++ ..+++.+..| ... + -.+++||+||+|+.+.+ ...
T Consensus 101 ~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l----~~~-------------~-i~~iiVVlNK~Dl~~~~--~~~-- 158 (411)
T PRK04000 101 TMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL----DII-------------G-IKNIVIVQNKIDLVSKE--RAL-- 158 (411)
T ss_pred HHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-------------C-CCcEEEEEEeeccccch--hHH--
Confidence 45665 599999999995 4455544322 221 1 13589999999997542 110
Q ss_pred cHHHHHHHHHHHcC--CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 97 NLVDAARQWVEKQG--LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 97 ~l~e~a~~~a~~~g--l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
...++..++++... -.++++ +||++|.|+++.++.|...+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~---------------vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIP---------------VSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEE---------------EECCCCcCHHHHHHHHHHhC
Confidence 00133444443321 124555 99999999988888777654
No 213
>PRK10218 GTP-binding protein; Provisional
Probab=98.24 E-value=2.4e-06 Score=86.42 Aligned_cols=101 Identities=14% Similarity=0.076 Sum_probs=62.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+..+ .+.+..|++.+|++|||+|.++....+. ..++..+... .+|+|||.|
T Consensus 72 liDTPG~~df-------~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~---------------gip~IVviN 128 (607)
T PRK10218 72 IVDTPGHADF-------GGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY---------------GLKPIVVIN 128 (607)
T ss_pred EEECCCcchh-------HHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc---------------CCCEEEEEE
Confidence 4555555422 2456779999999999999988643333 3333444432 278999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 139 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n 139 (255)
|+|+... +. ..+.++..++....+......++|++. +||++|.+
T Consensus 129 KiD~~~a--~~---~~vl~ei~~l~~~l~~~~~~~~~PVi~---------~SA~~G~~ 172 (607)
T PRK10218 129 KVDRPGA--RP---DWVVDQVFDLFVNLDATDEQLDFPIVY---------ASALNGIA 172 (607)
T ss_pred CcCCCCC--ch---hHHHHHHHHHHhccCccccccCCCEEE---------eEhhcCcc
Confidence 9998754 21 122344444443333322112577777 99999974
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.23 E-value=1.2e-06 Score=76.88 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=50.2
Q ss_pred cccCCcEEEEEEECCChh-------hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCcc
Q 025248 25 LVVGDSGVIFVHDLSQRR-------TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 97 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~-------Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~ 97 (255)
.++.+|++|+|.|.++.. ..+....|. .+... ...|+|||.||+|+............
T Consensus 97 ~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (219)
T cd01883 97 GASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--------------GVKQLIVAVNKMDDVTVNWSEERYDE 161 (219)
T ss_pred HhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--------------CCCeEEEEEEccccccccccHHHHHH
Confidence 456799999999999852 112222232 22221 11579999999999732000111112
Q ss_pred HHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHH
Q 025248 98 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 141 (255)
Q Consensus 98 l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~ 141 (255)
+.++...+.+..++.. ..+++++ +||++|.|++
T Consensus 162 i~~~l~~~l~~~~~~~--~~~~ii~---------iSA~tg~gi~ 194 (219)
T cd01883 162 IKKELSPFLKKVGYNP--KDVPFIP---------ISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHcCCCc--CCceEEE---------eecCcCCCCC
Confidence 3344444555555410 1233334 9999999976
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.23 E-value=1.4e-06 Score=75.81 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=38.7
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
.+..+++.+|++|+|+|.++..++.. ..|+..+... .+|+++|+||+|+.
T Consensus 87 ~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~---------------~~p~iiviNK~D~~ 136 (213)
T cd04167 87 EVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE---------------GLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEEEECcccC
Confidence 45568999999999999998887754 4555554431 28999999999986
No 216
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.22 E-value=1.9e-06 Score=76.81 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=52.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. +.+..+++.+|++|+|+|+++..+.+....|. .+.. ..+|+|||+|
T Consensus 77 iiDTPG~~~f~-------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~---------------~~~p~ilviN 133 (222)
T cd01885 77 LIDSPGHVDFS-------SEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK---------------ERVKPVLVIN 133 (222)
T ss_pred EECCCCccccH-------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH---------------cCCCEEEEEE
Confidence 45555555322 35667899999999999999987776533332 2222 1278999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQ 109 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~ 109 (255)
|+|+...+ +.++.++......++.++.
T Consensus 134 KiD~~~~e-~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 134 KIDRLILE-LKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCCcchhh-hcCCHHHHHHHHHHHHHHH
Confidence 99986332 4555433333344444443
No 217
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.20 E-value=3.9e-06 Score=87.02 Aligned_cols=84 Identities=17% Similarity=0.072 Sum_probs=64.2
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
..+|++|+|+|.++.+. ...|..++.+. .+|+++|.||+|+.++ +.+. ...+++.
T Consensus 84 ~~aD~vI~VvDat~ler---~l~l~~ql~e~---------------giPvIvVlNK~Dl~~~--~~i~-----id~~~L~ 138 (772)
T PRK09554 84 GDADLLINVVDASNLER---NLYLTLQLLEL---------------GIPCIVALNMLDIAEK--QNIR-----IDIDALS 138 (772)
T ss_pred cCCCEEEEEecCCcchh---hHHHHHHHHHc---------------CCCEEEEEEchhhhhc--cCcH-----HHHHHHH
Confidence 48999999999988543 34566666653 2899999999998755 3332 4567888
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+++|+ +++. +||+++.|+++..+.+.+..
T Consensus 139 ~~LG~-pVvp---------------iSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 139 ARLGC-PVIP---------------LVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HHhCC-CEEE---------------EEeecCCCHHHHHHHHHHhh
Confidence 88997 8888 99999999988877776543
No 218
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.14 E-value=7.9e-06 Score=87.00 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=41.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+.. ....++..+|++|||+|+++ +.+++.+. .+.. .++|++|
T Consensus 530 fiDTPGhe~F~~-------lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---------------~~iPiIV 583 (1049)
T PRK14845 530 FIDTPGHEAFTS-------LRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---------------YKTPFVV 583 (1049)
T ss_pred EEECCCcHHHHH-------HHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---------------cCCCEEE
Confidence 677777654421 12236788999999999997 66776654 2222 1279999
Q ss_pred EEeCCCCCC
Q 025248 79 IGNKADVAA 87 (255)
Q Consensus 79 VGNK~DL~~ 87 (255)
|+||+|+..
T Consensus 584 ViNKiDL~~ 592 (1049)
T PRK14845 584 AANKIDLIP 592 (1049)
T ss_pred EEECCCCcc
Confidence 999999964
No 219
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=6.7e-06 Score=81.83 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=72.6
Q ss_pred CCcccccccccc-----cCCCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025248 1 MFWKERERENKE-----LNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV 74 (255)
Q Consensus 1 ~~w~~~~~~~~~-----~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~i 74 (255)
|||++ |+. +. +-||--| |.+.--+.-++|+|||.|.+.----+.+..+...+.. +.
T Consensus 117 ify~~-~~~-ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----------------~L 178 (650)
T KOG0462|consen 117 IFYKD-GQS-YLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----------------GL 178 (650)
T ss_pred EEEEc-CCc-eEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----------------CC
Confidence 79998 443 43 3366655 3444457789999999999987655555544433332 26
Q ss_pred cEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 75 PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 75 PiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
-+|.|.||+|+...... ....++.+-+++. +.+- +|||+|.|+++.++.+++++
T Consensus 179 ~iIpVlNKIDlp~adpe--------~V~~q~~~lF~~~~~~~i~---------------vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 179 AIIPVLNKIDLPSADPE--------RVENQLFELFDIPPAEVIY---------------VSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eEEEeeeccCCCCCCHH--------HHHHHHHHHhcCCccceEE---------------EEeccCccHHHHHHHHHhhC
Confidence 69999999999877321 2223333434431 3344 99999999999888777665
No 220
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.10 E-value=9.4e-06 Score=64.92 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCcEEEEEEECCChhhH--HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTK--TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sf--e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
..+++++|+|.++..+. ..+.+|+... ..|+++|+||+|+.....+.. ........
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------------------~~~vi~v~nK~D~~~~~~~~~----~~~~~~~~ 138 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEEL------------------GIPFLVVLTKADKLKKSELAK----ALKEIKKE 138 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHc------------------CCCEEEEEEchhcCChHHHHH----HHHHHHHH
Confidence 35688999999876433 3344555332 278999999999864311110 11222222
Q ss_pred HH-HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 106 VE-KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 106 a~-~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
.+ .....+++. +||+++.+++++++.+.+.
T Consensus 139 l~~~~~~~~~~~---------------~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 139 LKLFEIDPPIIL---------------FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHhccCCCceEE---------------EecCCCCCHHHHHHHHHHh
Confidence 32 122235556 9999999999999888764
No 221
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.10 E-value=1.1e-05 Score=72.30 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=45.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+.. ..+.+..+++.+|++|+|+|.++.... ....|+..+... .+|+++|+|
T Consensus 68 liDTPG~~~-------f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---------------~~P~iivvN 124 (237)
T cd04168 68 LIDTPGHMD-------FIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---------------NIPTIIFVN 124 (237)
T ss_pred EEeCCCccc-------hHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---------------CCCEEEEEE
Confidence 466665542 224567799999999999999987654 334555555442 389999999
Q ss_pred CCCCCC
Q 025248 82 KADVAA 87 (255)
Q Consensus 82 K~DL~~ 87 (255)
|+|+..
T Consensus 125 K~D~~~ 130 (237)
T cd04168 125 KIDRAG 130 (237)
T ss_pred CccccC
Confidence 999875
No 222
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.04 E-value=3.2e-06 Score=69.06 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=53.5
Q ss_pred CcccccccCCcEEEEEEECCChhhHH--HHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCcc
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 97 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe--~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~ 97 (255)
+++......+|++|+|+|..++.+.. .+.+|+.+.. .+.|+++|.||+||..+ ..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~----------------~~k~~iivlNK~DL~~~--~~----- 59 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD----------------PRKKNILLLNKADLLTE--EQ----- 59 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc----------------CCCcEEEEEechhcCCH--HH-----
Confidence 34455678999999999999887655 4445554321 23789999999999644 11
Q ss_pred HHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC
Q 025248 98 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 139 (255)
Q Consensus 98 l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n 139 (255)
..+..++.++.+. .++. +||+++.+
T Consensus 60 -~~~~~~~~~~~~~-~ii~---------------iSa~~~~~ 84 (141)
T cd01857 60 -RKAWAEYFKKEGI-VVVF---------------FSALKENA 84 (141)
T ss_pred -HHHHHHHHHhcCC-eEEE---------------EEecCCCc
Confidence 1233445555554 6667 99998754
No 223
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.03 E-value=2.3e-05 Score=68.42 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=63.9
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
..+.+++.|+|++.|-+....| .....+..+.. ..++|++|..||.||.+. +. . ++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~--------------~~~ip~vVa~NK~DL~~a--~p--p----e~i 142 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS--------------RNPIPVVVAINKQDLFDA--LP--P----EKI 142 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh--------------ccCCCEEEEeeccccCCC--CC--H----HHH
Confidence 4689999999999999999999 44444444433 222999999999999976 22 2 444
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
+++.+... ..+|+++ ++|.++.++.+.++.+...
T Consensus 143 ~e~l~~~~-----~~~~vi~---------~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 143 REALKLEL-----LSVPVIE---------IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHHhcc-----CCCceee---------eecccchhHHHHHHHHHhh
Confidence 44444332 1344555 9999998888877776544
No 224
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.01 E-value=3.4e-05 Score=63.89 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=52.4
Q ss_pred cEEEEEEECCChhhHHHHHHHHH-HHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH--
Q 025248 30 SGVIFVHDLSQRRTKTSLQKWAV-EIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV-- 106 (255)
Q Consensus 30 dgvIlVyDvT~~~Sfe~l~~Wl~-ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a-- 106 (255)
|.+|+|.|..++.+... .|+. .... ..++|+|+|.||+||.+. ++..+|.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~--------------~~~~p~IiVlNK~Dl~~~-----------~~~~~~~~~ 53 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK--------------EKGKKLILVLNKADLVPK-----------EVLRKWLAY 53 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh--------------cCCCCEEEEEechhcCCH-----------HHHHHHHHH
Confidence 67999999998876653 3554 2222 234899999999999644 2222332
Q ss_pred -HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 107 -EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 107 -~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++......+. +||+++.++++..+.+...+
T Consensus 54 ~~~~~~~~ii~---------------vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 54 LRHSYPTIPFK---------------ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred HHhhCCceEEE---------------EeccCCcChhhHHHHHHHHh
Confidence 1111123455 99999999988888776654
No 225
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.96 E-value=1.7e-05 Score=67.49 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=59.8
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
...|++|+|.|.++.+ .-...+.++.+. .+|+|||.||+|+....+.. -....+.
T Consensus 77 ~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---------------g~P~vvvlN~~D~a~~~g~~-------id~~~Ls 131 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLE---RNLYLTLQLLEL---------------GIPVVVVLNKMDEAERKGIE-------IDAEKLS 131 (156)
T ss_dssp TSSSEEEEEEEGGGHH---HHHHHHHHHHHT---------------TSSEEEEEETHHHHHHTTEE-------E-HHHHH
T ss_pred cCCCEEEEECCCCCHH---HHHHHHHHHHHc---------------CCCEEEEEeCHHHHHHcCCE-------ECHHHHH
Confidence 5899999999998744 333445555653 28999999999998774322 2367888
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 147 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l 147 (255)
+.+|+ +.+. +||+++.|+++..+.+
T Consensus 132 ~~Lg~-pvi~---------------~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 132 ERLGV-PVIP---------------VSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHTS--EEE---------------EBTTTTBTHHHHHHHH
T ss_pred HHhCC-CEEE---------------EEeCCCcCHHHHHhhC
Confidence 88897 7888 9999999998887654
No 226
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.93 E-value=2.1e-05 Score=66.89 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=59.1
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH-
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR- 103 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~- 103 (255)
-.+.+|++|+|.|..+.-...... .+..+... ++|+|||.||+|+... +. ....++..
T Consensus 90 ~~~~~D~ailvVda~~g~~~~~~~-~l~~~~~~---------------~~p~ivvlNK~D~~~~--~~---~~~~~~~~~ 148 (188)
T PF00009_consen 90 GLRQADIAILVVDANDGIQPQTEE-HLKILREL---------------GIPIIVVLNKMDLIEK--EL---EEIIEEIKE 148 (188)
T ss_dssp HHTTSSEEEEEEETTTBSTHHHHH-HHHHHHHT---------------T-SEEEEEETCTSSHH--HH---HHHHHHHHH
T ss_pred eecccccceeeeeccccccccccc-cccccccc---------------ccceEEeeeeccchhh--hH---HHHHHHHHH
Confidence 467899999999999775544332 33334332 3889999999998732 11 11112222
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
.+.+..+.... +.+|++. +||++|.|+++.++.+.+.+
T Consensus 149 ~l~~~~~~~~~-~~~~vi~---------~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 149 KLLKEYGENGE-EIVPVIP---------ISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHTTSTTT-STEEEEE---------EBTTTTBTHHHHHHHHHHHS
T ss_pred HhccccccCcc-ccceEEE---------EecCCCCCHHHHHHHHHHhC
Confidence 44455543210 1244555 99999999988888777654
No 227
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.88 E-value=6.3e-05 Score=62.27 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=52.6
Q ss_pred ccCCcEEEEEEECCChhhH--HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTK--TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sf--e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
+.+||.+|+|.|..++..- ..+.+++... ....|+|+|.||+||.+. ++..
T Consensus 6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~----------------~~~~p~ilVlNKiDl~~~-----------~~~~ 58 (157)
T cd01858 6 IDSSDVVIQVLDARDPMGTRCKHVEEYLKKE----------------KPHKHLIFVLNKCDLVPT-----------WVTA 58 (157)
T ss_pred hhhCCEEEEEEECCCCccccCHHHHHHHHhc----------------cCCCCEEEEEEchhcCCH-----------HHHH
Confidence 6789999999999987432 2333333221 123799999999999654 2233
Q ss_pred HHHHHcCC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 104 QWVEKQGL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 104 ~~a~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
.|.+.+.- ..+. ++. +||+.+.|+++.++.+...
T Consensus 59 ~~~~~~~~~~~~~----~~~---------iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 59 RWVKILSKEYPTI----AFH---------ASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred HHHHHHhcCCcEE----EEE---------eeccccccHHHHHHHHHHH
Confidence 44443321 1111 112 8999999988777776543
No 228
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.87 E-value=1.3e-05 Score=78.26 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=64.2
Q ss_pred ccCCCCCC-CcccccccCCcEEEEEEECCChhhHHH-------HHHHHHHHHHhCCCCCCCCCCCCCCCCC-cEEEEEeC
Q 025248 12 ELNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTS-------LQKWAVEIATSGTFSAPLASGGPGGLPV-PYVVIGNK 82 (255)
Q Consensus 12 ~~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~-------l~~Wl~ei~~~~~~s~~~~s~~~~~~~i-PiiLVGNK 82 (255)
|..||..| +.+..+++.+|++|||+|.++ ..|+. ....+..+.. ..+ ++||+.||
T Consensus 91 DtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~---------------~gi~~iIV~vNK 154 (447)
T PLN00043 91 DAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT---------------LGVKQMICCCNK 154 (447)
T ss_pred ECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH---------------cCCCcEEEEEEc
Confidence 44455544 455667899999999999987 44432 2222222222 226 47889999
Q ss_pred CCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHH
Q 025248 83 ADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 142 (255)
Q Consensus 83 ~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e 142 (255)
+|+.+..-.......+.+++..++++.|+. .+.+++.+ +||++|.|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~--~~~~~~ip---------iSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYN--PDKIPFVP---------ISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCC--cccceEEE---------Eeccccccccc
Confidence 998632101122334557788888888852 12244444 99999999854
No 229
>PRK13796 GTPase YqeH; Provisional
Probab=97.83 E-value=8.4e-05 Score=70.70 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=57.8
Q ss_pred cCCc-EEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 27 VGDS-GVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 27 r~ad-gvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
..++ .+++|.|+.|.. ..|..++.+.. .+.|++||+||+||.+. .+....+.+....+
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-------------~~kpviLViNK~DLl~~---~~~~~~i~~~l~~~ 125 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-------------GNNPVLLVGNKADLLPK---SVKKNKVKNWLRQE 125 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHh-------------CCCCEEEEEEchhhCCC---ccCHHHHHHHHHHH
Confidence 3455 788999998743 35666766631 13689999999999753 23331112223344
Q ss_pred HHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 106 VEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 106 a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
+++.|+. .++. +||+++.|+++.++.+.+.
T Consensus 126 ~k~~g~~~~~v~~---------------vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 126 AKELGLRPVDVVL---------------ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHhcCCCcCcEEE---------------EECCCCCCHHHHHHHHHHh
Confidence 6666652 4566 9999999999998888553
No 230
>PRK13351 elongation factor G; Reviewed
Probab=97.78 E-value=5e-05 Score=77.47 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=47.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+..+ .+.+..+++.+|++|+|+|.++..+++....|. .+.. ..+|++||+|
T Consensus 77 liDtPG~~df-------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~---------------~~~p~iiviN 133 (687)
T PRK13351 77 LIDTPGHIDF-------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR---------------YGIPRLIFIN 133 (687)
T ss_pred EEECCCcHHH-------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh---------------cCCCEEEEEE
Confidence 5666665422 235677999999999999999988887766663 3333 2389999999
Q ss_pred CCCCCCC
Q 025248 82 KADVAAK 88 (255)
Q Consensus 82 K~DL~~~ 88 (255)
|+|+...
T Consensus 134 K~D~~~~ 140 (687)
T PRK13351 134 KMDRVGA 140 (687)
T ss_pred CCCCCCC
Confidence 9998754
No 231
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.74 E-value=9.5e-05 Score=68.96 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=70.9
Q ss_pred cccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCC
Q 025248 21 QVRVLVVGDSGVIFVHDLSQR----------RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 90 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~----------~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~ 90 (255)
....||.+++++|||.|+++- ..++.....++.+.++. .-.++|++|++||.|+-.+.-
T Consensus 177 kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~-----------~~~~~pill~~NK~D~f~~ki 245 (317)
T cd00066 177 KWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR-----------WFANTSIILFLNKKDLFEEKI 245 (317)
T ss_pred hHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc-----------cccCCCEEEEccChHHHHHhh
Confidence 345799999999999999984 56777667777777632 234599999999999754321
Q ss_pred Cc--c-------CC-ccHHHHHHHHHHHc-C-CCCe-eecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 91 TR--G-------SS-GNLVDAARQWVEKQ-G-LLPS-SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 91 r~--V-------s~-~~l~e~a~~~a~~~-g-l~~~-~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
.. + .. ++-.+.+..|..+. . +..- -..+.... |+|.+..+++.+|+.+...|+++.
T Consensus 246 ~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~---------t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 246 KKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHF---------TCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred cCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEe---------ccccchHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 11124444444321 1 0000 00111111 889999899999988888887754
No 232
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.72 E-value=0.00018 Score=62.79 Aligned_cols=82 Identities=17% Similarity=0.041 Sum_probs=52.9
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHH
Q 025248 29 DSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK 108 (255)
Q Consensus 29 adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~ 108 (255)
++++|.|+|+++.++... ++..++. ..=++|.||+|+.+.. .-.. +...+.++.
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi~------------------~ad~~~~~k~d~~~~~--~~~~----~~~~~~~~~ 166 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGIT------------------RSDLLVINKIDLAPMV--GADL----GVMERDAKK 166 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHhh------------------hccEEEEEhhhccccc--cccH----HHHHHHHHH
Confidence 788999999998776422 1111211 1128999999998531 1111 333444444
Q ss_pred c-CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 109 Q-GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 109 ~-gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
. ...++++ +|||+|.|+++.|+++.+.+
T Consensus 167 ~~~~~~i~~---------------~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 167 MRGEKPFIF---------------TNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred hCCCCCEEE---------------EECCCCCCHHHHHHHHHhhc
Confidence 2 2247777 99999999999999888654
No 233
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.71 E-value=0.00017 Score=68.04 Aligned_cols=87 Identities=21% Similarity=0.190 Sum_probs=63.5
Q ss_pred cCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 27 VGDSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 27 r~adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.-|.+++||.|++.. .-++.++....|+..+. .+...-|.+||+||+|+.+.+. +-..
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye----------k~L~~rp~liVaNKiD~~eae~---------~~l~ 333 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE----------KGLADRPALIVANKIDLPEAEK---------NLLS 333 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh----------hhhccCceEEEEeccCchhHHH---------HHHH
Confidence 357789999999999 88888888888887752 2344578999999999964310 2236
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 147 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l 147 (255)
++++...-...+. +||++++++++.++-+
T Consensus 334 ~L~~~lq~~~V~p---------------vsA~~~egl~~ll~~l 362 (366)
T KOG1489|consen 334 SLAKRLQNPHVVP---------------VSAKSGEGLEELLNGL 362 (366)
T ss_pred HHHHHcCCCcEEE---------------eeeccccchHHHHHHH
Confidence 7777765323567 9999998877666544
No 234
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.70 E-value=9.1e-05 Score=62.37 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=54.6
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
+.....+||.+|+|+|.+++..-... .++..+ .+.|+++|.||+||.+. +.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----------------~~k~~ilVlNK~Dl~~~-----------~~ 63 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----------------GNKPRIIVLNKADLADP-----------KK 63 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----------------cCCCEEEEEehhhcCCh-----------HH
Confidence 44567899999999999876543221 121111 12689999999999643 11
Q ss_pred HHHHH---HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 102 ARQWV---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 102 a~~~a---~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
...|. +..+ ..++. +||+++.++++....+...+
T Consensus 64 ~~~~~~~~~~~~-~~vi~---------------iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 64 TKKWLKYFESKG-EKVLF---------------VNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred HHHHHHHHHhcC-CeEEE---------------EECCCcccHHHHHHHHHHHH
Confidence 22222 2222 24556 99999999988777776655
No 235
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.00021 Score=70.62 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=76.0
Q ss_pred CCcccccccccccC-----CCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025248 1 MFWKERERENKELN-----GGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV 74 (255)
Q Consensus 1 ~~w~~~~~~~~~~~-----g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~i 74 (255)
|+|+....++|-+| ||--| +.+.--+.-|.|+|||.|.++----+.+.+.+-.+.+ +.
T Consensus 66 l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----------------~L 129 (603)
T COG0481 66 LNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----------------NL 129 (603)
T ss_pred EEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----------------Cc
Confidence 45555555666555 44332 3333345678999999999987666666655544443 25
Q ss_pred cEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 75 PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 75 PiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
-||-|.||+||...+. .....++.+-.|+ ...+ ...+|||+|.||++.++.+++.+
T Consensus 130 eIiPViNKIDLP~Adp--------ervk~eIe~~iGi-d~~d------------av~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 130 EIIPVLNKIDLPAADP--------ERVKQEIEDIIGI-DASD------------AVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred EEEEeeecccCCCCCH--------HHHHHHHHHHhCC-Ccch------------heeEecccCCCHHHHHHHHHhhC
Confidence 6899999999987632 1445566666776 2222 22299999999999888888766
No 236
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.59 E-value=0.0002 Score=71.58 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=88.0
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.|...+|++||||.+.+..+|+.++....++..+. ....+|++++|++.=+.....+.+.. .+++
T Consensus 91 Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r-----------~r~~i~l~lvgtqd~iS~~~~rv~~d----a~~r 155 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYR-----------NISDLPLILVGTQDHISAKRPRVITD----DRAR 155 (749)
T ss_pred hhhhhccceEEEEEeccccCHHHHHHHHhhccccc-----------ccccchHHhhcCcchhhcccccccch----HHHH
Confidence 48889999999999999999999998877776542 13358999999997665554466666 7788
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccCCCCCC
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDEMPA 163 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s~~~~~ 163 (255)
+++.++.-+.|+| ++|.+|.+++..|..+...++..+..+.....
T Consensus 156 ~l~~~~krcsy~e---------------t~atyGlnv~rvf~~~~~k~i~~~~~qq~~~~ 200 (749)
T KOG0705|consen 156 QLSAQMKRCSYYE---------------TCATYGLNVERVFQEVAQKIVQLRKYQQLPAS 200 (749)
T ss_pred HHHHhcCccceee---------------cchhhhhhHHHHHHHHHHHHHHHHhhhhcccc
Confidence 8888877668888 99999999999999999999887655554443
No 237
>PRK13768 GTPase; Provisional
Probab=97.58 E-value=0.00015 Score=65.45 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=31.8
Q ss_pred CcEEEEEEECCChhhHHHHH--HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 29 DSGVIFVHDLSQRRTKTSLQ--KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 29 adgvIlVyDvT~~~Sfe~l~--~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
++++|+|+|.+...+...+. .|+...... ..++|+++|.||+|+...
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-------------~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-------------RLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHH-------------HcCCCEEEEEEhHhhcCc
Confidence 88999999997655443332 444433321 123899999999999765
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.58 E-value=0.00014 Score=66.25 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=52.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+..+. +.+..+++.+|++|+|+|.++...- ....|+..... .++|+++++|
T Consensus 75 liDTPG~~df~-------~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---------------~~~P~iivvN 131 (267)
T cd04169 75 LLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---------------RGIPIITFIN 131 (267)
T ss_pred EEECCCchHHH-------HHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---------------cCCCEEEEEE
Confidence 46666654221 2356688999999999999876432 22344433332 2389999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPL 120 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~ 120 (255)
|+|+..... . +...++.+.+++..+...+|+
T Consensus 132 K~D~~~a~~----~----~~~~~l~~~l~~~~~~~~~Pi 162 (267)
T cd04169 132 KLDREGRDP----L----ELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred CCccCCCCH----H----HHHHHHHHHHCCCceeEEecc
Confidence 999865411 0 224455566665333333444
No 239
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.56 E-value=0.00046 Score=61.34 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=30.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
.+|++|+|.|.....+- .-..++..+... .+|+++|.||+|+...
T Consensus 109 ~~D~~llVvda~~g~~~-~d~~~l~~l~~~---------------~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 109 APDYAMLVVAANAGIIG-MTKEHLGLALAL---------------NIPVFVVVTKIDLAPA 153 (224)
T ss_pred CCCEEEEEEECCCCCcH-HHHHHHHHHHHc---------------CCCEEEEEECccccCH
Confidence 57999999998765432 223444444442 2789999999998644
No 240
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.54 E-value=0.00019 Score=68.66 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE-EEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii-LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
.+|++|||+|.++...-+.. ..+..+... .+|.+ ||.||+|+.+.+ .. .+.+.++..+++
T Consensus 98 ~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---------------gi~~iIvvvNK~Dl~~~~--~~-~~~~~~~i~~~l 158 (394)
T TIGR00485 98 QMDGAILVVSATDGPMPQTR-EHILLARQV---------------GVPYIVVFLNKCDMVDDE--EL-LELVEMEVRELL 158 (394)
T ss_pred hCCEEEEEEECCCCCcHHHH-HHHHHHHHc---------------CCCEEEEEEEecccCCHH--HH-HHHHHHHHHHHH
Confidence 45999999999873222221 222233331 26654 689999997541 11 111234677777
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCC
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 138 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~ 138 (255)
+..++.. ..+|+++ +||++|.
T Consensus 159 ~~~~~~~--~~~~ii~---------vSa~~g~ 179 (394)
T TIGR00485 159 SEYDFPG--DDTPIIR---------GSALKAL 179 (394)
T ss_pred HhcCCCc--cCccEEE---------Ccccccc
Confidence 7776411 1244444 9999885
No 241
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.53 E-value=0.00027 Score=64.41 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=57.3
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
+......||.+|+|.|..++.+.++ .++.++.. +.|+|+|.||+||.+. ++
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l~----------------~kp~IiVlNK~DL~~~-----------~~ 65 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIRG----------------NKPRLIVLNKADLADP-----------AV 65 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHHC----------------CCCEEEEEEccccCCH-----------HH
Confidence 4456789999999999987655433 23333222 2689999999999643 22
Q ss_pred HHHHH---HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 102 ARQWV---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 102 a~~~a---~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
...|. ++.+. ..+. +||+++.++++..+.+...+-+
T Consensus 66 ~~~~~~~~~~~~~-~vi~---------------iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 66 TKQWLKYFEEKGI-KALA---------------INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred HHHHHHHHHHcCC-eEEE---------------EECCCcccHHHHHHHHHHHHHH
Confidence 23332 23332 4556 9999999998877777665543
No 242
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.51 E-value=0.00023 Score=67.23 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=70.9
Q ss_pred cccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCC
Q 025248 21 QVRVLVVGDSGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 90 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~----------~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~ 90 (255)
....||.+++++|||.|+++ ...++.....++.+.++. .-.++|++|++||.|+-.+.-
T Consensus 200 kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~-----------~~~~~piil~~NK~D~~~~Kl 268 (342)
T smart00275 200 KWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR-----------WFANTSIILFLNKIDLFEEKI 268 (342)
T ss_pred hHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc-----------cccCCcEEEEEecHHhHHHHh
Confidence 34569999999999999997 356777777777777632 234599999999999864321
Q ss_pred CccC-------C--ccHHHHHHHHHHH-cCCC-Ce--eecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 91 TRGS-------S--GNLVDAARQWVEK-QGLL-PS--SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 91 r~Vs-------~--~~l~e~a~~~a~~-~gl~-~~--~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
.... . .+-.+.+.+|..+ +..+ .- -..+... .|+|.+..++..+|+.+...|+++.
T Consensus 269 ~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h---------~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 269 KKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHH---------FTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred CCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEE---------EeeecccHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0111334433332 1100 00 0011112 2889999999999999888887754
No 243
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=5e-05 Score=65.78 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=53.2
Q ss_pred ccccCCCCC-CCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 10 NKELNGGPP-TGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 10 ~~~~~g~~~-~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
.+|+.||-- |-..+-||-.+|++++.+|+.|.+.|...+.-++-+.... ....+|+++.|||+|+...
T Consensus 68 t~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e-----------~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 68 TFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDE-----------SLATVPFLILGNKIDIPYA 136 (193)
T ss_pred EEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHH-----------HHhcCcceeecccccCCCc
Confidence 367776653 2333579999999999999999999999988887776632 1345999999999998755
No 244
>COG2262 HflX GTPases [General function prediction only]
Probab=97.41 E-value=0.0013 Score=63.62 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=60.8
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
..||.+|.|.|.+++.-.+.+..-..-+.+- +...+|+|+|-||+|+.... ......
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el------------~~~~~p~i~v~NKiD~~~~~-----------~~~~~~ 326 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEI------------GADEIPIILVLNKIDLLEDE-----------EILAEL 326 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHc------------CCCCCCEEEEEecccccCch-----------hhhhhh
Confidence 4789999999999998777776555444442 13349999999999987551 111112
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
.... ...+- +||++|.|+++..+.+...+...
T Consensus 327 ~~~~-~~~v~---------------iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 327 ERGS-PNPVF---------------ISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred hhcC-CCeEE---------------EEeccCcCHHHHHHHHHHHhhhc
Confidence 2211 02344 99999999988888888777643
No 245
>PRK12736 elongation factor Tu; Reviewed
Probab=97.41 E-value=0.00029 Score=67.49 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=46.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
..+|++|||+|.++...-+. ..++..+... .+| +|||.||+|+.+.+ .+. +.+.++..++
T Consensus 97 ~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---------------g~~~~IvviNK~D~~~~~--~~~-~~i~~~i~~~ 157 (394)
T PRK12736 97 AQMDGAILVVAATDGPMPQT-REHILLARQV---------------GVPYLVVFLNKVDLVDDE--ELL-ELVEMEVREL 157 (394)
T ss_pred hhCCEEEEEEECCCCCchhH-HHHHHHHHHc---------------CCCEEEEEEEecCCcchH--HHH-HHHHHHHHHH
Confidence 45799999999986322111 1223333332 277 67899999987431 111 1122456666
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCC
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR 138 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~ 138 (255)
.+..++. .+.+|+.+ +||++|.
T Consensus 158 l~~~~~~--~~~~~ii~---------vSa~~g~ 179 (394)
T PRK12736 158 LSEYDFP--GDDIPVIR---------GSALKAL 179 (394)
T ss_pred HHHhCCC--cCCccEEE---------eeccccc
Confidence 6666641 01234444 9999984
No 246
>COG1159 Era GTPase [General function prediction only]
Probab=97.38 E-value=0.00052 Score=63.98 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=62.4
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.-+.++|.++||.|.++.-.-. ..|+-+..+ ..++|++++.||+|....+ .+ +.....
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~--d~~il~~lk--------------~~~~pvil~iNKID~~~~~--~~----l~~~~~ 138 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPG--DEFILEQLK--------------KTKTPVILVVNKIDKVKPK--TV----LLKLIA 138 (298)
T ss_pred HHhccCcEEEEEEeccccCCcc--HHHHHHHHh--------------hcCCCeEEEEEccccCCcH--HH----HHHHHH
Confidence 4578999999999998844332 245544444 1347999999999987652 10 112333
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
.+...+.+...+. +||+.|.|++...+.+...|-+.
T Consensus 139 ~~~~~~~f~~ivp---------------iSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 139 FLKKLLPFKEIVP---------------ISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred HHHhhCCcceEEE---------------eeccccCCHHHHHHHHHHhCCCC
Confidence 3444444445555 99999999988888777766554
No 247
>PRK09866 hypothetical protein; Provisional
Probab=97.38 E-value=0.00091 Score=68.48 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=57.5
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
..+.+||+||||.|.++..+...- ..++.+.+. +...|+++|.||+|+.+.. .-.. +...
T Consensus 254 eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-------------~K~~PVILVVNKIDl~dre--eddk----E~Ll 313 (741)
T PRK09866 254 QQLARASAVLAVLDYTQLKSISDE-EVREAILAV-------------GQSVPLYVLVNKFDQQDRN--SDDA----DQVR 313 (741)
T ss_pred HHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-------------CCCCCEEEEEEcccCCCcc--cchH----HHHH
Confidence 368899999999999986555542 223334332 2236999999999986431 1111 3344
Q ss_pred HHHHHc----CC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 104 QWVEKQ----GL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 104 ~~a~~~----gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
++.+.. +. ...+. +||+.|.|+++.++.+..
T Consensus 314 e~V~~~L~q~~i~f~eIfP---------------VSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 314 ALISGTLMKGCITPQQIFP---------------VSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHhcCCCCceEEE---------------EeCCCCCCHHHHHHHHHh
Confidence 443321 21 13344 999999998888777765
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00059 Score=67.74 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=62.6
Q ss_pred ccCCCCCCCcccc-cccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 12 ELNGGPPTGQVRV-LVVGDSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 12 ~~~g~~~~gq~r~-Yyr~adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
|+-||.-|-.+|. =..=+|.+|||.|+.|- ++.+.+.. ++ ..++|++|+.||+|..+
T Consensus 61 DTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak---------------~a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 61 DTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH----AK---------------AAGVPIVVAINKIDKPE 121 (509)
T ss_pred cCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH----HH---------------HCCCCEEEEEecccCCC
Confidence 3445555555543 13457899999999974 55555322 22 23499999999999885
Q ss_pred CCCCccCCccHHHHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 88 KEGTRGSSGNLVDAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 88 ~~~r~Vs~~~l~e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
.+. +....-..++|+. .|-.++.+.+ +|||+|.|+.+.++.+.-
T Consensus 122 ~np---------~~v~~el~~~gl~~E~~gg~v~~Vp---------vSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 122 ANP---------DKVKQELQEYGLVPEEWGGDVIFVP---------VSAKTGEGIDELLELILL 167 (509)
T ss_pred CCH---------HHHHHHHHHcCCCHhhcCCceEEEE---------eeccCCCCHHHHHHHHHH
Confidence 532 3333333344542 1222344444 999999999988877653
No 249
>PRK12740 elongation factor G; Reviewed
Probab=97.35 E-value=0.00048 Score=70.04 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=40.2
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+.+..+++.+|++|+|+|.++..+......|. .+.. ..+|+++|.||+|+...
T Consensus 75 ~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---------------~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 75 GEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---------------YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---------------cCCCEEEEEECCCCCCC
Confidence 34567899999999999999988777655553 3333 23899999999998754
No 250
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.35 E-value=0.00057 Score=57.51 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=57.9
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVE 107 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~ 107 (255)
+||.|++|.|.+++.+.-. ..+.. .-+.|+|=|.||+|+...+ .. . +.++++.+
T Consensus 63 dad~V~ll~dat~~~~~~p-----P~fa~--------------~f~~pvIGVITK~Dl~~~~-~~--i----~~a~~~L~ 116 (143)
T PF10662_consen 63 DADVVLLLQDATEPRSVFP-----PGFAS--------------MFNKPVIGVITKIDLPSDD-AN--I----ERAKKWLK 116 (143)
T ss_pred hCCEEEEEecCCCCCccCC-----chhhc--------------ccCCCEEEEEECccCccch-hh--H----HHHHHHHH
Confidence 7899999999998765311 11111 2237899999999998331 11 1 67889999
Q ss_pred HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHH
Q 025248 108 KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 147 (255)
Q Consensus 108 ~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l 147 (255)
..|+...|+ +||.+|+||++..+.|
T Consensus 117 ~aG~~~if~---------------vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 117 NAGVKEIFE---------------VSAVTGEGIEELKDYL 141 (143)
T ss_pred HcCCCCeEE---------------EECCCCcCHHHHHHHH
Confidence 999877788 9999998888776654
No 251
>PRK12735 elongation factor Tu; Reviewed
Probab=97.31 E-value=0.00054 Score=65.67 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=48.4
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE-EEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii-LVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
...+|++|||+|.++...-+ ...++..+... .+|.+ ||.||+|+.+.+ . ....+.+++..
T Consensus 96 ~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---------------gi~~iivvvNK~Dl~~~~--~-~~~~~~~ei~~ 156 (396)
T PRK12735 96 AAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFLNKCDMVDDE--E-LLELVEMEVRE 156 (396)
T ss_pred hccCCEEEEEEECCCCCchh-HHHHHHHHHHc---------------CCCeEEEEEEecCCcchH--H-HHHHHHHHHHH
Confidence 45679999999998743222 22333333332 27755 679999997431 1 11122345667
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 139 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n 139 (255)
+.+..++.. +.+++.+ +||++|.|
T Consensus 157 ~l~~~~~~~--~~~~ii~---------~Sa~~g~n 180 (396)
T PRK12735 157 LLSKYDFPG--DDTPIIR---------GSALKALE 180 (396)
T ss_pred HHHHcCCCc--CceeEEe---------cchhcccc
Confidence 777665411 1234444 99999865
No 252
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.31 E-value=0.0002 Score=64.59 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=73.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH---HHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ---KWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~---~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
.||-+|+.++..+. ...|....|+++.++|+|+|+.+.+-.+.+. ..+..+.++ ..++.+.|
T Consensus 52 iwD~pGq~~~~~~~--~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-------------sp~~~v~v 116 (232)
T PF04670_consen 52 IWDCPGQDDFMENY--FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-------------SPNIKVFV 116 (232)
T ss_dssp EEEE-SSCSTTHTT--HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-------------STT-EEEE
T ss_pred EEEcCCcccccccc--ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-------------CCCCeEEE
Confidence 48888887554320 0134456899999999999999665444443 444444554 34588999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
..+|+|+..++.|........+...+.+...+. +.|+. ||.-+ ..+-+|+.++++.|+-+
T Consensus 117 fiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 117 FIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL---------------TSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp EEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE---------------E-TTS-THHHHHHHHHHHTTSTT
T ss_pred EEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe---------------ccCcC-cHHHHHHHHHHHHHccc
Confidence 999999976533443333344555556666652 25555 88876 57778888888777643
No 253
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.30 E-value=0.00029 Score=67.86 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=50.2
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
-...+|++|||+|.+....-+....|. .+... + ..++|||.||+|+.... .-....+.++...
T Consensus 100 ~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-------------~-~~~iivviNK~D~~~~~--~~~~~~i~~~~~~ 162 (406)
T TIGR02034 100 GASTADLAVLLVDARKGVLEQTRRHSY-IASLL-------------G-IRHVVLAVNKMDLVDYD--EEVFENIKKDYLA 162 (406)
T ss_pred HHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-------------C-CCcEEEEEEecccccch--HHHHHHHHHHHHH
Confidence 357899999999987653222212222 12221 1 12588999999987531 1111112244445
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 142 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e 142 (255)
+.++.++. ++++.+ +||++|.|+++
T Consensus 163 ~~~~~~~~----~~~iip---------iSA~~g~ni~~ 187 (406)
T TIGR02034 163 FAEQLGFR----DVTFIP---------LSALKGDNVVS 187 (406)
T ss_pred HHHHcCCC----CccEEE---------eecccCCCCcc
Confidence 55665542 233333 99999999875
No 254
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.30 E-value=0.00083 Score=57.84 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=57.1
Q ss_pred ccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCC--Ccc---CCccHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG--TRG---SSGNLV 99 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~--r~V---s~~~l~ 99 (255)
+.++|++|+|-| .+|.... .|++.+... ..|+++|+||+|+..... ... ..+.+.
T Consensus 78 ~~~~d~~l~v~~----~~~~~~d~~~~~~l~~~---------------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l 138 (197)
T cd04104 78 FSEYDFFIIISS----TRFSSNDVKLAKAIQCM---------------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVL 138 (197)
T ss_pred ccCcCEEEEEeC----CCCCHHHHHHHHHHHHh---------------CCCEEEEEecccchhhhhhccccccccHHHHH
Confidence 678899888833 3455555 666666653 268999999999853211 001 111122
Q ss_pred HHHHHHHH----HcCC--CCeeecCCCCCCCCCCCCcceeee--cCCCHHHHHHHHHHHHHHHhc
Q 025248 100 DAARQWVE----KQGL--LPSSEELPLTESFPGGGGLIAAAK--EARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 100 e~a~~~a~----~~gl--~~~~Ee~p~~e~~~~~~~~~tSAk--~g~nv~e~f~~l~~~li~~~~ 156 (255)
++.++.+. ..+. .+++- +|+. .+.++....+.+...|-+.+.
T Consensus 139 ~~i~~~~~~~~~~~~~~~p~v~~---------------vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 139 QEIRDNCLENLQEAGVSEPPVFL---------------VSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEE---------------EeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 22222222 2222 23444 8888 678888888888888876443
No 255
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.30 E-value=0.0012 Score=57.46 Aligned_cols=56 Identities=14% Similarity=-0.059 Sum_probs=37.8
Q ss_pred CcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 74 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 74 iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
.+.+||+||+|+.+. ..... ++..+..++.+ ..++++ +||++|.|+++.|+++.++
T Consensus 149 ~a~iiv~NK~Dl~~~--~~~~~----~~~~~~l~~~~~~~~i~~---------------~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEA--VGFDV----EKMKADAKKINPEAEIIL---------------MSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHcccc--chhhH----HHHHHHHHHhCCCCCEEE---------------EECCCCCCHHHHHHHHHHh
Confidence 567999999999754 12111 33444444433 235666 9999999999999988764
No 256
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.28 E-value=0.00079 Score=61.78 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=56.7
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
+..-+..||.+|+|.|..++.+.++ .++.+... ..|+++|.||+||.+. +.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----------------~kp~iiVlNK~DL~~~-----------~~ 68 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----------------NKPRLLILNKSDLADP-----------EV 68 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----------------CCCEEEEEEchhcCCH-----------HH
Confidence 3456789999999999987765443 33333322 2689999999999643 22
Q ss_pred HHHHH---HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 102 ARQWV---EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 102 a~~~a---~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
...|. ++.+. ..+. +||+++.++++..+.+...+-
T Consensus 69 ~~~~~~~~~~~~~-~vi~---------------vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 69 TKKWIEYFEEQGI-KALA---------------INAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred HHHHHHHHHHcCC-eEEE---------------EECCCcccHHHHHHHHHHHHH
Confidence 22333 23342 4455 999999999887777665543
No 257
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.26 E-value=0.00029 Score=69.36 Aligned_cols=89 Identities=16% Similarity=0.037 Sum_probs=49.3
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
...+|++|||.|.+..-.-.....|. +.... + ..++|||.||+|+... ..-....+.++...+
T Consensus 128 l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l------------g-~~~iIvvvNKiD~~~~--~~~~~~~i~~~l~~~ 190 (474)
T PRK05124 128 ASTCDLAILLIDARKGVLDQTRRHSF--IATLL------------G-IKHLVVAVNKMDLVDY--SEEVFERIREDYLTF 190 (474)
T ss_pred HhhCCEEEEEEECCCCccccchHHHH--HHHHh------------C-CCceEEEEEeeccccc--hhHHHHHHHHHHHHH
Confidence 58899999999997643211111221 22210 1 1368999999999753 111111222334444
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA 143 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~ 143 (255)
.++.+. ...+++++ +||++|.|+++.
T Consensus 191 ~~~~~~---~~~~~iip---------vSA~~g~ni~~~ 216 (474)
T PRK05124 191 AEQLPG---NLDIRFVP---------LSALEGDNVVSQ 216 (474)
T ss_pred HHhcCC---CCCceEEE---------EEeecCCCcccc
Confidence 444441 11234444 999999999764
No 258
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.26 E-value=0.00084 Score=67.47 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=61.3
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
..+|.++++||.+++.||+-+....+.-.. ...+|+++|+.|+||... .+... -.-.++|
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~--------------~~~~Pc~~va~K~dlDe~--~Q~~~----iqpde~~ 553 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFD--------------LYKIPCLMVATKADLDEV--PQRYS----IQPDEFC 553 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhh--------------ccCCceEEEeeccccchh--hhccC----CChHHHH
Confidence 568899999999999999987654433222 345999999999999876 33222 2238999
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+++++.+-.- .|.+. ..-.+.|.+|+.+.
T Consensus 554 ~~~~i~~P~~---------------~S~~~-~~s~~lf~kL~~~A 582 (625)
T KOG1707|consen 554 RQLGLPPPIH---------------ISSKT-LSSNELFIKLATMA 582 (625)
T ss_pred HhcCCCCCee---------------eccCC-CCCchHHHHHHHhh
Confidence 9999854444 66664 22246666666554
No 259
>PRK01889 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.002 Score=61.22 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=58.1
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
+.++...++|.+++|.++...-....+.+++..+... +++.+||.||+||.+.. +
T Consensus 105 ~~q~iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---------------~i~piIVLNK~DL~~~~----------~ 159 (356)
T PRK01889 105 EEQLIAANVDTVFIVCSLNHDFNLRRIERYLALAWES---------------GAEPVIVLTKADLCEDA----------E 159 (356)
T ss_pred cceeEEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---------------CCCEEEEEEChhcCCCH----------H
Confidence 3445678899999999997655666777887766652 27789999999997541 1
Q ss_pred HHHHHHHHcCC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHH
Q 025248 101 AARQWVEKQGL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 147 (255)
Q Consensus 101 ~a~~~a~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l 147 (255)
+..++...... .+.+. +||+++.++++....+
T Consensus 160 ~~~~~~~~~~~g~~Vi~---------------vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 160 EKIAEVEALAPGVPVLA---------------VSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHHHHhCCCCcEEE---------------EECCCCccHHHHHHHh
Confidence 12222222221 14555 9999998877655554
No 260
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.23 E-value=0.0025 Score=60.72 Aligned_cols=97 Identities=20% Similarity=0.132 Sum_probs=66.0
Q ss_pred CCcEEEEEEECCChhh---HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRT---KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 28 ~adgvIlVyDvT~~~S---fe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
.+.+++.|.|++..+- .++.+....|+..+ .+...+-|.+||+||+|+.... +++......
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y----------~~~L~~K~~ivv~NKiD~~~~~------e~~~~~~~~ 300 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY----------SPKLAEKPRIVVLNKIDLPLDE------EELEELKKA 300 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHh----------hHHhccCceEEEEeccCCCcCH------HHHHHHHHH
Confidence 4667899999997764 67777777777776 3334567899999999965431 112233344
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
+.+..+.....- +||.++.++++.+..+.+.+-+..
T Consensus 301 l~~~~~~~~~~~---------------ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 301 LAEALGWEVFYL---------------ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred HHHhcCCCccee---------------eehhcccCHHHHHHHHHHHHHHhh
Confidence 444444322222 899999999999999888877664
No 261
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.13 E-value=0.0022 Score=62.78 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=61.3
Q ss_pred CcccccccCCcEEEEEEECCChhhHH--HHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCcc
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 97 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe--~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~ 97 (255)
.|+..-+..||++|||.|....-+-+ .+.+|+. . .+.|+|||.||+|-...+
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr---~---------------~~kpviLvvNK~D~~~~e-------- 128 (444)
T COG1160 75 EQALIAIEEADVILFVVDGREGITPADEEIAKILR---R---------------SKKPVILVVNKIDNLKAE-------- 128 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---h---------------cCCCEEEEEEcccCchhh--------
Confidence 34556688999999999987744433 2334443 2 227999999999965331
Q ss_pred HHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 98 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 98 l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+.+.+| -.+|+...+- +||.-|.|+.+.++.++..+
T Consensus 129 --~~~~ef-yslG~g~~~~---------------ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 129 --ELAYEF-YSLGFGEPVP---------------ISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred --hhHHHH-HhcCCCCceE---------------eehhhccCHHHHHHHHHhhc
Confidence 223333 3577766666 99999999988888888776
No 262
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.10 E-value=0.0029 Score=55.06 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=51.9
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
-...+|++|+|.|.+..-.-+. ...+..+... .+| +|+|.||+|+..+. .. ...+.++..
T Consensus 85 ~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---------------~~~~iIvviNK~D~~~~~--~~-~~~~~~~i~ 145 (195)
T cd01884 85 GAAQMDGAILVVSATDGPMPQT-REHLLLARQV---------------GVPYIVVFLNKADMVDDE--EL-LELVEMEVR 145 (195)
T ss_pred HhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---------------CCCcEEEEEeCCCCCCcH--HH-HHHHHHHHH
Confidence 3567999999999987533222 2333334432 255 78899999986431 11 112334566
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK 141 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~ 141 (255)
++..+.|+. -+.+|+.+ +||++|.|+.
T Consensus 146 ~~l~~~g~~--~~~v~iip---------iSa~~g~n~~ 172 (195)
T cd01884 146 ELLSKYGFD--GDNTPIVR---------GSALKALEGD 172 (195)
T ss_pred HHHHHhccc--ccCCeEEE---------eeCccccCCC
Confidence 666666641 11355555 9999998863
No 263
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.05 E-value=0.0012 Score=66.01 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=37.2
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
.+..+++.+|++|+|+|.++.-.- ....++..+.. .++|+++++||+|+...
T Consensus 95 ~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---------------~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 95 DTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---------------RDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---------------cCCCEEEEEECCccccc
Confidence 356688999999999999886422 23344444333 23899999999998754
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.03 E-value=0.0014 Score=67.23 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=52.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+..+ .+.+..+++.+|++|||+|.++....+...-| ..+.. ..+|++||+|
T Consensus 79 liDTPG~~~~-------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---------------~~~p~ivviN 135 (689)
T TIGR00484 79 IIDTPGHVDF-------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---------------YEVPRIAFVN 135 (689)
T ss_pred EEECCCCcch-------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---------------cCCCEEEEEE
Confidence 5666665422 23456789999999999999987666554433 33333 2389999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCC
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLP 113 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~ 113 (255)
|+|+.... +.+...++.+.++...
T Consensus 136 K~D~~~~~--------~~~~~~~i~~~l~~~~ 159 (689)
T TIGR00484 136 KMDKTGAN--------FLRVVNQIKQRLGANA 159 (689)
T ss_pred CCCCCCCC--------HHHHHHHHHHHhCCCc
Confidence 99987541 1134455666666533
No 265
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.88 E-value=0.0011 Score=67.36 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=49.7
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
...+|++|||.|.+....-+... .+..+... + ..++|||.||+|+.... .-....+.++..++
T Consensus 125 ~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~-------------~-~~~iivvvNK~D~~~~~--~~~~~~i~~~i~~~ 187 (632)
T PRK05506 125 ASTADLAIILVDARKGVLTQTRR-HSFIASLL-------------G-IRHVVLAVNKMDLVDYD--QEVFDEIVADYRAF 187 (632)
T ss_pred HHhCCEEEEEEECCCCccccCHH-HHHHHHHh-------------C-CCeEEEEEEecccccch--hHHHHHHHHHHHHH
Confidence 56899999999997643221111 12122221 1 14688999999997531 10111122444455
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 142 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e 142 (255)
.++.++ +++++++ +||++|.|+++
T Consensus 188 ~~~~~~----~~~~iip---------iSA~~g~ni~~ 211 (632)
T PRK05506 188 AAKLGL----HDVTFIP---------ISALKGDNVVT 211 (632)
T ss_pred HHHcCC----CCccEEE---------EecccCCCccc
Confidence 556664 2233444 99999999874
No 266
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.82 E-value=0.0017 Score=64.90 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=41.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+..+ .+.+..+++.+|++|+|+|.++.- ......|+..+.. .++|+++++|
T Consensus 84 liDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---------------~~~PiivviN 140 (527)
T TIGR00503 84 LLDTPGHEDF-------SEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---------------RDTPIFTFMN 140 (527)
T ss_pred EEECCChhhH-------HHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---------------cCCCEEEEEE
Confidence 5666665421 133556789999999999998742 1223344443332 2389999999
Q ss_pred CCCCCCC
Q 025248 82 KADVAAK 88 (255)
Q Consensus 82 K~DL~~~ 88 (255)
|+|+...
T Consensus 141 KiD~~~~ 147 (527)
T TIGR00503 141 KLDRDIR 147 (527)
T ss_pred CccccCC
Confidence 9998643
No 267
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.81 E-value=0.0066 Score=59.54 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=57.4
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
...|+.|+||.|.+..-+-+.+. .+..+.+. ..+++||.||.|+... ...+.+.+.++.+.
T Consensus 258 I~~a~vvllviDa~~~~~~qD~~-ia~~i~~~---------------g~~~vIvvNKWDl~~~--~~~~~~~~k~~i~~- 318 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDLR-IAGLIEEA---------------GRGIVIVVNKWDLVEE--DEATMEEFKKKLRR- 318 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHHH-HHHHHHHc---------------CCCeEEEEEccccCCc--hhhHHHHHHHHHHH-
Confidence 44689999999999987766643 23333332 2679999999998765 23333122222222
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
++. |+.=.|+.. +||++|.++.+.|+.+...
T Consensus 319 --~l~---~l~~a~i~~---------iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 319 --KLP---FLDFAPIVF---------ISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred --Hhc---cccCCeEEE---------EEecCCCChHHHHHHHHHH
Confidence 222 222223444 9999999998888776653
No 268
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=96.70 E-value=0.0031 Score=59.27 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHH-HHHHHH
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM-KFFRML 151 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~-~l~~~l 151 (255)
..|+|+|.||+|+...+ +....+..+......+. +||+.+.++++..+ .+...+
T Consensus 214 ~KPvI~VlNK~Dl~~~~----------~~~~~l~~~~~~~~iI~---------------iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 214 SKPMVIAANKADIPDAE----------NNISKLRLKYPDEIVVP---------------TSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CCcEEEEEEHHHccChH----------HHHHHHHhhCCCCeEEE---------------EeCcccccHHHHHHhhHHHhC
Confidence 47999999999975331 11122223333334555 99999988888776 466665
Q ss_pred HHH
Q 025248 152 IRR 154 (255)
Q Consensus 152 i~~ 154 (255)
-+.
T Consensus 269 Pe~ 271 (318)
T cd01899 269 PGD 271 (318)
T ss_pred CCC
Confidence 443
No 269
>PLN03126 Elongation factor Tu; Provisional
Probab=96.67 E-value=0.0027 Score=62.81 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=51.8
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
...+|++|||+|.++...-+. ..++..+... .+| +||+.||+|+.+.+ .. .+.+.++..+
T Consensus 165 ~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---------------gi~~iIvvvNK~Dl~~~~--~~-~~~i~~~i~~ 225 (478)
T PLN03126 165 AAQMDGAILVVSGADGPMPQT-KEHILLAKQV---------------GVPNMVVFLNKQDQVDDE--EL-LELVELEVRE 225 (478)
T ss_pred HhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---------------CCCeEEEEEecccccCHH--HH-HHHHHHHHHH
Confidence 457899999999886543322 3344444432 277 78899999997531 11 2223356667
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 140 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv 140 (255)
+.++.|+.. ..+|+.. +||.+|.|+
T Consensus 226 ~l~~~g~~~--~~~~~vp---------~Sa~~g~n~ 250 (478)
T PLN03126 226 LLSSYEFPG--DDIPIIS---------GSALLALEA 250 (478)
T ss_pred HHHhcCCCc--CcceEEE---------EEccccccc
Confidence 776665411 2355555 899888544
No 270
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.61 E-value=0.012 Score=57.92 Aligned_cols=91 Identities=8% Similarity=0.100 Sum_probs=50.2
Q ss_pred cCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 27 r~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
..+|++|||.|.++.- .-+.. ..+..+... + -.++|||.||+|+.+.+ .+. ...++..++
T Consensus 139 ~~~D~alLVVda~~g~~~~qT~-ehl~i~~~l-------------g-i~~iIVvlNKiDlv~~~--~~~--~~~~ei~~~ 199 (460)
T PTZ00327 139 AVMDAALLLIAANESCPQPQTS-EHLAAVEIM-------------K-LKHIIILQNKIDLVKEA--QAQ--DQYEEIRNF 199 (460)
T ss_pred hhCCEEEEEEECCCCccchhhH-HHHHHHHHc-------------C-CCcEEEEEecccccCHH--HHH--HHHHHHHHH
Confidence 3579999999998741 11111 222222221 1 13589999999997531 110 111333333
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
.+... .+..|+++ +||++|.|+++.++.|..
T Consensus 200 l~~~~----~~~~~iip---------VSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 200 VKGTI----ADNAPIIP---------ISAQLKYNIDVVLEYICT 230 (460)
T ss_pred HHhhc----cCCCeEEE---------eeCCCCCCHHHHHHHHHh
Confidence 33221 12344444 999999998777766664
No 271
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.56 E-value=0.0056 Score=56.00 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=37.2
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+.+..+++.+|++|+|.|.++...-.. ...+..+... ++|++++.||+|+...
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---------------~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---------------NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---------------CCCEEEEEECCCCCCC
Confidence 456678999999999999987543222 2333344432 3899999999998753
No 272
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.49 E-value=0.0077 Score=59.23 Aligned_cols=83 Identities=23% Similarity=0.143 Sum_probs=52.4
Q ss_pred ccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
.-...||.+|+|+|.+...+-+... .| .+ ..+.|+++|.||+||..+. .... .
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~--~~----------------~~~~~~i~v~NK~DL~~~~--~~~~------~ 345 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLALIE--LL----------------PKKKPIIVVLNKADLVSKI--ELES------E 345 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHHHH--hc----------------ccCCCEEEEEechhccccc--ccch------h
Confidence 3578999999999999964333322 33 11 2237899999999998762 1111 1
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++. .+. ..+. +|||+|.|++..-+.+-..+
T Consensus 346 -~~~--~~~-~~i~---------------iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 346 -KLA--NGD-AIIS---------------ISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred -hcc--CCC-ceEE---------------EEecCccCHHHHHHHHHHHH
Confidence 111 121 4566 99999988766555555444
No 273
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.31 E-value=0.021 Score=54.60 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=65.2
Q ss_pred EEEEEECCChh-hHHHHHHHHHHHHHhCCCC----------------------CCC--------C-------CC------
Q 025248 32 VIFVHDLSQRR-TKTSLQKWAVEIATSGTFS----------------------APL--------A-------SG------ 67 (255)
Q Consensus 32 vIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s----------------------~~~--------~-------s~------ 67 (255)
|||+.|++++. -+++|++|+.-+.++...- .|. . +.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 89999999994 5678899998765542211 000 0 00
Q ss_pred ------CCCCCCCcEEEEEeCCCCCC----CC-CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeec
Q 025248 68 ------GPGGLPVPYVVIGNKADVAA----KE-GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE 136 (255)
Q Consensus 68 ------~~~~~~iPiiLVGNK~DL~~----~~-~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~ 136 (255)
-.....+|++||.+|||... +. -|..-.+.+....+.||-++|. ..+. ||+|+
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiy---------------TSvKE 274 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIY---------------TSVKE 274 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEE---------------eeccc
Confidence 01223589999999999832 10 0222222334667889999997 5666 99999
Q ss_pred CCCHHHHHHHHHHHH
Q 025248 137 ARYDKEAVMKFFRML 151 (255)
Q Consensus 137 g~nv~e~f~~l~~~l 151 (255)
..|++-....|++.+
T Consensus 275 ~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 275 TKNIDLLYKYIVHRS 289 (473)
T ss_pred ccchHHHHHHHHHHh
Confidence 987755544444443
No 274
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.29 E-value=0.0031 Score=56.87 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=39.6
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+++..+++.+|++|+|+|.++.........|. .+.. ..+|+++|.||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~---------------~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE---------------AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH---------------cCCCEEEEEECCccCCC
Confidence 45667899999999999999887765544443 2332 23899999999998754
No 275
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.17 E-value=0.0065 Score=52.98 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=44.3
Q ss_pred ccCCCCCCCc--ccc--cccCCcEEEEEEECC-ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 12 ELNGGPPTGQ--VRV--LVVGDSGVIFVHDLS-QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 12 ~~~g~~~~gq--~r~--Yyr~adgvIlVyDvT-~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
|.-||+.... ... |...+.|||||.|.+ ....+..+..++..|....... ...+|++|+.||.|+.
T Consensus 55 D~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~---------~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 55 DIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ---------KNKPPILIACNKQDLF 125 (181)
T ss_dssp EETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC---------TT--EEEEEEE-TTST
T ss_pred ECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc---------cCCCCEEEEEeCcccc
Confidence 3446665432 112 577899999999987 4667788888888887643211 3459999999999997
Q ss_pred CC
Q 025248 87 AK 88 (255)
Q Consensus 87 ~~ 88 (255)
..
T Consensus 126 ~A 127 (181)
T PF09439_consen 126 TA 127 (181)
T ss_dssp T-
T ss_pred cc
Confidence 65
No 276
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.15 E-value=0.027 Score=53.35 Aligned_cols=91 Identities=15% Similarity=0.028 Sum_probs=51.7
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
..-||.+|+|.+....+....+ ...+.+ +.-|+|.||+|+..... ......++
T Consensus 167 ~~~aD~vlvv~~p~~gd~iq~~---k~gi~E-----------------~aDIiVVNKaDl~~~~~-------a~~~~~el 219 (332)
T PRK09435 167 AGMVDFFLLLQLPGAGDELQGI---KKGIME-----------------LADLIVINKADGDNKTA-------ARRAAAEY 219 (332)
T ss_pred HHhCCEEEEEecCCchHHHHHH---Hhhhhh-----------------hhheEEeehhcccchhH-------HHHHHHHH
Confidence 4568999999553333333332 222333 33489999999876521 11222333
Q ss_pred HHHcCCCCee---ecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 106 VEKQGLLPSS---EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 106 a~~~gl~~~~---Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
.+.+.+...- -+.|+.. +||+++.||++.++.+.+++-
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~---------vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLT---------CSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHhcccccccCCCCCEEE---------EECCCCCCHHHHHHHHHHHHH
Confidence 3333321100 0124444 999999999999999888654
No 277
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.15 E-value=0.012 Score=55.75 Aligned_cols=105 Identities=19% Similarity=0.110 Sum_probs=60.2
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCC------CccCCccHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG------TRGSSGNLV 99 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~------r~Vs~~~l~ 99 (255)
...||+|++|+|+++....-+- ..+..+..+ .++|-|||-||+|+..... ...+.+.+.
T Consensus 153 ~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y--------------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~ 217 (379)
T KOG1423|consen 153 AQNADCVVVVVDASATRTPLHP-RVLHMLEEY--------------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA 217 (379)
T ss_pred HhhCCEEEEEEeccCCcCccCh-HHHHHHHHH--------------hcCCceeeccchhcchhhhHHhhhHHhccccccc
Confidence 4579999999999985444332 334444443 2388999999999875420 112233333
Q ss_pred HHHHHHHHHcCCCCeeecCCCCCCCCCCCC-------cceeeecCCCHHHHHHHHHHHH
Q 025248 100 DAARQWVEKQGLLPSSEELPLTESFPGGGG-------LIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~-------~~tSAk~g~nv~e~f~~l~~~l 151 (255)
..-.++.++.-..+-.+ +| +.-.| |-+||++|.||++.=+.|...+
T Consensus 218 ~~kl~v~~~f~~~p~~~-~~-----~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 218 KLKLEVQEKFTDVPSDE-KW-----RTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hhhhhHHHHhccCCccc-cc-----ccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 33445555554444111 11 00011 1299999988887777666543
No 278
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.03 E-value=0.042 Score=52.35 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=44.6
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
-+|.|+|.||+|+... ++...+.++. .++- +||+.+.|+++..+.++++|-
T Consensus 239 Y~p~l~v~NKiD~~~~-----------e~~~~l~~~~---~~v~---------------isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 239 YKPALYVVNKIDLPGL-----------EELERLARKP---NSVP---------------ISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeeEEEEecccccCH-----------HHHHHHHhcc---ceEE---------------EecccCCCHHHHHHHHHHhhC
Confidence 4799999999999865 6666676665 4566 999999999999999999886
Q ss_pred HHhcc
Q 025248 153 RRRYF 157 (255)
Q Consensus 153 ~~~~~ 157 (255)
--|-|
T Consensus 290 liRVY 294 (365)
T COG1163 290 LIRVY 294 (365)
T ss_pred eEEEE
Confidence 54433
No 279
>CHL00071 tufA elongation factor Tu
Probab=96.03 E-value=0.029 Score=54.04 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=50.4
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
...+|++|+|.|.+..-.-+ -...+..+... .+| +|||.||+|+.+.+ . ..+.+.+++.+
T Consensus 96 ~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~---------------g~~~iIvvvNK~D~~~~~--~-~~~~~~~~l~~ 156 (409)
T CHL00071 96 AAQMDGAILVVSAADGPMPQ-TKEHILLAKQV---------------GVPNIVVFLNKEDQVDDE--E-LLELVELEVRE 156 (409)
T ss_pred HHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCEEEEEEEccCCCCHH--H-HHHHHHHHHHH
Confidence 45799999999998643222 22333333332 277 77899999997541 1 11223345666
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYD 140 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv 140 (255)
+.+..++.. +.+|+.. +||++|.|+
T Consensus 157 ~l~~~~~~~--~~~~ii~---------~Sa~~g~n~ 181 (409)
T CHL00071 157 LLSKYDFPG--DDIPIVS---------GSALLALEA 181 (409)
T ss_pred HHHHhCCCC--CcceEEE---------cchhhcccc
Confidence 666665411 1245555 999998754
No 280
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.01 E-value=0.04 Score=52.40 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=61.7
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 29 DSGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 29 adgvIlVyDvT~~~--Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
+++|||++|.+... +.+.=...+++|... -..|+++|.||+|+.+.+ .+ +++....
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~--------------f~~p~v~V~nK~D~~~~e--~~------~~~~~~~ 305 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKEL--------------FKAPIVVVINKIDIADEE--KL------EEIEASV 305 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHh--------------cCCCeEEEEecccccchh--HH------HHHHHHH
Confidence 45689999998765 555555788888874 227999999999998652 11 3344445
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
...|...... +++..+.+++++-..+.....+.
T Consensus 306 ~~~~~~~~~~---------------~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 306 LEEGGEEPLK---------------ISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred Hhhccccccc---------------eeeeehhhHHHHHHHHHHHhhch
Confidence 5555434555 89999988887777777665443
No 281
>PRK00049 elongation factor Tu; Reviewed
Probab=95.95 E-value=0.021 Score=54.90 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=48.2
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE-EEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii-LVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
-...+|++|+|.|.++...-+ ...++..+... .+|++ |+.||+|+...+ .. ...+.++..
T Consensus 95 ~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~---------------g~p~iiVvvNK~D~~~~~--~~-~~~~~~~i~ 155 (396)
T PRK00049 95 GAAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFLNKCDMVDDE--EL-LELVEMEVR 155 (396)
T ss_pred hhccCCEEEEEEECCCCCchH-HHHHHHHHHHc---------------CCCEEEEEEeecCCcchH--HH-HHHHHHHHH
Confidence 356899999999998753322 22333344432 27865 689999987431 11 111223455
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 139 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n 139 (255)
++....++. -+.+|+.. +||++|.+
T Consensus 156 ~~l~~~~~~--~~~~~iv~---------iSa~~g~~ 180 (396)
T PRK00049 156 ELLSKYDFP--GDDTPIIR---------GSALKALE 180 (396)
T ss_pred HHHHhcCCC--ccCCcEEE---------eecccccC
Confidence 555555531 12345555 99998854
No 282
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.88 E-value=0.017 Score=53.34 Aligned_cols=20 Identities=20% Similarity=-0.090 Sum_probs=18.1
Q ss_pred eeeecCCCHHHHHHHHHHHH
Q 025248 132 AAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 132 tSAk~g~nv~e~f~~l~~~l 151 (255)
+||+++.|+++.++++.+.+
T Consensus 218 iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 218 TSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred EEccCCCCHHHHHHHHHHHH
Confidence 99999999999999988763
No 283
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.037 Score=55.91 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=60.6
Q ss_pred ccCCCCCCCccccc-ccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 12 ELNGGPPTGQVRVL-VVGDSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 12 ~~~g~~~~gq~r~Y-yr~adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
|+-||.-|+.+|.= -+.+|.++||....|- ++.+.++. .+ ..++|+||..||+|...
T Consensus 207 DTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh----Ak---------------~A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 207 DTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH----AK---------------SANVPIVVAINKIDKPG 267 (683)
T ss_pred cCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH----HH---------------hcCCCEEEEEeccCCCC
Confidence 55577777777752 3457889999988874 45544321 11 23599999999999765
Q ss_pred CCCCccCCccHHHHHHHHHHHcCCCCeee----cCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 88 KEGTRGSSGNLVDAARQWVEKQGLLPSSE----ELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 88 ~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E----e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
.+. +...+-.-.+|+ . .| ++.+.+ +||++|+|++..-+.+.
T Consensus 268 a~p---------ekv~~eL~~~gi-~-~E~~GGdVQvip---------iSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 268 ANP---------EKVKRELLSQGI-V-VEDLGGDVQVIP---------ISALTGENLDLLEEAIL 312 (683)
T ss_pred CCH---------HHHHHHHHHcCc-c-HHHcCCceeEEE---------eecccCCChHHHHHHHH
Confidence 421 333222223333 0 11 444555 99999999976665554
No 284
>PLN00023 GTP-binding protein; Provisional
Probab=95.56 E-value=0.0052 Score=58.32 Aligned_cols=31 Identities=87% Similarity=1.502 Sum_probs=26.1
Q ss_pred CCcccccccccccCCCCCCCcccccccCCcE
Q 025248 1 MFWKERERENKELNGGPPTGQVRVLVVGDSG 31 (255)
Q Consensus 1 ~~w~~~~~~~~~~~g~~~~gq~r~Yyr~adg 31 (255)
|||++++++++|++|.+++++.++.+.|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~iKIVLLGdsG 31 (334)
T PLN00023 1 MFWRDRERENKEQNGGPPCGQVRVLVVGDSG 31 (334)
T ss_pred CccccccccccccccCCCccceEEEEECCCC
Confidence 9999999999999999999998765555443
No 285
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.52 E-value=0.055 Score=39.04 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=27.6
Q ss_pred CcEEEEEEECCChhh--HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCC
Q 025248 29 DSGVIFVHDLSQRRT--KTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 84 (255)
Q Consensus 29 adgvIlVyDvT~~~S--fe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~D 84 (255)
.++|+|++|+|..-. .+.=...+++|+.. -.+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-------------F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-------------FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-------------TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-------------cCCCCEEEEEeccC
Confidence 467999999998764 44444777788774 12489999999998
No 286
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.051 Score=55.69 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=64.7
Q ss_pred ccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 23 RVLVV--GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 23 r~Yyr--~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
|.|.. ..|++|-|.|.+|-+.=- ..--++.+. .+|++++-|++|...+.+-. -
T Consensus 74 r~~ll~~~~D~ivnVvDAtnLeRnL---yltlQLlE~---------------g~p~ilaLNm~D~A~~~Gi~-------I 128 (653)
T COG0370 74 RDFLLEGKPDLIVNVVDATNLERNL---YLTLQLLEL---------------GIPMILALNMIDEAKKRGIR-------I 128 (653)
T ss_pred HHHHhcCCCCEEEEEcccchHHHHH---HHHHHHHHc---------------CCCeEEEeccHhhHHhcCCc-------c
Confidence 44543 469999999999865422 233344542 28899999999998874433 3
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
+..++.+.+|+ +... ++|++|+|++|...++.+..-
T Consensus 129 D~~~L~~~LGv-PVv~---------------tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 129 DIEKLSKLLGV-PVVP---------------TVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred cHHHHHHHhCC-CEEE---------------EEeecCCCHHHHHHHHHHhcc
Confidence 46678889997 8888 999999998888877776443
No 287
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=95.43 E-value=0.012 Score=60.86 Aligned_cols=52 Identities=19% Similarity=0.049 Sum_probs=35.7
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
+.+...++.+|++|+|+|..+.-..+....|.. +.+ ..+|++||.||+|...
T Consensus 101 ~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~---------------~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 101 GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK---------------ENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH---------------cCCCEEEEEEChhccc
Confidence 356678999999999999987533333223322 222 1267889999999864
No 288
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.34 E-value=0.1 Score=48.97 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=56.8
Q ss_pred ccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
+.+.|-+|+|+.+.+++ +...|.+++--+... .+.-|||.||+||.+.+... .++...
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---------------gi~pvIvlnK~DL~~~~~~~------~~~~~~ 135 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---------------GIEPVIVLNKIDLLDDEEAA------VKELLR 135 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---------------CCcEEEEEEccccCcchHHH------HHHHHH
Confidence 44566677788888776 667777777554432 26667778999999773211 023444
Q ss_pred HHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
+.+..|. ..+. +||+++.++++....+-.
T Consensus 136 ~y~~~gy-~v~~---------------~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 136 EYEDIGY-PVLF---------------VSAKNGDGLEELAELLAG 164 (301)
T ss_pred HHHhCCe-eEEE---------------ecCcCcccHHHHHHHhcC
Confidence 5566675 6666 999999777666655443
No 289
>COG0218 Predicted GTPase [General function prediction only]
Probab=95.28 E-value=0.09 Score=46.69 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=52.5
Q ss_pred CcEEEEEEECCChhhHHHH--HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 29 DSGVIFVHDLSQRRTKTSL--QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 29 adgvIlVyDvT~~~Sfe~l--~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
-.+++++.|.-..-.-.+. -.|+.+ ..+|++||.||+|......+ .......+
T Consensus 107 L~~vvlliD~r~~~~~~D~em~~~l~~------------------~~i~~~vv~tK~DKi~~~~~-------~k~l~~v~ 161 (200)
T COG0218 107 LKGVVLLIDARHPPKDLDREMIEFLLE------------------LGIPVIVVLTKADKLKKSER-------NKQLNKVA 161 (200)
T ss_pred heEEEEEEECCCCCcHHHHHHHHHHHH------------------cCCCeEEEEEccccCChhHH-------HHHHHHHH
Confidence 4567888887655444332 244322 23899999999998765211 13345555
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
+..++ ..--+.+++- .|+..+.|++++-..|+..+.
T Consensus 162 ~~l~~-~~~~~~~~~~---------~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 162 EELKK-PPPDDQWVVL---------FSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HHhcC-CCCccceEEE---------EecccccCHHHHHHHHHHHhh
Confidence 55554 1111111222 888888888888888777654
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.26 E-value=0.18 Score=47.38 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=15.0
Q ss_pred CCCcEEEEEeCCCCCCC
Q 025248 72 LPVPYVVIGNKADVAAK 88 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~ 88 (255)
.+.|+|||-||+|+.+.
T Consensus 180 tklp~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 180 TKLPFIVVFNKTDVSDS 196 (366)
T ss_pred ccCCeEEEEeccccccc
Confidence 45999999999999876
No 291
>PRK12739 elongation factor G; Reviewed
Probab=95.15 E-value=0.037 Score=56.93 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=42.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+..+ .+.+...++.+|++|+|.|.++...-+...-| ..+... .+|+||+.|
T Consensus 77 liDTPG~~~f-------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~-~~~~~~---------------~~p~iv~iN 133 (691)
T PRK12739 77 IIDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVW-RQADKY---------------GVPRIVFVN 133 (691)
T ss_pred EEcCCCHHHH-------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHH-HHHHHc---------------CCCEEEEEE
Confidence 5666665421 12456678999999999999876544433222 233332 278999999
Q ss_pred CCCCCCC
Q 025248 82 KADVAAK 88 (255)
Q Consensus 82 K~DL~~~ 88 (255)
|+|+...
T Consensus 134 K~D~~~~ 140 (691)
T PRK12739 134 KMDRIGA 140 (691)
T ss_pred CCCCCCC
Confidence 9999854
No 292
>PLN03127 Elongation factor Tu; Provisional
Probab=95.14 E-value=0.068 Score=52.47 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=29.0
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCC
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAK 88 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~ 88 (255)
..+|++|||.|.++...-+. ...+..+.. ..+| +|||.||+|+.+.
T Consensus 146 ~~aD~allVVda~~g~~~qt-~e~l~~~~~---------------~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 146 AQMDGGILVVSAPDGPMPQT-KEHILLARQ---------------VGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred hhCCEEEEEEECCCCCchhH-HHHHHHHHH---------------cCCCeEEEEEEeeccCCH
Confidence 46899999999876532221 222223333 1278 5788999999753
No 293
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=94.97 E-value=0.059 Score=52.78 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=51.8
Q ss_pred cccCCcEEEEEEECCChh---hH----HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCc
Q 025248 25 LVVGDSGVIFVHDLSQRR---TK----TSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSG 96 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~---Sf----e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~ 96 (255)
-...+|++|||.|.+... .| +....|. .+.. ..+| +||+.||+|+...+-..-...
T Consensus 105 g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~---------------~gi~~iiv~vNKmD~~~~~~~~~~~~ 168 (446)
T PTZ00141 105 GTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT---------------LGVKQMIVCINKMDDKTVNYSQERYD 168 (446)
T ss_pred hhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH---------------cCCCeEEEEEEccccccchhhHHHHH
Confidence 356899999999998642 11 1111232 2222 1265 678999999532100111122
Q ss_pred cHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHH
Q 025248 97 NLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 142 (255)
Q Consensus 97 ~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e 142 (255)
.+.++..++..+.++. .+.+|++. +||++|.|+.+
T Consensus 169 ~i~~~i~~~l~~~g~~--~~~~~~ip---------iSa~~g~ni~~ 203 (446)
T PTZ00141 169 EIKKEVSAYLKKVGYN--PEKVPFIP---------ISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHHHHhcCCC--cccceEEE---------eecccCCCccc
Confidence 3345566666666541 13466666 99999999854
No 294
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.73 E-value=0.12 Score=43.25 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=41.4
Q ss_pred CcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 74 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 74 iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
-|+|=|.+|+||..+ ..| +..++|..+-|..+.|+ +|+.+..+|++.+..|.
T Consensus 91 k~vIgvVTK~DLaed--~dI------~~~~~~L~eaGa~~IF~---------------~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 91 KKVIGVVTKADLAED--ADI------SLVKRWLREAGAEPIFE---------------TSAVDNQGVEELVDYLA 142 (148)
T ss_pred cceEEEEecccccch--HhH------HHHHHHHHHcCCcceEE---------------EeccCcccHHHHHHHHH
Confidence 458889999999954 233 45788888889878888 99999988888777664
No 295
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.15 Score=47.50 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=32.6
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 30 SGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 30 dgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
.++++|||++....+..++.|+....-+ .- -.++.||||+|...
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdin-------------sf-dillcignkvdrvp 123 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDIN-------------SF-DILLCIGNKVDRVP 123 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhccccccc-------------cc-hhheeccccccccc
Confidence 4589999999999999999998643322 10 12577899999643
No 296
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.035 Score=53.06 Aligned_cols=89 Identities=16% Similarity=0.255 Sum_probs=58.3
Q ss_pred cEEEEEEECCC----hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 30 SGVIFVHDLSQ----RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 30 dgvIlVyDvT~----~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
||+|||.+.+. +++-+++... +|.. - --+|+|-||+||...+.-.-.+ ++..+|
T Consensus 111 DgAlLvIaANEpcPQPQT~EHl~Al--eIig--------------i--k~iiIvQNKIDlV~~E~AlE~y----~qIk~F 168 (415)
T COG5257 111 DGALLVIAANEPCPQPQTREHLMAL--EIIG--------------I--KNIIIVQNKIDLVSRERALENY----EQIKEF 168 (415)
T ss_pred cceEEEEecCCCCCCCchHHHHHHH--hhhc--------------c--ceEEEEecccceecHHHHHHHH----HHHHHH
Confidence 67999998874 4666664321 2322 1 2389999999998763111112 334444
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
.+- .+.|.-|+++ +||..+.|++..++.+.+.+-.
T Consensus 169 vkG----t~Ae~aPIIP---------iSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 169 VKG----TVAENAPIIP---------ISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred hcc----cccCCCceee---------ehhhhccCHHHHHHHHHHhCCC
Confidence 432 5567789998 9999999998888877776643
No 297
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.44 E-value=0.065 Score=45.84 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=28.2
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHH-HHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 30 SGVIFVHDLSQRRTKTSLQKWAVEI-ATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 30 dgvIlVyDvT~~~Sfe~l~~Wl~ei-~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
|+|++|.|..++.+-.+ ..+.+.+ .. ..+.|+|+|.||+||.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~--------------~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQA--------------GGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhc--------------cCCCCEEEEEehhhcCCH
Confidence 68999999988643322 1222221 11 123789999999999754
No 298
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=94.29 E-value=0.2 Score=49.78 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=43.1
Q ss_pred CCcEEEEEeCCCCCCCCCCc--c---CCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHH
Q 025248 73 PVPYVVIGNKADVAAKEGTR--G---SSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 147 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~--V---s~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l 147 (255)
.+||+||.+|+|....-.+. - ..+-+....+.+|-++|. ..+. ||+++..|++-....|
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~y---------------ts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIY---------------TSVKEEKNLDLLYKYI 259 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEE---------------eeccccccHHHHHHHH
Confidence 48999999999975321111 1 112233557888889997 6666 9999998887666665
Q ss_pred HHHHH
Q 025248 148 FRMLI 152 (255)
Q Consensus 148 ~~~li 152 (255)
++.+.
T Consensus 260 ~h~l~ 264 (472)
T PF05783_consen 260 LHRLY 264 (472)
T ss_pred HHHhc
Confidence 55553
No 299
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=93.54 E-value=0.42 Score=39.92 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=49.2
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
...+..+|.+|+|...+ ..+...+..+++.+.+. ++++.+|.||+|.... ..+++
T Consensus 109 ~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---------------~~~~~vV~N~~~~~~~---------~~~~~ 163 (179)
T cd03110 109 IASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---------------GIPVGVVINKYDLNDE---------IAEEI 163 (179)
T ss_pred HHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---------------CCCEEEEEeCCCCCcc---------hHHHH
Confidence 34568899999999877 55777788887776652 2568899999996533 11667
Q ss_pred HHHHHHcCCCCeee
Q 025248 103 RQWVEKQGLLPSSE 116 (255)
Q Consensus 103 ~~~a~~~gl~~~~E 116 (255)
.++++++|+ +++-
T Consensus 164 ~~~~~~~~~-~vl~ 176 (179)
T cd03110 164 EDYCEEEGI-PILG 176 (179)
T ss_pred HHHHHHcCC-CeEE
Confidence 888888886 5554
No 300
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.53 E-value=0.078 Score=47.08 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=53.0
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
+|+-+.+.-|+|.|++.-+-. -.+ ++|+-.. -=+||.||.||.+.-+ .+. +.+.
T Consensus 113 sp~L~d~~~v~VidvteGe~~----------P~K---------~gP~i~~-aDllVInK~DLa~~v~--~dl----evm~ 166 (202)
T COG0378 113 SPDLGDHLRVVVIDVTEGEDI----------PRK---------GGPGIFK-ADLLVINKTDLAPYVG--ADL----EVMA 166 (202)
T ss_pred CcchhhceEEEEEECCCCCCC----------ccc---------CCCceeE-eeEEEEehHHhHHHhC--ccH----HHHH
Confidence 466667778888888755321 111 0232222 2378899999997633 222 4455
Q ss_pred HHHHHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 104 QWVEKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 104 ~~a~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
+-+++.+ -.++++ +|+|+|.|+++.+.++-..
T Consensus 167 ~da~~~np~~~ii~---------------~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 167 RDAKEVNPEAPIIF---------------TNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHhCCCCCEEE---------------EeCCCCcCHHHHHHHHHhh
Confidence 5555554 235666 9999998888887766543
No 301
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.43 E-value=0.36 Score=46.79 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=62.1
Q ss_pred CcccccccCC---cEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCC
Q 025248 20 GQVRVLVVGD---SGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS 95 (255)
Q Consensus 20 gq~r~Yyr~a---dgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~ 95 (255)
+.+|..+-+| |..|+|.|++.-.--+... -.+-++.. -..|||.||+|+..+..|.-.
T Consensus 82 sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----------------~klvvvinkid~lpE~qr~sk- 143 (522)
T KOG0461|consen 82 SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----------------KKLVVVINKIDVLPENQRASK- 143 (522)
T ss_pred HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----------------cceEEEEeccccccchhhhhH-
Confidence 3445555554 5579999998654333322 12222221 236888899998877544422
Q ss_pred ccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 96 GNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 96 ~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
+.+-+....+.+....|-+..|+.+ +||+.|.--++.+.++...|-.+.
T Consensus 144 --i~k~~kk~~KtLe~t~f~g~~PI~~---------vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 144 --IEKSAKKVRKTLESTGFDGNSPIVE---------VSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred --HHHHHHHHHHHHHhcCcCCCCceeE---------EecCCCccchhHHHHHHHHHHHhh
Confidence 2233334444443333444567777 999999888888888776554443
No 302
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.71 E-value=0.49 Score=42.86 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=46.0
Q ss_pred cccCCCCCCC-ccccccc---CCcEEEEEEECC-ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCC
Q 025248 11 KELNGGPPTG-QVRVLVV---GDSGVIFVHDLS-QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 85 (255)
Q Consensus 11 ~~~~g~~~~g-q~r~Yyr---~adgvIlVyDvT-~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL 85 (255)
.|.-||+... +.-.||. .+-|+|||.|-. ...-...+..++..+.-... -....+|++++.||.|+
T Consensus 87 VD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~---------~~~~~~~vLIaCNKqDl 157 (238)
T KOG0090|consen 87 VDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSR---------VKKNKPPVLIACNKQDL 157 (238)
T ss_pred EeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhc---------cccCCCCEEEEecchhh
Confidence 4555666432 2224676 688999999854 45556667777777776421 01345899999999999
Q ss_pred CCC
Q 025248 86 AAK 88 (255)
Q Consensus 86 ~~~ 88 (255)
...
T Consensus 158 ~tA 160 (238)
T KOG0090|consen 158 FTA 160 (238)
T ss_pred hhc
Confidence 754
No 303
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=92.49 E-value=0.23 Score=48.62 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=56.6
Q ss_pred CCcEEEEEEECCChh---hHH--HHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 28 GDSGVIFVHDLSQRR---TKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 28 ~adgvIlVyDvT~~~---Sfe--~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
.||++|||.|..+.+ .|. ...+..-.+.... +. --+||+.||.|+.+. ++-..++++.+.
T Consensus 108 qAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl---------Gi----~~lIVavNKMD~v~w--de~rf~ei~~~v 172 (428)
T COG5256 108 QADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL---------GI----KQLIVAVNKMDLVSW--DEERFEEIVSEV 172 (428)
T ss_pred hccEEEEEEECCCCccccccccCCchhHHHHHHHhc---------CC----ceEEEEEEccccccc--CHHHHHHHHHHH
Confidence 589999999998763 221 1112222233321 11 238899999999876 444455556666
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHH
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 144 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f 144 (255)
..+.+..|..+ .++++++ +||..|.|+.+--
T Consensus 173 ~~l~k~~G~~~--~~v~FIP---------iSg~~G~Nl~~~s 203 (428)
T COG5256 173 SKLLKMVGYNP--KDVPFIP---------ISGFKGDNLTKKS 203 (428)
T ss_pred HHHHHHcCCCc--cCCeEEe---------cccccCCcccccC
Confidence 66776766521 1466666 9999999986543
No 304
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.38 E-value=0.64 Score=44.65 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=67.5
Q ss_pred ccccCCcEEEEEEECCChh----------hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCcc
Q 025248 24 VLVVGDSGVIFVHDLSQRR----------TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRG 93 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~----------Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~V 93 (255)
.+|.++++||||.++++-+ .+....+.++.|.++. .-.++++||..||.||-.+....+
T Consensus 214 hcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~-----------~F~~tsiiLFLNK~DLFeEKi~~~ 282 (354)
T KOG0082|consen 214 HCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK-----------WFANTSIILFLNKKDLFEEKIKKV 282 (354)
T ss_pred HhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc-----------ccccCcEEEEeecHHHHHHHhccC
Confidence 5899999999999998642 2333345666666632 234589999999999865421111
Q ss_pred C---------CccHHHHHHHHHHHc----CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 94 S---------SGNLVDAARQWVEKQ----GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 94 s---------~~~l~e~a~~~a~~~----gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
. ..+-.+++..+.+.. .-..- ..+.+-. |+|.+-.+|+.+|..+...|+.+-.
T Consensus 283 ~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~-k~iy~h~---------T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 283 PLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKD-KKIYVHF---------TCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred chhhhCcCCCCCCChHHHHHHHHHHHHHHhcccC-CcceEEE---------EeeccHHHHHHHHHHHHHHHHHHHH
Confidence 0 001113444433321 10000 1222222 8999999999999999999887643
No 305
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=92.18 E-value=0.22 Score=45.69 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=26.4
Q ss_pred CcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee
Q 025248 74 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE 116 (255)
Q Consensus 74 iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E 116 (255)
+|+|+|+||+|+....... .+.+...+.++.+++ .++.
T Consensus 144 v~vi~VinK~D~l~~~e~~----~~k~~i~~~l~~~~i-~~~~ 181 (276)
T cd01850 144 VNIIPVIAKADTLTPEELK----EFKQRIMEDIEEHNI-KIYK 181 (276)
T ss_pred CCEEEEEECCCcCCHHHHH----HHHHHHHHHHHHcCC-ceEC
Confidence 8999999999986531111 233667788888886 5665
No 306
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=91.95 E-value=0.47 Score=45.95 Aligned_cols=53 Identities=17% Similarity=0.070 Sum_probs=39.4
Q ss_pred cEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHH
Q 025248 75 PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 142 (255)
Q Consensus 75 PiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e 142 (255)
-++|..||+||.+- .+-..+.++++-..|++++|+... -+++ +||..|.||-.
T Consensus 141 hvvvAVNKmDLvdy--~e~~F~~I~~dy~~fa~~L~~~~~----~~IP---------iSAl~GDNV~~ 193 (431)
T COG2895 141 HVVVAVNKMDLVDY--SEEVFEAIVADYLAFAAQLGLKDV----RFIP---------ISALLGDNVVS 193 (431)
T ss_pred EEEEEEeeeccccc--CHHHHHHHHHHHHHHHHHcCCCcc----eEEe---------chhccCCcccc
Confidence 37888999999987 455556677888899999987321 2233 99999998843
No 307
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=91.90 E-value=0.59 Score=45.89 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=20.5
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHhccCC
Q 025248 132 AAAKEARYDKEAVMKFFRMLIRRRYFSD 159 (255)
Q Consensus 132 tSAk~g~nv~e~f~~l~~~li~~~~~s~ 159 (255)
+|+-+|.++ +.++++|..|-+++...+
T Consensus 319 tSsVTg~Gl-dlL~e~f~~Lp~rr~~~d 345 (527)
T COG5258 319 TSSVTGEGL-DLLDEFFLLLPKRRRWDD 345 (527)
T ss_pred EecccCccH-HHHHHHHHhCCcccccCC
Confidence 999999998 567788877777664333
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.81 E-value=0.27 Score=46.00 Aligned_cols=55 Identities=7% Similarity=-0.083 Sum_probs=35.0
Q ss_pred CcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHc-CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 74 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 74 iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~-gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
..-+||.||+||.+.. ... + +...+..++. ...+.+. +||++|.|+++.+++|..
T Consensus 231 ~ADIVVLNKiDLl~~~--~~d---l-e~~~~~lr~lnp~a~I~~---------------vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYL--NFD---V-EKCIACAREVNPEIEIIL---------------ISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCccc--HHH---H-HHHHHHHHhhCCCCcEEE---------------EECCCCCCHHHHHHHHHH
Confidence 5679999999997531 101 1 2233333333 2335566 999999998888877765
No 309
>PRK00007 elongation factor G; Reviewed
Probab=91.65 E-value=0.38 Score=49.66 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=39.5
Q ss_pred ccCCCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 12 ELNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 12 ~~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
|.-|+..| +.+..-.+.+|++|||.|.+..-.-+...-|. .+.+. .+|+||+.||+|+...
T Consensus 81 DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~---------------~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 81 DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY---------------KVPRIAFVNKMDRTGA 142 (693)
T ss_pred eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc---------------CCCEEEEEECCCCCCC
Confidence 44444433 22334577899999999988765555444443 33332 2789999999998854
No 310
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=91.47 E-value=0.77 Score=46.28 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=55.1
Q ss_pred EEEEEEECCChh--hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHH
Q 025248 31 GVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK 108 (255)
Q Consensus 31 gvIlVyDvT~~~--Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~ 108 (255)
+|+++.|++..- |.+.--+.++.|.-. -.+-|+|||.||+|+... ..++. -.++..+....
T Consensus 250 aVLYfmDLSe~CGySva~QvkLfhsIKpL-------------FaNK~~IlvlNK~D~m~~--edL~~--~~~~ll~~~~~ 312 (620)
T KOG1490|consen 250 AVLYFMDLSEMCGYSVAAQVKLYHSIKPL-------------FANKVTILVLNKIDAMRP--EDLDQ--KNQELLQTIID 312 (620)
T ss_pred hheeeeechhhhCCCHHHHHHHHHHhHHH-------------hcCCceEEEeecccccCc--cccCH--HHHHHHHHHHh
Confidence 489999999765 333333556666542 234789999999999765 22332 00122223333
Q ss_pred cCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 109 QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 109 ~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
-+..++++ +|+.+-+||-++=...+..|+
T Consensus 313 ~~~v~v~~---------------tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 313 DGNVKVVQ---------------TSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ccCceEEE---------------ecccchhceeeHHHHHHHHHH
Confidence 34347788 999999988765555555554
No 311
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=91.44 E-value=0.78 Score=48.21 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=70.2
Q ss_pred ccCCCCCCCcccccc-cCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC-
Q 025248 12 ELNGGPPTGQVRVLV-VGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA- 86 (255)
Q Consensus 12 ~~~g~~~~gq~r~Yy-r~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~- 86 (255)
|.-||+.|.-.|... .-||.+|||.||.. +.+.+++. .++ ..++|+||..||+|..
T Consensus 546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR---------------~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLR---------------MRKTPFIVALNKIDRLY 606 (1064)
T ss_pred cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHH---------------hcCCCeEEeehhhhhhc
Confidence 455777777777644 46899999999974 45555532 222 2459999999999953
Q ss_pred CCCCCccCCccHH-------------------HHHHHHHHHcCC--CCeee------cCCCCCCCCCCCCcceeeecCCC
Q 025248 87 AKEGTRGSSGNLV-------------------DAARQWVEKQGL--LPSSE------ELPLTESFPGGGGLIAAAKEARY 139 (255)
Q Consensus 87 ~~~~r~Vs~~~l~-------------------e~a~~~a~~~gl--~~~~E------e~p~~e~~~~~~~~~tSAk~g~n 139 (255)
+. .......+. ....+|++ +|| ..|++ -+.+.+ |||.+|.|
T Consensus 607 gw--k~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaE-QgLN~~LyykNk~~~~~vsiVP---------TSA~sGeG 674 (1064)
T KOG1144|consen 607 GW--KSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAE-QGLNAELYYKNKEMGETVSIVP---------TSAISGEG 674 (1064)
T ss_pred cc--ccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cccchhheeecccccceEEeee---------cccccCCC
Confidence 21 111110011 11122332 333 12332 233444 99999999
Q ss_pred HHHHHHHHHH----HHHHHhccCCCCCC
Q 025248 140 DKEAVMKFFR----MLIRRRYFSDEMPA 163 (255)
Q Consensus 140 v~e~f~~l~~----~li~~~~~s~~~~~ 163 (255)
|-..+..|+. ++.++..|.++..+
T Consensus 675 ipdLl~llv~ltQk~m~~kl~y~~ev~c 702 (1064)
T KOG1144|consen 675 IPDLLLLLVQLTQKTMVEKLAYVDEVQC 702 (1064)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhheee
Confidence 9988887775 34455555555544
No 312
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=91.44 E-value=0.22 Score=47.52 Aligned_cols=55 Identities=20% Similarity=0.078 Sum_probs=39.2
Q ss_pred ccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 22 VRVLVVGDSGVIFVHDLSQR----------RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~----------~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
.-.||.++++||||.++++- ..+......+.+|.++. --.++|+||+.||.|+-.
T Consensus 253 W~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~-----------~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 253 WIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP-----------WFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp GGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG-----------GGTTSEEEEEEE-HHHHH
T ss_pred HHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc-----------ccccCceEEeeecHHHHH
Confidence 44789999999999998742 33555556667776632 234589999999999754
No 313
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.38 E-value=0.79 Score=43.39 Aligned_cols=94 Identities=23% Similarity=0.149 Sum_probs=53.6
Q ss_pred Ccccc-cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccH
Q 025248 20 GQVRV-LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 98 (255)
Q Consensus 20 gq~r~-Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l 98 (255)
||..+ -..-+|.+|+|-=----+..+-++.=+-|+. =|+|.||.|..+.+
T Consensus 155 GQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------------------Di~vINKaD~~~A~--------- 205 (323)
T COG1703 155 GQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------------------DIIVINKADRKGAE--------- 205 (323)
T ss_pred CcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------------------heeeEeccChhhHH---------
Confidence 35443 3445777777754444444444443333332 37788999965441
Q ss_pred HHHHHHHHHHcCCCC--eee---cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 99 VDAARQWVEKQGLLP--SSE---ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 99 ~e~a~~~a~~~gl~~--~~E---e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
...+++...+.+.. +-+ ..|+.. |||.+|+|+++.++.+.++.-
T Consensus 206 -~a~r~l~~al~~~~~~~~~~~W~ppv~~---------t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 206 -KAARELRSALDLLREVWRENGWRPPVVT---------TSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred -HHHHHHHHHHHhhcccccccCCCCceeE---------eeeccCCCHHHHHHHHHHHHH
Confidence 22333333333322 222 456666 999999998888877776553
No 314
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=91.37 E-value=1.3 Score=40.43 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=33.0
Q ss_pred cCCcEEEEEEECCChhhH-------H----HHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 27 VGDSGVIFVHDLSQRRTK-------T----SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sf-------e----~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+-.+|||++.|+.+--.- . .+..-+.++.+.. +..+||.||.||+|+...
T Consensus 24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~l------------g~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTL------------GVRLPVYVVFTKCDLLPG 84 (266)
T ss_pred CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHh------------CCCCCeEeeeECCCcccC
Confidence 456999999998743222 2 1223344444432 456999999999998754
No 315
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=90.68 E-value=0.91 Score=40.11 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=29.6
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCC
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAK 88 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~ 88 (255)
.+.+|++|+|.|.+........ ..+..+... + +| +++|.||+|+...
T Consensus 101 ak~aDvVllviDa~~~~~~~~~-~i~~~l~~~-------------g--~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 101 AKVADLVLLLIDASFGFEMETF-EFLNILQVH-------------G--FPRVMGVLTHLDLFKK 148 (225)
T ss_pred HHhcCEEEEEEecCcCCCHHHH-HHHHHHHHc-------------C--CCeEEEEEeccccCCc
Confidence 4678999999999865443322 233333332 1 56 4559999998643
No 316
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=90.15 E-value=1.5 Score=43.21 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCcEEEEEEECC---ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 28 GDSGVIFVHDLS---QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 28 ~adgvIlVyDvT---~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
+.|++|||.|.+ ...+.+.|. +... ..++ .++|.||+|+.+.. . +.+...
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~-----iLdl--------------lgi~~giivltk~D~~d~~--r-----~e~~i~ 126 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLL-----ILDL--------------LGIKNGIIVLTKADRVDEA--R-----IEQKIK 126 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHH-----HHHh--------------cCCCceEEEEeccccccHH--H-----HHHHHH
Confidence 678899999995 445555432 2221 1122 58999999988762 1 113333
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++..... +++.+++. +||++|+||++.=+.+...+
T Consensus 127 ~Il~~l~----l~~~~i~~---------~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 127 QILADLS----LANAKIFK---------TSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred HHHhhcc----cccccccc---------cccccCCCHHHHHHHHHHhh
Confidence 3333332 44566666 99999999998888887766
No 317
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=89.39 E-value=0.73 Score=42.46 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=48.5
Q ss_pred CcccccccccccCCCCCCC-cccccccCCcEEEEEEECCChhhHHHHH---HHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKELNGGPPTG-QVRVLVVGDSGVIFVHDLSQRRTKTSLQ---KWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~g-q~r~Yyr~adgvIlVyDvT~~~Sfe~l~---~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
.||=+|+++.--+ -+. |-..-|++.+++|+|||+..++--..+. +-++.+.++ .....+.
T Consensus 57 lwDcGgqe~fmen---~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~-------------SP~AkiF 120 (295)
T KOG3886|consen 57 LWDCGGQEEFMEN---YLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN-------------SPEAKIF 120 (295)
T ss_pred hhccCCcHHHHHH---HHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc-------------CCcceEE
Confidence 4787777743311 011 2235789999999999999886444443 444555554 3346788
Q ss_pred EEEeCCCCCCCCCCc
Q 025248 78 VIGNKADVAAKEGTR 92 (255)
Q Consensus 78 LVGNK~DL~~~~~r~ 92 (255)
+...|.||.....|.
T Consensus 121 ~l~hKmDLv~~d~r~ 135 (295)
T KOG3886|consen 121 CLLHKMDLVQEDARE 135 (295)
T ss_pred EEEeechhcccchHH
Confidence 888999998764333
No 318
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=88.28 E-value=0.4 Score=50.65 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=40.7
Q ss_pred ccCCCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 12 ELNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 12 ~~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
|.-||.-| +.+..-.+.+|++|+|.|.+..-.-....-|.. +.. .++|+||+.||+|+.
T Consensus 104 DtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~---------------~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---------------ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH---------------CCCCEEEEEECCccc
Confidence 55566655 444445688999999999997755444444433 332 238999999999987
No 319
>COG1161 Predicted GTPases [General function prediction only]
Probab=88.23 E-value=0.83 Score=42.92 Aligned_cols=48 Identities=23% Similarity=0.184 Sum_probs=34.7
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
..+....|.||-|.|+-++.+..+ .-+.++.. +.+.++|.||+||.+.
T Consensus 29 ~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~----------------~k~~i~vlNK~DL~~~ 76 (322)
T COG1161 29 KEVLKSVDVVVEVVDARDPLGTRN--PELERIVK----------------EKPKLLVLNKADLAPK 76 (322)
T ss_pred HHhcccCCEEEEEEeccccccccC--ccHHHHHc----------------cCCcEEEEehhhcCCH
Confidence 456778999999999999987654 22333332 1345999999999976
No 320
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=88.12 E-value=0.86 Score=45.62 Aligned_cols=112 Identities=11% Similarity=0.070 Sum_probs=62.0
Q ss_pred CCCCcccc--cccCCcEEEEEEEC--CChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCc
Q 025248 17 PPTGQVRV--LVVGDSGVIFVHDL--SQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTR 92 (255)
Q Consensus 17 ~~~gq~r~--Yyr~adgvIlVyDv--T~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~ 92 (255)
+..|-.|. =.+.||.+++|+|. ++-++-..+..-+.....-.... .+....-+++++.||+||...- +.
T Consensus 335 E~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~------~~~~~~~~~i~~~nk~D~~s~~-~~ 407 (531)
T KOG1191|consen 335 EALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVI------VNKMEKQRIILVANKSDLVSKI-PE 407 (531)
T ss_pred HHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEE------eccccccceEEEechhhccCcc-cc
Confidence 33444443 46789999999999 55555444444444443311000 0112347899999999998651 11
Q ss_pred cCCccHHHHHHHHHHHcC---CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 93 GSSGNLVDAARQWVEKQG---LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 93 Vs~~~l~e~a~~~a~~~g---l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
... ....+-...+ +....+ +|+++++++++....+...+....
T Consensus 408 ~~~-----~~~~~~~~~~~~~~~i~~~---------------vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 408 MTK-----IPVVYPSAEGRSVFPIVVE---------------VSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred ccC-----CceeccccccCcccceEEE---------------eeechhhhHHHHHHHHHHHHHHhh
Confidence 111 0001111111 113345 999999888777777776665543
No 321
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=87.80 E-value=1.4 Score=34.05 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=27.0
Q ss_pred cccCCcEEEEEEECCChh--hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeC
Q 025248 25 LVVGDSGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 82 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~--Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK 82 (255)
.+..+|++|+|+|.++.. +..++..|+ . . . .|+++|.||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l---~-~-------------~--~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILREL---K-N-------------K--KPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHH---H-T-------------T--SEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHH---h-c-------------C--CCEEEEEcC
Confidence 347899999999987742 333443444 3 2 1 789999998
No 322
>PRK07560 elongation factor EF-2; Reviewed
Probab=87.43 E-value=0.56 Score=48.73 Aligned_cols=60 Identities=20% Similarity=0.107 Sum_probs=40.2
Q ss_pred ccCCCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 12 ELNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 12 ~~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
|.-|+..| +.+...++.+|++|+|.|....-.-+...-|.. +.+. + +|+||+.||+|+..
T Consensus 93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~-------------~--~~~iv~iNK~D~~~ 153 (731)
T PRK07560 93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE-------------R--VKPVLFINKVDRLI 153 (731)
T ss_pred cCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc-------------C--CCeEEEEECchhhc
Confidence 55566544 455567899999999999887654443334432 2221 2 67899999999764
No 323
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=87.21 E-value=1.7 Score=47.64 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=37.4
Q ss_pred cCCcEEEEEEECCChhhH---------HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 27 VGDSGVIFVHDLSQRRTK---------TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sf---------e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+-.||||++.|+.+--+- ..+...+.|+.+.. +..+||.||.+|+|+...
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l------------g~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL------------GARFPVYLVLTKADLLAG 258 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh------------CCCCCEEEEEecchhhcC
Confidence 468999999999865321 34567777777753 456999999999998743
No 324
>PTZ00416 elongation factor 2; Provisional
Probab=86.96 E-value=0.44 Score=50.32 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=39.4
Q ss_pred ccCCCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 12 ELNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 12 ~~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
|.-|+..| +.+..-++.+|++|+|.|.++.-.-+...-| ..+.. .++|+||+.||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---------------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---------------ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---------------cCCCEEEEEEChhhh
Confidence 44455433 4445567899999999999886544443334 33333 127999999999987
No 325
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=86.63 E-value=4.5 Score=40.76 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=62.5
Q ss_pred cccCCCCCCC-cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCC
Q 025248 11 KELNGGPPTG-QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 89 (255)
Q Consensus 11 ~~~~g~~~~g-q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~ 89 (255)
.|.-||.-|| .+.--+.-.|+|+|+.|...--- -.-+--++...+. + .+-|||.||+|..+.
T Consensus 73 vDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~~-------------g--L~PIVVvNKiDrp~A- 135 (603)
T COG1217 73 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALAL-------------G--LKPIVVINKIDRPDA- 135 (603)
T ss_pred ecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHHc-------------C--CCcEEEEeCCCCCCC-
Confidence 4666777664 34456778899999999876321 1111222233332 1 455777899998776
Q ss_pred CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecC------CCHHHHHHHHHHHHHHHh
Q 025248 90 GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEA------RYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 90 ~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g------~nv~e~f~~l~~~li~~~ 155 (255)
|. +.++++.-++.-.++...-.-+.|+.- .||+.| .+-.+.+.-||..|+++.
T Consensus 136 -rp---~~Vvd~vfDLf~~L~A~deQLdFPivY---------AS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 136 -RP---DEVVDEVFDLFVELGATDEQLDFPIVY---------ASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred -CH---HHHHHHHHHHHHHhCCChhhCCCcEEE---------eeccCceeccCccccccchhHHHHHHHHhC
Confidence 33 234455555554454321111223322 455444 233345777777777764
No 326
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=85.38 E-value=4.5 Score=34.35 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=54.6
Q ss_pred ccCCcEEEEEEECCChhhH--HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH----
Q 025248 26 VVGDSGVIFVHDLSQRRTK--TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV---- 99 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sf--e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~---- 99 (255)
..+.|++|||.|+.+ -+- ..+.+++.++... ..-.++|||.||.|..... .+. +..
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~-------------~~~~~~ivv~T~~d~l~~~--~~~--~~~~~~~ 142 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGE-------------KVLDHTIVLFTRGDDLEGG--TLE--DYLENSC 142 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhCh-------------HhHhcEEEEEECccccCCC--cHH--HHHHhcc
Confidence 468999999999987 332 2233444443210 1113578888888865431 111 111
Q ss_pred HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 100 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
...+.+.++++- .|.. + +.... +++.+.++++.++.+-+++.+
T Consensus 143 ~~l~~l~~~c~~-r~~~---f------~~~~~-~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 143 EALKRLLEKCGG-RYVA---F------NNKAK-GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHHHHhCC-eEEE---E------eCCCC-cchhHHHHHHHHHHHHHHHHh
Confidence 334556666553 3322 0 01111 467777888888888777776
No 327
>COG3596 Predicted GTPase [General function prediction only]
Probab=85.33 E-value=0.99 Score=42.26 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=67.8
Q ss_pred CCcccccccc---cccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 1 MFWKEREREN---KELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 1 ~~w~~~~~~~---~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
|+||.+|=+. +|. .---..+-|...+|.++++-|..|+.--....-|. +|... ..+.+++
T Consensus 90 ~lwDtPG~gdg~~~D~---~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~-dVi~~-------------~~~~~~i 152 (296)
T COG3596 90 VLWDTPGLGDGKDKDA---EHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLR-DVIIL-------------GLDKRVL 152 (296)
T ss_pred EEecCCCcccchhhhH---HHHHHHHHHhhhccEEEEeccCCCccccCCHHHHH-HHHHh-------------ccCceeE
Confidence 4899888543 221 00111345677899999999999887544444444 44432 3337899
Q ss_pred EEEeCCCCCCCC------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKE------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 78 LVGNK~DL~~~~------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++.|.+|..... +..-+. .+.+-.++-++..+- .|.+-.|+.. .|+..+.|+++.+..+++.+
T Consensus 153 ~~VtQ~D~a~p~~~W~~~~~~p~~-a~~qfi~~k~~~~~~-~~q~V~pV~~---------~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 153 FVVTQADRAEPGREWDSAGHQPSP-AIKQFIEEKAEALGR-LFQEVKPVVA---------VSGRLPWGLKELVRALITAL 221 (296)
T ss_pred EEEehhhhhccccccccccCCCCH-HHHHHHHHHHHHHHH-HHhhcCCeEE---------eccccCccHHHHHHHHHHhC
Confidence 999999976431 111111 111111111111110 1111223332 66789989888888888877
Q ss_pred H
Q 025248 152 I 152 (255)
Q Consensus 152 i 152 (255)
.
T Consensus 222 p 222 (296)
T COG3596 222 P 222 (296)
T ss_pred c
Confidence 5
No 328
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=84.64 E-value=3 Score=42.57 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=51.4
Q ss_pred CCcEEEEEEECCChhhHHH---HH---HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTS---LQ---KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~---l~---~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
.||++|||.|.+. ..|+. .. +.+..+.+.. + ---+||+.||.|+.+.. +--..+|+..
T Consensus 278 qaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L-----------g--i~qlivaiNKmD~V~Ws--q~RF~eIk~~ 341 (603)
T KOG0458|consen 278 QADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL-----------G--ISQLIVAINKMDLVSWS--QDRFEEIKNK 341 (603)
T ss_pred ccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc-----------C--cceEEEEeecccccCcc--HHHHHHHHHH
Confidence 4789999999874 33332 21 2222333321 1 13489999999999873 3223344455
Q ss_pred HHHHH-HHcCCCCeee-cCCCCCCCCCCCCcceeeecCCCHHHH
Q 025248 102 ARQWV-EKQGLLPSSE-ELPLTESFPGGGGLIAAAKEARYDKEA 143 (255)
Q Consensus 102 a~~~a-~~~gl~~~~E-e~p~~e~~~~~~~~~tSAk~g~nv~e~ 143 (255)
...|. +..|+ .| ++-+++ ||+.+|+|+-..
T Consensus 342 l~~fL~~~~gf---~es~v~FIP---------iSGl~GeNL~k~ 373 (603)
T KOG0458|consen 342 LSSFLKESCGF---KESSVKFIP---------ISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHhcCc---ccCCcceEe---------cccccCCccccc
Confidence 55555 44453 33 334444 999999887543
No 329
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=84.18 E-value=1.4 Score=35.96 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=35.7
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCC
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 83 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~ 83 (255)
..+..|+..+|++|+|.+.++..+-.....|.+.+... . -.+++|-||+
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------------~--~~~i~V~nk~ 168 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------------K--SRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------------C--SSEEEEEE-G
T ss_pred HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------------C--CeEEEEEcCC
Confidence 34667899999999999999977766666666665542 1 2388999985
No 330
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=84.11 E-value=2.2 Score=38.34 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 28 GDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 28 ~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
..-+++++.|... ...|-+. ++--+.... ..++|.|.|.||+||.+
T Consensus 122 ~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~------------~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 122 GRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIML------------RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp ---EEEEEE-GGG-SSHHHHHHH--HHHHHHHHH------------HHTSEEEEEE--GGGS-
T ss_pred cceEEEEEEecccccChhhHHHH--HHHHHHHHh------------hCCCCEEEeeeccCccc
Confidence 4457888888764 3445332 222221100 12389999999999987
No 331
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=84.08 E-value=3.9 Score=40.69 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=34.3
Q ss_pred cccccCCcEEEEEE-ECC----ChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCC
Q 025248 23 RVLVVGDSGVIFVH-DLS----QRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 85 (255)
Q Consensus 23 r~Yyr~adgvIlVy-DvT----~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL 85 (255)
++.-..++..|+|. |-+ .++.+.... .|+.++++. +.|+|+|.||+|-
T Consensus 139 kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~---------------~kPfiivlN~~dp 192 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL---------------NKPFIILLNSTHP 192 (492)
T ss_pred HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc---------------CCCEEEEEECcCC
Confidence 34444888888887 654 234455544 889888873 3899999999993
No 332
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=83.12 E-value=0.4 Score=44.35 Aligned_cols=87 Identities=20% Similarity=0.107 Sum_probs=47.2
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
..-+|.+++|.--.--+..+.++.=+-|+. =|+|.||+|+...+ ....++
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------------------Di~vVNKaD~~gA~----------~~~~~l 189 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------------------DIFVVNKADRPGAD----------RTVRDL 189 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TTHHHH---------------------SEEEEE--SHHHHH----------HHHHHH
T ss_pred HHhcCeEEEEecCCCccHHHHHhhhhhhhc--------------------cEEEEeCCChHHHH----------HHHHHH
Confidence 445788888877666666655554333432 37778999965441 112222
Q ss_pred HHHcCCCCeee---cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 106 VEKQGLLPSSE---ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 106 a~~~gl~~~~E---e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
...+.+..-.+ ..|+.. |||.++.||++.++.+.++-
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~---------tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLK---------TSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEE---------EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCCEEE---------EEeCCCCCHHHHHHHHHHHH
Confidence 22221110000 235555 99999999999888777643
No 333
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=82.58 E-value=2.4 Score=38.49 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=32.4
Q ss_pred cccccccC-CcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 21 QVRVLVVG-DSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 21 q~r~Yyr~-adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
++..|+++ .+.+++|.|.+.--+=......+.++.. ...++++|.||+|....
T Consensus 154 lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---------------~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 154 MIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---------------QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---------------cCCcEEEEEECCCCCCc
Confidence 45678885 4578889987542221122233333333 12789999999998754
No 334
>PRK09602 translation-associated GTPase; Reviewed
Probab=81.79 E-value=2.3 Score=41.25 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=32.3
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHH-HHHHHHH
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEA-VMKFFRM 150 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~-f~~l~~~ 150 (255)
..|+|+|.||+|+.... +....+.+. +...++. +||+.+.+++++ .+.+++.
T Consensus 217 ~KPvI~VlNK~D~~~~~----------~~l~~i~~~-~~~~vvp---------------ISA~~e~~l~~~l~~~i~~~ 269 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----------ENIERLKEE-KYYIVVP---------------TSAEAELALRRAAKAGLIDY 269 (396)
T ss_pred CCCEEEEEEchhcccch----------HHHHHHHhc-CCCcEEE---------------EcchhhhhHHHHHHHhHHhh
Confidence 48999999999975331 112222222 4335666 999999888773 3444333
No 335
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=81.01 E-value=13 Score=32.60 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVE 107 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~ 107 (255)
..|-|+|+.|++.+.|++.++.=+..+...- ..| .++++++-+..... ..|.. ++..+++.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f---------flG----KVCfl~t~a~~~~~--~sv~~----~~V~kla~ 124 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF---------FLG----KVCFLATNAGRESH--CSVHP----NEVRKLAA 124 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhh---------hcc----ceEEEEcCCCcccc--cccCH----HHHHHHHH
Confidence 4688999999999999999887666665421 122 26667776665554 45666 88999999
Q ss_pred HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 108 KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 108 ~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
.+.+ +++- +=-.. ++....+.+.|++...
T Consensus 125 ~y~~-plL~---------------~~le~----~~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 125 TYNS-PLLF---------------ADLEN----EEGRTSLAQRLLRMLQ 153 (176)
T ss_pred HhCC-CEEE---------------eeccc----chHHHHHHHHHHHHHH
Confidence 9986 5553 22222 2556677777776543
No 336
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=79.81 E-value=2.5 Score=42.72 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=35.0
Q ss_pred cCCcEEEEEEECCChhhHH--HHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 27 VGDSGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe--~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
.-+|.||.+.|.-++--|- .|..++.++..+ .-.+|+.||+||...
T Consensus 173 ErSDivvqIVDARnPllfr~~dLe~Yvke~d~~----------------K~~~LLvNKaDLl~~ 220 (562)
T KOG1424|consen 173 ERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPS----------------KANVLLVNKADLLPP 220 (562)
T ss_pred hhcceEEEEeecCCccccCChhHHHHHhccccc----------------cceEEEEehhhcCCH
Confidence 4689999999999998774 455666665442 447888899999876
No 337
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=77.74 E-value=2 Score=44.70 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=48.0
Q ss_pred CCccc-ccccccccCCCCCCCc-ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 1 MFWKE-RERENKELNGGPPTGQ-VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 1 ~~w~~-~~~~~~~~~g~~~~gq-~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||+. .-=.--|.-||--|.. +..=.|-+||+|+|+|...--.-+.-.-|...... ++|.|+
T Consensus 70 ~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----------------~vp~i~ 133 (697)
T COG0480 70 LFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----------------GVPRIL 133 (697)
T ss_pred EEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----------------CCCeEE
Confidence 46664 2222335556665532 33457789999999999887766665567544332 399999
Q ss_pred EEeCCCCCCC
Q 025248 79 IGNKADVAAK 88 (255)
Q Consensus 79 VGNK~DL~~~ 88 (255)
+.||+|....
T Consensus 134 fiNKmDR~~a 143 (697)
T COG0480 134 FVNKMDRLGA 143 (697)
T ss_pred EEECcccccc
Confidence 9999997654
No 338
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=77.17 E-value=2.4 Score=44.23 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=39.2
Q ss_pred ccCCCCCCC-cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 12 ELNGGPPTG-QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 12 ~~~g~~~~g-q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
|..||-.|. .+..-++-+|||++|+|+-.--++..= ..++.+.+ .+.|++||.||+|..
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq---------------~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ---------------NRLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh---------------ccCcEEEEEehhHHH
Confidence 333444442 233467889999999999988877542 23333332 238999999999953
No 339
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=74.96 E-value=35 Score=30.32 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=55.3
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE-EEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi-iLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.+..||.+|++... +..++..+...+..+.... . ..++++ -+|.|+.+.. +...
T Consensus 137 ~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~---------~--~~~l~i~giv~N~~~~~-------------~~~~ 191 (270)
T PRK13185 137 PLQYADYALIVTAN-DFDSIFAANRIAAAIQAKA---------K--NYKVRLAGVIANRSAGT-------------DLID 191 (270)
T ss_pred hhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhh---------h--ccCCCceEEEEeccChH-------------HHHH
Confidence 35678999998854 5667776666655554321 0 223554 3788997621 4456
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeec--C-----CCHHHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE--A-----RYDKEAVMKFFRMLIR 153 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~--g-----~nv~e~f~~l~~~li~ 153 (255)
++.++++. ..+..+|.-..+........+... . ....+.+..+++++++
T Consensus 192 ~~~~~~g~-~vl~~Ip~~~~i~~A~~~G~pv~~~~~~~~~~~~aa~~~~~la~el~~ 247 (270)
T PRK13185 192 KFNEAVGL-KVLAHVPDLDAIRRSRLKGKTLFEMEETDPGLEEVQNEYLRLAEQLLA 247 (270)
T ss_pred HHHHHcCC-CEEEECCCCcccChHHHcCCcHhhhCcCCccchHHHHHHHHHHHHHHh
Confidence 67777775 444445554444433222222111 1 1133556777777665
No 340
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=73.31 E-value=4.5 Score=39.33 Aligned_cols=94 Identities=22% Similarity=0.239 Sum_probs=55.6
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 29 DSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 29 adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
-||+|||...||- ++-+.|. -.++.+ - --++|..||+|+.++.. -+. =++.+++++
T Consensus 141 MDGaILVVaatDG~MPQTrEHlL----LArQVG------------V--~~ivvfiNKvD~V~d~e-~le--LVEmE~REl 199 (449)
T KOG0460|consen 141 MDGAILVVAATDGPMPQTREHLL----LARQVG------------V--KHIVVFINKVDLVDDPE-MLE--LVEMEIREL 199 (449)
T ss_pred cCceEEEEEcCCCCCcchHHHHH----HHHHcC------------C--ceEEEEEecccccCCHH-HHH--HHHHHHHHH
Confidence 4889999999985 4555432 222321 1 12788899999986521 111 112567788
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHH---HHHHHHHHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDK---EAVMKFFRML 151 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~---e~f~~l~~~l 151 (255)
...+|+. - .++|++. |-..||.+|++-+ +++.+|.+.+
T Consensus 200 Lse~gf~-G-d~~PvI~------GSAL~ALeg~~peig~~aI~kLldav 240 (449)
T KOG0460|consen 200 LSEFGFD-G-DNTPVIR------GSALCALEGRQPEIGLEAIEKLLDAV 240 (449)
T ss_pred HHHcCCC-C-CCCCeee------cchhhhhcCCCccccHHHHHHHHHHH
Confidence 8888752 1 2567765 5557788886554 3444444444
No 341
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=72.67 E-value=6.6 Score=37.60 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=43.0
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 29 DSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 29 adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
.||+|||...+|- .+-+.+. -.++. + +| ++++.||+|+.++. ..- +-+..+.++
T Consensus 99 mDgAILVVsA~dGpmPqTrEHiL----larqv-------------G--vp~ivvflnK~Dmvdd~--ell-elVemEvre 156 (394)
T COG0050 99 MDGAILVVAATDGPMPQTREHIL----LARQV-------------G--VPYIVVFLNKVDMVDDE--ELL-ELVEMEVRE 156 (394)
T ss_pred cCccEEEEEcCCCCCCcchhhhh----hhhhc-------------C--CcEEEEEEecccccCcH--HHH-HHHHHHHHH
Confidence 5889999999984 4554421 12222 2 54 57779999999752 111 112256778
Q ss_pred HHHHcCCCCeeecCCCCC
Q 025248 105 WVEKQGLLPSSEELPLTE 122 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e 122 (255)
+..++++ +- .++|++-
T Consensus 157 LLs~y~f-~g-d~~Pii~ 172 (394)
T COG0050 157 LLSEYGF-PG-DDTPIIR 172 (394)
T ss_pred HHHHcCC-CC-CCcceee
Confidence 8888885 22 2567775
No 342
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=72.19 E-value=22 Score=33.35 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=52.4
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
-..+||.+|+|---| +..+.+++.-++-+.. -.+|..+|.||.++.. .+.++
T Consensus 182 sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~---------------f~ip~~iViNr~~~g~------------s~ie~ 233 (284)
T COG1149 182 SLKGADLAILVTEPT-PFGLHDLKRALELVEH---------------FGIPTGIVINRYNLGD------------SEIEE 233 (284)
T ss_pred hhccCCEEEEEecCC-ccchhHHHHHHHHHHH---------------hCCceEEEEecCCCCc------------hHHHH
Confidence 478999999996554 4566666665544443 2399999999996432 35889
Q ss_pred HHHHcCCCCeeecCCCCCCCCC
Q 025248 105 WVEKQGLLPSSEELPLTESFPG 126 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~ 126 (255)
|+++.|+ +++-++|+-+..|.
T Consensus 234 ~~~e~gi-~il~~IPyd~~i~~ 254 (284)
T COG1149 234 YCEEEGI-PILGEIPYDKDIPE 254 (284)
T ss_pred HHHHcCC-CeeEECCcchhHHH
Confidence 9999997 77777888775444
No 343
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=70.47 E-value=19 Score=36.79 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCee
Q 025248 42 RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSS 115 (255)
Q Consensus 42 ~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~ 115 (255)
+.|.+|.+.++.+++. .+|++|+.||.|+..+. . .+..+++|++.|+ ++.
T Consensus 356 sGl~NL~RHIenvr~F---------------GvPvVVAINKFd~DTe~--E------i~~I~~~c~e~Gv-~va 405 (557)
T PRK13505 356 KGFANLERHIENIRKF---------------GVPVVVAINKFVTDTDA--E------IAALKELCEELGV-EVA 405 (557)
T ss_pred HHHHHHHHHHHHHHHc---------------CCCEEEEEeCCCCCCHH--H------HHHHHHHHHHcCC-CEE
Confidence 3566777777666653 29999999999987551 1 1568899999987 555
No 344
>KOG2484 consensus GTPase [General function prediction only]
Probab=64.68 E-value=11 Score=36.99 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=38.6
Q ss_pred cCCcEEEEEEECCChhhHHH--HHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~--l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
.-+|+||-|.|.-|+.+-.. +..|+ .+. ..+-..|||.||+||.+. +...+
T Consensus 145 e~sDVVleVlDARDPlgtR~~~vE~~V---~~~-------------~gnKkLILVLNK~DLVPr-----------Ev~e~ 197 (435)
T KOG2484|consen 145 EASDVVLEVLDARDPLGTRCPEVEEAV---LQA-------------HGNKKLILVLNKIDLVPR-----------EVVEK 197 (435)
T ss_pred hhhheEEEeeeccCCCCCCChhHHHHH---Hhc-------------cCCceEEEEeehhccCCH-----------HHHHH
Confidence 35899999999999986543 33443 221 112458999999999877 55666
Q ss_pred HHHHc
Q 025248 105 WVEKQ 109 (255)
Q Consensus 105 ~a~~~ 109 (255)
|..-+
T Consensus 198 Wl~YL 202 (435)
T KOG2484|consen 198 WLVYL 202 (435)
T ss_pred HHHHH
Confidence 66543
No 345
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=64.38 E-value=44 Score=30.89 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=58.1
Q ss_pred ccCCcEEEEEEECCChhhH---HHHHHHHHHHHHhCCCCCCCCCCCCCCCCC-cEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTK---TSLQKWAVEIATSGTFSAPLASGGPGGLPV-PYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sf---e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~i-PiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
...||.+|+|... +..++ .++.+.++.+.+. +.++ ++-||.|+.+.. ..
T Consensus 145 ~~~Ad~viVvt~~-e~~sl~~a~~l~k~v~~~~~~-------------~~~v~i~GVV~N~~~~~-------------~~ 197 (296)
T TIGR02016 145 RSLAEEVIVIGSN-DRQSLYVANNICNAVEYFRKL-------------GGRVGLLGLVVNRDDGS-------------GE 197 (296)
T ss_pred hhhCCeEEEEecc-hHHHHHHHHHHHHHHHHHHHc-------------CCCCcceEEEEeCCCCc-------------cH
Confidence 3467888877654 33444 3455655555442 1113 356888998742 34
Q ss_pred HHHHHHHcCCCCeeecCCCCCCCCC--CCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 102 ARQWVEKQGLLPSSEELPLTESFPG--GGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~~e~~~~--~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
++++++++++ +++..||+-+.... .+.-..-+.......++|..+++.++++
T Consensus 198 ~~~~~~~~~i-~vLg~IP~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~ 251 (296)
T TIGR02016 198 AQAFAREVGI-PVLAAIPADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADA 251 (296)
T ss_pred HHHHHHHcCC-CeEEECCCCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHh
Confidence 5778899987 78877887664332 1111111111222567788888888765
No 346
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=62.47 E-value=74 Score=28.24 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=52.2
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
+..||.+|++... +..++..+..-++.+.... . ...++ ..+|.|++|.. ....+
T Consensus 136 l~~aD~vlip~~p-~~~~l~~~~~~~~~i~~~~---------~--~~~l~~~giV~Nr~~~~-------------~~i~~ 190 (267)
T cd02032 136 LNYADYALIVTDN-DFDSIFAANRIAAAVREKA---------K--TYKVRLAGLIANRTDKT-------------DLIDK 190 (267)
T ss_pred hhhcCEEEEEecC-CcccHHHHHHHHHHHHHHh---------h--ccCCceEEEEEeCCCHH-------------HHHHH
Confidence 6679999998765 4445555544444333210 0 12244 34778999831 23455
Q ss_pred HHHHcCCCCeeecCCCCCCCCCC--CCcceeeec--CC---CHHHHHHHHHHHHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGG--GGLIAAAKE--AR---YDKEAVMKFFRMLIR 153 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tSAk~--g~---nv~e~f~~l~~~li~ 153 (255)
+.+.++. +++..+|.-+.|... .|....... +. .+...+.++.+++++
T Consensus 191 ~~~~~~~-~vl~~Ip~~~~v~~A~~~G~~v~e~~~~~~~a~e~a~~y~~La~~il~ 245 (267)
T cd02032 191 FVEAVGM-PVLAVLPLIEDIRRSRVKGKTLFEMDESDEELAYRCDYYLLIADQLLA 245 (267)
T ss_pred HHHhCCC-CEEEEecCCccccHHHHcCCCHHHhCcccccccHHHHHHHHHHHHHHh
Confidence 6666765 444446655555443 222221111 11 123457777777665
No 347
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=59.45 E-value=5.3 Score=38.44 Aligned_cols=60 Identities=10% Similarity=0.183 Sum_probs=37.4
Q ss_pred cEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 75 PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 75 PiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
-++++-||+||..++.-.-.. ++...|.+. ...|.-|+.+ +||.-..|++-..+.+++.+
T Consensus 181 hiiilQNKiDli~e~~A~eq~----e~I~kFi~~----t~ae~aPiiP---------isAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQALEQH----EQIQKFIQG----TVAEGAPIIP---------ISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred eEEEEechhhhhhHHHHHHHH----HHHHHHHhc----cccCCCceee---------ehhhhccChHHHHHHHHhcC
Confidence 489999999998762100001 223333332 3345667777 99999999877666666544
No 348
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=54.01 E-value=24 Score=29.23 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=36.4
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
..-..-||.||..-++-..+-+.|..|+.-+.+. +|...++||++
T Consensus 79 ~vheq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~----------NP~L~~ipV~F 123 (126)
T PF14784_consen 79 SVHEQEDGTIFAMCMTGTSDKDSLLSWIRGLQET----------NPNLAQIPVLF 123 (126)
T ss_pred ceeEeccceEEEEEeccCCCHHHHHHHHHHHHhh----------CCchhcceEEE
Confidence 3455678899988889999999999999999884 56667788876
No 349
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=53.41 E-value=59 Score=32.54 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=50.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
..+|++|-|.|.-|+-.-.. ..+++..+.. ....-+|+|.|||||.+. -....|+
T Consensus 212 DSSDVvvqVlDARDPmGTrc--~~ve~ylkke------------~phKHli~vLNKvDLVPt-----------wvt~~Wv 266 (572)
T KOG2423|consen 212 DSSDVVVQVLDARDPMGTRC--KHVEEYLKKE------------KPHKHLIYVLNKVDLVPT-----------WVTAKWV 266 (572)
T ss_pred cccceeEEeeeccCCccccc--HHHHHHHhhc------------CCcceeEEEeeccccccH-----------HHHHHHH
Confidence 46788999999988753221 2333333321 223568999999999865 3355666
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
+.+.- |.|-+- |-.| .++..=+-++..|++++.+.
T Consensus 267 ~~lSk-----eyPTiA-------fHAs-i~nsfGKgalI~llRQf~kL 301 (572)
T KOG2423|consen 267 RHLSK-----EYPTIA-------FHAS-INNSFGKGALIQLLRQFAKL 301 (572)
T ss_pred HHHhh-----hCccee-------eehh-hcCccchhHHHHHHHHHHhh
Confidence 55432 111110 0022 34434456777777777654
No 350
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=50.76 E-value=36 Score=33.84 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=13.8
Q ss_pred CCCcEEEEEeCCCCCCC
Q 025248 72 LPVPYVVIGNKADVAAK 88 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~ 88 (255)
..+|++||.+|+|+...
T Consensus 272 L~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPA 288 (641)
T ss_pred hcCcEEEEEEeeccCcH
Confidence 34899999999998765
No 351
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=50.50 E-value=1.4e+02 Score=28.37 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=55.9
Q ss_pred CcEEEEEEECCChhhHH---HHHHHHHHHHHhCCCCCCCCCCCCCCCCC-cEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 29 DSGVIFVHDLSQRRTKT---SLQKWAVEIATSGTFSAPLASGGPGGLPV-PYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 29 adgvIlVyDvT~~~Sfe---~l~~Wl~ei~~~~~~s~~~~s~~~~~~~i-PiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
++.+|+| --.+..++. ++.+.+..+.+. +.++ .+-||.||.|.. ..+.+
T Consensus 173 ad~VIVV-t~pe~~si~~A~~v~kai~~~~~l-------------g~~~~i~GlViNr~d~~-------------~~ie~ 225 (329)
T cd02033 173 AQKVIVV-GSNDLQSLYVANNVCNAVEYFRKL-------------GGNVGVAGMVINKDDGT-------------GEAQA 225 (329)
T ss_pred CceEEEe-CCchHHHHHHHHHHHHHHHHHHHh-------------CCCCCceEEEEeCcCCc-------------chHHH
Confidence 4444444 333445553 456677666653 1112 267889999852 34778
Q ss_pred HHHHcCCCCeeecCCCCCCCCCC--CCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGG--GGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+++.+++ +++..||+-+.+-.. .|-.. ......+.++|..+++.|.+
T Consensus 226 ~ae~lgi-~vLg~IP~D~~V~~a~~~g~~~-~~p~s~~a~~f~~LA~~I~~ 274 (329)
T cd02033 226 FAAHAGI-PILAAIPADEELRRKSAAYQIV-GRPGTTWGPLFEQLATNVAE 274 (329)
T ss_pred HHHHhCC-CEEEECCCCHHHHHHHHcCCee-cCCCCHHHHHHHHHHHHHHH
Confidence 8899987 788778877643322 12111 22233456778888887766
No 352
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=48.83 E-value=35 Score=31.09 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=50.2
Q ss_pred EECCChhhHHHHHHHHHH--HHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCC
Q 025248 36 HDLSQRRTKTSLQKWAVE--IATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLP 113 (255)
Q Consensus 36 yDvT~~~Sfe~l~~Wl~e--i~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~ 113 (255)
+++.++..|.++--|+++ |+.+ |++-... -|.+...+-.+...++++.+++ +
T Consensus 17 ~n~~d~~~fr~lVvWLEDqKIR~Y------------------------~iedR~~-LR~i~s~~W~~~~~kYl~dl~c-P 70 (249)
T PF10036_consen 17 FNIDDEEEFRSLVVWLEDQKIRHY------------------------KIEDREK-LRNIDSSDWPKAFEKYLKDLGC-P 70 (249)
T ss_pred CCCCCHHHHHHHHHHHhhhhhccC------------------------CHhhHHH-HhcCCcchHHHHHHHHHHhcCC-C
Confidence 467899999999999998 5443 1111100 1344433334667778888776 4
Q ss_pred eeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccCCC
Q 025248 114 SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSDE 160 (255)
Q Consensus 114 ~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s~~ 160 (255)
+-. . .-.+.++||....++..|..+.
T Consensus 71 ~~~---------------~------~~~~~ldWLL~~AV~leY~Dn~ 96 (249)
T PF10036_consen 71 FSS---------------E------SRQEQLDWLLGLAVRLEYKDNA 96 (249)
T ss_pred Ccc---------------h------hHHHHHHHHHHHHHHHHHhccc
Confidence 322 2 2248899999999998886655
No 353
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=48.75 E-value=61 Score=29.98 Aligned_cols=61 Identities=28% Similarity=0.279 Sum_probs=37.7
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
--.+++|.+|.|.|-+- +|+....+ +.++.+.. + =-++.+|.||+|-. . +..+
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taer-i~~L~~el-----------g--~k~i~~V~NKv~e~-e-----------~~~~ 203 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEEL-----------G--IKRIFVVLNKVDEE-E-----------ELLR 203 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHh-----------C--CceEEEEEeeccch-h-----------HHHH
Confidence 34678999999999864 34443333 33444421 1 14699999999944 2 4455
Q ss_pred HHHHHcCC
Q 025248 104 QWVEKQGL 111 (255)
Q Consensus 104 ~~a~~~gl 111 (255)
..+...++
T Consensus 204 ~~~~~~~~ 211 (255)
T COG3640 204 ELAEELGL 211 (255)
T ss_pred hhhhccCC
Confidence 66666664
No 354
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.35 E-value=1.4e+02 Score=28.05 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
..|+++-+.|+|.|..+. =.+.+.....-+.+. ..-..++-+=|...|+|-..++-+.-+..++..++.
T Consensus 97 ~iF~~~gALifvIDaQdd-y~eala~L~~~v~ra----------ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~ 165 (347)
T KOG3887|consen 97 MIFRGVGALIFVIDAQDD-YMEALARLHMTVERA----------YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTN 165 (347)
T ss_pred HHHhccCeEEEEEechHH-HHHHHHHHHHHhhhe----------eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhh
Confidence 458999999999996432 223333322222221 112345778888899996544322223333334444
Q ss_pred HHHHHcCCC----CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 104 QWVEKQGLL----PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 104 ~~a~~~gl~----~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
+-....|+. .|.- ||- ....+-|||.++++.|+..
T Consensus 166 d~l~d~gle~v~vsf~L---------------TSI-yDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 166 DELADAGLEKVQVSFYL---------------TSI-YDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred HHHHhhhhccceEEEEE---------------eee-cchHHHHHHHHHHHHHhhh
Confidence 333444542 2222 554 3557889999998888753
No 355
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=45.47 E-value=35 Score=27.01 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=28.1
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA 83 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~ 83 (255)
...|||+-|| ....+.....+.+++.. +..+|++|++++.
T Consensus 38 ~i~avvi~~d---~~~~~~~~~ll~~i~~~-------------~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 38 DIAAVVISWD---GEEEDEAQELLDKIRER-------------NFGIPVFLLAERD 77 (115)
T ss_dssp TEEEEEEECH---HHHHHHHHHHHHHHHHH-------------STT-EEEEEESCC
T ss_pred CeeEEEEEcc---cccchhHHHHHHHHHHh-------------CCCCCEEEEecCC
Confidence 3455666666 66666777888888886 4559999999865
No 356
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=45.01 E-value=1.3e+02 Score=26.09 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=55.8
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
......+|.+|+|... +..++..+...++.+.... . .++.+|.|+++-.....+.. ...
T Consensus 128 ~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~------------~--~~~~iviN~~~~~~~~~~~~------~~~ 186 (261)
T TIGR01968 128 RNAVAPADEAIVVTTP-EVSAVRDADRVIGLLEAKG------------I--EKIHLIVNRLRPEMVKKGDM------LSV 186 (261)
T ss_pred HHHHHhCCeEEEEcCC-CcHHHHHHHHHHHHHHHcC------------C--CceEEEEeCcCchhcccccc------cCH
Confidence 3446678989988876 4667777777776665521 1 25678889998532210111 113
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCC--CCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGG--GGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
.++.+..+. ++...||.-..+... .|............+.+..+++.|+.
T Consensus 187 ~~~~~~~~~-~~~~~Ip~~~~~~~a~~~g~~v~~~~~s~~~~~~~~La~~l~~ 238 (261)
T TIGR01968 187 DDVLEILSI-PLIGVIPEDEAIIVSTNKGEPVVLNDKSRAGKAFENIARRILG 238 (261)
T ss_pred HHHHHHhCC-ceeEEccCCHHHHHHHhcCCCeecCCCChHHHHHHHHHHHHhc
Confidence 445555664 444434443333211 22222211112334566677766654
No 357
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=44.76 E-value=1.2e+02 Score=26.47 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=34.2
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee
Q 025248 40 QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE 116 (255)
Q Consensus 40 ~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E 116 (255)
+++--..+..|+.+++..+ +-++||-|+.- .....|++++|+ +|+-
T Consensus 44 ~~~~tpe~~~W~~e~k~~g---------------i~v~vvSNn~e---------------~RV~~~~~~l~v-~fi~ 89 (175)
T COG2179 44 NPDATPELRAWLAELKEAG---------------IKVVVVSNNKE---------------SRVARAAEKLGV-PFIY 89 (175)
T ss_pred CCCCCHHHHHHHHHHHhcC---------------CEEEEEeCCCH---------------HHHHhhhhhcCC-ceee
Confidence 3555678999999998852 66888888432 557789999997 7763
No 358
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=43.39 E-value=52 Score=31.54 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=32.2
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+.-....|+||=|.|.-=+-|=.+ .-+.++. ...|-|||-||+||.+.
T Consensus 41 ~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~----------------~~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 41 QNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL----------------PPKPRIIVLNKMDLADP 88 (335)
T ss_pred HhhcccccEEEEeeccccCCcccc--HHHHHhc----------------CCCceEEEEecccccCc
Confidence 345677899999999765554433 2222221 13788999999999984
No 359
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=43.25 E-value=2.6e+02 Score=25.57 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=52.4
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
+..||.+|++.+. +..++..+...++.+..... ...+. .-||.|+.+-. ....+
T Consensus 136 l~~AD~viIp~~p-~~~sl~~~~~l~~~i~~~~~-----------~~~l~~~gvv~n~~~~~-------------~~~~~ 190 (290)
T CHL00072 136 LNYADYCIIITDN-GFDALFAANRIAASVREKAR-----------THPLRLAGLVGNRTSKR-------------DLIDK 190 (290)
T ss_pred hhcCCEEEEEecC-CHHHHHHHHHHHHHHHHHhc-----------cCCCceEEEEEeCCCch-------------hHHHH
Confidence 3568989888765 45566555544443333110 11233 34788998721 22334
Q ss_pred HHHHcCCCCeeecCCCCCCCCCC--CCccee--eecCCC---HHHHHHHHHHHHHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGG--GGLIAA--AKEARY---DKEAVMKFFRMLIRR 154 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tS--Ak~g~n---v~e~f~~l~~~li~~ 154 (255)
+.+..+. +.+..||.-+.+..+ .|..+- +..... +..++..+.++|+++
T Consensus 191 ~~~~~~~-~vl~~Ip~~~~v~~A~~~g~pv~~~~p~s~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 191 YVEACPM-PVLEVLPLIEDIRVSRVKGKTLFEMVESEPSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred HHHHcCC-ceEEECCCChHHHHHHhCCCceEEeCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5555654 344445543333333 222221 222222 467788888888765
No 360
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.96 E-value=95 Score=34.70 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=35.4
Q ss_pred ccCCcEEEEEEECCChhhH---------HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 26 VVGDSGVIFVHDLSQRRTK---------TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sf---------e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
.+-.||||++.|+.+--+- ..|..-+.|+..+. ...+|++|+.||.|+...
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL------------~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL------------HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh------------ccCCceEEEEeccccccc
Confidence 4568999999998764221 22334466666643 345899999999999853
No 361
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.93 E-value=26 Score=34.66 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=35.1
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
|...=|...+|.+||+||...-+--++...-+..++. ..-.+-||.||+|..+.
T Consensus 173 ~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---------------~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 173 GVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---------------HEDKIRVVLNKADQVDT 226 (532)
T ss_pred HHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---------------CcceeEEEeccccccCH
Confidence 3344567789999999997765544444444444443 22447788899997653
No 362
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=40.75 E-value=1.1e+02 Score=30.50 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=14.8
Q ss_pred CCCcEEEEEeCCCCCCC
Q 025248 72 LPVPYVVIGNKADVAAK 88 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~ 88 (255)
.++|++|+.+|.||.+.
T Consensus 302 L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 302 LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hCCCeEEEEEeeccccc
Confidence 45999999999999876
No 363
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=40.55 E-value=27 Score=33.91 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=50.2
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
...||.+|-|.|++.+.--+....-+.-+..-+-.+. ....-+|=|-||+|..... ++.
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~--------pkl~~mieVdnkiD~e~~~---~e~---------- 313 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSE--------PKLQNMIEVDNKIDYEEDE---VEE---------- 313 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcH--------HHHhHHHhhcccccccccc---Ccc----------
Confidence 4568889999999999876665555444444211111 1112356677888876541 111
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++.+ ..- +||++|.++++....+=..+
T Consensus 314 -E~n~---~v~---------------isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 314 -EKNL---DVG---------------ISALTGDGLEELLKAEETKV 340 (410)
T ss_pred -ccCC---ccc---------------cccccCccHHHHHHHHHHHh
Confidence 1222 133 89999988877665554444
No 364
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=40.53 E-value=2e+02 Score=23.47 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=46.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCC---Ccc-CCccHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEG---TRG-SSGNLVDA 101 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~---r~V-s~~~l~e~ 101 (255)
..+|.+|+|-..+ ..++..+..+++.+.+. + ++ +-+|.|+.+...... ... .. ..
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~-------------~--~~~~gvv~N~~~~~~~~~~~~~~~~~~----~~ 149 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV-------------N--IPILGVVENMSYFVCPHCGKKIYIFGK----GG 149 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHHHHHHHHHHhc-------------C--CCeEEEEEcCCcccCCCCCCcccccCC----cc
Confidence 4789999998654 67888888888888763 1 23 457889988542210 111 11 45
Q ss_pred HHHHHHHcCCCCeeecCCC
Q 025248 102 ARQWVEKQGLLPSSEELPL 120 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~ 120 (255)
.+++++..+. +++-.+|+
T Consensus 150 ~~~~~~~~~~-~~~~~ip~ 167 (169)
T cd02037 150 GEKLAEELGV-PLLGKIPL 167 (169)
T ss_pred HHHHHHHcCC-CEEEeccC
Confidence 7788888876 55544554
No 365
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=40.27 E-value=89 Score=26.03 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=38.7
Q ss_pred EEEEEeCCCCCCCCCCccCCccHH-----HHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHH
Q 025248 76 YVVIGNKADVAAKEGTRGSSGNLV-----DAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMK 146 (255)
Q Consensus 76 iiLVGNK~DL~~~~~r~Vs~~~l~-----e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~ 146 (255)
++|+|.|.+--.- ..+|.. +-..++.+++|+ ..++. +||-+++.+.+.++.
T Consensus 57 V~v~GC~~geCHy-----~~GN~ka~rR~~~lke~l~elgie~eRv~~~w---------------iSa~E~ekf~e~~~e 116 (132)
T COG1908 57 VLVAGCKIGECHY-----ISGNYKAKRRMELLKELLKELGIEPERVRVLW---------------ISAAEGEKFAETINE 116 (132)
T ss_pred EEEecccccceee-----eccchHHHHHHHHHHHHHHHhCCCcceEEEEE---------------EehhhHHHHHHHHHH
Confidence 8999999874321 112221 335566677776 24555 999999777777777
Q ss_pred HHHHHHHH
Q 025248 147 FFRMLIRR 154 (255)
Q Consensus 147 l~~~li~~ 154 (255)
+..+|.+-
T Consensus 117 fv~~i~~l 124 (132)
T COG1908 117 FVERIKEL 124 (132)
T ss_pred HHHHHHHh
Confidence 77777653
No 366
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=39.93 E-value=60 Score=30.83 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=19.4
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHh
Q 025248 132 AAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 132 tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|.+-+||..+|.+.-+.|.+..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~h 372 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRMH 372 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHHH
Confidence 889999999999998877666543
No 367
>PTZ00258 GTP-binding protein; Provisional
Probab=38.23 E-value=32 Score=33.54 Aligned_cols=76 Identities=16% Similarity=0.298 Sum_probs=43.9
Q ss_pred CCcEEEEEeCC--CCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCC------------
Q 025248 73 PVPYVVIGNKA--DVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR------------ 138 (255)
Q Consensus 73 ~iPiiLVGNK~--DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~------------ 138 (255)
.-|+|+|+||. |+.... .+..++..+++.+.+-..++. +||+...
T Consensus 220 ~KP~iyv~N~~E~D~~~~~------~~~~~~l~~~~~~~~~~~~v~---------------~sa~~E~el~~l~~~~e~~ 278 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQK------NKWLAKIKEWVGEKGGGPIIP---------------YSAEFEEELAELGSEEERK 278 (390)
T ss_pred cCCEEEEEECchhhhcccc------hHHHHHHHHHHHhcCCCeEEE---------------eeHHHHHHHHhcCCHHHHH
Confidence 46999999999 872221 112255666777663125666 7776443
Q ss_pred -----------CHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 025248 139 -----------YDKEAVMKFFRMLIRRRYFSDEMPAPNPWSI 169 (255)
Q Consensus 139 -----------nv~e~f~~l~~~li~~~~~s~~~~~p~~~s~ 169 (255)
++++++..+++.|--..+|...+....+|.+
T Consensus 279 ~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i 320 (390)
T PTZ00258 279 EYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTI 320 (390)
T ss_pred HHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEe
Confidence 4555555555333334577666555555655
No 368
>PRK10818 cell division inhibitor MinD; Provisional
Probab=38.00 E-value=1.5e+02 Score=26.16 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=59.7
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
-...+|.+|+|.+.+ ..++..+...++.+....... .....++...+|.|+.|-.... .... ....+
T Consensus 132 ~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~------~~~~~~~~~~vv~n~~~~~~~~--~~~~----~~~~~ 198 (270)
T PRK10818 132 ALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRA------ENGEEPIKEHLLLTRYNPGRVS--RGDM----LSMED 198 (270)
T ss_pred HHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccc------cccccccceEEEEeccCHhhhh--hccc----ccHHH
Confidence 356789999997764 667777776666655311000 0001224457788998854210 0000 12456
Q ss_pred HHHHcCCCCeeecCCCCCCCCCC--CCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 105 WVEKQGLLPSSEELPLTESFPGG--GGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 105 ~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+.+..+. .+...||.-+.+... .|..+..+.+.....++..++++|+.
T Consensus 199 ~~~~~g~-~~~~~Ip~~~~v~~a~~~G~~v~~~~~~~~~~~~~~la~~l~~ 248 (270)
T PRK10818 199 VLEILRI-KLVGVIPEDQSVLRASNQGEPVILDIEADAGKAYADTVDRLLG 248 (270)
T ss_pred HHHHhCC-cEEEEecCCHHHHHHHHcCCeeEeCCCCHHHHHHHHHHHHHhC
Confidence 6666675 344445554433322 44443333343455667777776654
No 369
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.35 E-value=83 Score=29.84 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=15.1
Q ss_pred CCCCCCcEEEEEeCCCCCC
Q 025248 69 PGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 69 ~~~~~iPiiLVGNK~DL~~ 87 (255)
.+..++|+++||.|.|.-.
T Consensus 186 ~dP~P~PV~IVgsKYDvFq 204 (363)
T KOG3929|consen 186 IDPFPVPVVIVGSKYDVFQ 204 (363)
T ss_pred cCCCCCceEEeccchhhhc
Confidence 3455799999999999753
No 370
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=35.43 E-value=80 Score=25.36 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.3
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCC
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 85 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL 85 (255)
...+..+|.+|+|.+.+ ..++..+..-++++.+. ....++.+|.|+++-
T Consensus 61 ~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~-------------~~~~~~~lVvN~~~~ 109 (139)
T cd02038 61 LDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQ-------------LRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHh-------------cCCCCEEEEEeCCCC
Confidence 45688899999998875 55666555555555542 122467899999974
No 371
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=35.34 E-value=2.2e+02 Score=25.28 Aligned_cols=104 Identities=11% Similarity=0.057 Sum_probs=51.2
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE-EEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii-LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
-||.+|++... +..++..+...++.+.+.. . ..++.++ +|.|+..-. ... +..+++.
T Consensus 143 aad~viIp~~p-~~~sl~g~~~l~~~i~~~~---------~--~~~l~~~Giv~n~~~~~------~~~----~~~e~l~ 200 (275)
T PRK13233 143 KAQEVYIVASG-EMMAIYAANNICKGLVKYA---------E--QSGVRLGGIICNSRNVD------GEL----ELLEEFT 200 (275)
T ss_pred cCceEEEeccc-cHHHHHHHHHHHHHHHHHH---------h--cCCCceeEEEeeCCCCC------cHH----HHHHHHH
Confidence 57888888765 5667766665554443211 0 1225443 777864211 111 3344556
Q ss_pred HHcCCCCeeecCCCCCCCCCC--CCcceeee-cCCCHHHHHHHHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESFPGG--GGLIAAAK-EARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~--~~~~tSAk-~g~nv~e~f~~l~~~li~~ 154 (255)
+..+. .++..||.-+.+... .|..+... .+....+.|..++++++++
T Consensus 201 ~~~~~-~~l~~Ip~~~~v~~A~~~g~pv~~~~~~s~~a~~y~~La~ell~~ 250 (275)
T PRK13233 201 DAIGT-QMIHFVPRDNIVQKAEFNKKTVVEFDPDCNQAKEYKELARKIIEN 250 (275)
T ss_pred HHcCC-ceeeecCcchHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHhC
Confidence 66654 333334444333222 22222211 1223446788888888764
No 372
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=34.90 E-value=1.1e+02 Score=29.83 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=44.8
Q ss_pred CCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 16 GPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 16 ~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
+....-++.+..++|.+++|.+.+ --++.+.++.++++.+.. ....+.++|.||.+-.
T Consensus 227 ~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r------------~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 227 NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLR------------PNDPKPILVLNRVGVP 284 (366)
T ss_pred CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhC------------CCCCCceEEeeecCCC
Confidence 555566778999999999999874 567778888888888742 3346788899999854
No 373
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=34.12 E-value=2.2e+02 Score=22.93 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=33.9
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
...+..+|.+|+|.+.+ ..++..+..+++.+... . ...+.+|.|++|-..
T Consensus 79 ~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-------------~-~~~~~iv~N~~~~~~ 128 (179)
T cd02036 79 ITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL-------------G-IKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-------------C-CceEEEEEeCCcccc
Confidence 34567899999998765 45666676776666552 1 134678999998653
No 374
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=34.08 E-value=30 Score=33.64 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=38.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWA-VEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl-~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|-++-.+ .+..+.-.+=+..-|.+|++.+ ..|....-|+ .++.+. ..++++|-
T Consensus 90 lWDlPG~gt~~f--~~~~Yl~~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~~---------------gK~fyfVR 148 (376)
T PF05049_consen 90 LWDLPGIGTPNF--PPEEYLKEVKFYRYDFFIIISS----ERFTENDVQLAKEIQRM---------------GKKFYFVR 148 (376)
T ss_dssp EEEE--GGGSS----HHHHHHHTTGGG-SEEEEEES----SS--HHHHHHHHHHHHT---------------T-EEEEEE
T ss_pred EEeCCCCCCCCC--CHHHHHHHccccccCEEEEEeC----CCCchhhHHHHHHHHHc---------------CCcEEEEE
Confidence 788887654322 0000111122345688888875 3455544444 344442 27899999
Q ss_pred eCCCCC--C---CCCCccCCccHHHHHHHHHHH
Q 025248 81 NKADVA--A---KEGTRGSSGNLVDAARQWVEK 108 (255)
Q Consensus 81 NK~DL~--~---~~~r~Vs~~~l~e~a~~~a~~ 108 (255)
+|+|.. . ..++..+.+.+.++.++.|.+
T Consensus 149 TKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 149 TKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp --HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred ecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 999961 1 112344444455556655554
No 375
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=30.87 E-value=46 Score=34.01 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=16.7
Q ss_pred ceeeecCCCHHHHHHHHHHHH
Q 025248 131 IAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 131 ~tSAk~g~nv~e~f~~l~~~l 151 (255)
.++||+|.++++.+-.+.+..
T Consensus 190 ~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 190 LIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred hhhhhhcccHHHHHHHhhhee
Confidence 389999999988887776654
No 376
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=30.01 E-value=35 Score=27.50 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=14.7
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE 116 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E 116 (255)
++||+|+... . +-..++.+++.-...+-
T Consensus 1 AaNK~D~~~a------~----~ni~kl~~~~~~~~vVp 28 (109)
T PF08438_consen 1 AANKADLPAA------D----ENIEKLKEKYPDEPVVP 28 (109)
T ss_dssp EEE-GGG-S-------H----HHHHHHHHHHTT-EEEE
T ss_pred CCcccccccc------H----hHHHHHHHhCCCCceee
Confidence 5899998543 1 44556666665334555
No 377
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.64 E-value=1e+02 Score=23.86 Aligned_cols=29 Identities=7% Similarity=-0.070 Sum_probs=22.5
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHh
Q 025248 29 DSGVIFVHDLSQRRTKTSLQKWAVEIATS 57 (255)
Q Consensus 29 adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~ 57 (255)
.+.-+++...++...+..+..+++++++.
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEA 77 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHc
Confidence 33446666777888999999999999884
No 378
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=29.02 E-value=1.2e+02 Score=25.61 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=29.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCC
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 84 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~D 84 (255)
..+|++|+-| +++.+.+..++..+..+. .....|+|||-|--
T Consensus 68 ~~~D~vvly~----PKaK~e~~~lL~~l~~~L------------~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 68 QDFDTVVLYW----PKAKAEAQYLLANLLSHL------------PPGTEIFVVGENKG 109 (155)
T ss_dssp TT-SEEEEE------SSHHHHHHHHHHHHTTS-------------TT-EEEEEEEGGG
T ss_pred cCCCEEEEEc----cCcHHHHHHHHHHHHHhC------------CCCCEEEEEecCcc
Confidence 4688888887 788888999999988753 22378999998764
No 379
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=28.01 E-value=1.2e+02 Score=30.64 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC
Q 025248 42 RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL 111 (255)
Q Consensus 42 ~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl 111 (255)
.-|.+|.+.++.++++ + +|+||..||.--..+ .. .+...++|+++|.
T Consensus 353 ~G~aNL~~Hi~Nikkf-------------g--vp~VVAIN~F~tDt~--~E------i~~i~~~~~~~gv 399 (554)
T COG2759 353 KGFANLLKHIENIKKF-------------G--VPVVVAINKFPTDTE--AE------IAAIEKLCEEHGV 399 (554)
T ss_pred HHHHHHHHHHHHHHHc-------------C--CCeEEEeccCCCCCH--HH------HHHHHHHHHHcCC
Confidence 4566777777777764 2 999999999753322 11 1446788888885
No 380
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=27.80 E-value=56 Score=23.78 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=17.1
Q ss_pred EEEEEEECCChhhHHHHHHHHHHH
Q 025248 31 GVIFVHDLSQRRTKTSLQKWAVEI 54 (255)
Q Consensus 31 gvIlVyDvT~~~Sfe~l~~Wl~ei 54 (255)
-++++||+++......+.+.+...
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~~ 26 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKSY 26 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHh
Confidence 378999998887666665555443
No 381
>CHL00175 minD septum-site determining protein; Validated
Probab=26.51 E-value=2.5e+02 Score=24.99 Aligned_cols=109 Identities=15% Similarity=0.077 Sum_probs=55.3
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
..+..||.+|+|.+. +..++..+...++.+.+.. . ..+.+|.|+++-.....+.. ....
T Consensus 144 ~~l~~aD~viiV~~p-~~~si~~~~~~~~~l~~~~------------~--~~~~lvvN~~~~~~~~~~~~------~~~~ 202 (281)
T CHL00175 144 NAIAPAQEAIVVTTP-EITAIRDADRVAGLLEANG------------I--YNVKLLVNRVRPDMIQANDM------MSVR 202 (281)
T ss_pred HHHHhcCeeEEEcCC-ChHHHHHHHHHHHHHHHcC------------C--CceEEEEeccChhhhhhhcc------ccHH
Confidence 445678889888764 3556666666666555531 1 13567779987432110100 0123
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCC--CCccee-eecCCCHHHHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGG--GGLIAA-AKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tS-Ak~g~nv~e~f~~l~~~li~~ 154 (255)
++.+.++. +++..+|.-+.+... .|.... ...+.....+|..+.+.|..+
T Consensus 203 ~l~~~~~~-~~~~~Ip~d~~v~~a~~~g~~~~~~~~~~~~~~~~~~la~~l~~~ 255 (281)
T CHL00175 203 DVQEMLGI-PLLGAIPEDENVIISTNRGEPLVLNKKLTLSGIAFENAARRLVGK 255 (281)
T ss_pred HHHHHhCC-CeEEEccCCHhHHHHHHcCCceEeCCCCCHHHHHHHHHHHHHhcc
Confidence 45555554 444445554433322 121111 112223456778888777654
No 382
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=25.58 E-value=1.2e+02 Score=31.00 Aligned_cols=50 Identities=26% Similarity=0.224 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee
Q 025248 43 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE 116 (255)
Q Consensus 43 Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E 116 (255)
-|.+|.+.++.++++ + +|+||..||..-..+ ..+ +..+++|++.|. .+..
T Consensus 341 G~~NL~~Hi~n~~~f-------------g--~p~VVaiN~F~~Dt~--~Ei------~~v~~~~~~~g~-~~~~ 390 (524)
T cd00477 341 GFANLRKHIENIKKF-------------G--VPVVVAINKFSTDTD--AEL------ALVRKLAEEAGA-FVAV 390 (524)
T ss_pred HHHHHHHHHHHHHHc-------------C--CCeEEEecCCCCCCH--HHH------HHHHHHHHHcCC-CEEE
Confidence 456666666666654 2 899999999874433 111 457889999986 4443
No 383
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=25.50 E-value=2.1e+02 Score=27.24 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=28.2
Q ss_pred CCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+.|++|+|..++... +... ...++.+.... ....--.+|||-|++|....
T Consensus 118 g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~F----------G~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 118 TIDVLLYVDRLDAYR-VDTLDGQVIRAITDSF----------GKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred CCCEEEEEeccCccc-CCHHHHHHHHHHHHHh----------hhhhhccEEEEEECCccCCC
Confidence 689999997665332 3222 23344444321 00112358999999997644
No 384
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=25.28 E-value=2.9e+02 Score=23.71 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=30.9
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
...+..||.+|++...+ ..++..+..-+.++.+.. ....++.||.|++|..
T Consensus 131 ~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~------------~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 131 RQALAAADLVLVVVNAD-AACYATLHQQALALFAGS------------GPRIGPHFLINQFDPA 181 (246)
T ss_pred HHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc------------cccccceEEeeccCcc
Confidence 34567788899988764 556666653333333310 1224577889999854
No 385
>PRK11670 antiporter inner membrane protein; Provisional
Probab=25.08 E-value=6.1e+02 Score=24.23 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=59.8
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE-EEEeCCCCCCCC---CCcc-CCccHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADVAAKE---GTRG-SSGNLVDAA 102 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii-LVGNK~DL~~~~---~r~V-s~~~l~e~a 102 (255)
-+|++|+|.-.. .-++..+.+-+..+.+ .+++++ ||-|+++..... .+.+ .. ...
T Consensus 239 aad~viiV~tp~-~~s~~da~~~i~~~~~---------------~~~~ilGiV~Nm~~~~~~~~~~~~~if~~----~~~ 298 (369)
T PRK11670 239 PVTGAVVVTTPQ-DIALIDAKKGIVMFEK---------------VEVPVLGIVENMSMHICSNCGHHEPIFGT----GGA 298 (369)
T ss_pred cCCeEEEEecCc-hhHHHHHHHHHHHHhc---------------cCCCeEEEEEcCCccccCCccchhhhccc----chH
Confidence 478888887553 3344444454544433 236654 788998854321 0111 11 235
Q ss_pred HHHHHHcCCCCeeecCCCCCCCCCC--CCcceeeec-CCCHHHHHHHHHHHHHHHhc
Q 025248 103 RQWVEKQGLLPSSEELPLTESFPGG--GGLIAAAKE-ARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 103 ~~~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tSAk~-g~nv~e~f~~l~~~li~~~~ 156 (255)
.+++++++. +++..||+-..+.-+ .|....... ..-..++|..+.++++++..
T Consensus 299 ~~lae~~~~-~ll~~IP~~~~I~ea~~~G~Pv~~~~p~s~~a~~y~~LA~el~~~~~ 354 (369)
T PRK11670 299 EKLAEKYHT-QLLGQMPLHISLREDLDRGTPTVVSRPESEFTAIYRQLADRVAAQLY 354 (369)
T ss_pred HHHHHHcCC-cEEEEeCCChHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 678888886 666667766544333 233222222 22345778889988888753
No 386
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.02 E-value=3.8e+02 Score=21.88 Aligned_cols=62 Identities=6% Similarity=0.008 Sum_probs=35.7
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCC
Q 025248 33 IFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLL 112 (255)
Q Consensus 33 IlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~ 112 (255)
+++.+.....+...+..++.++++.. + ..++ ++||-..=..+. . . .+..+..+++|+.
T Consensus 57 ~V~lS~~~~~~~~~~~~~~~~L~~~~----------~--~~~~-i~vGG~~~~~~~--~---~----~~~~~~l~~~G~~ 114 (137)
T PRK02261 57 AILVSSLYGHGEIDCRGLREKCIEAG----------L--GDIL-LYVGGNLVVGKH--D---F----EEVEKKFKEMGFD 114 (137)
T ss_pred EEEEcCccccCHHHHHHHHHHHHhcC----------C--CCCe-EEEECCCCCCcc--C---h----HHHHHHHHHcCCC
Confidence 34445555678888889999988741 1 1354 445544422211 1 1 4555677788875
Q ss_pred Ceee
Q 025248 113 PSSE 116 (255)
Q Consensus 113 ~~~E 116 (255)
.+|.
T Consensus 115 ~vf~ 118 (137)
T PRK02261 115 RVFP 118 (137)
T ss_pred EEEC
Confidence 5554
No 387
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=23.73 E-value=1.2e+02 Score=27.55 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=47.3
Q ss_pred CCcccccccCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccC
Q 025248 19 TGQVRVLVVGDSGVIFVHDLSQR----RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGS 94 (255)
Q Consensus 19 ~gq~r~Yyr~adgvIlVyDvT~~----~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs 94 (255)
.|-+-.+.++.+|-.+|.-+-.. +....+..++..+.+.. ...++--|+|+..++
T Consensus 135 ~G~IDiL~~D~~G~~VVIElKR~~a~~~aV~QL~rY~~~l~~~~-----------~~~~VRGilvA~~i~---------- 193 (228)
T PF01939_consen 135 IGRIDILAKDKDGNLVVIELKRRRADRDAVEQLLRYVELLKRDP-----------GLEPVRGILVAPSIT---------- 193 (228)
T ss_dssp TEEEEEEEE-TTS-EEEEEE-SS-B-HHHHHHHHHHHHHHHHHH-------------S-EEEEEEES-B-----------
T ss_pred CCceeEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHhhcc-----------CCCceeEEEECCCCC----------
Confidence 35567789999998888877655 56677778888877631 123577789888765
Q ss_pred CccHHHHHHHHHHHcCCCCeee
Q 025248 95 SGNLVDAARQWVEKQGLLPSSE 116 (255)
Q Consensus 95 ~~~l~e~a~~~a~~~gl~~~~E 116 (255)
..++.++++.|+ .|.+
T Consensus 194 -----~~a~~ll~~~gl-ef~~ 209 (228)
T PF01939_consen 194 -----PQARELLEDRGL-EFVE 209 (228)
T ss_dssp -----HHHHHHHHHHT--EEEE
T ss_pred -----HHHHHHHHHcCC-EEEE
Confidence 678999999997 7776
No 388
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=23.48 E-value=1.4e+02 Score=30.82 Aligned_cols=46 Identities=17% Similarity=0.074 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC
Q 025248 43 TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL 111 (255)
Q Consensus 43 Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl 111 (255)
-|.+|.+.++.++++ .+|+||..|+..-..+ ..+ +..+++|++.|+
T Consensus 386 G~~NL~~Hi~n~~~f---------------g~pvVVaiN~F~~Dt~--~Ei------~~l~~~~~~~g~ 431 (587)
T PRK13507 386 GCANLLHHIGTVKKS---------------GINPVVCINAFYTDTH--AEI------AIVRRLAEQAGA 431 (587)
T ss_pred HHHHHHHHHHHHHHc---------------CCCeEEEeCCCCCCCH--HHH------HHHHHHHHHcCC
Confidence 445666666666654 2999999999865433 111 457788888886
No 389
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=23.43 E-value=3.8e+02 Score=25.19 Aligned_cols=23 Identities=4% Similarity=0.014 Sum_probs=18.7
Q ss_pred eeeecCCCHHHHHHHHHHHHHHH
Q 025248 132 AAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 132 tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|.+..||.-+|..+-..++..
T Consensus 329 TcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 329 TCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred eecccchhHHHHHHHHHHHHHHh
Confidence 77888889988888888777764
No 390
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=23.04 E-value=68 Score=29.78 Aligned_cols=41 Identities=15% Similarity=0.400 Sum_probs=30.2
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
.+..||+..|++..+ +..|+..+.++ .+||+++|++|.+|.
T Consensus 148 KAkLVIIA~DVsPie----~vk~LpaLCrk--------------~~VPY~iVktKaeLG 188 (263)
T PTZ00222 148 QARMVVIANNVDPVE----LVLWMPNLCRA--------------NKIPYAIVKDMARLG 188 (263)
T ss_pred CceEEEEeCCCCHHH----HHHHHHHHHHh--------------cCCCEEEECCHHHHH
Confidence 477799999987553 34566666662 349999999999875
No 391
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=21.88 E-value=2.1e+02 Score=27.07 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=33.4
Q ss_pred CcEEEEEEECCChhhHHH-HHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHH
Q 025248 29 DSGVIFVHDLSQRRTKTS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVE 107 (255)
Q Consensus 29 adgvIlVyDvT~~~Sfe~-l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~ 107 (255)
-|++|-|.|..+-..-.. +...+.+-.. ..=+||.||+||.+.. . .+..+++.+
T Consensus 117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----------------~AD~ivlNK~Dlv~~~--~------l~~l~~~l~ 171 (323)
T COG0523 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLA-----------------FADVIVLNKTDLVDAE--E------LEALEARLR 171 (323)
T ss_pred eceEEEEEeHHHhhhhHHHHHHHHHHHHH-----------------hCcEEEEecccCCCHH--H------HHHHHHHHH
Confidence 477899998776544322 3333322222 1137888999998762 1 144566666
Q ss_pred HcC
Q 025248 108 KQG 110 (255)
Q Consensus 108 ~~g 110 (255)
+++
T Consensus 172 ~ln 174 (323)
T COG0523 172 KLN 174 (323)
T ss_pred HhC
Confidence 665
No 392
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=21.85 E-value=1.3e+02 Score=23.67 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=19.6
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEI 54 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei 54 (255)
..++|.+|++=|+++......+..+++.+
T Consensus 17 ~~~~D~vi~~GD~~~~~~~~~~~~~~~~l 45 (135)
T cd07379 17 IPDGDVLIHAGDLTERGTLEELQKFLDWL 45 (135)
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHH
Confidence 35789999999999876555443333333
No 393
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=21.80 E-value=2.5e+02 Score=28.45 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=44.6
Q ss_pred ccCCCCCCCccccc--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCC
Q 025248 12 ELNGGPPTGQVRVL--VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE 89 (255)
Q Consensus 12 ~~~g~~~~gq~r~Y--yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~ 89 (255)
|.-||.-|+.- .| +--+|.+|+|.|...---=+.+ +.+ ++.+ ...+||+-..||.|....+
T Consensus 87 DTPGHeDFSED-TYRtLtAvDsAvMVIDaAKGiE~qT~-KLf-eVcr--------------lR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 87 DTPGHEDFSED-TYRTLTAVDSAVMVIDAAKGIEPQTL-KLF-EVCR--------------LRDIPIFTFINKLDREGRD 149 (528)
T ss_pred CCCCccccchh-HHHHHHhhheeeEEEecccCccHHHH-HHH-HHHh--------------hcCCceEEEeeccccccCC
Confidence 34455555432 12 3368999999998764322222 222 3333 3349999999999976552
Q ss_pred CCccCCccHHHHHHHHHHHcCC
Q 025248 90 GTRGSSGNLVDAARQWVEKQGL 111 (255)
Q Consensus 90 ~r~Vs~~~l~e~a~~~a~~~gl 111 (255)
. .+-..++.+++++
T Consensus 150 --P------~ELLdEiE~~L~i 163 (528)
T COG4108 150 --P------LELLDEIEEELGI 163 (528)
T ss_pred --h------HHHHHHHHHHhCc
Confidence 1 1456667777765
No 394
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=21.63 E-value=1.2e+02 Score=29.68 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeee
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSE 116 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~E 116 (255)
..|+|+|+||.|....+. ....+..++++++.+. ..+-
T Consensus 206 ~KP~lyvaN~~e~~~~~~-----n~~~~~i~~~~~~~~~-~vV~ 243 (372)
T COG0012 206 AKPMLYVANVSEDDLANL-----NEYVKRLKELAAKENA-EVVP 243 (372)
T ss_pred cCCeEEEEECCcccccch-----hHHHHHHHHHhhhcCC-cEEE
Confidence 469999999999775521 1234667778877764 4454
No 395
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=21.62 E-value=1.2e+02 Score=24.98 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=23.4
Q ss_pred CCcEEEEEEECCChhhH-HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCC
Q 025248 28 GDSGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADV 85 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sf-e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL 85 (255)
..+++|+|.|..+-... .+...+..++... =+||.||+||
T Consensus 118 ~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------------------d~ivlnk~dl 158 (158)
T cd03112 118 LLDGVITLVDAKHANQHLDQQTEAQSQIAFA------------------DRILLNKTDL 158 (158)
T ss_pred eeccEEEEEEhhHhHHHhhccHHHHHHHHHC------------------CEEEEecccC
Confidence 46789999996543321 1223344444431 2668899996
No 396
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=21.34 E-value=5.7e+02 Score=22.48 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=26.7
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE-EEEEeCCCC
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGNKADV 85 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi-iLVGNK~DL 85 (255)
+.-||.+|++... +..++..+...++.+.... . ...+++ .||.|++|-
T Consensus 136 l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~---------~--~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 136 LQYADYALVVAAN-DFDALFAANRIAASVQEKA---------K--NYDVRLAGIIGNRSDA 184 (268)
T ss_pred hhhcCEEEEEecC-chhHHHHHHHHHHHHHHHh---------h--cCCCceEEEEEeCCCh
Confidence 5678888888643 4555555554444443321 0 122443 467799873
No 397
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=21.00 E-value=75 Score=21.17 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=17.8
Q ss_pred CCccccc--cCCCCCCCCCCCCCCCCCCCCCCC
Q 025248 185 DDDKFYS--SGYSSDPYNMLPPLPAQRNLTPPP 215 (255)
Q Consensus 185 d~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 215 (255)
.++.|++ ..++--+|.-.-|+|+|+-.++|=
T Consensus 3 seekflrrl~r~~~grygpyqp~peq~lypqpy 35 (42)
T PF03875_consen 3 SEEKFLRRLGRFFYGRYGPYQPFPEQPLYPQPY 35 (42)
T ss_pred hHHHHHHHHHhhcccccCCcCCCCCCcCCCCCC
Confidence 3456666 333333367777788876655553
No 398
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=20.76 E-value=5.3e+02 Score=21.92 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=39.5
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
+-||.+|+|... +..++..+...++.+..... ..++. ..+|.||++.... . +...++
T Consensus 140 ~~ad~vliv~~p-~~~sl~~~~~l~~~i~~~~~-----------~~~~~~~gvv~N~~~~~~~------~----~~~~~~ 197 (212)
T cd02117 140 GKADEIYIVTSG-EFMALYAANNICKGIRKYAK-----------SGGVRLGGLICNSRNTDRE------T----ELIDAF 197 (212)
T ss_pred ccCcEEEEEecc-cHHHHHHHHHHHHHHHHhCc-----------ccCCcEEEEEEeCCCCccH------H----HHHHHH
Confidence 378999999866 45555444444444433210 11233 5689999985411 1 456778
Q ss_pred HHHcCCCCeeecCC
Q 025248 106 VEKQGLLPSSEELP 119 (255)
Q Consensus 106 a~~~gl~~~~Ee~p 119 (255)
.+.++. +.+..||
T Consensus 198 ~~~~~~-~vl~~IP 210 (212)
T cd02117 198 AERLGT-QVIHFVP 210 (212)
T ss_pred HHHcCC-CEEEecC
Confidence 888775 4444343
No 399
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=20.59 E-value=2.2e+02 Score=21.76 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=32.6
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeC
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNK 82 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK 82 (255)
...+..+|.+|+|.+. +..++..+..+++.+.+.. .+ ....+.+|.|+
T Consensus 59 ~~~l~~aD~vlvvv~~-~~~s~~~~~~~~~~l~~~~---------~~--~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQ-DLPSIRNAKRLLELLRVLD---------YS--LPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecC-ChHHHHHHHHHHHHHHHcC---------CC--CcCceEEEecC
Confidence 3467889999988864 5778888888888777632 11 12457777775
No 400
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=20.18 E-value=88 Score=29.15 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=30.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
.+..||+..|++.. .+..|+..+.++ ..||++++++|.+|..
T Consensus 148 KAkLVIIA~DVsP~----t~kk~LP~LC~k--------------~~VPY~iv~sK~eLG~ 189 (266)
T PTZ00365 148 KAKLVVIAHDVDPI----ELVCFLPALCRK--------------KEVPYCIIKGKSRLGK 189 (266)
T ss_pred CccEEEEeCCCCHH----HHHHHHHHHHhc--------------cCCCEEEECCHHHHHH
Confidence 47779999998654 345676665552 3499999999999853
No 401
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.13 E-value=74 Score=25.56 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=28.3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
.+..||+.=|++..+.-..+..|..+ .+||++.+++|.+|..
T Consensus 42 ka~LVilA~D~s~~~~~~~i~~lc~~------------------~~Ip~~~~~sk~eLG~ 83 (117)
T TIGR03677 42 IAKLVVIAEDVEPPEIVAHLPALCEE------------------KGIPYVYVKKKEDLGA 83 (117)
T ss_pred CccEEEEeCCCCcHHHHHHHHHHHHH------------------cCCCEEEeCCHHHHHH
Confidence 36678888888776555554444322 2399999999988753
Done!