Query 025248
Match_columns 255
No_of_seqs 288 out of 1177
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 5.1E-23 1.7E-27 179.0 8.5 112 2-154 66-177 (216)
2 3ihw_A Centg3; RAS, centaurin, 99.8 1.4E-19 4.6E-24 150.7 10.3 112 2-155 71-182 (184)
3 3q72_A GTP-binding protein RAD 99.8 3.7E-19 1.3E-23 142.5 11.8 113 2-154 53-165 (166)
4 2fu5_C RAS-related protein RAB 99.8 4E-19 1.4E-23 145.1 11.6 113 2-155 61-173 (183)
5 2iwr_A Centaurin gamma 1; ANK 99.8 2.9E-19 9.9E-24 145.3 10.4 114 2-155 58-171 (178)
6 2nzj_A GTP-binding protein REM 99.8 8.6E-19 2.9E-23 141.2 10.9 116 2-155 56-171 (175)
7 3q85_A GTP-binding protein REM 99.8 4.7E-19 1.6E-23 142.3 9.3 114 2-154 55-168 (169)
8 3reg_A RHO-like small GTPase; 99.8 1E-18 3.4E-23 144.9 11.1 115 2-155 75-190 (194)
9 2hup_A RAS-related protein RAB 99.8 6.8E-19 2.3E-23 148.1 9.6 114 2-155 82-195 (201)
10 3cbq_A GTP-binding protein REM 99.8 4.5E-19 1.5E-23 149.1 8.4 114 2-154 76-189 (195)
11 2g3y_A GTP-binding protein GEM 99.8 5.4E-19 1.8E-23 152.7 8.5 115 2-155 91-205 (211)
12 3kkq_A RAS-related protein M-R 99.8 1E-18 3.5E-23 142.7 9.7 112 2-153 70-182 (183)
13 3t5g_A GTP-binding protein RHE 99.8 1.1E-18 3.8E-23 142.2 9.7 114 2-155 58-171 (181)
14 3tw8_B RAS-related protein RAB 99.8 3.8E-18 1.3E-22 137.8 12.5 112 2-155 62-173 (181)
15 2a5j_A RAS-related protein RAB 99.8 2.3E-18 7.8E-23 142.7 11.2 113 2-155 74-186 (191)
16 3tkl_A RAS-related protein RAB 99.8 3E-18 1E-22 141.0 11.7 113 2-155 69-181 (196)
17 3dz8_A RAS-related protein RAB 99.8 8.6E-19 3E-23 145.2 8.3 113 2-155 76-188 (191)
18 2atx_A Small GTP binding prote 99.8 5.6E-18 1.9E-22 140.1 12.9 112 2-152 70-192 (194)
19 3q3j_B RHO-related GTP-binding 99.8 1.3E-18 4.3E-23 148.3 9.2 115 2-155 79-205 (214)
20 2ew1_A RAS-related protein RAB 99.8 2.5E-18 8.6E-23 145.8 10.6 113 2-155 79-191 (201)
21 1z08_A RAS-related protein RAB 99.8 2E-18 6.8E-23 138.4 8.8 111 2-153 59-169 (170)
22 2g6b_A RAS-related protein RAB 99.8 4.8E-18 1.6E-22 137.7 11.1 112 2-154 64-175 (180)
23 1z0f_A RAB14, member RAS oncog 99.8 2.1E-18 7.1E-23 139.1 8.6 111 2-153 68-178 (179)
24 2gf9_A RAS-related protein RAB 99.7 6.6E-18 2.3E-22 139.4 11.7 113 2-155 75-187 (189)
25 2bme_A RAB4A, RAS-related prot 99.7 3.8E-18 1.3E-22 139.3 10.2 113 2-155 63-175 (186)
26 2cjw_A GTP-binding protein GEM 99.7 4.5E-18 1.5E-22 142.6 10.8 115 2-155 60-174 (192)
27 2q3h_A RAS homolog gene family 99.7 6.6E-18 2.3E-22 140.4 11.7 115 2-155 72-197 (201)
28 2bcg_Y Protein YP2, GTP-bindin 99.7 1.5E-17 5E-22 139.1 13.7 113 2-155 61-173 (206)
29 1zbd_A Rabphilin-3A; G protein 99.7 5.1E-18 1.7E-22 141.3 10.8 114 2-156 61-174 (203)
30 3oes_A GTPase rhebl1; small GT 99.7 3E-18 1E-22 143.3 8.9 114 2-155 76-189 (201)
31 2o52_A RAS-related protein RAB 99.7 5.5E-18 1.9E-22 142.1 10.4 114 2-156 78-191 (200)
32 1m7b_A RND3/RHOE small GTP-bin 99.7 3.3E-18 1.1E-22 141.0 8.7 113 2-153 59-183 (184)
33 3t1o_A Gliding protein MGLA; G 99.7 2.5E-18 8.7E-23 140.7 7.9 111 2-155 78-194 (198)
34 3c5c_A RAS-like protein 12; GD 99.7 3.3E-18 1.1E-22 142.1 8.6 113 2-153 73-186 (187)
35 1r2q_A RAS-related protein RAB 99.7 4.4E-18 1.5E-22 135.8 8.9 109 2-151 59-167 (170)
36 1g16_A RAS-related protein SEC 99.7 9.7E-18 3.3E-22 134.1 11.0 111 2-154 56-166 (170)
37 2efe_B Small GTP-binding prote 99.7 6.2E-18 2.1E-22 137.2 9.9 111 2-153 65-175 (181)
38 3bwd_D RAC-like GTP-binding pr 99.7 3.7E-18 1.3E-22 138.6 8.4 110 2-152 60-180 (182)
39 2hxs_A RAB-26, RAS-related pro 99.7 1.6E-18 5.3E-23 140.4 6.1 114 2-154 60-174 (178)
40 2yc2_C IFT27, small RAB-relate 99.7 6E-18 2.1E-22 140.1 9.5 115 2-154 77-193 (208)
41 2fn4_A P23, RAS-related protei 99.7 5.8E-18 2E-22 136.7 9.1 114 2-155 61-174 (181)
42 3cpj_B GTP-binding protein YPT 99.7 6.5E-18 2.2E-22 144.0 9.8 113 2-155 66-178 (223)
43 1u8z_A RAS-related protein RAL 99.7 2.7E-18 9.2E-23 136.4 7.0 112 2-153 56-167 (168)
44 2atv_A RERG, RAS-like estrogen 99.7 3.1E-18 1.1E-22 142.4 7.7 113 2-155 80-193 (196)
45 2j0v_A RAC-like GTP-binding pr 99.7 4.1E-18 1.4E-22 143.0 8.2 112 2-154 61-181 (212)
46 2a9k_A RAS-related protein RAL 99.7 4.6E-18 1.6E-22 138.0 8.0 115 2-156 70-184 (187)
47 1z2a_A RAS-related protein RAB 99.7 6E-18 2E-22 135.1 8.4 110 2-153 58-167 (168)
48 3bc1_A RAS-related protein RAB 99.7 1E-17 3.5E-22 136.4 10.0 114 2-155 74-187 (195)
49 1ky3_A GTP-binding protein YPT 99.7 2.4E-17 8E-22 133.2 11.8 119 2-155 62-180 (182)
50 1z0j_A RAB-22, RAS-related pro 99.7 1.2E-17 4.2E-22 133.5 9.9 109 2-151 59-167 (170)
51 1gwn_A RHO-related GTP-binding 99.7 7.8E-18 2.7E-22 143.0 9.1 113 2-153 80-204 (205)
52 2oil_A CATX-8, RAS-related pro 99.7 1.3E-17 4.5E-22 137.7 10.1 113 2-155 78-190 (193)
53 2j1l_A RHO-related GTP-binding 99.7 9.4E-18 3.2E-22 142.4 9.4 115 2-155 86-211 (214)
54 2bov_A RAla, RAS-related prote 99.7 9.9E-18 3.4E-22 138.9 9.3 114 2-155 66-179 (206)
55 2il1_A RAB12; G-protein, GDP, 99.7 5.7E-18 1.9E-22 141.0 7.8 113 2-154 79-191 (192)
56 2fg5_A RAB-22B, RAS-related pr 99.7 6.3E-18 2.2E-22 140.4 7.9 111 2-153 76-186 (192)
57 1c1y_A RAS-related protein RAP 99.7 5.9E-18 2E-22 135.0 7.1 111 2-151 55-165 (167)
58 1ek0_A Protein (GTP-binding pr 99.7 7.9E-18 2.7E-22 134.3 7.4 111 2-151 56-167 (170)
59 1z06_A RAS-related protein RAB 99.7 1.1E-17 3.8E-22 138.0 8.1 113 2-153 73-188 (189)
60 1x3s_A RAS-related protein RAB 99.7 2.7E-17 9.3E-22 134.9 10.2 113 2-155 68-180 (195)
61 2p5s_A RAS and EF-hand domain 99.7 7.6E-18 2.6E-22 140.7 7.0 113 2-153 81-197 (199)
62 2f7s_A C25KG, RAS-related prot 99.7 1E-17 3.5E-22 141.1 7.4 114 2-155 88-201 (217)
63 1kao_A RAP2A; GTP-binding prot 99.7 1E-17 3.5E-22 132.9 7.0 112 2-153 55-166 (167)
64 1mh1_A RAC1; GTP-binding, GTPa 99.7 3.8E-17 1.3E-21 132.7 10.4 113 2-153 57-180 (186)
65 4dsu_A GTPase KRAS, isoform 2B 99.7 4.6E-17 1.6E-21 132.6 10.8 113 2-155 56-168 (189)
66 3cph_A RAS-related protein SEC 99.7 8.4E-17 2.9E-21 134.2 12.5 112 2-155 73-184 (213)
67 4gzl_A RAS-related C3 botulinu 99.7 1.3E-17 4.4E-22 140.5 7.6 111 2-151 82-203 (204)
68 2y8e_A RAB-protein 6, GH09086P 99.7 1.3E-17 4.4E-22 134.4 7.0 110 2-152 67-176 (179)
69 3clv_A RAB5 protein, putative; 99.7 5.4E-17 1.8E-21 132.5 10.8 110 2-155 97-206 (208)
70 1wms_A RAB-9, RAB9, RAS-relate 99.7 4.9E-17 1.7E-21 131.4 10.4 115 2-153 60-174 (177)
71 2gco_A H9, RHO-related GTP-bin 99.7 5E-17 1.7E-21 136.1 10.4 112 2-152 77-199 (201)
72 3l0i_B RAS-related protein RAB 99.7 2.6E-18 9E-23 143.5 2.4 110 2-152 86-195 (199)
73 2fv8_A H6, RHO-related GTP-bin 99.7 3.9E-17 1.3E-21 137.4 9.6 116 2-156 77-203 (207)
74 4djt_A GTP-binding nuclear pro 99.7 1.8E-17 6.3E-22 139.6 7.0 112 2-154 65-176 (218)
75 1vg8_A RAS-related protein RAB 99.7 1.4E-16 4.6E-21 132.4 11.5 117 2-155 61-177 (207)
76 3con_A GTPase NRAS; structural 99.7 1.7E-16 6E-21 130.4 11.2 113 2-155 73-185 (190)
77 3llu_A RAS-related GTP-binding 99.7 2.2E-17 7.7E-22 137.8 5.4 109 2-151 73-195 (196)
78 2erx_A GTP-binding protein DI- 99.7 3.2E-17 1.1E-21 130.9 5.3 111 2-151 55-165 (172)
79 3gj0_A GTP-binding nuclear pro 99.7 8.6E-17 2.9E-21 136.3 7.9 110 2-155 68-177 (221)
80 2ce2_X GTPase HRAS; signaling 99.7 1.4E-16 4.9E-21 125.8 8.7 111 2-153 55-165 (166)
81 4bas_A ADP-ribosylation factor 99.7 1.5E-16 5.2E-21 131.1 9.0 123 2-155 67-191 (199)
82 1r8s_A ADP-ribosylation factor 99.7 7.6E-17 2.6E-21 128.7 6.9 109 2-154 48-163 (164)
83 1f6b_A SAR1; gtpases, N-termin 99.7 1.5E-16 5.2E-21 133.6 7.7 108 2-150 73-196 (198)
84 2wkq_A NPH1-1, RAS-related C3 99.6 3.4E-16 1.1E-20 139.3 9.8 113 2-153 207-330 (332)
85 1fzq_A ADP-ribosylation factor 99.6 1.3E-16 4.6E-21 131.7 6.0 109 2-154 64-179 (181)
86 1upt_A ARL1, ADP-ribosylation 99.6 4.7E-16 1.6E-20 124.6 8.7 111 2-153 55-169 (171)
87 3th5_A RAS-related C3 botulinu 99.4 1.8E-17 6.3E-22 138.6 0.0 111 2-151 82-203 (204)
88 1m2o_B GTP-binding protein SAR 99.6 3.7E-16 1.3E-20 130.2 7.6 108 2-150 71-189 (190)
89 2x77_A ADP-ribosylation factor 99.6 1.2E-15 4E-20 125.6 10.3 109 2-154 70-185 (189)
90 1ksh_A ARF-like protein 2; sma 99.6 5.5E-16 1.9E-20 127.0 8.3 112 2-155 66-182 (186)
91 1moz_A ARL1, ADP-ribosylation 99.6 1.2E-15 4.1E-20 124.1 10.1 112 2-154 66-181 (183)
92 2b6h_A ADP-ribosylation factor 99.6 2.7E-16 9.3E-21 131.2 6.3 107 2-152 77-190 (192)
93 2gf0_A GTP-binding protein DI- 99.6 3.4E-16 1.2E-20 129.0 6.2 112 2-153 60-171 (199)
94 2h57_A ADP-ribosylation factor 99.6 1.5E-15 5E-20 125.3 9.7 111 2-152 71-186 (190)
95 1zd9_A ADP-ribosylation factor 99.6 4.1E-16 1.4E-20 129.0 5.8 108 2-153 71-185 (188)
96 1zj6_A ADP-ribosylation factor 99.6 8.8E-16 3E-20 126.4 7.8 110 2-153 64-178 (187)
97 2h17_A ADP-ribosylation factor 99.6 1E-15 3.5E-20 125.6 7.8 107 2-150 69-180 (181)
98 3r7w_B Gtpase2, GTP-binding pr 99.6 4.6E-17 1.6E-21 151.3 -0.9 114 2-153 50-174 (331)
99 2zej_A Dardarin, leucine-rich 99.6 2.8E-16 9.7E-21 129.8 2.6 113 2-152 60-177 (184)
100 3c5h_A Glucocorticoid receptor 99.6 2.1E-15 7.3E-20 132.7 6.1 89 28-151 162-253 (255)
101 1cip_A Protein (guanine nucleo 99.6 9.3E-16 3.2E-20 143.0 3.7 116 2-155 197-346 (353)
102 2xtz_A Guanine nucleotide-bind 99.6 1.3E-15 4.4E-20 142.3 4.6 122 2-156 187-348 (354)
103 2f9l_A RAB11B, member RAS onco 99.6 2E-14 7E-19 120.0 10.9 113 2-155 58-170 (199)
104 3o47_A ADP-ribosylation factor 99.5 5.9E-15 2E-19 135.2 6.9 108 2-153 213-327 (329)
105 1azs_C GS-alpha; complex (lyas 99.5 5.7E-15 1.9E-19 140.3 6.0 119 2-155 221-387 (402)
106 2qu8_A Putative nucleolar GTP- 99.5 2.4E-14 8.2E-19 122.4 7.7 101 23-155 103-207 (228)
107 3r7w_A Gtpase1, GTP-binding pr 99.5 7.5E-15 2.5E-19 133.0 4.6 116 2-152 56-180 (307)
108 3ohm_A Guanine nucleotide-bind 99.5 3.3E-15 1.1E-19 138.4 2.1 116 2-155 171-320 (327)
109 3lvq_E ARF-GAP with SH3 domain 99.5 3.8E-14 1.3E-18 135.2 9.5 108 2-153 370-484 (497)
110 2wji_A Ferrous iron transport 99.5 1.1E-14 3.6E-19 118.3 4.0 108 2-151 54-163 (165)
111 1oix_A RAS-related protein RAB 99.5 1E-13 3.6E-18 115.6 10.1 98 20-151 93-190 (191)
112 1zcb_A G alpha I/13; GTP-bindi 99.5 1E-14 3.5E-19 136.4 4.3 117 2-156 205-356 (362)
113 1u0l_A Probable GTPase ENGC; p 99.5 5.8E-14 2E-18 127.2 9.0 91 21-149 77-169 (301)
114 2fh5_B SR-beta, signal recogni 99.4 8.6E-14 2.9E-18 116.7 5.8 72 2-88 58-130 (214)
115 2cxx_A Probable GTP-binding pr 99.4 2.4E-14 8.1E-19 116.8 1.3 98 22-155 72-186 (190)
116 2dyk_A GTP-binding protein; GT 99.4 2E-14 6.9E-19 114.0 0.6 108 2-151 53-160 (161)
117 2lkc_A Translation initiation 99.4 1.1E-12 3.7E-17 105.8 9.2 107 2-155 59-173 (178)
118 4fid_A G protein alpha subunit 99.4 9.1E-14 3.1E-18 129.4 2.4 118 2-153 165-328 (340)
119 2gj8_A MNME, tRNA modification 99.4 3.8E-14 1.3E-18 116.4 -1.4 86 24-151 79-164 (172)
120 3pqc_A Probable GTP-binding pr 99.3 4.1E-13 1.4E-17 109.5 3.6 94 23-153 96-194 (195)
121 2wjg_A FEOB, ferrous iron tran 99.3 3.3E-13 1.1E-17 110.3 2.9 110 2-153 58-169 (188)
122 3dpu_A RAB family protein; roc 99.3 2.2E-12 7.4E-17 124.9 6.2 108 2-154 102-209 (535)
123 1svi_A GTP-binding protein YSX 99.2 8.3E-12 2.8E-16 102.4 6.7 92 22-151 96-193 (195)
124 3iev_A GTP-binding protein ERA 99.2 8.3E-12 2.8E-16 113.1 7.3 115 2-152 63-181 (308)
125 1nrj_B SR-beta, signal recogni 99.2 2.2E-12 7.6E-17 108.4 3.1 105 2-139 59-170 (218)
126 2yv5_A YJEQ protein; hydrolase 99.2 7.5E-12 2.6E-16 113.5 6.6 99 14-148 64-164 (302)
127 2hjg_A GTP-binding protein ENG 99.2 1.3E-11 4.5E-16 116.7 5.9 115 2-153 227-349 (436)
128 1lnz_A SPO0B-associated GTP-bi 99.2 1.6E-11 5.6E-16 113.8 6.2 114 2-153 210-330 (342)
129 3b1v_A Ferrous iron uptake tra 99.2 6.2E-12 2.1E-16 112.8 3.1 107 2-150 53-161 (272)
130 3a1s_A Iron(II) transport prot 99.2 1E-11 3.5E-16 110.0 3.6 108 2-151 56-165 (258)
131 4dcu_A GTP-binding protein ENG 99.1 4.4E-11 1.5E-15 113.7 6.8 116 2-154 247-370 (456)
132 3qq5_A Small GTP-binding prote 99.1 1.3E-11 4.4E-16 117.7 3.0 110 2-153 87-196 (423)
133 3gee_A MNME, tRNA modification 99.1 1.2E-10 4E-15 112.5 9.1 111 2-152 285-397 (476)
134 2e87_A Hypothetical protein PH 99.1 8.7E-11 3E-15 108.2 6.8 93 24-153 242-336 (357)
135 3iby_A Ferrous iron transport 99.1 9.5E-12 3.2E-16 110.3 -0.4 108 2-150 52-164 (256)
136 4dhe_A Probable GTP-binding pr 99.1 6.8E-11 2.3E-15 99.3 4.3 97 22-153 106-211 (223)
137 3l82_B F-box only protein 4; T 99.0 6.1E-11 2.1E-15 104.7 2.7 107 20-154 117-224 (227)
138 3i8s_A Ferrous iron transport 99.0 3.2E-11 1.1E-15 107.4 0.3 107 2-149 54-165 (274)
139 1mky_A Probable GTP-binding pr 99.0 1.2E-10 4E-15 110.3 3.6 112 2-154 53-167 (439)
140 3k53_A Ferrous iron transport 99.0 3.7E-10 1.3E-14 99.6 5.9 110 2-152 54-165 (271)
141 1wf3_A GTP-binding protein; GT 99.0 9.9E-11 3.4E-15 106.2 2.1 110 2-151 59-171 (301)
142 1xzp_A Probable tRNA modificat 98.9 1.3E-09 4.3E-14 105.5 8.1 108 2-153 295-405 (482)
143 3sjy_A Translation initiation 98.9 1.4E-09 4.7E-14 101.8 7.0 110 2-151 79-190 (403)
144 3cb4_D GTP-binding protein LEP 98.9 1.2E-09 4.1E-14 108.3 6.4 105 2-152 75-181 (599)
145 2hjg_A GTP-binding protein ENG 98.9 1.8E-10 6.2E-15 108.9 0.2 109 2-152 55-164 (436)
146 3geh_A MNME, tRNA modification 98.9 1.7E-09 5.9E-14 104.0 6.6 107 2-153 276-384 (462)
147 2ged_A SR-beta, signal recogni 98.9 2.5E-09 8.5E-14 87.6 6.4 72 2-88 95-171 (193)
148 2ywe_A GTP-binding protein LEP 98.9 2.2E-09 7.6E-14 106.5 6.6 105 2-152 77-183 (600)
149 1mky_A Probable GTP-binding pr 98.9 4.3E-09 1.5E-13 99.5 8.2 115 2-153 232-355 (439)
150 3l2o_B F-box only protein 4; s 98.8 9.5E-10 3.2E-14 101.2 2.7 102 22-154 204-309 (312)
151 1ega_A Protein (GTP-binding pr 98.8 9.4E-10 3.2E-14 99.4 2.6 112 2-151 60-173 (301)
152 3p26_A Elongation factor 1 alp 98.8 4.5E-09 1.5E-13 100.8 6.6 104 2-142 115-227 (483)
153 2qag_A Septin-2, protein NEDD5 98.8 4.4E-10 1.5E-14 104.3 -1.5 97 24-157 128-237 (361)
154 1s0u_A EIF-2-gamma, translatio 98.8 1E-08 3.4E-13 96.1 7.5 106 2-151 85-196 (408)
155 1jny_A EF-1-alpha, elongation 98.8 3.8E-09 1.3E-13 100.0 4.5 113 2-145 88-205 (435)
156 3izy_P Translation initiation 98.7 4E-09 1.4E-13 103.4 4.1 109 2-151 56-166 (537)
157 1wb1_A Translation elongation 98.7 5.2E-09 1.8E-13 100.8 4.2 106 2-152 77-188 (482)
158 1g7s_A Translation initiation 98.7 5.4E-08 1.8E-12 96.3 11.3 116 2-152 74-217 (594)
159 2c78_A Elongation factor TU-A; 98.7 6.7E-09 2.3E-13 97.1 4.2 98 2-140 79-181 (405)
160 3h2y_A GTPase family protein; 98.7 1.8E-08 6E-13 93.9 7.1 92 22-149 63-156 (368)
161 1d2e_A Elongation factor TU (E 98.7 1.3E-08 4.4E-13 95.2 5.6 111 2-153 70-191 (397)
162 1zun_B Sulfate adenylate trans 98.7 5.4E-09 1.8E-13 98.8 2.9 104 2-145 108-216 (434)
163 3j2k_7 ERF3, eukaryotic polype 98.7 1.7E-08 5.9E-13 95.9 5.7 112 2-145 99-217 (439)
164 2aka_B Dynamin-1; fusion prote 98.7 5E-09 1.7E-13 92.2 1.6 111 2-149 129-249 (299)
165 1r5b_A Eukaryotic peptide chai 98.6 6.4E-09 2.2E-13 99.6 1.8 109 2-144 125-243 (467)
166 3tr5_A RF-3, peptide chain rel 98.6 7.6E-08 2.6E-12 94.0 9.0 64 2-88 86-149 (528)
167 1f60_A Elongation factor EEF1A 98.6 1.4E-08 4.9E-13 96.9 3.6 103 2-143 89-202 (458)
168 2xtp_A GTPase IMAP family memb 98.6 5.9E-08 2E-12 84.3 6.6 104 24-155 101-210 (260)
169 4dcu_A GTP-binding protein ENG 98.6 9.7E-09 3.3E-13 97.5 1.8 89 21-151 95-183 (456)
170 2qtf_A Protein HFLX, GTP-bindi 98.6 2.2E-07 7.6E-12 86.5 10.4 104 24-159 253-360 (364)
171 1kk1_A EIF2gamma; initiation o 98.5 2.6E-08 8.8E-13 93.3 2.8 90 25-151 103-198 (410)
172 3t34_A Dynamin-related protein 98.5 1.5E-08 5E-13 93.2 0.8 123 2-160 140-268 (360)
173 1zo1_I IF2, translation initia 98.5 1.8E-08 6.3E-13 98.0 1.2 105 2-149 55-163 (501)
174 3izq_1 HBS1P, elongation facto 98.5 3.1E-08 1.1E-12 98.2 2.2 104 2-143 249-362 (611)
175 3lxx_A GTPase IMAP family memb 98.5 1E-07 3.4E-12 81.9 4.5 101 23-153 107-214 (239)
176 3ec1_A YQEH GTPase; atnos1, at 98.5 1.1E-07 3.9E-12 88.4 5.2 92 23-150 66-159 (369)
177 3avx_A Elongation factor TS, e 98.4 1.6E-07 5.6E-12 99.5 4.4 111 2-153 363-482 (1289)
178 2elf_A Protein translation elo 98.4 2E-07 6.7E-12 87.0 4.0 110 2-153 64-180 (370)
179 2j69_A Bacterial dynamin-like 98.3 7.1E-07 2.4E-11 89.6 6.3 68 2-88 178-245 (695)
180 3mca_A HBS1, elongation factor 98.3 7.5E-08 2.6E-12 95.1 -0.8 102 2-142 259-372 (592)
181 1udx_A The GTP-binding protein 98.3 1E-06 3.5E-11 83.8 6.9 94 27-155 234-327 (416)
182 3lxw_A GTPase IMAP family memb 98.2 7.6E-07 2.6E-11 77.8 5.0 121 2-153 74-208 (247)
183 2qnr_A Septin-2, protein NEDD5 98.2 9.9E-08 3.4E-12 86.3 -1.2 62 73-155 155-216 (301)
184 3t5d_A Septin-7; GTP-binding p 98.2 1.9E-07 6.4E-12 82.5 0.6 86 29-150 116-201 (274)
185 1dar_A EF-G, elongation factor 98.2 2.1E-06 7.3E-11 86.1 7.5 64 2-88 81-144 (691)
186 2wsm_A Hydrogenase expression/ 98.2 1.5E-06 5.1E-11 72.8 5.4 86 27-153 128-214 (221)
187 2dy1_A Elongation factor G; tr 98.2 2.2E-06 7.5E-11 85.6 7.1 62 2-86 78-139 (665)
188 2qag_C Septin-7; cell cycle, c 98.2 7.3E-07 2.5E-11 84.8 3.3 94 21-150 129-224 (418)
189 1pui_A ENGB, probable GTP-bind 98.1 1.8E-06 6E-11 71.5 4.5 88 27-151 107-197 (210)
190 2rdo_7 EF-G, elongation factor 98.1 5.9E-06 2E-10 83.1 8.3 53 20-88 97-149 (704)
191 1puj_A YLQF, conserved hypothe 98.0 5.1E-06 1.8E-10 74.6 6.1 89 20-152 15-105 (282)
192 2xex_A Elongation factor G; GT 97.9 1.4E-05 4.8E-10 80.2 7.8 64 2-88 79-142 (693)
193 1wxq_A GTP-binding protein; st 97.9 4.9E-06 1.7E-10 78.3 3.9 40 2-41 75-114 (397)
194 1h65_A Chloroplast outer envel 97.9 3.3E-06 1.1E-10 74.1 1.9 76 2-88 91-169 (270)
195 1jwy_B Dynamin A GTPase domain 97.9 2.6E-06 8.8E-11 75.6 1.0 95 22-153 161-262 (315)
196 2x2e_A Dynamin-1; nitration, h 97.9 9.5E-07 3.3E-11 81.0 -2.3 110 2-149 134-254 (353)
197 3def_A T7I23.11 protein; chlor 97.8 1.2E-05 4E-10 70.4 4.7 69 2-88 88-166 (262)
198 2hf9_A Probable hydrogenase ni 97.8 1.1E-05 3.7E-10 67.7 3.4 59 74-153 165-224 (226)
199 2h5e_A Peptide chain release f 97.8 6E-06 2.1E-10 80.5 2.0 67 21-111 98-164 (529)
200 3p32_A Probable GTPase RV1496/ 97.8 1.4E-05 4.8E-10 73.5 3.9 87 25-153 189-284 (355)
201 1n0u_A EF-2, elongation factor 97.7 1.4E-05 4.9E-10 81.8 3.7 51 21-87 114-164 (842)
202 1yrb_A ATP(GTP)binding protein 97.7 0.00013 4.6E-09 62.5 8.3 22 132-153 236-257 (262)
203 2qpt_A EH domain-containing pr 97.5 4E-05 1.4E-09 75.0 2.9 72 2-88 158-233 (550)
204 2p67_A LAO/AO transport system 97.5 9.4E-05 3.2E-09 67.6 4.9 86 25-152 166-260 (341)
205 3cnl_A YLQF, putative uncharac 97.5 3E-05 1E-09 68.9 1.5 82 20-148 13-96 (262)
206 2dby_A GTP-binding protein; GD 97.3 0.00018 6.2E-09 67.2 4.4 45 74-137 202-246 (368)
207 2www_A Methylmalonic aciduria 97.1 0.00046 1.6E-08 63.4 5.3 91 25-151 184-277 (349)
208 1jal_A YCHF protein; nucleotid 97.1 0.0002 6.7E-09 67.0 2.8 75 73-169 199-295 (363)
209 1t9h_A YLOQ, probable GTPase E 97.0 0.00079 2.7E-08 61.4 6.1 87 23-144 81-168 (307)
210 2rcn_A Probable GTPase ENGC; Y 96.8 0.0041 1.4E-07 58.0 9.3 86 21-145 123-211 (358)
211 3j25_A Tetracycline resistance 95.9 0.012 4.1E-07 58.3 6.7 62 11-88 72-134 (638)
212 3vqt_A RF-3, peptide chain rel 95.9 0.017 5.8E-07 56.4 7.6 61 12-88 106-167 (548)
213 3zvr_A Dynamin-1; hydrolase, D 95.8 0.0013 4.4E-08 67.1 -0.7 90 24-150 182-275 (772)
214 2qm8_A GTPase/ATPase; G protei 95.5 0.011 3.9E-07 53.9 4.7 92 25-151 165-259 (337)
215 4fn5_A EF-G 1, elongation fact 93.9 0.15 5.1E-06 51.0 8.3 61 12-88 91-152 (709)
216 3end_A Light-independent proto 86.6 3.5 0.00012 35.8 9.4 108 22-155 173-287 (307)
217 2ohf_A Protein OLA1, GTP-bindi 83.4 0.25 8.6E-06 46.5 0.3 45 2-46 90-134 (396)
218 3k9g_A PF-32 protein; ssgcid, 82.2 6.8 0.00023 33.1 9.0 105 24-154 162-266 (267)
219 2j37_W Signal recognition part 79.7 2.3 7.9E-05 41.1 5.6 91 28-149 213-309 (504)
220 1ni3_A YCHF GTPase, YCHF GTP-b 76.2 6.6 0.00022 36.6 7.5 69 73-161 224-315 (392)
221 4dzz_A Plasmid partitioning pr 74.1 4.3 0.00015 32.5 5.0 110 23-154 92-204 (206)
222 4a9a_A Ribosome-interacting GT 66.8 2.6 9E-05 39.1 2.4 38 132-169 279-316 (376)
223 4a9a_A Ribosome-interacting GT 58.6 4.9 0.00017 37.3 2.6 19 24-42 145-163 (376)
224 3cwq_A Para family chromosome 57.5 39 0.0013 27.6 7.8 66 22-111 84-150 (209)
225 3kjh_A CO dehydrogenase/acetyl 54.2 55 0.0019 26.4 8.2 104 22-154 147-252 (254)
226 3sop_A Neuronal-specific septi 43.5 47 0.0016 28.7 6.4 49 23-88 106-155 (270)
227 3ea0_A ATPase, para family; al 38.0 1.1E+02 0.0036 24.8 7.5 51 23-86 135-185 (245)
228 3fwy_A Light-independent proto 37.1 2.2E+02 0.0074 25.1 10.1 81 14-120 172-253 (314)
229 2zay_A Response regulator rece 35.2 1.3E+02 0.0043 21.8 7.3 41 29-84 53-93 (147)
230 3jte_A Response regulator rece 35.0 1.2E+02 0.0043 21.7 8.3 40 28-84 49-88 (143)
231 2qr3_A Two-component system re 30.2 1.1E+02 0.0037 21.8 5.7 12 73-84 80-91 (140)
232 1cp2_A CP2, nitrogenase iron p 28.6 2.4E+02 0.0083 23.1 9.3 99 27-154 139-247 (269)
233 3dm5_A SRP54, signal recogniti 28.2 97 0.0033 29.2 6.2 43 28-88 212-254 (443)
234 2yvt_A Hypothetical protein AQ 27.6 51 0.0018 27.0 3.8 18 27-44 31-48 (260)
235 1ccw_A Protein (glutamate muta 27.4 2.1E+02 0.0071 21.9 8.6 81 28-151 54-134 (137)
236 1j8m_F SRP54, signal recogniti 27.4 96 0.0033 27.1 5.8 61 26-116 210-271 (297)
237 1zpw_X Hypothetical protein TT 25.2 65 0.0022 23.5 3.5 19 32-50 6-24 (90)
238 1bif_A 6-phosphofructo-2-kinas 23.8 80 0.0027 29.2 4.7 34 23-57 115-148 (469)
239 3exc_X Uncharacterized protein 22.2 84 0.0029 23.1 3.7 24 31-57 5-28 (91)
240 3eb2_A Putative dihydrodipicol 21.9 3.1E+02 0.011 23.9 8.1 57 28-106 99-155 (300)
241 1k68_A Phytochrome response re 21.6 2.1E+02 0.0072 19.9 7.9 42 28-84 55-96 (140)
242 4hhu_A OR280; engineered prote 20.7 3.2E+02 0.011 21.7 6.9 101 32-154 4-107 (170)
243 2v3c_C SRP54, signal recogniti 20.4 2.7E+02 0.0094 25.7 7.7 55 28-111 210-266 (432)
244 3lua_A Response regulator rece 20.3 1.4E+02 0.0048 21.4 4.6 13 72-84 80-92 (140)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.88 E-value=5.1e-23 Score=179.04 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=97.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.||++++++|+|||+++++||+++..|+.++..+. ..++|+|||||
T Consensus 66 iwDtaGqe~~~-------~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~------------~~~~piilVgN 126 (216)
T 4dkx_A 66 LWDTAGLERFR-------SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER------------GSDVIIMLVGN 126 (216)
T ss_dssp EECCSCTTTCG-------GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH------------TTSSEEEEEEE
T ss_pred EEECCCchhhh-------hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc------------CCCCeEEEEee
Confidence 68888877554 245689999999999999999999999999999998753 34599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... |.|+. +++.++|+++++ .|+| ||||+|.||+++|+.|++.|.+.
T Consensus 127 K~Dl~~~--r~V~~----~e~~~~a~~~~~-~~~e---------------~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 127 KTDLADK--RQVSI----EEGERKAKELNV-MFIE---------------TSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------EBTTTTBSHHHHHHHHHHHC---
T ss_pred ccchHhc--CcccH----HHHhhHHHHhCC-eeEE---------------EeCCCCcCHHHHHHHHHHHHHhh
Confidence 9999987 89998 999999999997 8999 99999999999999999887654
No 2
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.80 E-value=1.4e-19 Score=150.69 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=94.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ||+++|++|+|||++++.||+++..|+.++.... ....+|++||||
T Consensus 71 i~Dt~G~~~~~------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 127 (184)
T 3ihw_A 71 IRDEGGPPELQ------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-----------NASEVPMVLVGT 127 (184)
T ss_dssp EEECSSSCCHH------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-----------CGGGSCEEEEEE
T ss_pred EEECCCChhhh------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 57777765443 8999999999999999999999999999998742 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||.....+.++. +++.+++++++...|+| |||++|.||+++|+++++.+.+++
T Consensus 128 K~Dl~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 128 QDAISAANPRVIDD----SRARKLSTDLKRCTYYE---------------TCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp CTTCBTTBCCCSCH----HHHHHHHHHTTTCEEEE---------------EBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CcccccccccccCH----HHHHHHHHHcCCCeEEE---------------ecCCCCCCHHHHHHHHHHHHHHHh
Confidence 99996443477887 88999999998558999 999999999999999999988764
No 3
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.80 E-value=3.7e-19 Score=142.51 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=85.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||..|++.+. ...+.|++++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 53 i~D~~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~ilv~n 114 (166)
T 3q72_A 53 VYDIWEQDGGR-------WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-----------QTDDVPIILVGN 114 (166)
T ss_dssp EEECC----------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC--------------CCCEEEEEE
T ss_pred EEECCCCccch-------hhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEe
Confidence 57777766433 245579999999999999999999999999999998732 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... +.++. +++.++++..++ ++++ |||++|.|++++|+++++.+.++
T Consensus 115 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 115 KSDLVRS--REVSV----DEGRACAVVFDC-KFIE---------------TSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CTTCCSS--CCSCH----HHHHHHHHHTTC-EEEE---------------CBGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccccccc--cccCH----HHHHHHHHHhCC-cEEE---------------eccCCCCCHHHHHHHHHHHHHhc
Confidence 9999877 67777 888999999996 8999 99999999999999999998765
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.79 E-value=4e-19 Score=145.08 Aligned_cols=113 Identities=19% Similarity=0.336 Sum_probs=87.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.||+++|++|+|||++++.+|+.+..|+.++..+. ..++|++||||
T Consensus 61 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 121 (183)
T 2fu5_C 61 IWDTAGQERFR-------TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA------------SADVEKMILGN 121 (183)
T ss_dssp EEEC----------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEcCCCChhhh-------hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 68887766433 245679999999999999999999999999999998852 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++.++++++++ ++++ |||++|.||+++|+++.+.+.++.
T Consensus 122 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~i~~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 122 KCDVNDK--RQVSK----ERGEKLALDYGI-KFME---------------TSAKANINVENAFFTLARDIKAKM 173 (183)
T ss_dssp C--CCSC--CCSCH----HHHHHHHHHHTC-EEEE---------------CCC---CCHHHHHHHHHHHHHHHH
T ss_pred CccCCcc--CcCCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876 67776 888999999997 8999 999999999999999999988754
No 5
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.79 E-value=2.9e-19 Score=145.32 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=91.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++. ..||+++|++|+|||++++.||+.+..|+..+..... ....++|++||||
T Consensus 58 i~Dt~G~~~------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~---------~~~~~~piilv~n 116 (178)
T 2iwr_A 58 IREEAGAPD------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRG---------EGRGGLALALVGT 116 (178)
T ss_dssp EEECSSSCC------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC---------SSSCCCEEEEEEE
T ss_pred EEECCCCch------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHh---------cCCCCCCEEEEEE
Confidence 577777653 4699999999999999999999999998777665321 1124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+.....+.++. +++.+++++.+..+++| |||++|.||+++|+++++.+.+..
T Consensus 117 K~Dl~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 117 QDRISASSPRVVGD----ARARALXADMKRCSYYE---------------TXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp CTTCBTTBCCCSCH----HHHHHHHHHHSSEEEEE---------------EBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred CccccccccCcCCH----HHHHHHHHhhcCCeEEE---------------EeccccCCHHHHHHHHHHHHHHHH
Confidence 99996433367777 88899998874348899 999999999999999999988754
No 6
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=141.20 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=91.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||..|++..+ .....+.|++++|++|+|||++++.||+.+..|+.++.... ....+|++||||
T Consensus 56 ~~D~~g~~~~~-----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-----------~~~~~piilv~N 119 (175)
T 2nzj_A 56 VVDTWEAEKLD-----KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-----------QADHVPIILVGN 119 (175)
T ss_dssp EECCC------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC---------------CCEEEEEE
T ss_pred EEecCCCCccc-----hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-----------ccCCCCEEEEEE
Confidence 68887766432 12334578999999999999999999999999999988731 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.++. +++..+++..++ ++++ |||++|.||+++|+++++.+.+++
T Consensus 120 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 120 KADLARC--REVSV----EEGRACAVVFDC-KFIE---------------TSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp CTTCTTT--CCSCH----HHHHHHHHHHTS-EEEE---------------CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred Chhhccc--cccCH----HHHHHHHHHcCC-eEEE---------------EecCCCCCHHHHHHHHHHHHHHhh
Confidence 9999876 67776 788899999986 8999 999999999999999999987654
No 7
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.78 E-value=4.7e-19 Score=142.30 Aligned_cols=114 Identities=15% Similarity=0.169 Sum_probs=92.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+.. .....|++++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 55 i~D~~g~~~~~~------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~ilv~n 117 (169)
T 3q85_A 55 VYDIWEQGDAGG------WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR-----------PHHDLPVILVGN 117 (169)
T ss_dssp EECCCCC--------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-----------TTSCCCEEEEEE
T ss_pred EEECCCccccch------hhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcc-----------cCCCCCEEEEee
Confidence 577777653321 134468999999999999999999999999999998852 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... +.++. +++.++++..++ ++++ |||++|.|++++|+++++.+.++
T Consensus 118 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 118 KSDLARS--REVSL----EEGRHLAGTLSC-KHIE---------------TSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred Ccchhhc--ccCCH----HHHHHHHHHcCC-cEEE---------------ecCccCCCHHHHHHHHHHHHHhc
Confidence 9999866 67777 889999999997 8999 99999999999999999988765
No 8
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.78 E-value=1e-18 Score=144.91 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=96.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+. .....|++++|++|+|||++++.+|+.+ ..|+..+... ..++|++|||
T Consensus 75 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~~p~ilv~ 134 (194)
T 3reg_A 75 LWDTAGQEEYD-------RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-------------IDTAKTVLVG 134 (194)
T ss_dssp EEEECCSGGGT-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------CTTSEEEEEE
T ss_pred EEECCCcHHHH-------HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 68888776543 3456799999999999999999999998 6899998875 2348999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
||+||.....+.+.. +++.++++.+++..+++ |||++|.||+++|+++++.+.++.
T Consensus 135 nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 135 LKVDLRKDGSDDVTK----QEGDDLCQKLGCVAYIE---------------ASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp ECGGGCCTTTTCCCH----HHHHHHHHHHTCSCEEE---------------CBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred EChhhccCCCCcccH----HHHHHHHHhcCCCEEEE---------------eecCCCCCHHHHHHHHHHHHHhcC
Confidence 999998654466776 88999999999855999 999999999999999999887643
No 9
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.77 E-value=6.8e-19 Score=148.10 Aligned_cols=114 Identities=23% Similarity=0.356 Sum_probs=97.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....||+++|++|+|||++++.+|+.+..|+.++..+. ..++|++||||
T Consensus 82 i~Dt~G~~~~~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~N 142 (201)
T 2hup_A 82 IWDTAGQERFR-------TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA------------GSNIVQLLIGN 142 (201)
T ss_dssp EECCTTCGGGH-------HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEECCCcHhHH-------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 68887776443 235679999999999999999999999999999998852 24589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++.++++..++..+++ |||++|.||+++|+++++.+.++.
T Consensus 143 K~Dl~~~--~~v~~----~~~~~~~~~~~~~~~~~---------------~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 143 KSDLSEL--REVSL----AEAQSLAEHYDILCAIE---------------TSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTCSEEEE---------------CBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCccccc--cccCH----HHHHHHHHHcCCCEEEE---------------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999876 67776 88999999999767889 999999999999999999998753
No 10
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=149.06 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=94.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||..|++.+.. ...+.||+++|++|||||++++.||+.+..|+.++.... ....+|+|||||
T Consensus 76 i~Dt~g~~~~~~------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 138 (195)
T 3cbq_A 76 VYDIWEQGDAGG------WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR-----------PHHDLPVILVGN 138 (195)
T ss_dssp EECCCCCSGGGH------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-----------TTSCCCEEEEEE
T ss_pred EEecCCCccchh------hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEee
Confidence 577766653320 134568999999999999999999999999999998752 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... +.++. +++.++++.+++ .++| |||++|.||+++|+++++.+.++
T Consensus 139 K~Dl~~~--~~v~~----~~~~~~a~~~~~-~~~e---------------~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 139 KSDLARS--REVSL----EEGRHLAGTLSC-KHIE---------------TSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp CTTCTTT--CCSCH----HHHHHHHHHTTC-EEEE---------------EBTTTTBSHHHHHHHHHHHHHTT
T ss_pred chhcccc--CCcCH----HHHHHHHHHhCC-EEEE---------------EcCCCCCCHHHHHHHHHHHHHHh
Confidence 9999876 67776 888999999986 8999 99999999999999999988654
No 11
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=5.4e-19 Score=152.72 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=92.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||+.++++.. ....+.||++++++|+|||++++.||+.+..|+.++.... ...++|+|||||
T Consensus 91 ~~Dt~g~~~~~------~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-----------~~~~~piilVgN 153 (211)
T 2g3y_A 91 LLDMWENKGEN------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-----------QTEDIPIILVGN 153 (211)
T ss_dssp EECCTTTTHHH------HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-----------GGTTSCEEEEEE
T ss_pred EeecCCCcchh------hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-----------CCCCCcEEEEEE
Confidence 56666554311 1234579999999999999999999999999998887521 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++..++...++ .|+| ||||+|.||+++|+++++.+.++.
T Consensus 154 K~DL~~~--r~v~~----~e~~~~a~~~~~-~~~e---------------~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 154 KSDLVRC--REVSV----SEGRACAVVFDC-KFIE---------------TSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ChHHhcC--ceEeH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999866 67776 788889999986 8999 999999999999999999886543
No 12
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=1e-18 Score=142.66 Aligned_cols=112 Identities=13% Similarity=0.222 Sum_probs=95.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.||+.+..|+.++.... ....+|++||||
T Consensus 70 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~ilv~n 131 (183)
T 3kkq_A 70 VLDTAGQEEFS-------AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK-----------DRESFPMILVAN 131 (183)
T ss_dssp EEECCSCGGGC-------SSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-----------TSSCCCEEEEEE
T ss_pred EEECCCchhhH-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEEE
Confidence 58877766433 245679999999999999999999999999999997732 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeee-cCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk-~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.++. +++.++++++++ ++++ |||+ ++.||+++|+.+.+.+.+
T Consensus 132 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 132 KVDLMHL--RKVTR----DQGKEMATKYNI-PYIE---------------TSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CTTCSTT--CCSCH----HHHHHHHHHHTC-CEEE---------------EBCSSSCBSHHHHHHHHHHHHHH
T ss_pred CCCchhc--cCcCH----HHHHHHHHHhCC-eEEE---------------eccCCCCCCHHHHHHHHHHHHhh
Confidence 9999876 77877 889999999996 8999 9999 999999999999998865
No 13
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=1.1e-18 Score=142.25 Aligned_cols=114 Identities=13% Similarity=0.150 Sum_probs=94.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 58 l~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~ilv~n 119 (181)
T 3t5g_A 58 LVDTAGQDEYS-------IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV-----------GKVQIPIMLVGN 119 (181)
T ss_dssp EEECCCCCTTC-------CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---------------CCEEEEEE
T ss_pred EEeCCCchhhh-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 67777766432 245679999999999999999999999999999998752 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++.++++..++ ++++ +||++|.|++++|+++++.+.+..
T Consensus 120 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 120 KKDLHME--RVISY----EEGKALAESWNA-AFLE---------------SSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp CTTCTTT--CCSCH----HHHHHHHHHTTC-EEEE---------------CCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred Cccchhc--ceecH----HHHHHHHHHhCC-cEEE---------------EecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999876 77877 889999999997 8999 999999999999999998887643
No 14
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=137.75 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=96.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++... ..++|++||||
T Consensus 62 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-------------~~~~p~ilv~n 121 (181)
T 3tw8_B 62 IWDTAGQERFR-------TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-------------CDDVCRILVGN 121 (181)
T ss_dssp EEEETTGGGCS-------SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-------------CTTSEEEEEEE
T ss_pred EEcCCCchhhh-------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-------------CCCCCEEEEEE
Confidence 67877766433 24567999999999999999999999999999999885 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.+.. +++.++++..++ ++++ +||++|.|++++|+++.+.+.+..
T Consensus 122 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 122 KNDDPER--KVVET----EDAYKFAGQMGI-QLFE---------------TSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-CEEE---------------CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCchh--cccCH----HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876 66776 788999999997 8999 999999999999999999988754
No 15
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.76 E-value=2.3e-18 Score=142.67 Aligned_cols=113 Identities=22% Similarity=0.378 Sum_probs=96.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++..+. ..++|++||+|
T Consensus 74 i~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~------------~~~~piilv~n 134 (191)
T 2a5j_A 74 IWDTAGQESFR-------SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS------------SSNMVIMLIGN 134 (191)
T ss_dssp EECCTTGGGTS-------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEECCCchhhh-------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 68888766433 235679999999999999999999999999999998852 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.+.. +++.+++++.++ .+++ |||++|.||+++|+++++.+.++.
T Consensus 135 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 135 KSDLESR--RDVKR----EEGEAFAREHGL-IFME---------------TSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CcccCCc--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999866 66776 788999999997 8899 999999999999999999998764
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=141.04 Aligned_cols=113 Identities=22% Similarity=0.387 Sum_probs=96.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||||
T Consensus 69 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~p~ilv~n 129 (196)
T 3tkl_A 69 IWDTAGQERFR-------TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA------------SENVNKLLVGN 129 (196)
T ss_dssp EEEECCSGGGC-------TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEECCCcHhhh-------hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 67777765433 245679999999999999999999999999999998853 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.+.. +++.++++..++ ++++ |||++|.||+++|+++++.+.++.
T Consensus 130 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 130 KCDLTTK--KVVDY----TTAKEFADSLGI-PFLE---------------TSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp CTTCTTT--CCSCH----HHHHHHHHHTTC-CEEE---------------ECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-cEEE---------------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999877 67776 788999999997 8999 999999999999999999998764
No 17
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=8.6e-19 Score=145.24 Aligned_cols=113 Identities=20% Similarity=0.328 Sum_probs=97.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||||
T Consensus 76 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 136 (191)
T 3dz8_A 76 IWDTAGQERYR-------TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS------------WDNAQVILVGN 136 (191)
T ss_dssp EECHHHHHHCH-------HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCChHHHH-------HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 68888866443 235679999999999999999999999999999998852 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.+.. +++.++++..++ .+++ |||++|.||+++|+++++.+.++.
T Consensus 137 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 137 KCDMEEE--RVVPT----EKGQLLAEQLGF-DFFE---------------ASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCccc--cccCH----HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHHHHHhc
Confidence 9999876 67776 889999999997 8999 999999999999999999998764
No 18
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.6e-18 Score=140.07 Aligned_cols=112 Identities=11% Similarity=0.169 Sum_probs=93.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+. ...+.||+++|++|+|||++++.||+.+. .|+.++..+ ..++|++|||
T Consensus 70 i~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~~piilv~ 129 (194)
T 2atx_A 70 LYDTAGQEDYD-------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-------------APNVPFLLIG 129 (194)
T ss_dssp EECCCCSSSST-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------STTCCEEEEE
T ss_pred EEECCCCcchh-------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 67777766443 24567999999999999999999999998 899999885 1248999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.++. +++.++++.+++..|++ |||++|.||+++|+++++.
T Consensus 130 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 130 TQIDLRDDPKTLARLNDMKEKPICV----EQGQKLAKEIGACCYVE---------------CSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp ECTTSTTCHHHHHHHTTTTCCCCCH----HHHHHHHHHHTCSCEEE---------------CCTTTCTTHHHHHHHHHHH
T ss_pred EChhhcccccchhhcccccCcccCH----HHHHHHHHHcCCcEEEE---------------eeCCCCCCHHHHHHHHHHH
Confidence 999997631 145666 88999999999768999 9999999999999999988
Q ss_pred HH
Q 025248 151 LI 152 (255)
Q Consensus 151 li 152 (255)
++
T Consensus 191 i~ 192 (194)
T 2atx_A 191 IL 192 (194)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 19
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.76 E-value=1.3e-18 Score=148.31 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=95.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHH-HHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTS-LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~-l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+. ...+.||+++|++|+|||++++.||++ +..|+.++... ..++|++|||
T Consensus 79 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------~~~~piilv~ 138 (214)
T 3q3j_B 79 LWDTSGSPYYD-------NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-------------CPSTRVLLIG 138 (214)
T ss_dssp EEEECCSGGGT-------TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH-------------CTTSEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 68888876543 245679999999999999999999999 68999999885 2358999999
Q ss_pred eCCCCCCC----------CCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC-HHHHHHHHHH
Q 025248 81 NKADVAAK----------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY-DKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~----------~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n-v~e~f~~l~~ 149 (255)
||+||..+ ..+.++. +++.+++++.++..|+| |||++|.| |+++|+.+++
T Consensus 139 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~SA~~g~g~v~~lf~~l~~ 199 (214)
T 3q3j_B 139 CKTDLRTDLSTLMELSHQKQAPISY----EQGCAIAKQLGAEIYLE---------------GSAFTSEKSIHSIFRTASM 199 (214)
T ss_dssp ECGGGGGCHHHHHHHHHTTCCCCCH----HHHHHHHHHHTCSEEEE---------------CCTTTCHHHHHHHHHHHHH
T ss_pred EChhhccchhhhhhhcccccCccCH----HHHHHHHHHcCCCEEEE---------------eccCCCcccHHHHHHHHHH
Confidence 99999752 1256776 88999999999768999 99999998 9999999998
Q ss_pred HHHHHh
Q 025248 150 MLIRRR 155 (255)
Q Consensus 150 ~li~~~ 155 (255)
.+.++.
T Consensus 200 ~~~~~~ 205 (214)
T 3q3j_B 200 LCLNKP 205 (214)
T ss_dssp HHHC--
T ss_pred HHhccC
Confidence 887654
No 20
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.5e-18 Score=145.83 Aligned_cols=113 Identities=22% Similarity=0.306 Sum_probs=96.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. .....||+++|++|+|||++++.+|+.+..|+.++.... ...+|++||||
T Consensus 79 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~N 139 (201)
T 2ew1_A 79 IWDTAGQERFR-------SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA------------SNKVITVLVGN 139 (201)
T ss_dssp EEEECCSGGGH-------HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEECCCcHHHH-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 67777765433 235679999999999999999999999999999998752 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.+.. +++.++++..++ .+++ |||++|.||+++|+++++.+.++.
T Consensus 140 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 140 KIDLAER--REVSQ----QRAEEFSEAQDM-YYLE---------------TSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp CGGGGGG--CSSCH----HHHHHHHHHHTC-CEEE---------------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCccc--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999866 66776 788899999986 8999 999999999999999999998764
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.75 E-value=2e-18 Score=138.45 Aligned_cols=111 Identities=19% Similarity=0.338 Sum_probs=90.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||+|
T Consensus 59 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~piilv~n 119 (170)
T 1z08_A 59 IWDTAGQERFH-------ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML------------GNEICLCIVGN 119 (170)
T ss_dssp EEECCCC--------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH------------GGGSEEEEEEE
T ss_pred EEECCCcHhhh-------hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCeEEEEEE
Confidence 67777765432 234579999999999999999999999999999987742 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.++. +++.++++..++ ++++ +||++|.|++++|+++++.+.+
T Consensus 120 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 120 KIDLEKE--RHVSI----QEAESYAESVGA-KHYH---------------TSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------EBTTTTBSHHHHHHHHHHHHHC
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-eEEE---------------ecCCCCCCHHHHHHHHHHHHhh
Confidence 9999876 66776 788999999986 8899 9999999999999999988753
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=4.8e-18 Score=137.72 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=90.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||+|
T Consensus 64 ~~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 124 (180)
T 2g6b_A 64 MWDTAGQERFR-------SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA------------QHDVALMLLGN 124 (180)
T ss_dssp EEECCCC---------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCCcHHHH-------HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 57777765433 245679999999999999999999999999999998852 24589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... +.+.. +++.++++..++ ++++ +||++|.|++++|+++.+.+.++
T Consensus 125 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 125 KVDSAHE--RVVKR----EDGEKLAKEYGL-PFME---------------TSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp CCSTTSC--CCSCH----HHHHHHHHHHTC-CEEE---------------CCTTTCTTHHHHHHHHHHHHHC-
T ss_pred CcccCcc--cccCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999876 66776 788899999997 8999 99999999999999999888653
No 23
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.75 E-value=2.1e-18 Score=139.09 Aligned_cols=111 Identities=25% Similarity=0.411 Sum_probs=93.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||+++..+|+.+..|+.++.... ..++|++||+|
T Consensus 68 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~piilv~n 128 (179)
T 1z0f_A 68 IWDTAGQERFR-------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT------------NPNTVIILIGN 128 (179)
T ss_dssp EEECTTGGGTC-------HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEECCCChHhh-------hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 67777765332 245679999999999999999999999999999998852 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.+.. +++.+++++.++ .+++ +||++|.|++++|+++++.+.+
T Consensus 129 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 129 KADLEAQ--RDVTY----EEAKQFAEENGL-LFLE---------------ASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHhh
Confidence 9999866 66766 789999999986 8899 9999999999999999988754
No 24
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.75 E-value=6.6e-18 Score=139.38 Aligned_cols=113 Identities=19% Similarity=0.344 Sum_probs=95.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||+|
T Consensus 75 l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 135 (189)
T 2gf9_A 75 IWDTAGQERYR-------TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS------------WDNAQVILVGN 135 (189)
T ss_dssp EEECCSCCSSC-------CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCCcHHHh-------hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 57777755332 245679999999999999999999999999999998852 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.+.. +++.+++++.++ .+++ +||++|.|++++|+++++.+.++.
T Consensus 136 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 136 KCDLEDE--RVVPA----EDGRRLADDLGF-EFFE---------------ASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--cCCCH----HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876 66666 788999999997 8899 999999999999999999987753
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=3.8e-18 Score=139.28 Aligned_cols=113 Identities=20% Similarity=0.330 Sum_probs=96.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||||
T Consensus 63 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~piilv~n 123 (186)
T 2bme_A 63 IWDTAGQERFR-------SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA------------SQNIVIILCGN 123 (186)
T ss_dssp EEEECCSGGGH-------HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCCcHHHH-------HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 68877766443 235679999999999999999999999999999988752 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.++. +++.++++..++ .+++ |||++|.|++++|+++++.+.++.
T Consensus 124 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 124 KKDLDAD--REVTF----LEASRFAQENEL-MFLE---------------TSALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-EEEE---------------ecCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999866 66776 788899999986 8899 999999999999999999998764
No 26
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.75 E-value=4.5e-18 Score=142.61 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=91.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||+.++++.. ....+.||+++|++|+|||+++++||+.+..|+..+.... ....+|+|||||
T Consensus 60 ~~Dt~~~~~~~------~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~-----------~~~~~piilV~N 122 (192)
T 2cjw_A 60 LLDMWENKGEN------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-----------QTEDIPIILVGN 122 (192)
T ss_dssp EECCCCC----------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT-----------TTSCCCEEEEEE
T ss_pred EEEeccCcchh------hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-----------CCCCCeEEEEEe
Confidence 56666554321 1245679999999999999999999999999998887641 023489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.+.. +++..++...++ .|+| |||++|.||+++|+++++.+..+.
T Consensus 123 K~Dl~~~--r~v~~----~~~~~~a~~~~~-~~~e---------------~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 123 KSDLVRX--REVSV----SEGRAXAVVFDX-KFIE---------------TSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred chhhhcc--ccccH----HHHHHHHHHhCC-ceEE---------------eccccCCCHHHHHHHHHHHHHhhc
Confidence 9999865 66776 778888888886 8999 999999999999999999886543
No 27
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.75 E-value=6.6e-18 Score=140.39 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=95.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. ...+.||+++|++|+|||++++.+|+.+. .|+.++..+. .++|++|||
T Consensus 72 i~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ilv~ 131 (201)
T 2q3h_A 72 LCDTAGQDEFD-------KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-------------PKAPIILVG 131 (201)
T ss_dssp EEECCCSTTCS-------SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------SSSCEEEEE
T ss_pred EEECCCCHHHH-------HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEE
Confidence 68777766443 23567999999999999999999999997 8999998852 258999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.+.. +++.++++..++..|++ |||++|.||+++|+++++.
T Consensus 132 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 132 TQSDLREDVKVLIELDKCKEKPVPE----EAAKLLAEEIKAASYIE---------------CSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp ECGGGGGCHHHHHHHHTTTCCCCCH----HHHHHHHHHHTCSEEEE---------------CCTTTCTTHHHHHHHHHHH
T ss_pred ECHhhhhchhhhhhhcccccccCCH----HHHHHHHHhcCCcEEEE---------------EecCCCCCHHHHHHHHHHH
Confidence 999997531 145666 78899999998768899 9999999999999999999
Q ss_pred HHHHh
Q 025248 151 LIRRR 155 (255)
Q Consensus 151 li~~~ 155 (255)
+.+..
T Consensus 193 ~~~~~ 197 (201)
T 2q3h_A 193 GIQYS 197 (201)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 88764
No 28
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.75 E-value=1.5e-17 Score=139.08 Aligned_cols=113 Identities=20% Similarity=0.352 Sum_probs=96.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|||||++++.+|+.+..|+.++.... ...+|++||||
T Consensus 61 l~Dt~G~~~~~-------~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 121 (206)
T 2bcg_Y 61 IWDTAGQERFR-------TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA------------TSTVLKLLVGN 121 (206)
T ss_dssp EECCTTTTTTT-------CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCChHHHH-------HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 67777765332 245679999999999999999999999999999998752 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.+.. +++.++++..++ ++++ +||++|.||+++|+++.+.+.++.
T Consensus 122 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 122 KCDLKDK--RVVEY----DVAKEFADANKM-PFLE---------------TSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp CTTCTTT--CCSCH----HHHHHHHHHTTC-CEEE---------------CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCccc--cccCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999876 66776 788899999987 8999 999999999999999999998753
No 29
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=5.1e-18 Score=141.28 Aligned_cols=114 Identities=21% Similarity=0.328 Sum_probs=97.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|.+.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||||
T Consensus 61 l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 121 (203)
T 1zbd_A 61 IWDTAGLERYR-------TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS------------WDNAQVLLVGN 121 (203)
T ss_dssp EEEECCSGGGH-------HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------------CSSCEEEEEEE
T ss_pred EEECCCchhhc-------chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 67777766433 235679999999999999999999999999999998752 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+||... +.+.. +++.++++.+++ ++++ |||++|.||+++|+++++.+.++..
T Consensus 122 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 122 KCDMEDE--RVVSS----ERGRQLADHLGF-EFFE---------------ASAKDNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp CTTCTTS--CCSCH----HHHHHHHHHHTC-EEEE---------------CBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred CcccCcc--cccCH----HHHHHHHHHCCC-eEEE---------------EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999876 66776 888999999997 8899 9999999999999999999987654
No 30
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=143.33 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=94.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. .....|++++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 76 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 137 (201)
T 3oes_A 76 LVDTAGQDEYS-------ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH-----------GKTRVPVVLVGN 137 (201)
T ss_dssp EEEECCCCTTC-------CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC----------------CCCEEEEEE
T ss_pred EEECCCccchH-------HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 67777765433 245679999999999999999999999999999998732 133589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.+.. +++.++++..++ ++++ +||++|.||+++|+++++.+.+..
T Consensus 138 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 138 KADLSPE--REVQA----VEGKKLAESWGA-TFME---------------SSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------CCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred CccCccc--cccCH----HHHHHHHHHhCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999876 67776 889999999997 8999 999999999999999999887754
No 31
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=142.14 Aligned_cols=114 Identities=22% Similarity=0.331 Sum_probs=97.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||||
T Consensus 78 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~piilv~n 138 (200)
T 2o52_A 78 IWDTAGQERFR-------SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA------------SPNIVVILCGN 138 (200)
T ss_dssp EECCTTHHHHS-------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT------------CTTCEEEEEEE
T ss_pred EEcCCCcHhHH-------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 68888876443 235679999999999999999999999999999998752 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+|+... +.++. +++.++++..++ .+++ |||++|.||+++|+++++.+.++..
T Consensus 139 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 139 KKDLDPE--REVTF----LEASRFAQENEL-MFLE---------------TSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------ECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcccc--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999866 66776 788899999986 8899 9999999999999999999987643
No 32
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.74 E-value=3.3e-18 Score=140.96 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=92.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.||+++ ..|+.++..+ ...+|++|||
T Consensus 59 i~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------~~~~piilv~ 118 (184)
T 1m7b_A 59 LWDTSGSPYYD-------NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-------------CPNTKMLLVG 118 (184)
T ss_dssp EEEECCSGGGT-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------CTTCEEEEEE
T ss_pred EEECCCChhhh-------hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH-------------CCCCCEEEEE
Confidence 68888876543 2355799999999999999999999999 6999999875 2348999999
Q ss_pred eCCCCCCC----------CCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeee-cCCCHHHHHHHHHH
Q 025248 81 NKADVAAK----------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~----------~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk-~g~nv~e~f~~l~~ 149 (255)
||+|+... ..+.++. +++.+++++++...|+| |||+ ++.||+++|+.+++
T Consensus 119 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 119 CKSDLRTDVSTLVELSNHRQTPVSY----DQGANMAKQIGAATYIE---------------CSALQSENSVRDIFHVATL 179 (184)
T ss_dssp ECGGGGGCHHHHHHHHTTTCCCCCH----HHHHHHHHHHTCSEEEE---------------CBTTTBHHHHHHHHHHHHH
T ss_pred EcchhhcchhhHhhhhhcccCCCCH----HHHHHHHHHcCCcEEEE---------------eeecCCCcCHHHHHHHHHH
Confidence 99999742 1256776 88999999988658999 9999 68899999999988
Q ss_pred HHHH
Q 025248 150 MLIR 153 (255)
Q Consensus 150 ~li~ 153 (255)
.+++
T Consensus 180 ~~l~ 183 (184)
T 1m7b_A 180 ACVN 183 (184)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8764
No 33
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.74 E-value=2.5e-18 Score=140.71 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=91.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECC------ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLS------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT------~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP 75 (255)
+||++|++.+. ...+.||+++|++|+|||++ +.++|+.+..|+.++... ..++|
T Consensus 78 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-------------~~~~p 137 (198)
T 3t1o_A 78 LYTVPGQVFYN-------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-------------LDDVP 137 (198)
T ss_dssp EEECCSCCSCS-------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-------------TTSSC
T ss_pred EEeCCChHHHH-------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-------------cCCCC
Confidence 57776665332 24557999999999999999 778999999999888431 34599
Q ss_pred EEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 76 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 76 iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
++|||||+||... ++. +++.+++++.++..+++ |||++|.||+++|+++++.+.++.
T Consensus 138 iilv~NK~Dl~~~----~~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 138 IVIQVNKRDLPDA----LPV----EMVRAVVDPEGKFPVLE---------------AVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp EEEEEECTTSTTC----CCH----HHHHHHHCTTCCSCEEE---------------CBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEchhcccc----cCH----HHHHHHHHhcCCceEEE---------------EecCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999753 455 78889999888768889 999999999999999999998865
No 34
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.74 E-value=3.3e-18 Score=142.06 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=91.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .+..||+++|++|+|||+++++||+.+..|+.++..... .....+|+|||||
T Consensus 73 i~Dt~G~~~~~--------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---------~~~~~~piilv~n 135 (187)
T 3c5c_A 73 VMDTADLDTPR--------NCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK---------ETQRSIPALLLGN 135 (187)
T ss_dssp EEECCC---CC--------CTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHH---------HHCCCCCEEEEEE
T ss_pred EEECCCCCcch--------hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhh---------ccCCCCCEEEEEE
Confidence 57777765432 245699999999999999999999999999999987410 0013489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceee-ecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAA-KEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSA-k~g~nv~e~f~~l~~~li~ 153 (255)
|+||... +.++. +++.++++++++ .|+| ||| ++|.||+++|+.+++.+.+
T Consensus 136 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~e---------------~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 136 KLDMAQY--RQVTK----AEGVALAGRFGC-LFFE---------------VSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CGGGGGG--CSSCH----HHHHHHHHHHTC-EEEE---------------CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred Ccchhhc--CccCH----HHHHHHHHHcCC-cEEE---------------EeecCccccHHHHHHHHHHHHhh
Confidence 9999876 67777 889999999997 8999 999 8999999999999887743
No 35
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=4.4e-18 Score=135.78 Aligned_cols=109 Identities=21% Similarity=0.320 Sum_probs=91.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||||
T Consensus 59 ~~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~iilv~n 119 (170)
T 1r2q_A 59 IWDTAGQERYH-------SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA------------SPNIVIALSGN 119 (170)
T ss_dssp EEEECCSGGGG-------GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCCcHHhh-------hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 67777766433 235678999999999999999999999999999998852 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.++. +++.++++..++ ++++ +||++|.|++++|+++.+.+
T Consensus 120 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 120 KADLANK--RAVDF----QEAQSYADDNSL-LFME---------------TSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CCTTTCTTHHHHHHHHHHTS
T ss_pred CccCccc--cccCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHH
Confidence 9999866 66666 788899999886 8899 99999999999999888754
No 36
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=9.7e-18 Score=134.08 Aligned_cols=111 Identities=20% Similarity=0.390 Sum_probs=93.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||+|
T Consensus 56 l~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 116 (170)
T 1g16_A 56 IWDTAGQERFR-------TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA------------NDEAQLLLVGN 116 (170)
T ss_dssp EECCTTGGGTS-------CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCCChhhh-------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 68877766433 245679999999999999999999999999999998852 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+. . +.+.. +++.++++++++ ++++ +||++|.|++++|+++.+.+.++
T Consensus 117 K~Dl~-~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 117 KSDME-T--RVVTA----DQGEALAKELGI-PFIE---------------SSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CTTCT-T--CCSCH----HHHHHHHHHHTC-CEEE---------------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CccCC-c--CccCH----HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHHHHHH
Confidence 99993 3 45665 788899999997 8999 99999999999999999988764
No 37
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=6.2e-18 Score=137.17 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=92.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||+|
T Consensus 65 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~p~i~v~n 125 (181)
T 2efe_B 65 IWDTAGQERYH-------SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG------------NPNMVMALAGN 125 (181)
T ss_dssp EEECCCSGGGG-------GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCCChhhh-------hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 67777765433 245679999999999999999999999999999998852 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.+.. +++.++++..++ ++++ +||++|.|++++|+++++.+.+
T Consensus 126 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 126 KSDLLDA--RKVTA----EDAQTYAQENGL-FFME---------------TSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CTTCTTT--CCSCH----HHHHHHHHHTTC-EEEE---------------CCSSSCTTHHHHHHHHHHTCC-
T ss_pred CCccccc--ccCCH----HHHHHHHHHcCC-EEEE---------------EECCCCCCHHHHHHHHHHHHHh
Confidence 9999866 66766 788999999986 8889 9999999999999998876644
No 38
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.74 E-value=3.7e-18 Score=138.60 Aligned_cols=110 Identities=17% Similarity=0.264 Sum_probs=90.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+++. .|+.++..+. .++|++|||
T Consensus 60 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~ 119 (182)
T 3bwd_D 60 LWDTAGQEDYN-------RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-------------PGVPIVLVG 119 (182)
T ss_dssp EECCCC-CTTT-------TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCCEEEEE
T ss_pred EEECCCChhhh-------hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEE
Confidence 67777766433 34567999999999999999999999998 7999998851 248999999
Q ss_pred eCCCCCCCCCCc----------cCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTR----------GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~~r~----------Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+|+... +. ++. +++.++++..++.+|++ |||++|.|++++|+.+.+.
T Consensus 120 nK~Dl~~~--~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 120 TKLDLRDD--KQFFIDHPGAVPITT----VQGEELKKLIGAPAYIE---------------CSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp ECHHHHTC--HHHHHHC--CCCCCH----HHHHHHHHHHTCSEEEE---------------CCTTTCTTHHHHHHHHHHH
T ss_pred echhhhcC--cccccccccCCCCCH----HHHHHHHHHcCCCEEEE---------------EECCCCCCHHHHHHHHHHH
Confidence 99999765 33 355 77889999999768899 9999999999999999887
Q ss_pred HH
Q 025248 151 LI 152 (255)
Q Consensus 151 li 152 (255)
++
T Consensus 179 i~ 180 (182)
T 3bwd_D 179 VL 180 (182)
T ss_dssp HS
T ss_pred Hh
Confidence 64
No 39
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=1.6e-18 Score=140.37 Aligned_cols=114 Identities=16% Similarity=0.258 Sum_probs=92.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVG 80 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++..... .....| ++|||
T Consensus 60 ~~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----------~~~~~~~iilv~ 122 (178)
T 2hxs_A 60 IWDIGGQTIGG-------KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE----------ESETQPLVALVG 122 (178)
T ss_dssp EEECTTCCTTC-------TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHH----------HHTCCCEEEEEE
T ss_pred EEECCCCcccc-------chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc----------ccCCCCeEEEEE
Confidence 57777765332 2456799999999999999999999999999999877310 011245 89999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
||+|+... +.++. +++.++++..++ ++++ +||++|.||+++|+++.+.+.+.
T Consensus 123 nK~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 123 NKIDLEHM--RTIKP----EKHLRFCQENGF-SSHF---------------VSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp ECGGGGGG--CSSCH----HHHHHHHHHHTC-EEEE---------------ECTTTCTTHHHHHHHHHHHHTTC
T ss_pred Eccccccc--cccCH----HHHHHHHHHcCC-cEEE---------------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999876 66776 788999999997 8899 99999999999999999887654
No 40
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.74 E-value=6e-18 Score=140.13 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=86.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++..+... ....+|++||||
T Consensus 77 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---------~~~~~piilv~n 140 (208)
T 2yc2_C 77 LLDTAGSDLYK-------EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD---------RERPLRAVLVAN 140 (208)
T ss_dssp EEETTTTHHHH-------HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSC---------TTSCCEEEEEEE
T ss_pred EEECCCcHHHH-------HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcc---------cccCCcEEEEEE
Confidence 68888776443 24567999999999999999999999999999999886310 013589999999
Q ss_pred CCCCCC-CCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeec-CCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAA-KEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE-ARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~-~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~-g~nv~e~f~~l~~~li~~ 154 (255)
|+|+.. . +.++. +++.++++++++ .+++ |||++ |.|++++|+++++.+.+.
T Consensus 141 K~Dl~~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 141 KTDLPPQR--HQVRL----DMAQDWATTNTL-DFFD---------------VSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp CC---------CCCH----HHHHHHHHHTTC-EEEE---------------CCC-------CHHHHHHHHHHHHH
T ss_pred Ccccchhh--ccCCH----HHHHHHHHHcCC-EEEE---------------eccCCCCcCHHHHHHHHHHHHHHH
Confidence 999987 5 67776 889999999996 8899 99999 999999999999988764
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.73 E-value=5.8e-18 Score=136.69 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=94.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...++|++||||
T Consensus 61 ~~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~n 122 (181)
T 2fn4_A 61 ILDTAGQEEFG-------AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-----------DRDDFPVVLVGN 122 (181)
T ss_dssp EEECCCTTTTS-------CCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-----------TSSCCCEEEEEE
T ss_pred EEECCCchhhH-------HHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 57777755332 245679999999999999999999999999999986531 133589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.++. +++.++++..++ .+++ +||++|.|++++|+++.+.+.+..
T Consensus 123 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 123 KADLESQ--RQVPR----SEASAFGASHHV-AYFE---------------ASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-eEEE---------------ecCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999876 66776 788899999887 8899 999999999999999999987654
No 42
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.5e-18 Score=144.00 Aligned_cols=113 Identities=18% Similarity=0.315 Sum_probs=92.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||||
T Consensus 66 i~Dt~G~~~~~-------~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~------------~~~~piilv~n 126 (223)
T 3cpj_B 66 IWDTAGQERYR-------AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA------------DDNVAVGLIGN 126 (223)
T ss_dssp EECCTTTTTTT-------CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC------------C--CEEEEEEC
T ss_pred EEECCCccchh-------hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC------------CCCCeEEEEEE
Confidence 68877766432 245679999999999999999999999999999998752 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.++. +++.++++..++ .+++ +||++|.||+++|+++++.+.++.
T Consensus 127 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 127 KSDLAHL--RAVPT----EESKTFAQENQL-LFTE---------------TSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876 66776 788899999886 8899 999999999999999999887643
No 43
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=2.7e-18 Score=136.43 Aligned_cols=112 Identities=15% Similarity=0.242 Sum_probs=92.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ....+|++||+|
T Consensus 56 l~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 117 (168)
T 1u8z_A 56 ILDTAGQEDYA-------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-----------EDENVPFLLVGN 117 (168)
T ss_dssp EEECCC---CH-------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-----------CCTTSCEEEEEE
T ss_pred EEECCCcchhH-------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEEE
Confidence 57777655332 245679999999999999999999999999999998852 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.++. +++.++++..++ ++++ +||++|.|++++|+++.+.+.+
T Consensus 118 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 118 KSDLEDK--RQVSV----EEAKNRADQWNV-NYVE---------------TSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred Ccccccc--CccCH----HHHHHHHHHcCC-eEEE---------------eCCCCCCCHHHHHHHHHHHHHh
Confidence 9999876 56766 889999999997 8899 9999999999999999988754
No 44
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3.1e-18 Score=142.40 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=96.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++. ......|++++|++|+|||++++++|+.+..|+.++.... ....+|++||||
T Consensus 80 l~Dt~G~~~--------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~N 140 (196)
T 2atv_A 80 ILDTAGQED--------TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK-----------KPKNVTLILVGN 140 (196)
T ss_dssp EEECCCCCC--------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-----------TTSCCCEEEEEE
T ss_pred EEECCCCCc--------ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhh-----------CCCCCcEEEEEE
Confidence 677777653 3345679999999999999999999999999999998742 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCC-CHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~-nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.++. +++.+++++.++ ++++ |||++|. ||+++|+++++.+.++.
T Consensus 141 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 141 KADLDHS--RQVST----EEGEKLATELAC-AFYE---------------CSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHHTS-EEEE---------------CCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--cccCH----HHHHHHHHHhCC-eEEE---------------ECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 9999876 67776 888999999986 8999 9999999 99999999999998764
No 45
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.73 E-value=4.1e-18 Score=143.04 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=92.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+. ...+.||+++|++|||||++++.+|+++. .|+.++..+. .++|++|||
T Consensus 61 i~Dt~G~~~~~-------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~ 120 (212)
T 2j0v_A 61 LWDTAGQEDYS-------RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-------------PNVPIVLVG 120 (212)
T ss_dssp EECCCCCCCCC-------C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTCCEEEEE
T ss_pred EEECCCcHHHH-------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------------CCCCEEEEE
Confidence 67777776443 24567999999999999999999999997 8999998851 248999999
Q ss_pred eCCCCCCCCCCc--------cCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTR--------GSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 81 NK~DL~~~~~r~--------Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
||+||... +. ++. +++.++++.+++..|++ |||++|.||+++|+++++.+.
T Consensus 121 nK~Dl~~~--~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 121 TKLDLRDD--KGYLADHTNVITS----TQGEELRKQIGAAAYIE---------------CSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp ECHHHHTC--HHHHHTCSSCCCH----HHHHHHHHHHTCSEEEE---------------CCTTTCTTHHHHHHHHHHHHH
T ss_pred eCHHhhhC--ccccccccCCCCH----HHHHHHHHHcCCceEEE---------------ccCCCCCCHHHHHHHHHHHHh
Confidence 99999765 32 355 78889999999768999 999999999999999999887
Q ss_pred HH
Q 025248 153 RR 154 (255)
Q Consensus 153 ~~ 154 (255)
+.
T Consensus 180 ~~ 181 (212)
T 2j0v_A 180 QP 181 (212)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.73 E-value=4.6e-18 Score=137.98 Aligned_cols=115 Identities=17% Similarity=0.259 Sum_probs=96.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ....+|++||+|
T Consensus 70 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 131 (187)
T 2a9k_A 70 ILDTAGQEDYA-------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-----------EDENVPFLLVGN 131 (187)
T ss_dssp EEECCCTTCCH-------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-----------CCTTCCEEEEEE
T ss_pred EEECCCCcccH-------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 57777655332 245679999999999999999999999999999998852 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|+|+... +.+.. +++.++++..++ ++++ +||+++.||+++|+++.+.+.+++.
T Consensus 132 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 132 KSDLEDK--RQVSV----EEAKNRAEQWNV-NYVE---------------TSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--CccCH----HHHHHHHHHcCC-eEEE---------------eCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999876 66666 788999999997 8899 9999999999999999999987653
No 47
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=6e-18 Score=135.06 Aligned_cols=110 Identities=14% Similarity=0.242 Sum_probs=93.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... .++|++||+|
T Consensus 58 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~piilv~n 117 (168)
T 1z2a_A 58 LWDTAGQEEFD-------AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-------------GDIPTALVQN 117 (168)
T ss_dssp EECCTTGGGTT-------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-------------CSCCEEEEEE
T ss_pred EEcCCCcHhHH-------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-------------CCCCEEEEEE
Confidence 67877766432 245679999999999999999999999999999998751 3489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.+.. +++.+++++.++ ++++ +||++|.|++++|+++.+.+.+
T Consensus 118 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 118 KIDLLDD--SCIKN----EEAEGLAKRLKL-RFYR---------------TSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp CGGGGGG--CSSCH----HHHHHHHHHHTC-EEEE---------------CBTTTTBSSHHHHHHHHHHHHC
T ss_pred CcccCcc--cccCH----HHHHHHHHHcCC-eEEE---------------EecCCCCCHHHHHHHHHHHHhh
Confidence 9999876 56666 788899999997 8899 9999999999999999988764
No 48
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.73 E-value=1e-17 Score=136.44 Aligned_cols=114 Identities=18% Similarity=0.357 Sum_probs=95.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++..+.. ...+|++||+|
T Consensus 74 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~n 135 (195)
T 3bc1_A 74 LWDTAGLERFR-------SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-----------SENPDIVLCGN 135 (195)
T ss_dssp EEEECCSGGGH-------HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-----------SSSCCEEEEEE
T ss_pred EEeCCCcHHHH-------HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEE
Confidence 57776665332 2356789999999999999999999999999999988531 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.+.. +++.++++..++ ++++ +||++|.|++++|+++.+.+.++.
T Consensus 136 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 136 KSDLEDQ--RAVKE----EEARELAEKYGI-PYFE---------------TSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-CEEE---------------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-CEEE---------------EECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876 56666 788999999997 8999 999999999999999999998764
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.73 E-value=2.4e-17 Score=133.22 Aligned_cols=119 Identities=18% Similarity=0.299 Sum_probs=89.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++....... ....+|++||||
T Consensus 62 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~n 126 (182)
T 1ky3_A 62 VWDTAGQERFQ-------SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN--------SPETFPFVILGN 126 (182)
T ss_dssp EECCC-----------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS--------CTTTCCEEEEEE
T ss_pred EEECCCChHhh-------hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc--------CcCCCcEEEEEE
Confidence 57777655433 234569999999999999999999999999999998753211 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+.... +.+.. +++.++++..+..++++ |||++|.||+++|+++.+.+.++.
T Consensus 127 K~Dl~~~~-~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 127 KIDAEESK-KIVSE----KSAQELAKSLGDIPLFL---------------TSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp CTTSCGGG-CCSCH----HHHHHHHHHTTSCCEEE---------------EBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCcccccc-ccCCH----HHHHHHHHhcCCCeEEE---------------EecCCCCCHHHHHHHHHHHHHHhh
Confidence 99996432 45665 77888988555458888 999999999999999999988753
No 50
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=1.2e-17 Score=133.46 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=92.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|.+.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||||
T Consensus 59 ~~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~------------~~~~~iilv~n 119 (170)
T 1z0j_A 59 IWDTAGLERFR-------ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG------------PPSIVVAIAGN 119 (170)
T ss_dssp EEEECCSGGGG-------GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------------CTTSEEEEEEE
T ss_pred EEcCCCchhhh-------cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 68888776443 245678999999999999999999999999999998852 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. +++.++++..++ ++++ +||++|.|++++|+++.+.+
T Consensus 120 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 120 KCDLTDV--REVME----RDAKDYADSIHA-IFVE---------------TSAKNAININELFIEISRRI 167 (170)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CBTTTTBSHHHHHHHHHHHC
T ss_pred CCccccc--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCcCHHHHHHHHHHHH
Confidence 9999876 66666 788899999886 8999 99999999999999988765
No 51
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.73 E-value=7.8e-18 Score=142.99 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=93.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. ...+.||+++|++|||||++++.||+++ ..|+.++... ..++|+||||
T Consensus 80 i~Dt~G~~~~~-------~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~-------------~~~~piilv~ 139 (205)
T 1gwn_A 80 LWDTSGSPYYD-------NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-------------CPNTKMLLVG 139 (205)
T ss_dssp EEEECCSGGGT-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------CTTCEEEEEE
T ss_pred EEeCCCcHhhh-------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-------------CCCCCEEEEE
Confidence 68888876543 2345799999999999999999999999 7999999875 2348999999
Q ss_pred eCCCCCCC----------CCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeee-cCCCHHHHHHHHHH
Q 025248 81 NKADVAAK----------EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAK-EARYDKEAVMKFFR 149 (255)
Q Consensus 81 NK~DL~~~----------~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk-~g~nv~e~f~~l~~ 149 (255)
||+||... ..+.++. +++.+++++++...|+| |||| ++.||+++|+.+++
T Consensus 140 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e---------------~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 140 CKSDLRTDVSTLVELSNHRQTPVSY----DQGANMAKQIGAATYIE---------------CSALQSENSVRDIFHVATL 200 (205)
T ss_dssp ECGGGGGCHHHHHHHHTTTCCCCCH----HHHHHHHHHHTCSEEEE---------------CCTTTCHHHHHHHHHHHHH
T ss_pred echhhccchhhhhhhcccccCCCCH----HHHHHHHHHcCCCEEEE---------------eeeccCCcCHHHHHHHHHH
Confidence 99999742 1256776 88999999988558999 9999 68899999999998
Q ss_pred HHHH
Q 025248 150 MLIR 153 (255)
Q Consensus 150 ~li~ 153 (255)
.+++
T Consensus 201 ~~l~ 204 (205)
T 1gwn_A 201 ACVN 204 (205)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8875
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=137.71 Aligned_cols=113 Identities=19% Similarity=0.362 Sum_probs=94.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|.+.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||+|
T Consensus 78 i~Dt~G~~~~~-------~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~------------~~~~piilv~n 138 (193)
T 2oil_A 78 IWDTAGLERYR-------AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA------------EATIVVMLVGN 138 (193)
T ss_dssp EEEESCCCTTC-------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS------------CTTCEEEEEEE
T ss_pred EEeCCCchhhh-------hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCeEEEEEE
Confidence 67777765322 345679999999999999999999999999999998742 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.+.. +++.++++..++ .+++ |||++|.||+++|+++++.+.++.
T Consensus 139 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 139 KSDLSQA--REVPT----EEARMFAENNGL-LFLE---------------TSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCcccc--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876 56666 788999999987 8899 999999999999999999988754
No 53
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.72 E-value=9.4e-18 Score=142.40 Aligned_cols=115 Identities=13% Similarity=0.229 Sum_probs=85.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+. ...+.||+++|++|+|||++++.+|+.+. .|+.++... ...+|+||||
T Consensus 86 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~~piilv~ 145 (214)
T 2j1l_A 86 IWDTAGQDDYD-------RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF-------------CKKVPIIVVG 145 (214)
T ss_dssp EEEC----------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------CSSCCEEEEE
T ss_pred EEECCCchhhh-------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 68888776443 24557999999999999999999999997 899999875 2348999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.++. +++.++++..++..+++ |||++|.||+++|+++++.
T Consensus 146 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 146 CKTDLRKDKSLVNKLRRNGLEPVTY----HRGQEMARSVGAVAYLE---------------CSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp ECGGGGSCHHHHHHHHHTTCCCCCH----HHHHHHHHHTTCSEEEE---------------CBTTTTBSHHHHHHHHHHH
T ss_pred EChhhhccchhhhhhcccccCcccH----HHHHHHHHhcCCCEEEE---------------ecCCCCCCHHHHHHHHHHH
Confidence 999998651 125665 78899999999768899 9999999999999999999
Q ss_pred HHHHh
Q 025248 151 LIRRR 155 (255)
Q Consensus 151 li~~~ 155 (255)
+++.+
T Consensus 207 ~~~~~ 211 (214)
T 2j1l_A 207 ALSSR 211 (214)
T ss_dssp HHHC-
T ss_pred HHHhh
Confidence 88643
No 54
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.72 E-value=9.9e-18 Score=138.94 Aligned_cols=114 Identities=17% Similarity=0.262 Sum_probs=96.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||+++..+|+.+..|+.++.... ....+|++||||
T Consensus 66 l~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 127 (206)
T 2bov_A 66 ILDTAGQEDYA-------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-----------EDENVPFLLVGN 127 (206)
T ss_dssp EEECCCTTCCH-------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT-----------TCSCCCEEEEEE
T ss_pred EEcCCChhhhH-------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEe
Confidence 57777655332 245679999999999999999999999999999998852 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.++. +++.++++..++ ++++ +||++|.||+++|+++++.+.++.
T Consensus 128 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 128 KSDLEDK--RQVSV----EEAKNRAEQWNV-NYVE---------------TSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCcccc--ccccH----HHHHHHHHHhCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHcc
Confidence 9999876 66776 888999999997 8999 999999999999999999998764
No 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=5.7e-18 Score=140.95 Aligned_cols=113 Identities=19% Similarity=0.323 Sum_probs=93.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||||
T Consensus 79 l~Dt~G~~~~~-------~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~------------~~~~piilV~N 139 (192)
T 2il1_A 79 IWDTAGQERFN-------SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA------------SEDAELLLVGN 139 (192)
T ss_dssp EEEECCSGGGH-------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEeCCCcHHHH-------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 57777765433 235679999999999999999999999999999988752 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... +.++. +++.+++++.+...+++ |||++|.||+++|+++++.+.++
T Consensus 140 K~Dl~~~--~~v~~----~~~~~~~~~~~~~~~~~---------------~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 140 KLDCETD--REITR----QQGEKFAQQITGMRFCE---------------ASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHTSTTCEEEE---------------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred Ccccccc--cccCH----HHHHHHHHhcCCCeEEE---------------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999876 66776 77888998753348888 99999999999999999988764
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=6.3e-18 Score=140.41 Aligned_cols=111 Identities=21% Similarity=0.321 Sum_probs=92.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||+|
T Consensus 76 i~Dt~G~~~~~-------~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piiiv~N 136 (192)
T 2fg5_A 76 IWDTAGQERFH-------SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG------------PENIVMAIAGN 136 (192)
T ss_dssp EEEECCSGGGG-------GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEcCCCchhhH-------hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC------------CCCCcEEEEEE
Confidence 68887766443 245679999999999999999999999999999998852 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||... +.+.. +++.+++++.++ ++++ |||++|.|++++|+++.+.+.+
T Consensus 137 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 137 KCDLSDI--REVPL----KDAKEYAESIGA-IVVE---------------TSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHTTTC-EEEE---------------CBTTTTBSHHHHHHHHHHTCC-
T ss_pred Ccccccc--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCcCHHHHHHHHHHHHHh
Confidence 9999865 56666 889999999886 8889 9999999999999998876644
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.72 E-value=5.9e-18 Score=134.96 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=91.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ...++|++||+|
T Consensus 55 l~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 116 (167)
T 1c1y_A 55 ILDTAGTEQFT-------AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-----------DTEDVPMILVGN 116 (167)
T ss_dssp EEEECSSCSST-------THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-----------CCSCCCEEEEEE
T ss_pred EEECCChHHHH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-----------CcCCCcEEEEEE
Confidence 57777755332 345679999999999999999999999999999988742 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.++. +++.++++..+..++++ +||++|.|++++|+++.+.+
T Consensus 117 K~Dl~~~--~~~~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 117 KCDLEDE--RVVGK----EQGQNLARQWCNCAFLE---------------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTSCEEEE---------------CBTTTTBSHHHHHHHHHHHH
T ss_pred Ccccccc--ccCCH----HHHHHHHHHccCCcEEE---------------ecCCCCCCHHHHHHHHHHHH
Confidence 9999876 66766 78889999884348889 99999999999999998876
No 58
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=7.9e-18 Score=134.28 Aligned_cols=111 Identities=15% Similarity=0.283 Sum_probs=91.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||+|
T Consensus 56 ~~D~~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~piilv~n 116 (170)
T 1ek0_A 56 IWDTAGQERFA-------SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA------------SKDIIIALVGN 116 (170)
T ss_dssp EEEECCSGGGG-------GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEECCCChhhh-------hhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 67877766443 235679999999999999999999999999999998852 23589999999
Q ss_pred CCCCCCCCC-CccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEG-TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~-r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+..... +.+.. +++.++++..++ .+++ +||++|.|++++|+++.+.+
T Consensus 117 K~Dl~~~~~~~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 117 KIDXLQEGGERKVAR----EEGEKLAEEKGL-LFFE---------------TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CGGGGGSSCCCCSCH----HHHHHHHHHHTC-EEEE---------------CCTTTCTTHHHHHHHHHTTS
T ss_pred CCCccccccccCCCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHH
Confidence 999975421 44555 778899999987 8899 99999999999999887654
No 59
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.71 E-value=1.1e-17 Score=138.00 Aligned_cols=113 Identities=21% Similarity=0.330 Sum_probs=91.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+.. ...+.|++++|++|+|||++++.||+.+..|+.++.... ...++|++||+|
T Consensus 73 l~Dt~G~~~~~~------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-----------~~~~~piilv~n 135 (189)
T 1z06_A 73 LWDTAGQERFRK------SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL-----------LANDIPRILVGN 135 (189)
T ss_dssp EEECCCSHHHHT------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC-----------CCSCCCEEEEEE
T ss_pred EEECCCchhhhh------hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-----------CCCCCCEEEEEE
Confidence 677777664431 245679999999999999999999999999999998853 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecC---CCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEA---RYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g---~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.++. +++.++++..++ .+++ +||+++ .||+++|+++++.+.+
T Consensus 136 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 136 KCDLRSA--IQVPT----DLAQKFADTHSM-PLFE---------------TSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTC-CEEE---------------CCSSSGGGGSCHHHHHHHHC-----
T ss_pred Ccccccc--ceeCH----HHHHHHHHHcCC-EEEE---------------EeCCcCCcccCHHHHHHHHHHHHhh
Confidence 9999876 66776 888999999997 8999 999999 9999999999887643
No 60
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.7e-17 Score=134.88 Aligned_cols=113 Identities=22% Similarity=0.302 Sum_probs=93.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ....+|++||+|
T Consensus 68 i~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~p~ilv~n 129 (195)
T 1x3s_A 68 IWDTAGQERFR-------TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC-----------TRNDIVNMLVGN 129 (195)
T ss_dssp EEEECSSGGGC-------CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC-----------SCSCCEEEEEEE
T ss_pred EEeCCCchhhh-------hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-----------CcCCCcEEEEEE
Confidence 68877766433 245679999999999999999999999999999987632 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+.. +.+.. +++.+++++.++ .+++ +||+++.||+++|+++.+.+.+..
T Consensus 130 K~Dl~~---~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 130 KIDKEN---REVDR----NEGLKFARKHSM-LFIE---------------ASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CTTSSS---CCSCH----HHHHHHHHHTTC-EEEE---------------CCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred CCcCcc---cccCH----HHHHHHHHHcCC-EEEE---------------ecCCCCCCHHHHHHHHHHHHHhhh
Confidence 999953 45555 788899999986 8889 999999999999999999887643
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=140.66 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=90.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||||
T Consensus 81 i~Dt~G~~~~~-------~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~N 141 (199)
T 2p5s_A 81 LWDTAGQERFR-------SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA------------HETVPIMLVGN 141 (199)
T ss_dssp EEECTTCTTCH-------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---------------CCEEEEEE
T ss_pred EEECCCCcchh-------hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 67777655332 235678999999999999999999999999999988752 23489999999
Q ss_pred CCCCCCC----CCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAK----EGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~----~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||... ..+.+.. +++.++++..++ ++++ |||++|.||+++|+++++.+.+
T Consensus 142 K~Dl~~~~~~~~~~~v~~----~~~~~~~~~~~~-~~~~---------------~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 142 KADIRDTAATEGQKCVPG----HFGEKLAMTYGA-LFCE---------------TSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CGGGHHHHHHTTCCCCCH----HHHHHHHHHHTC-EEEE---------------CCTTTCTTHHHHHHHHHHHHTC
T ss_pred CcccccccccccccccCH----HHHHHHHHHcCC-eEEE---------------eeCCCCCCHHHHHHHHHHHHHh
Confidence 9999631 1156666 788899999997 8999 9999999999999999987743
No 62
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=1e-17 Score=141.11 Aligned_cols=114 Identities=20% Similarity=0.391 Sum_probs=95.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|||||++++.+|+.+..|+.++.... ....+|++||+|
T Consensus 88 l~Dt~G~~~~~-------~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~-----------~~~~~piilV~N 149 (217)
T 2f7s_A 88 LWDTAGQERFR-------SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA-----------YCENPDIVLIGN 149 (217)
T ss_dssp EEEEESHHHHH-------HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC-----------TTTCCEEEEEEE
T ss_pred EEECCCcHhHH-------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-----------CcCCCCEEEEEE
Confidence 68888876543 235679999999999999999999999999998876531 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... +.+.. +++.++++..++ ++++ |||+++.||+++|+++++.+.++.
T Consensus 150 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 150 KADLPDQ--REVNE----RQARELADKYGI-PYFE---------------TSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTC-CEEE---------------EBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred CCccccc--cccCH----HHHHHHHHHCCC-cEEE---------------EECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999876 66776 889999999997 8999 999999999999999999998754
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.71 E-value=1e-17 Score=132.93 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=91.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++..... ..++|++||+|
T Consensus 55 l~D~~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~n 116 (167)
T 1kao_A 55 ILDTAGTEQFA-------SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-----------YEKVPVILVGN 116 (167)
T ss_dssp EEECCCTTCCH-------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-----------TSCCCEEEEEE
T ss_pred EEECCCchhhH-------HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEE
Confidence 56666654322 2345689999999999999999999999999999987521 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.+.. +++.+++++.++ ++++ +||++|.|++++|+++.+.+.+
T Consensus 117 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 117 KVDLESE--REVSS----SEGRALAEEWGC-PFME---------------TSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHHTS-CEEE---------------ECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccccc--ccCCH----HHHHHHHHHhCC-CEEE---------------ecCCCCcCHHHHHHHHHHHHhh
Confidence 9999866 66766 788899999987 8999 9999999999999988887643
No 64
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=3.8e-17 Score=132.71 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=93.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+. .|+..+.... .++|++|||
T Consensus 57 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~ 116 (186)
T 1mh1_A 57 LWDTAGQEDYD-------RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-------------PNTPIILVG 116 (186)
T ss_dssp EECCCCSGGGT-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------TTSCEEEEE
T ss_pred EEECCCCHhHH-------HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-------------CCCCEEEEe
Confidence 68888876543 34567999999999999999999999998 8999998751 248999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+|+.... .+.++. +++.++++..++.++++ |||++|.|++++|+.+++.
T Consensus 117 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 117 TKLDLRDDKDTIEKLKEKKLTPITY----PQGLAMAKEIGAVKYLE---------------CSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp ECHHHHTCHHHHHHHHHTTCCCCCH----HHHHHHHHHTTCSEEEE---------------CCTTTCTTHHHHHHHHHHH
T ss_pred EcccccccchhhhhhcccccccCCH----HHHHHHHHhcCCcEEEE---------------ecCCCccCHHHHHHHHHHH
Confidence 999997541 145665 78889999998768889 9999999999999999887
Q ss_pred HHH
Q 025248 151 LIR 153 (255)
Q Consensus 151 li~ 153 (255)
+.+
T Consensus 178 ~~~ 180 (186)
T 1mh1_A 178 VLC 180 (186)
T ss_dssp HSC
T ss_pred Hhc
Confidence 753
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.71 E-value=4.6e-17 Score=132.59 Aligned_cols=113 Identities=17% Similarity=0.291 Sum_probs=92.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ...++|++||+|
T Consensus 56 i~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~i~v~n 117 (189)
T 4dsu_A 56 ILDTAGQEEYS-------AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK-----------DSEDVPMVLVGN 117 (189)
T ss_dssp EEECCCC---C-------TTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT-----------TCSCCCEEEEEE
T ss_pred EEECCCcHHHH-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEEE
Confidence 57777765433 245679999999999999999999999999999998852 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+.. +.+.. +++.++++..++ ++++ +||++|.|++++|+++++.+.+..
T Consensus 118 K~Dl~~---~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 118 KCDLPS---RTVDT----KQAQDLARSYGI-PFIE---------------TSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp CTTSSS---CSSCH----HHHHHHHHHHTC-CEEE---------------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CccCcc---cccCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHhh
Confidence 999974 34555 788999999996 8999 999999999999999999988654
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=8.4e-17 Score=134.25 Aligned_cols=112 Identities=20% Similarity=0.379 Sum_probs=94.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...+|++||+|
T Consensus 73 l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 133 (213)
T 3cph_A 73 LWDTAGQERFR-------TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA------------NDEAQLLLVGN 133 (213)
T ss_dssp EECCTTGGGGT-------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT------------TTCSEEEEEEE
T ss_pred EEeCCCcHHHH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 68888876443 235679999999999999999999999999999998852 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+. . +.+.. +++.++++.+++ ++++ |||++|.||+++|+++.+.+.++.
T Consensus 134 K~Dl~-~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 134 KSDME-T--RVVTA----DQGEALAKELGI-PFIE---------------SSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp CTTCS-S--CCSCH----HHHHHHHHHHTC-CEEE---------------CBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred CCCCc-c--cccCH----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99993 3 45665 778899999997 8999 999999999999999999888765
No 67
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=1.3e-17 Score=140.54 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=91.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+. .|+..+... ..++|++|||
T Consensus 82 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~~piilv~ 141 (204)
T 4gzl_A 82 LWDTAGLEDYD-------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-------------CPNTPIILVG 141 (204)
T ss_dssp EEEECCSGGGT-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------CSSCCEEEEE
T ss_pred EEECCCchhhH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 68888876443 24567999999999999999999999997 899999885 2348999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.++. +++.++++..++.++++ |||++|.||+++|+++++.
T Consensus 142 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 142 TKLDLRDDKDTIEKLKEKKLTPITY----PQGLAMAKEIGAVKYLE---------------CSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp ECHHHHTCHHHHHHHHHTTCCCCCH----HHHHHHHHHTTCSEEEE---------------CCTTTCTTHHHHHHHHHHT
T ss_pred echhhccchhhhhhhhccccccccH----HHHHHHHHhcCCcEEEE---------------eeCCCCCCHHHHHHHHHHH
Confidence 999997651 023555 78899999999867999 9999999999999998875
Q ss_pred H
Q 025248 151 L 151 (255)
Q Consensus 151 l 151 (255)
+
T Consensus 203 ~ 203 (204)
T 4gzl_A 203 V 203 (204)
T ss_dssp T
T ss_pred h
Confidence 4
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.70 E-value=1.3e-17 Score=134.44 Aligned_cols=110 Identities=18% Similarity=0.280 Sum_probs=91.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||+|
T Consensus 67 ~~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~piilv~n 127 (179)
T 2y8e_A 67 LWDTAGQERFR-------SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER------------GSDVIIMLVGN 127 (179)
T ss_dssp EEEECCSGGGG-------GGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH------------TTSSEEEEEEE
T ss_pred EEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEE
Confidence 67777765433 245678999999999999999999999999999998752 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+|+... +.+.. +++.++++..++ ++++ +||++|.|++++|+++.+.+.
T Consensus 128 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 128 KTDLSDK--RQVST----EEGERKAKELNV-MFIE---------------TSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------EBTTTTBSHHHHHHHHHHTCC
T ss_pred CCccccc--CcCCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHh
Confidence 9999876 66766 788889999886 8899 999999999999998887653
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.70 E-value=5.4e-17 Score=132.47 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=92.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++..+. .+|++||+|
T Consensus 97 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--------------~~piilv~N 155 (208)
T 3clv_A 97 IWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--------------NYIIILVAN 155 (208)
T ss_dssp EEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--------------CCEEEEEEE
T ss_pred EEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--------------CCcEEEEEE
Confidence 68888766433 245679999999999999999999999999999998852 289999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+| ... +.+.. +++.+++++.++ ++++ +||++|.|++++|+++.+.+.++.
T Consensus 156 K~D-~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 156 KID-KNK--FQVDI----LEVQKYAQDNNL-LFIQ---------------TSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CTT-CC---CCSCH----HHHHHHHHHTTC-EEEE---------------ECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCC-ccc--ccCCH----HHHHHHHHHcCC-cEEE---------------EecCCCCCHHHHHHHHHHHHHHhc
Confidence 999 433 56666 889999999987 8899 999999999999999999887753
No 70
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=4.9e-17 Score=131.41 Aligned_cols=115 Identities=20% Similarity=0.375 Sum_probs=92.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||+++..+|+.+..|+.++...... .....+|++||||
T Consensus 60 i~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~p~i~v~n 124 (177)
T 1wms_A 60 IWDTAGQERFR-------SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV--------KEPESFPFVILGN 124 (177)
T ss_dssp EEECCCCGGGH-------HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC--------SCTTTSCEEEEEE
T ss_pred EEeCCCchhhh-------hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc--------cccCCCcEEEEEE
Confidence 67777765433 23557999999999999999999999999999999875311 1124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+. . +.+.. +++.++++..+..++++ +||++|.|++++|+++++.+++
T Consensus 125 K~Dl~-~--~~~~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 125 KIDIS-E--RQVST----EEAQAWCRDNGDYPYFE---------------TSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp CTTCS-S--CSSCH----HHHHHHHHHTTCCCEEE---------------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCccc-c--cccCH----HHHHHHHHhcCCceEEE---------------EeCCCCCCHHHHHHHHHHHHHh
Confidence 99997 3 55665 78888998555458888 9999999999999999998865
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.70 E-value=5e-17 Score=136.12 Aligned_cols=112 Identities=17% Similarity=0.266 Sum_probs=91.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+ ..|+..+... ..++|++|||
T Consensus 77 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~~piilv~ 136 (201)
T 2gco_A 77 LWDTAGQEDYD-------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------CPNVPIILVG 136 (201)
T ss_dssp EECCCCSGGGT-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------STTCCEEEEE
T ss_pred EEECCCchhHH-------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 68887766443 2355699999999999999999999999 6899988875 2248999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.+.. +++.++++..++..+++ |||++|.||+++|+++.+.
T Consensus 137 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 137 NKKDLRQDEHTRRELAKMKQEPVRS----EEGRDMANRISAFGYLE---------------CSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp ECGGGTTCHHHHHHHHTTTCCCCCH----HHHHHHHHHTTCSEEEE---------------CCTTTCTTHHHHHHHHHHH
T ss_pred ecHHhhcCccchhhhcccccCcCCH----HHHHHHHHhCCCcEEEE---------------eeCCCCCCHHHHHHHHHHH
Confidence 999997641 134555 78899999998767889 9999999999999999987
Q ss_pred HH
Q 025248 151 LI 152 (255)
Q Consensus 151 li 152 (255)
++
T Consensus 198 ~l 199 (201)
T 2gco_A 198 GL 199 (201)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 72
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.70 E-value=2.6e-18 Score=143.46 Aligned_cols=110 Identities=22% Similarity=0.380 Sum_probs=80.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|+|||+|
T Consensus 86 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~p~ilv~n 146 (199)
T 3l0i_B 86 IWDTAGQERFR-------TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA------------SENVNKLLVGN 146 (199)
T ss_dssp EECCTTCTTCC-------CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-------------CCSEEEEC-C
T ss_pred EEECCCcHhHH-------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------cCCCCEEEEEE
Confidence 57777755332 235679999999999999999999999999999997642 23589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+||... +.+.. +++.++++..++ ++++ +||++|.||+++|+++++.+.
T Consensus 147 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 147 KCDLTTK--KVVDY----TTAKEFADSLGI-PFLE---------------TSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CSSCC----CCCCS----CC-CHHHHTTTC-CBCC---------------CCC---HHHHHHHHHHTTTTT
T ss_pred CccCCcc--ccCCH----HHHHHHHHHcCC-eEEE---------------EECCCCCCHHHHHHHHHHHHH
Confidence 9999876 66766 667889998886 7888 999999888888888876654
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.9e-17 Score=137.41 Aligned_cols=116 Identities=17% Similarity=0.285 Sum_probs=93.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+ ..|+..+... ..++|++|||
T Consensus 77 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~~piilv~ 136 (207)
T 2fv8_A 77 LWDTAGQEDYD-------RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-------------CPNVPIILVA 136 (207)
T ss_dssp EEECTTCTTCT-------TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------STTCCEEEEE
T ss_pred EEECCCcHHHH-------HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------CCCCCEEEEE
Confidence 57777765433 3456799999999999999999999999 6899998875 2348999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.++. +++.++++..++..+++ |||++|.||+++|+++.+.
T Consensus 137 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 137 NKKDLRSDEHVRTELARMKQEPVRT----DDGRAMAVRIQAYDYLE---------------CSAKTKEGVREVFETATRA 197 (207)
T ss_dssp ECGGGGGCHHHHHHHHHTTCCCCCH----HHHHHHHHHTTCSEEEE---------------CCTTTCTTHHHHHHHHHHH
T ss_pred EchhhhccccchhhhhhcccCCCCH----HHHHHHHHhcCCCEEEE---------------eeCCCCCCHHHHHHHHHHH
Confidence 999997541 034555 77889999998767889 9999999999999999998
Q ss_pred HHHHhc
Q 025248 151 LIRRRY 156 (255)
Q Consensus 151 li~~~~ 156 (255)
+++..+
T Consensus 198 i~~~~~ 203 (207)
T 2fv8_A 198 ALQKRY 203 (207)
T ss_dssp HHSCCC
T ss_pred HHHHhh
Confidence 876543
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=1.8e-17 Score=139.62 Aligned_cols=112 Identities=25% Similarity=0.357 Sum_probs=91.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ..++|++||||
T Consensus 65 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~piilv~n 125 (218)
T 4djt_A 65 VWDTAGQEKKA-------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV------------GNEAPIVVCAN 125 (218)
T ss_dssp EEEECSGGGTS-------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH------------CSSSCEEEEEE
T ss_pred EEecCCchhhc-------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEE
Confidence 67777766433 245578999999999999999999999999999998752 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... +.+.. +.+.++++..++ ++++ |||++|.|++++|+++++.+.+.
T Consensus 126 K~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 126 KIDIKNR--QKISK----KLVMEVLKGKNY-EYFE---------------ISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp CTTCC------CCH----HHHHHHTTTCCC-EEEE---------------EBTTTTBTTTHHHHHHHHHHHCC
T ss_pred CCCCccc--cccCH----HHHHHHHHHcCC-cEEE---------------EecCCCCCHHHHHHHHHHHHhcc
Confidence 9999876 56776 778888888886 8899 99999999999999999988664
No 75
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.69 E-value=1.4e-16 Score=132.43 Aligned_cols=117 Identities=22% Similarity=0.361 Sum_probs=93.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. .....|++++|++|+|||++++.+|+.+..|+.++...... .....+|++||||
T Consensus 61 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~piilv~n 125 (207)
T 1vg8_A 61 IWDTAGQERFQ-------SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP--------RDPENFPFVVLGN 125 (207)
T ss_dssp EEEECSSGGGS-------CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC--------SSGGGSCEEEEEE
T ss_pred EEeCCCcHHHH-------HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccc--------ccCCCCcEEEEEE
Confidence 68888866443 23567999999999999999999999999999998874211 0123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+.. +.+.. +++.++++.....++++ +||++|.|++++|+++++.+.++.
T Consensus 126 K~Dl~~---~~~~~----~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 126 KIDLEN---RQVAT----KRAQAWCYSKNNIPYFE---------------TSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp CTTSSC---CCSCH----HHHHHHHHHTTSCCEEE---------------CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCcc---cccCH----HHHHHHHHhcCCceEEE---------------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999973 45555 77888888444348888 999999999999999999998754
No 76
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.68 E-value=1.7e-16 Score=130.38 Aligned_cols=113 Identities=18% Similarity=0.286 Sum_probs=87.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||+++..+|+.+..|+.++.... ....+|++||+|
T Consensus 73 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------~~~~~p~ilv~n 134 (190)
T 3con_A 73 ILDTAGQEEYS-------AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-----------DSDDVPMVLVGN 134 (190)
T ss_dssp EEECCC------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-----------TCSCCCEEEEEE
T ss_pred EEECCChHHHH-------HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-----------CCCCCeEEEEEE
Confidence 57777765432 234579999999999999999999999999999988742 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+|+... .+.. +++.+++++.++ ++++ |||++|.|++++|+++.+.+.+.+
T Consensus 135 K~Dl~~~---~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 135 KCDLPTR---TVDT----KQAHELAKSYGI-PFIE---------------TSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp CTTCSCC---CSCH----HHHHHHHHHHTC-CEEE---------------CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCcCCcc---cCCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999753 4454 788999999997 8999 999999999999999999987754
No 77
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=2.2e-17 Score=137.75 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=83.9
Q ss_pred CcccccccccccCCCCCCCcc---cccccCCcEEEEEEECCCh--hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE
Q 025248 2 FWKERERENKELNGGPPTGQV---RVLVVGDSGVIFVHDLSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 76 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~---r~Yyr~adgvIlVyDvT~~--~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi 76 (255)
+||.+|++.+. ... +.||+++|++|+|||++++ ++++.+..|+.++... ..++|+
T Consensus 73 i~Dt~G~~~~~-------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-------------~~~~pi 132 (196)
T 3llu_A 73 IWDFPGQMDFF-------DPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-------------NPDMNF 132 (196)
T ss_dssp EEECCSSCCTT-------CTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-------------CTTCEE
T ss_pred EEECCCCHHHH-------hhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-------------CCCCcE
Confidence 56666655332 223 5899999999999999998 7888888898888653 235999
Q ss_pred EEEEeCCCCCCCC-----CCccCCccHHHHHHHHHH----HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHH
Q 025248 77 VVIGNKADVAAKE-----GTRGSSGNLVDAARQWVE----KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKF 147 (255)
Q Consensus 77 iLVGNK~DL~~~~-----~r~Vs~~~l~e~a~~~a~----~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l 147 (255)
+|||||+||.... .+.+.. +++.++++ ..++ .|+| |||++ .||+++|+.+
T Consensus 133 ilv~nK~Dl~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~-~~~e---------------~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 133 EVFIHKVDGLSDDHKIETQRDIHQ----RANDDLADAGLEKLHL-SFYL---------------TSIYD-HSIFEAFSKV 191 (196)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHH----HHHHHHHHTTCTTSCE-EEEE---------------ECTTS-THHHHHHHHH
T ss_pred EEEEeccccCchhhhhHHHhHHHH----HHHHHHHHhhhhcCCc-ceEE---------------EEech-hhHHHHHHHH
Confidence 9999999986521 134444 56777887 5665 7888 99999 9999999999
Q ss_pred HHHH
Q 025248 148 FRML 151 (255)
Q Consensus 148 ~~~l 151 (255)
++.|
T Consensus 192 ~~~l 195 (196)
T 3llu_A 192 VQKL 195 (196)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9876
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=3.2e-17 Score=130.93 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=89.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.+.. .....+|++||+|
T Consensus 55 ~~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~----------~~~~~~pii~v~n 117 (172)
T 2erx_A 55 ITDTTGSHQFP-------AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK----------GDVESIPIMLVGN 117 (172)
T ss_dssp EEECCSCSSCH-------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH----------C---CCCEEEEEE
T ss_pred EEECCCchhhH-------HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh----------CCCCCCCEEEEEE
Confidence 57777655332 245578999999999999999999999999998887741 1123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... +.+.. +++.++++..++ ++++ +||++|.|++++|+++.+.+
T Consensus 118 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 118 KCDESPS--REVQS----SEAEALARTWKC-AFME---------------TSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CGGGGGG--CCSCH----HHHHHHHHHHTC-EEEE---------------CBTTTTBSHHHHHHHHHHTC
T ss_pred ccccccc--cccCH----HHHHHHHHHhCC-eEEE---------------ecCCCCcCHHHHHHHHHHHH
Confidence 9999876 56665 778889998886 8899 99999999999999888754
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.67 E-value=8.6e-17 Score=136.33 Aligned_cols=110 Identities=19% Similarity=0.288 Sum_probs=91.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. ...+.||+++|++|+|||++++.+|+.+..|+.++... ..++|+|||||
T Consensus 68 i~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-------------~~~~p~ilv~n 127 (221)
T 3gj0_A 68 VWDTAGQEKFG-------GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-------------CENIPIVLCGN 127 (221)
T ss_dssp EEEECSGGGTS-------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-------------STTCCEEEEEE
T ss_pred EEeCCChHHHh-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-------------CCCCCEEEEEE
Confidence 68888766433 24567999999999999999999999999999999985 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... + +. .++.++++..++ .+++ |||++|.||+++|+++.+.+.+..
T Consensus 128 K~Dl~~~--~-~~-----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 128 KVDIKDR--K-VK-----AKSIVFHRKKNL-QYYD---------------ISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp CTTSSSC--S-SC-----GGGCCHHHHHTC-EEEE---------------CBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred CCccccc--c-cc-----HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHHHhCc
Confidence 9999765 2 22 346678888886 8999 999999999999999999988754
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.67 E-value=1.4e-16 Score=125.84 Aligned_cols=111 Identities=20% Similarity=0.306 Sum_probs=89.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++..+|+.+..|+.++.... ...++|++||+|
T Consensus 55 ~~D~~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~-----------~~~~~p~iiv~n 116 (166)
T 2ce2_X 55 ILDTAGQEEYS-------AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-----------DSDDVPMVLVGN 116 (166)
T ss_dssp EEECCCCSSCC-------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-----------TCSCCCEEEEEE
T ss_pred EEECCCchhhh-------HHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------CCCCCcEEEEEE
Confidence 46666644222 234568999999999999999999999999999988742 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... .+.. +++.+++++.++ ++++ +||++|.|++++|+++.+.+.+
T Consensus 117 K~Dl~~~---~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 117 KSDLAAR---TVES----RQAQDLARSYGI-PYIE---------------TSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTCSCC---CSCH----HHHHHHHHHHTC-CEEE---------------ECTTTCTTHHHHHHHHHHHHHT
T ss_pred chhhhhc---ccCH----HHHHHHHHHcCC-eEEE---------------ecCCCCCCHHHHHHHHHHHHHh
Confidence 9999753 3444 778899999997 8999 9999999999999999988753
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.66 E-value=1.5e-16 Score=131.07 Aligned_cols=123 Identities=16% Similarity=0.150 Sum_probs=86.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. .....||+++|++|+|||+++++||+.+..|+.++....... ...++...+|+|||||
T Consensus 67 i~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~piilv~N 135 (199)
T 4bas_A 67 VFDMGGAKKFR-------GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIR----RELPGGGRVPFLFFAN 135 (199)
T ss_dssp EEEECCSGGGG-------GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHH----SBCTTSCBCCEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhh----hcccccCCCCEEEEEE
Confidence 68888877543 245679999999999999999999999999999987631000 0011123589999999
Q ss_pred CCCCCCCCCCccCCccHHHH--HHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDA--ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~--a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... .... .+.+. ...+++..++ .+++ |||++|.||+++|++|++.+.++.
T Consensus 136 K~Dl~~~--~~~~--~~~~~~~~~~~~~~~~~-~~~~---------------~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 136 KMDAAGA--KTAA--ELVEILDLTTLMGDHPF-VIFA---------------SNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CTTSTTC--CCHH--HHHHHHTHHHHHTTSCE-EEEE---------------CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CcCCCCC--CCHH--HHHHHhcchhhccCCee-EEEE---------------eeCCCccCHHHHHHHHHHHHHHHh
Confidence 9999865 2211 01111 1111133443 6777 999999999999999999988764
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.66 E-value=7.6e-17 Score=128.75 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=80.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++++||+.+..|+.++... ....++|++||||
T Consensus 48 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----------~~~~~~piilv~n 109 (164)
T 1r8s_A 48 VWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-----------DELRDAVLLVFAN 109 (164)
T ss_dssp EEECCCCGGGH-------HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-----------GGGTTCEEEEEEE
T ss_pred EEEcCCChhhH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc-----------hhhcCCeEEEEEE
Confidence 68888776433 23456899999999999999999999999999998762 1123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+.... . ..++.+..+. .++++ |||++|.|++++|+++.+.+.++
T Consensus 110 K~Dl~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 110 KQDLPNAM----N-------AAEITDKLGLHSLRHRNWYIQA---------------TCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp CTTSTTCC----C-------HHHHHHHTTGGGCSSCCEEEEE---------------CBTTTTBTHHHHHHHHHHHC---
T ss_pred CcCCcCCC----C-------HHHHHHHhCcccccCccEEEEE---------------cccCCCcCHHHHHHHHHHHHhhc
Confidence 99997541 1 2233333332 13566 99999999999999999877543
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.65 E-value=1.5e-16 Score=133.64 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=80.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.||+++|++|+|||+++++||+++..|+.++.+.. ...++|++||||
T Consensus 73 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 134 (198)
T 1f6b_A 73 TFDLGGHIQAR-------RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-----------TIANVPILILGN 134 (198)
T ss_dssp EEEECC----C-------CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-----------GGTTSCEEEEEE
T ss_pred EEECCCcHhhH-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-----------ccCCCcEEEEEE
Confidence 68888766433 245679999999999999999999999999999987631 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcC----------------CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQG----------------LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 145 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~g----------------l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~ 145 (255)
|+|+.. .++. +++.+++.... ...++| |||++|.||+++|+
T Consensus 135 K~Dl~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~SA~~g~gv~~l~~ 191 (198)
T 1f6b_A 135 KIDRPE----AISE----ERLREMFGLYGQTTGKGSVSLKELNARPLEVFM---------------CSVLKRQGYGEGFR 191 (198)
T ss_dssp CTTSTT----CCCH----HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE---------------CBTTTTBSHHHHHH
T ss_pred CCCccc----cCCH----HHHHHHhCcccccccccccccccccCceEEEEE---------------EECCCCCCHHHHHH
Confidence 999974 3444 56666655321 124566 99999999999999
Q ss_pred HHHHH
Q 025248 146 KFFRM 150 (255)
Q Consensus 146 ~l~~~ 150 (255)
++.+.
T Consensus 192 ~l~~~ 196 (198)
T 1f6b_A 192 WMAQY 196 (198)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 98754
No 84
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.65 E-value=3.4e-16 Score=139.27 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=94.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. .....|++++|++|+|||++++.||+.+. .|+.++.... .++|++|||
T Consensus 207 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ilv~ 266 (332)
T 2wkq_A 207 LWDTAGLEDYD-------RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-------------PNTPIILVG 266 (332)
T ss_dssp EEEECCCGGGT-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-------------TTSCEEEEE
T ss_pred EEeCCCchhhh-------HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-------------CCCcEEEEE
Confidence 68888876543 34567999999999999999999999998 8999998752 258999999
Q ss_pred eCCCCCCCC----------CCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKE----------GTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~----------~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+||.... .+.++. +++.+++++.++.++++ |||++|.||+++|+.+++.
T Consensus 267 nK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 267 TKLDLRDDKDTIEKLKEKKLTPITY----PQGLAMAKEIGAVKYLE---------------CSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp ECHHHHTCHHHHHHHHHTTCCCCCH----HHHHHHHHHTTCSEEEE---------------CCTTTCTTHHHHHHHHHHH
T ss_pred EchhcccccchhhhccccccccccH----HHHHHHHHHcCCcEEEE---------------ecCCCCcCHHHHHHHHHHH
Confidence 999997531 145666 88999999999768899 9999999999999999988
Q ss_pred HHH
Q 025248 151 LIR 153 (255)
Q Consensus 151 li~ 153 (255)
+++
T Consensus 328 ~~~ 330 (332)
T 2wkq_A 328 VLC 330 (332)
T ss_dssp HHC
T ss_pred Hhc
Confidence 764
No 85
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.64 E-value=1.3e-16 Score=131.67 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=79.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....||+++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 64 i~Dt~G~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 125 (181)
T 1fzq_A 64 VWDIGGQRKIR-------PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-----------KLSCVPVLIFAN 125 (181)
T ss_dssp EEECSSCGGGH-------HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG-----------GGTTCCEEEEEE
T ss_pred EEECCCCHHHH-------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-----------hhcCCCEEEEEE
Confidence 67777766432 234578999999999999999999999999998886521 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... +. ..++.+..++ ..++| |||++|.||+++|+++++.+.++
T Consensus 126 K~Dl~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 126 KQDLLTA--AP---------ASEIAEGLNLHTIRDRVWQIQS---------------CSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp CTTSTTC--CC---------HHHHHHHTTGGGCCSSCEEEEE---------------CCTTTCTTHHHHHHHHHHTC---
T ss_pred CcCcccC--CC---------HHHHHHHhCchhccCCceEEEE---------------ccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999765 22 1223333321 14566 99999999999999998877553
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.64 E-value=4.7e-16 Score=124.61 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=82.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ...++|++||+|
T Consensus 55 ~~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~n 116 (171)
T 1upt_A 55 VWDLGGLTSIR-------PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-----------ELRKAILVVFAN 116 (171)
T ss_dssp EEEECCCGGGG-------GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-----------GGTTCEEEEEEE
T ss_pred EEECCCChhhh-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-----------hhCCCEEEEEEE
Confidence 68888876443 245679999999999999999999999999998887631 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHH----HHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQW----VEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~----a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... .... +....+ ++..++ ++++ |||++|.|++++|+++++.+.+
T Consensus 117 K~Dl~~~--~~~~-----~~~~~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 117 KQDMEQA--MTSS-----EMANSLGLPALKDRKW-QIFK---------------TSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTSTTC--CCHH-----HHHHHHTGGGCTTSCE-EEEE---------------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCcCC--CCHH-----HHHHHhCchhccCCce-EEEE---------------CcCCCCcCHHHHHHHHHHHHhh
Confidence 9999765 2110 111111 222233 5667 9999999999999999988754
No 87
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.44 E-value=1.8e-17 Score=138.57 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=88.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
|||.+|++.+. ...+.|++++|++|+|||++++.+|+.+. .|+..+... ..++|++|||
T Consensus 82 i~Dt~G~~~~~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~-------------~~~~piilv~ 141 (204)
T 3th5_A 82 LWDTAGQEDYD-------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-------------CPNTPIILVG 141 (204)
Confidence 78888876443 34556899999999999999999999997 899888764 1258999999
Q ss_pred eCCCCCCCCC----------CccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 81 NKADVAAKEG----------TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~~----------r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
||+|+..... +.+.. +++.++++..++.++++ |||++|.||+++|+.+++.
T Consensus 142 NK~Dl~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~---------------vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 142 TKLDLRDDKDTIEKLKEKKLTPITY----PQGLAMAKEIGAVKYLE---------------CSALTQRGLKTVFDEAIRA 202 (204)
Confidence 9999976410 13444 66788888888657788 9999999999999988876
Q ss_pred H
Q 025248 151 L 151 (255)
Q Consensus 151 l 151 (255)
+
T Consensus 203 i 203 (204)
T 3th5_A 203 V 203 (204)
Confidence 5
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.63 E-value=3.7e-16 Score=130.22 Aligned_cols=108 Identities=13% Similarity=0.037 Sum_probs=80.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.||+++|++|+|||+++++||+.+..|+.++.... ...++|++||||
T Consensus 71 i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 132 (190)
T 1m2o_B 71 TFDLGGHIQAR-------RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-----------ELKDVPFVILGN 132 (190)
T ss_dssp EEECCCSGGGT-------TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-----------GGTTCCEEEEEE
T ss_pred EEECCCCHHHH-------HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-----------hhcCCCEEEEEE
Confidence 68888776443 235679999999999999999999999999999987631 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHc-----------CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQ-----------GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~-----------gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+|+... ++. +++.++++.. ....++| |||++|.||+++|+++.+.
T Consensus 133 K~Dl~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 133 KIDAPNA----VSE----AELRSALGLLNTTGSQRIEGQRPVEVFM---------------CSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CTTSTTC----CCH----HHHHHHTTCSSCCC---CCSSCCEEEEE---------------CBTTTTBSHHHHHHHHHTT
T ss_pred CCCCcCC----CCH----HHHHHHhCCccccccccccccceEEEEE---------------eECCcCCCHHHHHHHHHhh
Confidence 9999752 333 4454444321 1124666 9999999999999988753
No 89
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.63 E-value=1.2e-15 Score=125.60 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=82.6
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.|++++|++|+|||++++++|+.+..|+.++.... ...++|++||+|
T Consensus 70 ~~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~n 131 (189)
T 2x77_A 70 VWDLGGQTGVR-------PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-----------ELRKSLLLIFAN 131 (189)
T ss_dssp EEEECCSSSSC-------CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-----------TTTTCEEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-----------hcCCCeEEEEEE
Confidence 68888876443 235679999999999999999999999999999887631 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... .. ..++.+..+. .++++ |||++|.|++++|+++.+.+.++
T Consensus 132 K~Dl~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 132 KQDLPDA--AS---------EAEIAEQLGVSSIMNRTWTIVK---------------SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTSTTC--CC---------HHHHHHHTTGGGCCSSCEEEEE---------------CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred CCCCcCC--CC---------HHHHHHHhChhhccCCceEEEE---------------ccCCCccCHHHHHHHHHHHHHhc
Confidence 9999765 11 1222222221 14566 99999999999999999988664
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.63 E-value=5.5e-16 Score=126.98 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=83.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ...+.|++++|++|+|||++++.||+.+..|+.++..+. ...++|++||+|
T Consensus 66 ~~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~n 127 (186)
T 1ksh_A 66 IWDVGGQKSLR-------SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-----------RLAGATLLIFAN 127 (186)
T ss_dssp EEEECCSHHHH-------TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-----------GGTTCEEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-----------hcCCCcEEEEEe
Confidence 68888877554 245679999999999999999999999999999987631 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHH-----HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVE-----KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~-----~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... .. . ++..+... ..++ ++++ |||++|.|++++|+++.+.+.++.
T Consensus 128 K~Dl~~~--~~--~----~~~~~~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~~~~ 182 (186)
T 1ksh_A 128 KQDLPGA--LS--C----NAIQEALELDSIRSHHW-RIQG---------------CSAVTGEDLLPGIDWLLDDISSRV 182 (186)
T ss_dssp CTTSTTC--CC--H----HHHHHHTTGGGCCSSCE-EEEE---------------CCTTTCTTHHHHHHHHHHHHHTC-
T ss_pred CccCCCC--CC--H----HHHHHHhChhhccCCce-EEEE---------------eeCCCCCCHHHHHHHHHHHHHhcc
Confidence 9999765 22 1 22222111 1222 5666 999999999999999999887653
No 91
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=1.2e-15 Score=124.10 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=80.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|.+.+. .....|++++|++|+|||++++.+|+.+..|+.++.... ...++|++||+|
T Consensus 66 i~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~n 127 (183)
T 1moz_A 66 VWDLGGQTSIR-------PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-----------ELQDAALLVFAN 127 (183)
T ss_dssp EEEEC----CC-------TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-----------TTSSCEEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-----------hhCCCeEEEEEE
Confidence 68888776432 245679999999999999999999999999999887631 134589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+||... ... ++..+......+ .++++ |||++|.|++++|+++.+.+.++
T Consensus 128 K~Dl~~~----~~~----~~i~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 128 KQDQPGA----LSA----SEVSKELNLVELKDRSWSIVA---------------SSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp CTTSTTC----CCH----HHHHHHTTTTTCCSSCEEEEE---------------EBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCCC----CCH----HHHHHHhCcccccCCceEEEE---------------ccCCCCcCHHHHHHHHHHHHHhc
Confidence 9999754 111 222222211111 14566 99999999999999999988764
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.62 E-value=2.7e-16 Score=131.24 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=78.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 77 i~Dt~G~~~~~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-----------~~~~~piilv~N 138 (192)
T 2b6h_A 77 VWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED-----------ELRDAVLLVFAN 138 (192)
T ss_dssp EEECC-----C-------TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-----------GGTTCEEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc-----------ccCCCeEEEEEE
Confidence 68887776432 235579999999999999999999999999999987621 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+||... . . ..++++..+. .++++ |||++|.||+++|+++++.+.
T Consensus 139 K~Dl~~~--~--~-------~~~i~~~~~~~~~~~~~~~~~~---------------~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 139 KQDMPNA--M--P-------VSELTDKLGLQHLRSRTWYVQA---------------TCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CTTSTTC--C--C-------HHHHHHHTTGGGCSSCCEEEEE---------------CBTTTTBTHHHHHHHHHHHTT
T ss_pred CCCCCCC--C--C-------HHHHHHHhCcccccCCceEEEE---------------CcCCCcCCHHHHHHHHHHHHh
Confidence 9999754 1 1 2334444432 13566 999999999999999988764
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=3.4e-16 Score=128.98 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=89.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. ...+.|++++|++|+|||++++.+|+.+..|+..+..... ....+|++||||
T Consensus 60 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----------~~~~~piilv~n 122 (199)
T 2gf0_A 60 ITDTTGSHQFP-------AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKG----------SVEDIPVMLVGN 122 (199)
T ss_dssp EEECCGGGSCH-------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHS----------CGGGSCEEEEEE
T ss_pred EEeCCChHHhH-------HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhc----------CCCCCCEEEEEE
Confidence 68887766433 2456789999999999999999999999999888776310 013489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+.. +.+.. +++.++++.+++ .+++ +||++|.||+++|+++++.+.+
T Consensus 123 K~Dl~~---~~~~~----~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 123 KCDETQ---REVDT----REAQAVAQEWKC-AFME---------------TSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp CTTCSS---CSSCH----HHHHHHHHHHTC-EEEE---------------CBTTTTBSHHHHHHHHHHHCSS
T ss_pred CccCCc---cccCH----HHHHHHHHHhCC-eEEE---------------EecCCCCCHHHHHHHHHHHHhh
Confidence 999975 34555 778889999986 8899 9999999999999998876643
No 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=125.34 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=82.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++...... ...++|++||+|
T Consensus 71 l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---------~~~~~piilv~n 134 (190)
T 2h57_A 71 VFDMSGQGRYR-------NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI---------KHRRIPILFFAN 134 (190)
T ss_dssp EEEECCSTTTG-------GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTT---------TTSCCCEEEEEE
T ss_pred EEECCCCHHHH-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh---------ccCCCeEEEEEe
Confidence 68887766443 24567999999999999999999999999999999874211 014589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHH-----cCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEK-----QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~-----~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+||... +.. ++..++++. .++ .+++ |||++|.||+++|+++.+.+.
T Consensus 135 K~Dl~~~----~~~----~~~~~~~~~~~~~~~~~-~~~~---------------~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 135 KMDLRDA----VTS----VKVSQLLCLENIKDKPW-HICA---------------SDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CTTSTTC----CCH----HHHHHHHTGGGCCSSCE-EEEE---------------CBTTTTBTHHHHHHHHHHHC-
T ss_pred CcCcccC----CCH----HHHHHHhChhhccCCce-EEEE---------------ccCCCCcCHHHHHHHHHHHHH
Confidence 9999754 222 445444431 122 5667 999999999999999988763
No 95
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.61 E-value=4.1e-16 Score=129.03 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=80.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||++++++|+.+..|+.++.... ...++|++||||
T Consensus 71 l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 132 (188)
T 1zd9_A 71 LWDIGGQPRFR-------SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-----------QLQGIPVLVLGN 132 (188)
T ss_dssp EEEECCSHHHH-------TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-----------GGTTCCEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-----------ccCCCCEEEEEE
Confidence 68888876543 245678999999999999999999999999999987621 124589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC-------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL-------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||.... . ..++++..++ ..+++ |||++|.||+++|+++.+.+.+
T Consensus 133 K~Dl~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~---------------~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 133 KRDLPGAL----D-------EKELIEKMNLSAIQDREICCYS---------------ISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTSTTCC----C-------HHHHHHHTTGGGCCSSCEEEEE---------------CCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCccCC----C-------HHHHHHHhChhhhccCCeeEEE---------------EECCCCCCHHHHHHHHHHHHHh
Confidence 99997541 1 1233333332 14556 9999999999999998876644
No 96
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=8.8e-16 Score=126.37 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=79.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||+++++||+.+..|+.++..+. ....+|++||||
T Consensus 64 i~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 125 (187)
T 1zj6_A 64 MWDIGGQESLR-------SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-----------DLRKAGLLIFAN 125 (187)
T ss_dssp EEECCC----C-------GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-----------GGTTCEEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-----------hhCCCeEEEEEE
Confidence 68888776433 245679999999999999999999999999999988731 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHH-----cCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEK-----QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~-----~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||... +.. ++..+.... .++ .+++ |||++|.|++++|+++++.+.+
T Consensus 126 K~Dl~~~----~~~----~~i~~~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 126 KQDVKEC----MTV----AEISQFLKLTSIKDHQW-HIQA---------------CCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp CTTSTTC----CCH----HHHHHHHTGGGCCSSCE-EEEE---------------CBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCCCcCC----CCH----HHHHHHhChhhhcCCCc-EEEE---------------ccCCCCcCHHHHHHHHHHHHHH
Confidence 9999754 222 333333221 232 5667 9999999999999999887633
No 97
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.61 E-value=1e-15 Score=125.61 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=79.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. ...+.|++++|++|+|||++++.+|+.+..|+.++.... ....+|++||||
T Consensus 69 i~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilv~N 130 (181)
T 2h17_A 69 MWDIGGQESLR-------SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-----------DLRKAGLLIFAN 130 (181)
T ss_dssp EEEESSSGGGT-------CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-----------GGTTCEEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-----------hhCCCeEEEEEE
Confidence 68888876543 245679999999999999999999999999999887621 123489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHH-----HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVE-----KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~-----~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|+||... +.. ++..++.. ..++ .+++ |||++|.||+++|+++++.
T Consensus 131 K~Dl~~~----~~~----~~i~~~~~~~~~~~~~~-~~~~---------------~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 131 KQDVKEC----MTV----AEISQFLKLTSIKDHQW-HIQA---------------CCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CTTSTTC----CCH----HHHHHHTTGGGCCSSCE-EEEE---------------CBTTTTBTHHHHHHHHHTC
T ss_pred CCCcccC----CCH----HHHHHHhCcccccCCce-EEEE---------------ccCCCCcCHHHHHHHHHhh
Confidence 9999754 121 22322221 1122 4566 9999999999999988754
No 98
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.60 E-value=4.6e-17 Score=151.34 Aligned_cols=114 Identities=13% Similarity=0.030 Sum_probs=83.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh--hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~--~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|+|.+- .+.-+.+.||++|+|+|+|||++++ ++++.+..|+.++... ..++|++||
T Consensus 50 IWDTAGQErf~----~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~-------------~~~ipillv 112 (331)
T 3r7w_B 50 VMELPGQLNYF----EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-------------NPSINIEVL 112 (331)
T ss_dssp EEECCSCSSSC----CCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH-------------CTTCEEEEE
T ss_pred EEECCCchhcc----chhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc-------------CCCCcEEEE
Confidence 69988888652 0111356899999999999999998 3334444456655553 234999999
Q ss_pred EeCCCCCCCCC-----CccCCccHHHHHHHHHHH----cCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 80 GNKADVAAKEG-----TRGSSGNLVDAARQWVEK----QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 80 GNK~DL~~~~~-----r~Vs~~~l~e~a~~~a~~----~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
|||+||..+.. |.|+. ++++++|+. .++ .|+| ||||+ .||+++|..+++.
T Consensus 113 gNK~DL~~~~~R~~~~R~V~~----~~~~~la~~~~~~~~i-~f~e---------------TSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 113 IHKVDGLSEDFKVDAQRDIMQ----RTGEELLELGLDGVQV-SFYL---------------TSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp CCCCCSSCSHHHHHHHHHHHH----HHHHTTSSSSCSCCCE-EEEC---------------CCSSS-SHHHHHHHHHHTT
T ss_pred EECcccCchhhhhhHHHHhhH----HHHHHHHhhcccccCc-eEEE---------------eccCC-CcHHHHHHHHHHH
Confidence 99999986521 34555 677788875 455 7888 99998 5999999999987
Q ss_pred HHH
Q 025248 151 LIR 153 (255)
Q Consensus 151 li~ 153 (255)
++.
T Consensus 172 li~ 174 (331)
T 3r7w_B 172 LIP 174 (331)
T ss_dssp SST
T ss_pred HHh
Confidence 764
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.59 E-value=2.8e-16 Score=129.81 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=82.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~-~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||+.|++.+.. ..+.||++++++|+|||++++ .+|+.+..|+.++... ..++|+||||
T Consensus 60 i~Dt~G~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-------------~~~~piilv~ 119 (184)
T 2zej_A 60 VWDFAGREEFYS-------THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-------------ASSSPVILVG 119 (184)
T ss_dssp EEEECSHHHHHT-------TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-------------CTTCEEEEEE
T ss_pred EEecCCCHHHHH-------hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-------------CCCCcEEEEE
Confidence 688888765542 245789999999999999998 5899999999999874 1248999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCC---CeeecCCCCCCCCCCCCcceeeecCC-CHHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLL---PSSEELPLTESFPGGGGLIAAAKEAR-YDKEAVMKFFRMLI 152 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~---~~~Ee~p~~e~~~~~~~~~tSAk~g~-nv~e~f~~l~~~li 152 (255)
||+|+... +.++. ...+.+.++++++++. .|+| +||+++. +++++++.+++.+.
T Consensus 120 nK~Dl~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 120 THLDVSDE--KQRKA-CMSKITKELLNKRGFPAIRDYHF---------------VNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp ECGGGCCH--HHHHH-HHHHHHHHTTTCTTSCEEEEEEE---------------CCTTSCCHHHHHHHHHHHHHHH
T ss_pred ECCCcccc--hhhHH-HHHHHHHHHHHhcCCcchhheEE---------------EecccCchhHHHHHHHHHHHHh
Confidence 99999765 33320 0114456677667762 2788 9999996 66666666665554
No 100
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=132.72 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=72.1
Q ss_pred CCcEEEEEEECCCh--hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQR--RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 28 ~adgvIlVyDvT~~--~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
+||++|||||++++ .||+.+..|+.++.... ...++|+||||||+||... +.+ +++.++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~-----------~~~~~piilV~NK~Dl~~~--~~v------~~~~~~ 222 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL-----------AKTKKPIVVVLTKCDEGVE--RYI------RDAHTF 222 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHH-----------HHTTCCEEEEEECGGGBCH--HHH------HHHHHH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHh-----------ccCCCCEEEEEEccccccc--HHH------HHHHHH
Confidence 89999999999999 99999999999987631 0234899999999999754 332 467778
Q ss_pred HHHc-CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 106 VEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 106 a~~~-gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++.. ++ .++| |||++|.||+++|+++++.+
T Consensus 223 ~~~~~~~-~~~e---------------~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 223 ALSKKNL-QVVE---------------TSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp HHTSSSC-CEEE---------------CBTTTTBSHHHHHHHHHHHH
T ss_pred HHhcCCC-eEEE---------------EECCCCCCHHHHHHHHHHHh
Confidence 8764 54 8889 99999999999999998876
No 101
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.56 E-value=9.3e-16 Score=143.05 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=90.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGG 71 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~----------~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~ 71 (255)
+||.+|++.+.. ....||++++|+|||||+++ ..+|+++..|+.++.++. ..
T Consensus 197 iwDt~GQe~~r~-------~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~-----------~~ 258 (353)
T 1cip_A 197 MFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK-----------WF 258 (353)
T ss_dssp EEEECCSGGGGG-------GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG-----------GG
T ss_pred EEeCCCchhhhH-------HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc-----------cc
Confidence 688888875542 46679999999999999999 578999999999998731 12
Q ss_pred CCCcEEEEEeCCCCCCCCC-------------CccCCccHHHHHHHHHHH-----------cCCCCeeecCCCCCCCCCC
Q 025248 72 LPVPYVVIGNKADVAAKEG-------------TRGSSGNLVDAARQWVEK-----------QGLLPSSEELPLTESFPGG 127 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~~~-------------r~Vs~~~l~e~a~~~a~~-----------~gl~~~~Ee~p~~e~~~~~ 127 (255)
.++|+||||||+||..+.. ..++. +++.+|+.. .++ .+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~----~e~~~~~~~~f~~l~~~~~~~~~-~~~e----------- 322 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTY----EEAAAYIQCQFEDLNKRKDTKEI-YTHF----------- 322 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCH----HHHHHHHHHHHHTTCSCTTTCCE-EEEE-----------
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCH----HHHHHHHHHHHHHhhcccCCCce-EEEE-----------
Confidence 4599999999999963310 02444 778888873 232 5667
Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 128 GGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 128 ~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|||+++.||+++|.++.+.++++.
T Consensus 323 ----tSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 323 ----TCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred ----EECcCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998754
No 102
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.56 E-value=1.3e-15 Score=142.25 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=88.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGG 71 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT----------~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~ 71 (255)
+||.+|++.+. .....||++++|+|||||++ +.++|+++..|+.++.++. ..
T Consensus 187 iwDtaGQe~~r-------~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-----------~~ 248 (354)
T 2xtz_A 187 LFDVGGQRNER-------RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-----------CF 248 (354)
T ss_dssp EEEECCSTTGG-------GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-----------GG
T ss_pred EEECCCchhhh-------HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-----------cc
Confidence 57777776444 24567999999999999999 8999999999999998731 12
Q ss_pred CCCcEEEEEeCCCCCCCCCCccCC--------------c-cHHHHHHHHHHHc--------------C-CCCeeecCCCC
Q 025248 72 LPVPYVVIGNKADVAAKEGTRGSS--------------G-NLVDAARQWVEKQ--------------G-LLPSSEELPLT 121 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~~~r~Vs~--------------~-~l~e~a~~~a~~~--------------g-l~~~~Ee~p~~ 121 (255)
.++|+||||||+||..+....+.. + +-.+++.+|+.+. + ...++|
T Consensus 249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~e----- 323 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYR----- 323 (354)
T ss_dssp SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEE-----
T ss_pred CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEE-----
Confidence 459999999999996441111210 0 1136677775541 1 113467
Q ss_pred CCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 122 ESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 122 e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|||+++.||+++|.++.+.++++..
T Consensus 324 ----------TSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 324 ----------TTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------EEeecchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887543
No 103
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.55 E-value=2e-14 Score=119.99 Aligned_cols=113 Identities=21% Similarity=0.357 Sum_probs=93.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|+++++++|+|||+++..+|+++..|+.++.... ...+|+++|+|
T Consensus 58 i~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~i~~v~n 118 (199)
T 2f9l_A 58 IWDTAGQERYR-------RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA------------DSNIVIMLVGN 118 (199)
T ss_dssp EEECSSGGGTT-------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEE
T ss_pred EEECCCchhhh-------hhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCeEEEEEE
Confidence 46666655332 234568999999999999999999999999999887642 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|+||... +.+.. ++++.++.+.++ .+++ |||+++.+++++|+.+.+.+.+..
T Consensus 119 K~Dl~~~--~~~~~----~~a~~l~~~~~~-~~~d---------------~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 119 KSDLRHL--RAVPT----DEARAFAEKNNL-SFIE---------------TSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp CTTCGGG--CCSCH----HHHHHHHHHTTC-EEEE---------------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--cCcCH----HHHHHHHHHcCC-eEEE---------------EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999866 56665 778999999887 7889 999999999999999999988754
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.54 E-value=5.9e-15 Score=135.23 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=79.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. .....||+++|++|||||++++.+|+.+..|+.++.... ...++|+|||||
T Consensus 213 i~Dt~G~~~~~-------~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~-----------~~~~~piilV~N 274 (329)
T 3o47_A 213 VWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-----------ELRDAVLLVFAN 274 (329)
T ss_dssp EEECC-----C-------CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG-----------GGTTCEEEEEEE
T ss_pred EEECCCCHhHH-------HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhh-----------ccCCCeEEEEEE
Confidence 68888766443 245679999999999999999999999999988887631 123589999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC-------CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL-------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~-------~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||... .. ..++.+.++.. ++++ |||++|.||+++|+.|++.+.+
T Consensus 275 K~Dl~~~--~~---------~~~i~~~~~~~~~~~~~~~~~~---------------vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 275 KQDLPNA--MN---------AAEITDKLGLHSLRHRNWYIQA---------------TCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CTTSTTC--CC---------HHHHHHHHTCTTCCSSCEEEEE---------------CBTTTTBTHHHHHHHHHHHHTC
T ss_pred CccCCcc--cC---------HHHHHHHhchhhhhcCCCEEEE---------------EECCCCcCHHHHHHHHHHHHHh
Confidence 9999865 11 23344444431 3556 9999999999999999988754
No 105
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.52 E-value=5.7e-15 Score=140.33 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=88.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGG 71 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~----------~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~ 71 (255)
+||.+|++.+- ..+..||++++|+|||||+++ ..+|+++..|+.++.++. ..
T Consensus 221 iwDtaGQe~~r-------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-----------~~ 282 (402)
T 1azs_C 221 MFDVGGQRDER-------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-----------WL 282 (402)
T ss_dssp EEEECCSGGGG-------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-----------TC
T ss_pred ecccchhhhhh-------hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-----------cC
Confidence 68888887544 246789999999999999999 999999999999998742 13
Q ss_pred CCCcEEEEEeCCCCCCCCCCc---cCC---------------------cc--HHHHHHHHHH-----Hc-------CCCC
Q 025248 72 LPVPYVVIGNKADVAAKEGTR---GSS---------------------GN--LVDAARQWVE-----KQ-------GLLP 113 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~~~r~---Vs~---------------------~~--l~e~a~~~a~-----~~-------gl~~ 113 (255)
.++|+||||||+||..+ +. ++. +. -.+++..|+. .. ..+.
T Consensus 283 ~~~piiLvgNK~DL~~~--ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~ 360 (402)
T 1azs_C 283 RTISVILFLNKQDLLAE--KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCY 360 (402)
T ss_dssp SSCCEEEEEECHHHHHH--HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEE
T ss_pred CCCeEEEEEEChhhhhh--hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccE
Confidence 45999999999999654 22 210 11 2356666642 21 1124
Q ss_pred eeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 114 SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 114 ~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
+++ |||+++.||+++|..+.+.|++..
T Consensus 361 ~~~---------------TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 361 PHF---------------TCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EEE---------------CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEE---------------EEeecCcCHHHHHHHHHHHHHHHH
Confidence 567 999999999999999988887653
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.50 E-value=2.4e-14 Score=122.42 Aligned_cols=101 Identities=15% Similarity=0.018 Sum_probs=76.4
Q ss_pred cccccCCcEEEEEEECCChhhHHH--HHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~--l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
+.|++.+|++|+|||++++.+|+. ...|+.++... ...+|++|||||+||... +.+.. ...+
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-------------~~~~piilv~nK~Dl~~~--~~~~~-~~~~ 166 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-------------FSNKSIVIGFNKIDKCNM--DSLSI-DNKL 166 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-------------C-CCCEEEEEECGGGCC----CCCH-HHHH
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-------------hcCCcEEEEEeCcccCCc--hhhHH-HHHH
Confidence 456889999999999999999863 33677776552 124899999999999876 55543 1123
Q ss_pred HHHHHHHHcC--CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 101 AARQWVEKQG--LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 101 ~a~~~a~~~g--l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
.+.++++..+ + .+++ |||++|.||+++|+++++.+.+.+
T Consensus 167 ~~~~~~~~~~~~~-~~~~---------------~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 167 LIKQILDNVKNPI-KFSS---------------FSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp HHHHHHHHCCSCE-EEEE---------------CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCc-eEEE---------------EecccCCCHHHHHHHHHHHHHHHH
Confidence 5667777776 4 7888 999999999999999999987654
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.50 E-value=7.5e-15 Score=133.03 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=87.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHH---HHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEI---ATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei---~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
+||.+|++.+... -.-...+.||+++|++|+|||+++++||+++..|...+ ..+ ..++|++|
T Consensus 56 i~Dt~G~~~~~~~--~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-------------~~~~piil 120 (307)
T 3r7w_A 56 LWDCGGQDVFMEN--YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-------------SPDAKIFV 120 (307)
T ss_dssp EEEECCSHHHHHH--HHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-------------CTTCEEEE
T ss_pred EEECCCcHHHhhh--hhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-------------CCCCeEEE
Confidence 6888887754100 00134667999999999999999999999998775544 433 23499999
Q ss_pred EEeCCCCCCCCCCc----cCCccHHHHHHHHHHHcCC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTR----GSSGNLVDAARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 79 VGNK~DL~~~~~r~----Vs~~~l~e~a~~~a~~~gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
||||+|+.....+. +.. +++.++++.+|+ .++++ |||++ .++.++|..+++.++
T Consensus 121 v~NK~Dl~~~~~r~~~~~v~~----~~~~~~~~~~g~~~~~~~~---------------tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 121 LLHKMDLVQLDKREELFQIMM----KNLSETSSEFGFPNLIGFP---------------TSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EEECGGGSCHHHHHHHHHHHH----HHHHHHHHTTTCCSCEEEE---------------CCTTS-SHHHHHHHHHHHTTC
T ss_pred EEecccccchhhhhHHHHHHH----HHHHHHHHHcCCCCeEEEE---------------eeecC-ChHHHHHHHHHHHHc
Confidence 99999998721143 444 778899999984 58888 99999 899999998887653
No 108
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.50 E-value=3.3e-15 Score=138.39 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=88.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGG 71 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT----------~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~ 71 (255)
+||.+|++.+- ..+..||++++|+|||||++ +.++|++...|+.++.++. ..
T Consensus 171 iwDtgGQe~~R-------~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~-----------~~ 232 (327)
T 3ohm_A 171 MVDVGGQRSER-------RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP-----------WF 232 (327)
T ss_dssp EEEECCSHHHH-------TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG-----------GG
T ss_pred EEEcCCchhHH-------HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh-----------cc
Confidence 68888887544 25678999999999999665 7889999999999988631 23
Q ss_pred CCCcEEEEEeCCCCCCCC--------------CCccCCccHHHHHHHHHH----------HcCCCCeeecCCCCCCCCCC
Q 025248 72 LPVPYVVIGNKADVAAKE--------------GTRGSSGNLVDAARQWVE----------KQGLLPSSEELPLTESFPGG 127 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~~--------------~r~Vs~~~l~e~a~~~a~----------~~gl~~~~Ee~p~~e~~~~~ 127 (255)
.++|+||+|||+||..+. +..++. +++.+|+. ..++ .+++
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~----e~a~~fi~~~F~~~~~~~~~~i-~~~~----------- 296 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDA----QAAREFILKMFVDLNPDSDKII-YSHF----------- 296 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCH----HHHHHHHHHHHHSSCTTTTSCE-EEEE-----------
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCH----HHHHHHHHHHHHhhcccccCCc-EEEE-----------
Confidence 459999999999997541 113444 77777743 2333 4566
Q ss_pred CCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 128 GGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 128 ~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
|||+++.||+++|..+.+.|+++.
T Consensus 297 ----TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 297 ----TCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----EEeecCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998864
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.50 E-value=3.8e-14 Score=135.23 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=81.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+.. ..+.||+++|++|+|||++++++|+.+..|+.++.+.. ....+|+|||||
T Consensus 370 l~Dt~G~~~~~~-------~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~-----------~~~~~p~ilv~N 431 (497)
T 3lvq_E 370 VWDVGGQDKIRP-------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-----------EMRDAIILIFAN 431 (497)
T ss_dssp EEEECCCGGGSG-------GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG-----------GGTTCEEEEEEE
T ss_pred EEECCCcHHHHH-------HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhh-----------hcCCCcEEEEEE
Confidence 688888765442 35679999999999999999999999999999987631 124599999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC-------CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL-------PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~-------~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||... . . ..++.+..+.. .+++ |||++|.||+++|++|++.+-+
T Consensus 432 K~Dl~~~--~--~-------~~~~~~~~~~~~~~~~~~~~~~---------------~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 432 KQDLPDA--M--K-------PHEIQEKLGLTRIRDRNWYVQP---------------SCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp CCSSSSC--C--C-------HHHHHHHTTCTTCCSSCEEEEE---------------CBTTTTBTHHHHHHHHHHHCC-
T ss_pred CCCCCcC--C--C-------HHHHHHHhchhhhhcCCeEEEE---------------EECCCCCCHHHHHHHHHHHHHh
Confidence 9999754 1 1 22334444431 2556 9999999999999999886643
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.49 E-value=1.1e-14 Score=118.29 Aligned_cols=108 Identities=10% Similarity=-0.054 Sum_probs=79.3
Q ss_pred CcccccccccccCCCCCCCccccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV--GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr--~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|++.+... .......+.||+ +++++|+|||+++.+ .+..|+.++.+. .+|++||
T Consensus 54 i~Dt~G~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~---------------~~p~ilv 114 (165)
T 2wji_A 54 VVDLPGVYSLTAN-SIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLMEM---------------GANLLLA 114 (165)
T ss_dssp EEECCCCSCSSSS-SHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHHT---------------TCCEEEE
T ss_pred EEECCCcccCCCc-chhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHhc---------------CCCEEEE
Confidence 5777776643210 000022356886 899999999999854 455688887652 2899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|||+|+... +.++. ++.++++.+++ ++++ |||++|.||+++|+++++.+
T Consensus 115 ~nK~Dl~~~--~~~~~-----~~~~~~~~~~~-~~~~---------------~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 115 LNKMDLAKS--LGIEI-----DVDKLEKILGV-KVVP---------------LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EECHHHHHH--TTCCC-----CHHHHHHHHTS-CEEE---------------CBGGGTBSHHHHHHHHHHHT
T ss_pred EEchHhccc--cChhh-----HHHHHHHHhCC-CEEE---------------EEcCCCCCHHHHHHHHHHHh
Confidence 999999755 44542 36788888886 8999 99999999999999988764
No 111
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.49 E-value=1e-13 Score=115.60 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=83.4
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
+.+..||++++++|+|||+++..+|+++..|+.++.... ....|+++|+||+||... +.+..
T Consensus 93 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------~~~~~i~~v~nK~Dl~~~--~~~~~---- 154 (191)
T 1oix_A 93 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA------------DSNIVIMLVGNKSDLRHL--RAVPT---- 154 (191)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS------------CTTCEEEEEEECGGGGGG--CCSCH----
T ss_pred hhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------CCCCcEEEEEECcccccc--cccCH----
Confidence 345678999999999999999999999999999887642 234899999999999865 55665
Q ss_pred HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 100 DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 100 e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+++++++.+.++ .+++ |||+++.+++++|+.+.+.+
T Consensus 155 ~~a~~l~~~~~~-~~ld---------------~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 155 DEARAFAEKNGL-SFIE---------------TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHTTC-EEEE---------------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-EEEE---------------EeCCCCCCHHHHHHHHHHHh
Confidence 789999999887 8899 99999999999999988765
No 112
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.49 E-value=1e-14 Score=136.45 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=85.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ----------RRTKTSLQKWAVEIATSGTFSAPLASGGPGG 71 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~----------~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~ 71 (255)
+||.+|++.+. .....||++++++|||||+++ ..+|+++..|+..+.++. ..
T Consensus 205 i~Dt~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-----------~~ 266 (362)
T 1zcb_A 205 MVDVGGQRSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-----------VF 266 (362)
T ss_dssp EEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-----------GG
T ss_pred EEeccchhhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-----------hh
Confidence 58888876443 245679999999999999999 889999999999998731 12
Q ss_pred CCCcEEEEEeCCCCCCCC--------------CCccCCccHHHHHHHHHHH-----------cCCCCeeecCCCCCCCCC
Q 025248 72 LPVPYVVIGNKADVAAKE--------------GTRGSSGNLVDAARQWVEK-----------QGLLPSSEELPLTESFPG 126 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~~--------------~r~Vs~~~l~e~a~~~a~~-----------~gl~~~~Ee~p~~e~~~~ 126 (255)
.++|+||||||+||..+. +..++. +++.+|+.. .++ .+++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~----~e~~~~~~~~f~~l~~~~~~~~~-~~~~---------- 331 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCL----RDVQKFLVECFRGKRRDQQQRPL-YHHF---------- 331 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCH----HHHHHHHHHHHHTTCSSCC--CC-EEEE----------
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCH----HHHHHHHHHHHHHhhcccCCCce-EEEE----------
Confidence 459999999999996431 011444 677777632 222 4556
Q ss_pred CCCcceeeecCCCHHHHHHHHHHHHHHHhc
Q 025248 127 GGGLIAAAKEARYDKEAVMKFFRMLIRRRY 156 (255)
Q Consensus 127 ~~~~~tSAk~g~nv~e~f~~l~~~li~~~~ 156 (255)
|||+++.||+++|..+.+.++++..
T Consensus 332 -----tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 332 -----TTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----EecCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 113
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.49 E-value=5.8e-14 Score=127.16 Aligned_cols=91 Identities=18% Similarity=0.094 Sum_probs=74.3
Q ss_pred cccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLV 99 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~ 99 (255)
..+.||+++|++|+|||++++. +|+.+.+|+.++... ++|+||||||+||.+. +.+
T Consensus 77 l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~---------------~~piilv~NK~DL~~~--~~v------ 133 (301)
T 1u0l_A 77 LTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---------------ELETVMVINKMDLYDE--DDL------ 133 (301)
T ss_dssp ETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---------------TCEEEEEECCGGGCCH--HHH------
T ss_pred eeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEeHHHcCCc--hhH------
Confidence 4568999999999999999998 899999999987652 3899999999999765 222
Q ss_pred HHHHHHHHHcCC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 100 DAARQWVEKQGL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 100 e~a~~~a~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
+++.++++.++. ..+++ |||++|.||+++|..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~---------------~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 134 RKVRELEEIYSGLYPIVK---------------TSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHTTTSCEEE---------------CCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHHhhhCcEEE---------------EECCCCcCHHHHHHHhcC
Confidence 346778877762 27788 999999999999887653
No 114
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.43 E-value=8.6e-14 Score=116.74 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=49.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|++.+.. ...+.||+++|++|||||+++.. ++..+..|+.++.... ......+|++|||
T Consensus 58 i~Dt~G~~~~~~------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~piilv~ 122 (214)
T 2fh5_B 58 LIDLPGHESLRF------QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS---------MALKNSPSLLIAC 122 (214)
T ss_dssp EEECCCCHHHHH------HHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH---------HTSTTCCEEEEEE
T ss_pred EEECCCChhHHH------HHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh---------hhcccCCCEEEEE
Confidence 677777664431 02456899999999999999964 5776665554443320 0112358999999
Q ss_pred eCCCCCCC
Q 025248 81 NKADVAAK 88 (255)
Q Consensus 81 NK~DL~~~ 88 (255)
||+||...
T Consensus 123 nK~Dl~~~ 130 (214)
T 2fh5_B 123 NKQDIAMA 130 (214)
T ss_dssp ECTTSTTC
T ss_pred ECCCCCCc
Confidence 99999865
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.42 E-value=2.4e-14 Score=116.79 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=77.3
Q ss_pred ccccccC-CcEEEEEEECCChhhHHHH-HHHHHH--------HHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCC
Q 025248 22 VRVLVVG-DSGVIFVHDLSQRRTKTSL-QKWAVE--------IATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 91 (255)
Q Consensus 22 ~r~Yyr~-adgvIlVyDvT~~~Sfe~l-~~Wl~e--------i~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r 91 (255)
...||++ ++++++|||++|..+|+++ ..|..+ +.... ....+|++|||||+|+... +
T Consensus 72 ~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~piilv~nK~Dl~~~--~ 138 (190)
T 2cxx_A 72 IVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL-----------RELDIPTIVAVNKLDKIKN--V 138 (190)
T ss_dssp HHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH-----------HHTTCCEEEEEECGGGCSC--H
T ss_pred HHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH-----------HhcCCceEEEeehHhccCc--H
Confidence 3468888 9999999999999999998 688753 22210 0234899999999999865 2
Q ss_pred ccCCccHHHHHHHHHHHcCCCC-------eeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 92 RGSSGNLVDAARQWVEKQGLLP-------SSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 92 ~Vs~~~l~e~a~~~a~~~gl~~-------~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
. +++.++++++++ + +++ |||++|.||+++|+++++.+.+.+
T Consensus 139 ---~----~~~~~~~~~~~~-~~~~~~~~~~~---------------~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 139 ---Q----EVINFLAEKFEV-PLSEIDKVFIP---------------ISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp ---H----HHHHHHHHHHTC-CGGGHHHHEEE---------------CCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred ---H----HHHHHHHHHhhh-hhhccCCcEEE---------------EecCCCCCHHHHHHHHHHhcchhh
Confidence 2 678899999987 4 477 999999999999999999887643
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.41 E-value=2e-14 Score=113.96 Aligned_cols=108 Identities=13% Similarity=0.027 Sum_probs=73.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|.+...........+...|++++|++|+|||+++..+... .|+.++... ..+|++||||
T Consensus 53 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--------------~~~p~ilv~n 116 (161)
T 2dyk_A 53 LVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--------------KGKPVILVAT 116 (161)
T ss_dssp EEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--------------HTCCEEEEEE
T ss_pred EEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--------------cCCCEEEEEE
Confidence 688888764321000011223468999999999999999755543 344443331 1289999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+... . +++.+++ +.++.++++ +||++|.|++++|+++++.+
T Consensus 117 K~Dl~~~--~--------~~~~~~~-~~~~~~~~~---------------~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 117 KVDDPKH--E--------LYLGPLY-GLGFGDPIP---------------TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CCCSGGG--G--------GGCGGGG-GGSSCSCEE---------------CBTTTTBSHHHHHHHHHHHC
T ss_pred Ccccccc--h--------HhHHHHH-hCCCCCeEE---------------EecccCCChHHHHHHHHHhC
Confidence 9999754 1 2344555 567657888 99999999999999988753
No 117
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.39 E-value=1.1e-12 Score=105.76 Aligned_cols=107 Identities=15% Similarity=0.006 Sum_probs=70.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. .....|++++|++|+|||+++....+.+ .++..+.. .++|++||+|
T Consensus 59 l~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~~---------------~~~p~ilv~n 115 (178)
T 2lkc_A 59 FLDTPGHEAFT-------TMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAKA---------------ANVPIIVAIN 115 (178)
T ss_dssp ESCCCSSSSSS-------CSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHGG---------------GSCCEEEEEE
T ss_pred EEECCCCHHHH-------HHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh---------------CCCCEEEEEE
Confidence 68888876443 2345689999999999999994332222 12222222 2389999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC--------CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL--------LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl--------~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+.... . ++.....+..+. ..+++ |||++|.||+++|+++++.+.+
T Consensus 116 K~Dl~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 116 KMDKPEAN-----P----DRVMQELMEYNLVPEEWGGDTIFCK---------------LSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp TTTSSCSC-----H----HHHHHHHTTTTCCBTTTTSSEEEEE---------------CCSSSSHHHHHHHHHHHHHHHH
T ss_pred CccCCcCC-----H----HHHHHHHHhcCcChhHcCCcccEEE---------------EecCCCCCHHHHHHHHHHhhhh
Confidence 99997541 1 223333333221 24556 9999999999999999887765
Q ss_pred Hh
Q 025248 154 RR 155 (255)
Q Consensus 154 ~~ 155 (255)
.+
T Consensus 172 ~~ 173 (178)
T 2lkc_A 172 EE 173 (178)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 118
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.38 E-value=9.1e-14 Score=129.44 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=86.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLS----------QRRTKTSLQKWAVEIATSGTFSAPLASGGPGG 71 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT----------~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~ 71 (255)
+||.+|++.+- ..+..||++++|+|||||++ +..+|++...|+.++.++. ..
T Consensus 165 iwDtaGQe~~R-------~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-----------~~ 226 (340)
T 4fid_A 165 LIDVGGQRSER-------KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-----------FL 226 (340)
T ss_dssp EEECCSCHHHH-------HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-----------GG
T ss_pred cccCCCccccc-------ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-----------cc
Confidence 68888877544 24568999999999999999 8999999999999998742 13
Q ss_pred CCCcEEEEEeCCCCCCCCCCccC----------CccHHHHHHHHHHHcC--------------------------CCCee
Q 025248 72 LPVPYVVIGNKADVAAKEGTRGS----------SGNLVDAARQWVEKQG--------------------------LLPSS 115 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~~~r~Vs----------~~~l~e~a~~~a~~~g--------------------------l~~~~ 115 (255)
.++|+||||||+||..+....+. ..+ .++|.+|+.+.- -+.++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~-~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDN-AVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTC-HHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCC-HHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 45999999999998653100000 001 255655554321 12344
Q ss_pred ecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 116 EELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 116 Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+ |||+++.||+++|..+.+.|++
T Consensus 306 ~---------------TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 P---------------TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp E---------------ECTTCHHHHHHHHHHHHHHHHH
T ss_pred E---------------EEeeCcHHHHHHHHHHHHHHHH
Confidence 5 9999999999999999999988
No 119
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.36 E-value=3.8e-14 Score=116.44 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=66.3
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
.||+++|++|+|||++++.+|+. ..|+.++.+.. ..++|++||+||+||.... . .
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~------------~~~~p~ilv~NK~Dl~~~~--~-~--------- 133 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL------------PAKLPITVVRNKADITGET--L-G--------- 133 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS------------CTTCCEEEEEECHHHHCCC--C-E---------
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc------------ccCCCEEEEEECccCCcch--h-h---------
Confidence 47999999999999999999874 57888887752 2348999999999996541 1 1
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+++..+. ++++ |||++|.||+++|+++++.+
T Consensus 134 -~~~~~~~-~~~~---------------~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 134 -MSEVNGH-ALIR---------------LSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp -EEEETTE-EEEE---------------CCTTTCTTHHHHHHHHHHHC
T ss_pred -hhhccCC-ceEE---------------EeCCCCCCHHHHHHHHHHHh
Confidence 1111233 6778 99999999999999888765
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.33 E-value=4.1e-13 Score=109.53 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=68.5
Q ss_pred cccccCC---cEEEEEEECCChhhHH--HHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCcc
Q 025248 23 RVLVVGD---SGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 97 (255)
Q Consensus 23 r~Yyr~a---dgvIlVyDvT~~~Sfe--~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~ 97 (255)
+.||+++ +++++|+|.++..+.. .+..|+.+. .+|++||+||+|+.....+.+.
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------------------~~p~i~v~nK~Dl~~~~~~~~~--- 154 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------------------NIPFTIVLTKMDKVKMSERAKK--- 154 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------------------TCCEEEEEECGGGSCGGGHHHH---
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------------------CCCEEEEEEChhcCChHHHHHH---
Confidence 4577776 9999999999875544 334554332 2899999999999755222222
Q ss_pred HHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 98 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 98 l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
.+++.+++...+..++++ |||++|.||+++|+++.+.+.+
T Consensus 155 -~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 155 -LEEHRKVFSKYGEYTIIP---------------TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp -HHHHHHHHHSSCCSCEEE---------------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHhhcCCCceEE---------------EecCCCCCHHHHHHHHHHHhhc
Confidence 256677777656558888 9999999999999999887743
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.33 E-value=3.3e-13 Score=110.30 Aligned_cols=110 Identities=9% Similarity=-0.078 Sum_probs=80.7
Q ss_pred CcccccccccccCCCCCCCccccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV--GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr--~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|++.+.. ........+.||+ +++++++|+|.++ ++.+..|+.++... .+|++||
T Consensus 58 l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~---------------~~piilv 118 (188)
T 2wjg_A 58 VVDLPGVYSLTA-NSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEM---------------GANLLLA 118 (188)
T ss_dssp EEECCCCSCCSS-SSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT---------------TCCEEEE
T ss_pred EEECCCcCcccc-ccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhc---------------CCCEEEE
Confidence 677777664320 0000012346776 4999999999875 67778899888652 3899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+||+|+... +.+. +++.++++.+++ ++++ +||+++.|++++|+++++.+.+
T Consensus 119 ~nK~Dl~~~--~~~~-----~~~~~~~~~~~~-~~~~---------------~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 119 LNKMDLAKS--LGIE-----IDVDKLEKILGV-KVVP---------------LSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp EECHHHHHH--TTCC-----CCHHHHHHHHTS-CEEE---------------CBGGGTBSHHHHHHHHHHHHTT
T ss_pred EEhhhcccc--ccch-----HHHHHHHHHhCC-CeEE---------------EEecCCCCHHHHHHHHHHHHHh
Confidence 999999765 4444 346788888886 8999 9999999999999999887754
No 122
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.29 E-value=2.2e-12 Score=124.93 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=80.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||.+|++.+. .....|++++|++|+|||+++. +.+..|+.++..+ ..++|+|||||
T Consensus 102 i~Dt~G~e~~~-------~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~-------------~~~~pvilV~N 158 (535)
T 3dpu_A 102 FWDFGGQEIMH-------ASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY-------------GGKSPVIVVMN 158 (535)
T ss_dssp EECCCSCCTTT-------TTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHH-------------SSSCCEEEEEC
T ss_pred EEECCcHHHHH-------HHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHh-------------CCCCCEEEEEE
Confidence 56766655333 1344688999999999999865 5677899999886 23489999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
|+|+... +.+.. +++.+++...++ ++++ +||++|.||+++|+.+.+.+.+.
T Consensus 159 K~Dl~~~--~~v~~----~~~~~~~~~~~~-~~~~---------------vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 159 KIDENPS--YNIEQ----KKINERFPAIEN-RFHR---------------ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CTTTCTT--CCCCH----HHHHHHCGGGTT-CEEE---------------CCC-----CTTHHHHHHHHHTCT
T ss_pred CCCcccc--cccCH----HHHHHHHHhcCC-ceEE---------------EecCcccCHHHHHHHHHHHHhcc
Confidence 9999876 66665 778888888886 7899 99999999999999998877654
No 123
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.24 E-value=8.3e-12 Score=102.43 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=64.8
Q ss_pred ccccccCC---cEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccH
Q 025248 22 VRVLVVGD---SGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 98 (255)
Q Consensus 22 ~r~Yyr~a---dgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l 98 (255)
...|++++ |++|+|||+++..++..+. ++..+.. ..+|++||+||+|+... +.+.
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---------------~~~p~i~v~nK~Dl~~~--~~~~---- 153 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---------------YGIPVIVIATKADKIPK--GKWD---- 153 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---------------TTCCEEEEEECGGGSCG--GGHH----
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---------------cCCCEEEEEECcccCCh--HHHH----
Confidence 44678877 9999999999999988753 2222222 12899999999999865 3322
Q ss_pred HHHHHHHHHHcC---CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 99 VDAARQWVEKQG---LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 99 ~e~a~~~a~~~g---l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
....++.+.++ ...+++ +||++|.||+++|+++.+.+
T Consensus 154 -~~~~~~~~~~~~~~~~~~~~---------------~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 154 -KHAKVVRQTLNIDPEDELIL---------------FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp -HHHHHHHHHHTCCTTSEEEE---------------CCTTTCTTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcccCCCceEE---------------EEccCCCCHHHHHHHHHHHh
Confidence 22233333232 236777 99999999999999998765
No 124
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.24 E-value=8.3e-12 Score=113.15 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=85.2
Q ss_pred Ccccccccccc---cCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKE---LNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~---~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|..... ..|......+..|++++|++|+|+|+++..+++....|+..+... ++|++|
T Consensus 63 lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---------------~~pvil 127 (308)
T 3iev_A 63 FLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---------------NKPVIV 127 (308)
T ss_dssp EEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---------------CCCEEE
T ss_pred EEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---------------CCCEEE
Confidence 68888765321 000001123456899999999999999999999998988887652 389999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+||+|+... +... .+...++++.++ ...+++ +||++|.|++++|+.+.+.+.
T Consensus 128 V~NK~Dl~~~--~~~~----~~~~~~l~~~~~~~~~i~~---------------vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 128 VINKIDKIGP--AKNV----LPLIDEIHKKHPELTEIVP---------------ISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp EEECGGGSSS--GGGG----HHHHHHHHHHCTTCCCEEE---------------CBTTTTBSHHHHHHHHHHHSC
T ss_pred EEECccCCCC--HHHH----HHHHHHHHHhccCCCeEEE---------------EeCCCCCCHHHHHHHHHHhCc
Confidence 9999999733 2222 266778888874 447888 999999999999998887763
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.24 E-value=2.2e-12 Score=108.36 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=69.7
Q ss_pred CcccccccccccCCCCCCCcccccccC----CcEEEEEEECC-ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVG----DSGVIFVHDLS-QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 76 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~----adgvIlVyDvT-~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi 76 (255)
+||++|++.+. .....|+++ +|++|+|||++ ++++|+.+..|+.++...... .....+|+
T Consensus 59 l~Dt~G~~~~~-------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ 123 (218)
T 1nrj_B 59 LVDFPGHVKLR-------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES--------SCENGIDI 123 (218)
T ss_dssp EEECCCCGGGT-------HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHH--------HSTTCCCE
T ss_pred EEECCCcHHHH-------HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccc--------cccCCCCE
Confidence 58877776432 245668887 99999999999 999999999999998763100 00235899
Q ss_pred EEEEeCCCCCCCCCCccC--CccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCC
Q 025248 77 VVIGNKADVAAKEGTRGS--SGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARY 139 (255)
Q Consensus 77 iLVGNK~DL~~~~~r~Vs--~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~n 139 (255)
+||+||+|+... +.+. ...+.+++.+++...++ .+++ +||++|.+
T Consensus 124 ilv~nK~Dl~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~---------------~Sa~~~~~ 170 (218)
T 1nrj_B 124 LIACNKSELFTA--RPPSKIKDALESEIQKVIERRKK-SLNE---------------VERKINEE 170 (218)
T ss_dssp EEEEECTTSTTC--CCHHHHHHHHHHHHHHHHHHHHH-HHHC-----------------------
T ss_pred EEEEEchHhccc--CCHHHHHHHHHHHHHHHHHHHhc-cccc---------------cccccccc
Confidence 999999999876 4433 11122567778877775 7888 99999865
No 126
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.24 E-value=7.5e-12 Score=113.53 Aligned_cols=99 Identities=18% Similarity=0.060 Sum_probs=76.7
Q ss_pred CCCCCC-CcccccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCC
Q 025248 14 NGGPPT-GQVRVLVVGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGT 91 (255)
Q Consensus 14 ~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r 91 (255)
...+.+ ...|.|++++|++|+|||++++. +|+.+..|+..+... ++|++||+||+||.+. +
T Consensus 64 ~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~---------------~~~~ilV~NK~DL~~~--~ 126 (302)
T 2yv5_A 64 EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF---------------KVEPVIVFNKIDLLNE--E 126 (302)
T ss_dssp EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT---------------TCEEEEEECCGGGCCH--H
T ss_pred eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC---------------CCCEEEEEEcccCCCc--c
Confidence 334443 34578999999999999999997 999999999977652 3899999999999765 2
Q ss_pred ccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 92 RGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 92 ~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
.++ ..++..+++++.|+ ++++ +||++|.|+++++..+.
T Consensus 127 ~v~---~~~~~~~~~~~~g~-~~~~---------------~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 127 EKK---ELERWISIYRDAGY-DVLK---------------VSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHH---HHHHHHHHHHHTTC-EEEE---------------CCTTTCTTHHHHHHHTT
T ss_pred ccH---HHHHHHHHHHHCCC-eEEE---------------EECCCCCCHHHHHhhcc
Confidence 222 01456677777786 7888 99999999998887653
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.19 E-value=1.3e-11 Score=116.72 Aligned_cols=115 Identities=11% Similarity=-0.012 Sum_probs=80.8
Q ss_pred Cccccccccccc--CCCCCCCccc--ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKEL--NGGPPTGQVR--VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~--~g~~~~gq~r--~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
+||++|...+.. .+.+.+...+ .|++.||++|+|||+++..+++.+ .|+..+... .+|+|
T Consensus 227 l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---------------~~~ii 290 (436)
T 2hjg_A 227 IVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---------------GKAVV 290 (436)
T ss_dssp ETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---------------TCEEE
T ss_pred EEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---------------CCcEE
Confidence 799988643321 1223333333 388999999999999999999886 588777652 28999
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHH-HHHHHHc---CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAA-RQWVEKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a-~~~a~~~---gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
||+||+|+.+. +.++. ++. .++.+.+ +..++++ +||++|.||+++|+.+.+.+.+
T Consensus 291 iv~NK~Dl~~~--~~~~~----~~~~~~~~~~l~~~~~~~~~~---------------~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 291 IVVNKWDAVDK--DESTM----KEFEENIRDHFQFLDYAPILF---------------MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp EEEECGGGSCC--CTTHH----HHHHHHHHHHCGGGTTSCEEE---------------CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEECccCCCc--chHHH----HHHHHHHHHhcccCCCCCEEE---------------EecccCCCHHHHHHHHHHHHHH
Confidence 99999999865 44332 222 2233332 2236677 9999999999999999887754
No 128
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.18 E-value=1.6e-11 Score=113.80 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=84.0
Q ss_pred CcccccccccccCCCCCCCcccccccC---CcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVG---DSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~---adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP 75 (255)
+||.+|.......+ .+....|++. ++++|+|+|+++ +++++.+..|+.++..+. +....+|
T Consensus 210 l~DtPG~i~~a~~~---~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~----------~~l~~~p 276 (342)
T 1lnz_A 210 MADLPGLIEGAHQG---VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN----------LRLTERP 276 (342)
T ss_dssp EEEHHHHHHHTTCT---TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC----------SSTTTSC
T ss_pred EecCCCCccccccc---chhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhh----------hhhcCCC
Confidence 68888754322111 1233456664 999999999999 899999999999998852 2234589
Q ss_pred EEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 76 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 76 iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
++||+||+|+... + +...++++.++. .++++ +||+++.|++++++++.+.+.+
T Consensus 277 ~ilV~NK~Dl~~~--~--------e~~~~l~~~l~~~~~v~~---------------iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 277 QIIVANKMDMPEA--A--------ENLEAFKEKLTDDYPVFP---------------ISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp BCBEEECTTSTTH--H--------HHHHHHHHHCCSCCCBCC---------------CSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEEEEECccCCCC--H--------HHHHHHHHHhhcCCCEEE---------------EECCCCcCHHHHHHHHHHHHhh
Confidence 9999999998754 1 346677777652 25566 9999999999999999887743
No 129
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.18 E-value=6.2e-12 Score=112.76 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=77.8
Q ss_pred CcccccccccccCCCCCCCccccccc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV--GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr--~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|++.+.... ......+.|++ ++|++|+|||+++.+++ ..|..++... .+|++||
T Consensus 53 l~DtpG~~~~~~~~-~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~---------------~~p~ilv 113 (272)
T 3b1v_A 53 IQDLPGIYSMSPYS-PEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIET---------------GIPVTIA 113 (272)
T ss_dssp EEECCCCSCSSCSS-HHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT---------------CSCEEEE
T ss_pred EEECCCcCccCCCC-hHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHhc---------------CCCEEEE
Confidence 67777765432100 01123467887 59999999999986554 4677777652 2899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
+||+|+... +.+. ..+.++++.+|+ ++++ |||++|.||+++|+.+++.
T Consensus 114 ~NK~Dl~~~--~~~~-----~~~~~l~~~lg~-~vi~---------------~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 114 LNMIDVLDG--QGKK-----INVDKLSYHLGV-PVVA---------------TSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp EECHHHHHH--TTCC-----CCHHHHHHHHTS-CEEE---------------CBTTTTBSHHHHHHHHHHS
T ss_pred EEChhhCCc--CCcH-----HHHHHHHHHcCC-CEEE---------------EEccCCCCHHHHHHHHHHH
Confidence 999999765 3343 346778888897 8899 9999999999999888764
No 130
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.16 E-value=1e-11 Score=110.02 Aligned_cols=108 Identities=14% Similarity=0.012 Sum_probs=78.6
Q ss_pred CcccccccccccCCCCCCCcccccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLV--VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yy--r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|...+.... ......+.|+ .++|++|+|+|.++.++. ..|+.++... .+|++||
T Consensus 56 l~DtpG~~~~~~~~-~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---------------~~pvilv 116 (258)
T 3a1s_A 56 LIDLPGTYSLGYSS-IDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM---------------EKKVILA 116 (258)
T ss_dssp EEECCCCSSCCSSS-HHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT---------------TCCEEEE
T ss_pred EEECCCcCccCCCC-HHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc---------------CCCEEEE
Confidence 67777765432100 0001235676 589999999999987654 3577777652 3899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+||+|+... +.+.. .+.++++.+|+ ++++ +||++|.|++++|+.+.+.+
T Consensus 117 ~NK~Dl~~~--~~i~~-----~~~~l~~~lg~-~vi~---------------~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 117 MTAIDEAKK--TGMKI-----DRYELQKHLGI-PVVF---------------TSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp EECHHHHHH--TTCCB-----CHHHHHHHHCS-CEEE---------------CCTTTCTTHHHHHHHHHHHH
T ss_pred EECcCCCCc--cchHH-----HHHHHHHHcCC-CEEE---------------EEeeCCcCHHHHHHHHHHHh
Confidence 999999765 44442 36788899997 8999 99999999999999988764
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.14 E-value=4.4e-11 Score=113.73 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=80.5
Q ss_pred Ccccccccccc--cCCCCCCCccc--ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKE--LNGGPPTGQVR--VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~--~~g~~~~gq~r--~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
+||++|-..+. ..+.+.+...+ .|++.||++|+|+|.++..+.. ...|+..+... .+|+|
T Consensus 247 l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~~---------------~~~~i 310 (456)
T 4dcu_A 247 IVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHEA---------------GKAVV 310 (456)
T ss_dssp ETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---------------TCEEE
T ss_pred EEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHHc---------------CCCEE
Confidence 79998843221 11233333333 3789999999999999865533 34666666552 28999
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHHHHHHHc----CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQ----GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~----gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
||+||+||... +.++. +++.+.+++. +..++++ |||++|.||+++|+.+.+.+.+
T Consensus 311 lv~NK~Dl~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~---------------~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 311 IVVNKWDAVDK--DESTM----KEFEENIRDHFQFLDYAPILF---------------MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp EEEECGGGSCC--CSSHH----HHHHHHHHHHCGGGTTSCEEE---------------CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEEChhcCCC--chHHH----HHHHHHHHHhcccCCCCCEEE---------------EcCCCCcCHHHHHHHHHHHHHH
Confidence 99999999876 55554 5555555554 2346777 9999999999999999987755
Q ss_pred H
Q 025248 154 R 154 (255)
Q Consensus 154 ~ 154 (255)
.
T Consensus 370 ~ 370 (456)
T 4dcu_A 370 H 370 (456)
T ss_dssp H
T ss_pred h
Confidence 4
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.13 E-value=1.3e-11 Score=117.74 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=81.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|.+.+...|......+..|++++|++|+|||.+... ....|+.++.+. ++|+|||+|
T Consensus 87 liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---------------~~piIvV~N 148 (423)
T 3qq5_A 87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---------------EIPFVVVVN 148 (423)
T ss_dssp EEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---------------TCCEEEECC
T ss_pred EEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---------------CCCEEEEEe
Confidence 68888887554334444444567999999999999994333 335788777763 389999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+|+... +.. +.+.++++++++ ++++ +||++|.|++++|+.+.+.+.+
T Consensus 149 K~Dl~~~--~~~------~~~~~l~~~~g~-~v~~---------------vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 149 KIDVLGE--KAE------ELKGLYESRYEA-KVLL---------------VSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CCTTTTC--CCT------HHHHHSSCCTTC-CCCC---------------CSSCCTTSTTTHHHHHHHHSCC
T ss_pred CcCCCCc--cHH------HHHHHHHHHcCC-CEEE---------------EECCCCCCHHHHHHHHHHhhhh
Confidence 9999876 221 456677777775 7777 9999999999999998887643
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.12 E-value=1.2e-10 Score=112.50 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=70.1
Q ss_pred CcccccccccccCCCCCC--CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPT--GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~--gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
|||+.|.+.... -...+ ..+..|++++|++|+|||+++..+++.+..|...+... .++|+|+|
T Consensus 285 liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--------------~~~piIvV 349 (476)
T 3gee_A 285 LTDTAGLREAGE-EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--------------PAAKFLTV 349 (476)
T ss_dssp EEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--------------TTSEEEEE
T ss_pred EEECCCCCcchh-HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--------------CCCCEEEE
Confidence 799999764321 11112 23456899999999999999999997554444333331 14899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
+||+|+... +.+ ...++.+. ++.++++ +|||+|.|+++.|+++.+.+.
T Consensus 350 ~NK~Dl~~~--~~~-------~~~~l~~~-~~~~~i~---------------vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 350 ANKLDRAAN--ADA-------LIRAIADG-TGTEVIG---------------ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EECTTSCTT--THH-------HHHHHHHH-HTSCEEE---------------CBTTTTBSHHHHHHHHTHHHH
T ss_pred EECcCCCCc--cch-------hHHHHHhc-CCCceEE---------------EEECCCCCHHHHHHHHHHHHh
Confidence 999999866 222 12344444 2347888 999999999999999988764
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.10 E-value=8.7e-11 Score=108.19 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=76.2
Q ss_pred ccccCCcEEEEEEECCChh--hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~--Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
.++..+|++|+|+|+++.. +++....|+.++.... ..+|+|+|+||+|+... ..+ ++
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-------------~~~piilV~NK~Dl~~~--~~~------~~ 300 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-------------KDLPFLVVINKIDVADE--ENI------KR 300 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-------------TTSCEEEEECCTTTCCH--HHH------HH
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-------------CCCCEEEEEECcccCCh--HHH------HH
Confidence 4567899999999999988 8899899999998741 14899999999999765 221 44
Q ss_pred HHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 102 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+.++++..++ ++++ +||++|.||+++|+++.+.+.+
T Consensus 301 ~~~~~~~~~~-~~~~---------------iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 301 LEKFVKEKGL-NPIK---------------ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHTTC-CCEE---------------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CeEE---------------EeCCCCcCHHHHHHHHHHHHHH
Confidence 6667777775 7888 9999999999999999988855
No 135
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.08 E-value=9.5e-12 Score=110.26 Aligned_cols=108 Identities=15% Similarity=-0.031 Sum_probs=75.6
Q ss_pred CcccccccccccCC---CCCCCcccccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE
Q 025248 2 FWKERERENKELNG---GPPTGQVRVLV--VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 76 (255)
Q Consensus 2 ~w~~~~~~~~~~~g---~~~~gq~r~Yy--r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi 76 (255)
+||++|.......+ .......+.|+ +++|++|+|+|.++.+++..+..|+ .. ..+|+
T Consensus 52 lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l---~~---------------~~~pv 113 (256)
T 3iby_A 52 ITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQL---FE---------------LGKPV 113 (256)
T ss_dssp EEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHH---TT---------------SCSCE
T ss_pred EEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHH---HH---------------cCCCE
Confidence 67777765332110 01112345677 8999999999999977776655443 32 13899
Q ss_pred EEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 77 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 77 iLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
+||+||+|+... +.+. .....+++.+|+ ++++ +||++|.|++++|+.+.+.
T Consensus 114 ilv~NK~Dl~~~--~~~~-----~~~~~l~~~lg~-~vi~---------------~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 114 VVALNMMDIAEH--RGIS-----IDTEKLESLLGC-SVIP---------------IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEEEECHHHHHH--TTCE-----ECHHHHHHHHCS-CEEE---------------CBGGGTBSHHHHHHHHHTC
T ss_pred EEEEEChhcCCc--CCcH-----HHHHHHHHHcCC-CEEE---------------EECCCCCCHHHHHHHHHhh
Confidence 999999999765 3333 225568888886 8899 9999999999998888764
No 136
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.07 E-value=6.8e-11 Score=99.34 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=63.7
Q ss_pred ccccccC---CcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccH
Q 025248 22 VRVLVVG---DSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 98 (255)
Q Consensus 22 ~r~Yyr~---adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l 98 (255)
+..|+++ +|++|+|+|.++..+.. -..|+..+... .+|+|||+||+|+... +.+.. .
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~~---------------~~p~i~v~nK~Dl~~~--~~~~~--~ 165 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAPT---------------GKPIHSLLTKCDKLTR--QESIN--A 165 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGGG---------------CCCEEEEEECGGGSCH--HHHHH--H
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHhc---------------CCCEEEEEeccccCCh--hhHHH--H
Confidence 3457776 78899999999865533 23555555442 2899999999999764 22110 1
Q ss_pred HHHHHHHHHHc------CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 99 VDAARQWVEKQ------GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 99 ~e~a~~~a~~~------gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
.++..+..... ...++++ +||++|.||+++|+++.+.+..
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~---------------~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 166 LRATQKSLDAYRDAGYAGKLTVQL---------------FSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHHHTCCSCEEEEE---------------EBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhcccCCCCeEEE---------------eecCCCcCHHHHHHHHHHhcCc
Confidence 12223333332 3336777 9999999999999999887744
No 137
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.03 E-value=6.1e-11 Score=104.71 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=72.2
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCC-CCCCCCCCccCCccH
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKA-DVAAKEGTRGSSGNL 98 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~-DL~~~~~r~Vs~~~l 98 (255)
...+.||.++||+|||.|.+|++.++ .+..+.++..-... ......+|++|++||. |+... ++
T Consensus 117 plWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~e-------e~~L~gapLLVlANKqqDlp~A----ms---- 180 (227)
T 3l82_B 117 PQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDP-------AFGSSGRPLLVLSCISQGDVKR----MP---- 180 (227)
T ss_dssp CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCT-------TSSCSCSCEEEEEEESSTTSCB----CC----
T ss_pred HHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcc-------hhhhCCCeEEEEeCCCcCccCC----CC----
Confidence 34468999999999999999997765 55555444331100 0012459999999995 77543 23
Q ss_pred HHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 99 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 99 ~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
+.++++.+++...-..+.+.. |||++|+|+.|+++|+...+..+
T Consensus 181 ---~~EI~e~L~L~~l~R~W~Iq~---------csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 181 ---CFYLAHELHLNLLNHPWLVQD---------TEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp ---HHHHHHHTTGGGGCSCEEEEE---------EETTTCTTHHHHHHHHTTTTTTC
T ss_pred ---HHHHHHHcCCcCCCCCEEEEE---------eECCCCcCHHHHHHHHHHHHHhh
Confidence 456677776632212334444 99999999999999999876443
No 138
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.02 E-value=3.2e-11 Score=107.43 Aligned_cols=107 Identities=14% Similarity=0.036 Sum_probs=71.1
Q ss_pred CcccccccccccCCC---CCCCcccccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE
Q 025248 2 FWKERERENKELNGG---PPTGQVRVLV--VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 76 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~---~~~gq~r~Yy--r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi 76 (255)
+||++|...+...+. ......+.|+ +++|++|+|+|.++.+++..+ ..++.+. .+|+
T Consensus 54 liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---------------~~p~ 115 (274)
T 3i8s_A 54 LVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---------------GIPC 115 (274)
T ss_dssp EEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---------------TCCE
T ss_pred EEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---------------CCCE
Confidence 678877664431110 0001123444 799999999999997665554 4444442 2899
Q ss_pred EEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 77 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 77 iLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|||+||+|+... +.+. ....++++.+|+ ++++ +||++|.|++++|+.+.+
T Consensus 116 ivv~NK~Dl~~~--~~~~-----~~~~~l~~~lg~-~~i~---------------~SA~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 116 IVALNMLDIAEK--QNIR-----IEIDALSARLGC-PVIP---------------LVSTRGRGIEALKLAIDR 165 (274)
T ss_dssp EEEEECHHHHHH--TTEE-----ECHHHHHHHHTS-CEEE---------------CCCGGGHHHHHHHHHHHT
T ss_pred EEEEECccchhh--hhHH-----HHHHHHHHhcCC-CEEE---------------EEcCCCCCHHHHHHHHHH
Confidence 999999999765 3333 235678888886 8899 999999777766665544
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.00 E-value=1.2e-10 Score=110.25 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=75.6
Q ss_pred CcccccccccccCC--CCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNG--GPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g--~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|.+.....+ .....|+..|+++||++|+|||.++..++.. .|+.++.+. .++|++||
T Consensus 53 l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--------------~~~p~ilv 116 (439)
T 1mky_A 53 LVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK--------------STVDTILV 116 (439)
T ss_dssp EEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--------------HTCCEEEE
T ss_pred EEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--------------cCCCEEEE
Confidence 68888876322111 0112355679999999999999998776654 333333321 12789999
Q ss_pred EeCCCCCCCCCCccCCccHHHHH-HHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAA-RQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a-~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
+||+|+... +. .++ .++. ++|+..+++ +||++|.|++++|+.+++.+.+.
T Consensus 117 ~NK~D~~~~----~~-----~~~~~~~~-~lg~~~~~~---------------iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 117 ANKAENLRE----FE-----REVKPELY-SLGFGEPIP---------------VSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp EESCCSHHH----HH-----HHTHHHHG-GGSSCSCEE---------------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EeCCCCccc----cH-----HHHHHHHH-hcCCCCEEE---------------EeccCCCCHHHHHHHHHHhcccc
Confidence 999998532 11 223 4454 456556777 99999999999999999888653
No 140
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.99 E-value=3.7e-10 Score=99.64 Aligned_cols=110 Identities=12% Similarity=-0.018 Sum_probs=77.1
Q ss_pred CcccccccccccCCCCCCCcccccc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLV--VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yy--r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||++|...+... .......+.|+ .++|++|+|+|.++.+ ....|..++... ..+|+++|
T Consensus 54 l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--------------~~~p~ilv 115 (271)
T 3k53_A 54 VVDLPGIYSLTAH-SIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM--------------EVKNIILV 115 (271)
T ss_dssp EEECCCCSCCCSS-CHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--------------TCCSEEEE
T ss_pred EEeCCCccccccC-CHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc--------------CCCCEEEE
Confidence 5777665532210 00001245677 6899999999999853 444566666652 12899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
+||+|+... +.+.. ...++++.+|+ ++++ +||++|.|+++.|+.+.+.+-
T Consensus 116 ~NK~Dl~~~--~~~~~-----~~~~l~~~lg~-~~~~---------------~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 116 LNKFDLLKK--KGAKI-----DIKKMRKELGV-PVIP---------------TNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp EECHHHHHH--HTCCC-----CHHHHHHHHSS-CEEE---------------CBGGGTBTHHHHHHHHHHHHH
T ss_pred EEChhcCcc--cccHH-----HHHHHHHHcCC-cEEE---------------EEeCCCCCHHHHHHHHHHHHh
Confidence 999998765 33443 26778888896 8888 999999999999998887653
No 141
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.98 E-value=9.9e-11 Score=106.19 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=69.4
Q ss_pred CcccccccccccC-CCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHH-HHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELN-GGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAV-EIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~-g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~-ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
|||++|....... +.........|++++|++|+|||+++..+.. ..|+. .+... ..++|++||
T Consensus 59 l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-------------~~~~p~ilV 123 (301)
T 1wf3_A 59 FVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-------------VGKVPILLV 123 (301)
T ss_dssp EEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-------------TTTSCEEEE
T ss_pred EecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-------------cCCCCEEEE
Confidence 7888886531100 0001123457899999999999999886655 35654 44432 124899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHc-CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQ-GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~-gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+||+|+... +. ...++++.+ ++..+++ +||++|.|++++|+.+.+.+
T Consensus 124 ~NK~Dl~~~--~~--------~~~~~~~~~~~~~~~~~---------------iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 124 GNKLDAAKY--PE--------EAMKAYHELLPEAEPRM---------------LSALDERQVAELKADLLALM 171 (301)
T ss_dssp EECGGGCSS--HH--------HHHHHHHHTSTTSEEEE---------------CCTTCHHHHHHHHHHHHTTC
T ss_pred EECcccCCc--hH--------HHHHHHHHhcCcCcEEE---------------EeCCCCCCHHHHHHHHHHhc
Confidence 999999754 11 022333333 3335667 99999977777777666544
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.94 E-value=1.3e-09 Score=105.52 Aligned_cols=108 Identities=15% Similarity=0.060 Sum_probs=75.5
Q ss_pred Cccccccc-ccccCCCCCCC--cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERE-NKELNGGPPTG--QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~-~~~~~g~~~~g--q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
+||+.|.+ .... -...+| .+..|++.||++|+|||+++..+++...-| +.+ . .+|+||
T Consensus 295 l~DTaG~~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-~----------------~~piiv 355 (482)
T 1xzp_A 295 IVDTAGVRSETND-LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-K----------------NKRYLV 355 (482)
T ss_dssp EEESSCCCSSCCT-TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-T----------------TSSEEE
T ss_pred EEECCCccccchh-hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh-c----------------CCCEEE
Confidence 78888875 3321 122222 234689999999999999999998775432 222 1 278999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
|+||+||... ++. +++.+++. .+ .++++ +||++|.|+++.|+.+.+.+..
T Consensus 356 V~NK~DL~~~----~~~----~~~~~~~~-~~-~~~i~---------------iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 356 VINKVDVVEK----INE----EEIKNKLG-TD-RHMVK---------------ISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp EEEECSSCCC----CCH----HHHHHHHT-CS-TTEEE---------------EEGGGTCCHHHHHHHHHHHTHH
T ss_pred EEECcccccc----cCH----HHHHHHhc-CC-CcEEE---------------EECCCCCCHHHHHHHHHHHHhh
Confidence 9999999643 222 34444432 22 26788 9999999999999999987764
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.91 E-value=1.4e-09 Score=101.83 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=73.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+- ..+..++..+|++|||+|.++..++.....|+..+.... ..|+|||+|
T Consensus 79 iiDtPGh~~~~-------~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--------------~~~iivviN 137 (403)
T 3sjy_A 79 FIDAPGHEVLM-------ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--------------VKNLIIVQN 137 (403)
T ss_dssp EEECCCCGGGH-------HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--------------CCCEEEEEE
T ss_pred EEECCCcHHHH-------HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--------------CCCEEEEEE
Confidence 56666554322 234468899999999999999988888888887776641 148999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+.+. .... ...++..++.+..+. .++++ +||++|.|+++.++.+.+.+
T Consensus 138 K~Dl~~~--~~~~--~~~~~i~~~l~~~~~~~~~ii~---------------vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 138 KVDVVSK--EEAL--SQYRQIKQFTKGTWAENVPIIP---------------VSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp CGGGSCH--HHHH--HHHHHHHHHHTTSTTTTCCEEE---------------CBTTTTBSHHHHHHHHHHHS
T ss_pred Cccccch--HHHH--HHHHHHHHHHHhhCCCCCEEEE---------------EECCCCcChHHHHHHHHHhC
Confidence 9999765 1111 011223333322221 24555 99999999988888877654
No 144
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.90 E-value=1.2e-09 Score=108.35 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=78.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. +.+..+++.+|++|+|+|.++..+++.+..|...+.. ++|+|+|+|
T Consensus 75 liDTPGh~dF~-------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----------------~ipiIvViN 131 (599)
T 3cb4_D 75 FIDTPGHVDFS-------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----------------DLEVVPVLN 131 (599)
T ss_dssp EEECCCCGGGH-------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----------------TCEEEEEEE
T ss_pred EEECCCchHHH-------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----------------CCCEEEeee
Confidence 45555554321 3455689999999999999999999988888765533 289999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+|+... + ..+...++.+.+++. .+++ +||++|.||++.++.+++.+.
T Consensus 132 KiDl~~a--~------~~~v~~ei~~~lg~~~~~vi~---------------vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 132 KIDLPAA--D------PERVAEEIEDIVGIDATDAVR---------------CSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CTTSTTC--C------HHHHHHHHHHHTCCCCTTCEE---------------ECTTTCTTHHHHHHHHHHHSC
T ss_pred ccCcccc--c------HHHHHHHHHHHhCCCcceEEE---------------eecccCCCchhHHHHHhhcCC
Confidence 9999765 2 114466777777752 3667 999999999998888877653
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.89 E-value=1.8e-10 Score=108.88 Aligned_cols=109 Identities=10% Similarity=-0.009 Sum_probs=67.0
Q ss_pred CcccccccccccC-CCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEE
Q 025248 2 FWKERERENKELN-GGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~-g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVG 80 (255)
+||++|.+..+.. ......++..|+++||++|+|+|.++..++.. .|+.++.. ..++|++||+
T Consensus 55 l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~--------------~~~~pvilv~ 118 (436)
T 2hjg_A 55 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY--------------RTKKPVVLAV 118 (436)
T ss_dssp EEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT--------------TCCSCEEEEE
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH--------------HcCCCEEEEE
Confidence 6888776522110 00112345679999999999999999888765 45555444 2348999999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
||+|+... +. ++.++. ++|+..+++ +||++|.|++++++.+++.+.
T Consensus 119 NK~D~~~~--~~--------~~~~~~-~lg~~~~~~---------------iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 119 NKLDNTEM--RA--------NIYDFY-SLGFGEPYP---------------ISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ECCCC---------------CCCSSG-GGSSCCCEE---------------CBTTTTBTHHHHHHHHHHTGG
T ss_pred ECccCccc--hh--------hHHHHH-HcCCCCeEE---------------EeCcCCCChHHHHHHHHHhcC
Confidence 99998754 11 111222 345546677 999999999999998887653
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.88 E-value=1.7e-09 Score=103.95 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=65.7
Q ss_pred CcccccccccccCCCCCC--CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERENKELNGGPPT--GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~--gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
+||+.|.+... .-...+ ..+..+++++|++|+|||.++..+++. ..|+..+.. .|++||
T Consensus 276 liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~-----------------~piivV 336 (462)
T 3geh_A 276 VLDTAGIRETS-DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVKH-----------------RPLILV 336 (462)
T ss_dssp ECC---------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHTT-----------------SCEEEE
T ss_pred EEECCccccch-hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhccC-----------------CcEEEE
Confidence 79998864322 111122 234568999999999999999888766 455555422 689999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+||+|+... +.+.. ..++. ...++++ +||++|.|+++.++.+.+.+..
T Consensus 337 ~NK~Dl~~~--~~~~~------~~~~~---~~~~~i~---------------iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 337 MNKIDLVEK--QLITS------LEYPE---NITQIVH---------------TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EECTTSSCG--GGSTT------CCCCT---TCCCEEE---------------EBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCcc--hhhHH------HHHhc---cCCcEEE---------------EECCCCCCHHHHHHHHHHHHhc
Confidence 999999865 33221 11111 1236677 9999999999999998887643
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.87 E-value=2.5e-09 Score=87.59 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=54.4
Q ss_pred CcccccccccccCCCCCCCcccccccC----CcEEEEEEECC-ChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVG----DSGVIFVHDLS-QRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 76 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~----adgvIlVyDvT-~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi 76 (255)
|||.+|.+.+. .....|+++ +|++|+|||++ +..+|+.+..|+.++....... ....+|+
T Consensus 95 l~Dt~G~~~~~-------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~ 159 (193)
T 2ged_A 95 LVDFPGHVKLR-------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS--------CENGIDI 159 (193)
T ss_dssp EEEETTCCBSS-------CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHH--------STTCCCE
T ss_pred EEECCCCchHH-------HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhc--------cccCCCE
Confidence 68888766432 234557776 89999999999 9999999999998887631100 0235899
Q ss_pred EEEEeCCCCCCC
Q 025248 77 VVIGNKADVAAK 88 (255)
Q Consensus 77 iLVGNK~DL~~~ 88 (255)
+||+||+|+...
T Consensus 160 ilv~nK~Dl~~~ 171 (193)
T 2ged_A 160 LIACNKSELFTA 171 (193)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEEchHhcCC
Confidence 999999999866
No 148
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.85 E-value=2.2e-09 Score=106.50 Aligned_cols=105 Identities=16% Similarity=0.117 Sum_probs=77.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+- +.+..+++.+|++|||+|.++..+++.+..|...... .+|+|+|+|
T Consensus 77 liDTPGh~dF~-------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~----------------~ipiIvviN 133 (600)
T 2ywe_A 77 LIDTPGHVDFS-------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ----------------DLVIIPVIN 133 (600)
T ss_dssp EECCCCSGGGH-------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT----------------TCEEEEEEE
T ss_pred EEECCCcHhHH-------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC----------------CCCEEEEEe
Confidence 46666555321 2455678999999999999999999998888765432 289999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+|+... + ..+...++.+.+++. .+++ +||++|.||++.|+.+++.+.
T Consensus 134 KiDl~~a--~------~~~v~~el~~~lg~~~~~vi~---------------vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 134 KIDLPSA--D------VDRVKKQIEEVLGLDPEEAIL---------------ASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CTTSTTC--C------HHHHHHHHHHTSCCCGGGCEE---------------CBTTTTBSHHHHHHHHHHHSC
T ss_pred ccCcccc--C------HHHHHHHHHHhhCCCcccEEE---------------EEeecCCCchHHHHHHHHhcc
Confidence 9999765 2 114456677766752 3566 999999999998888877653
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.85 E-value=4.3e-09 Score=99.50 Aligned_cols=115 Identities=17% Similarity=0.053 Sum_probs=72.4
Q ss_pred Cccccccccccc---CCCCCCCccc--ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE
Q 025248 2 FWKERERENKEL---NGGPPTGQVR--VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY 76 (255)
Q Consensus 2 ~w~~~~~~~~~~---~g~~~~gq~r--~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi 76 (255)
+||++|.+.+.. .+...+...+ .+++.+|++|+|+|.++..+++.. .+...+.. ..+|+
T Consensus 232 l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---------------~~~~~ 295 (439)
T 1mky_A 232 FVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---------------RGRAS 295 (439)
T ss_dssp ESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---------------TTCEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---------------cCCCE
Confidence 678777543221 1223333322 478899999999999998887763 23333333 22899
Q ss_pred EEEEeCCCCCCCCCCccCCccHHHHH-HHHHHHc---CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 77 VVIGNKADVAAKEGTRGSSGNLVDAA-RQWVEKQ---GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 77 iLVGNK~DL~~~~~r~Vs~~~l~e~a-~~~a~~~---gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
+||+||+|+... +.++. ++. .++.+++ +..++++ +||++|.||+++|+.+.+.+.
T Consensus 296 ilv~NK~Dl~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~---------------~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 296 VVVFNKWDLVVH--REKRY----DEFTKLFREKLYFIDYSPLIF---------------TSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp EEEEECGGGSTT--GGGCH----HHHHHHHHHHCGGGTTSCEEE---------------CBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECccCCCc--hhhHH----HHHHHHHHHHhccCCCCcEEE---------------EECCCCCCHHHHHHHHHHHHH
Confidence 999999999865 33333 222 2333333 2236677 999999999999999987664
Q ss_pred H
Q 025248 153 R 153 (255)
Q Consensus 153 ~ 153 (255)
+
T Consensus 355 ~ 355 (439)
T 1mky_A 355 S 355 (439)
T ss_dssp H
T ss_pred h
Confidence 4
No 150
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.83 E-value=9.5e-10 Score=101.16 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=69.2
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHH---HHhCCCCCCCCCCCCCCCCCcEEEEEeC-CCCCCCCCCccCCcc
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEI---ATSGTFSAPLASGGPGGLPVPYVVIGNK-ADVAAKEGTRGSSGN 97 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei---~~~~~~s~~~~s~~~~~~~iPiiLVGNK-~DL~~~~~r~Vs~~~ 97 (255)
.+.||.++||+|||.|.+|++.++ .+..+.++ .+.. .....+|++|.+|| .|+... ++
T Consensus 204 Wr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~----------~~l~~apLLVfANKkQDlp~A----ms--- 265 (312)
T 3l2o_B 204 IQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPA----------FGSSGRPLLVLSCISQGDVKR----MP--- 265 (312)
T ss_dssp HHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHH----------HHCTTCCEEEEEEESSTTSCB----CC---
T ss_pred HHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcch----------hhcCCCeEEEEeCCcccccCC----CC---
Confidence 368999999999999999998765 44433322 2110 00234899999997 588644 22
Q ss_pred HHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 98 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 98 l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
+.++++++++...-..+.++. |||++|+|+.|+++|+...+..+
T Consensus 266 ----~~EI~e~L~L~~l~r~W~Iq~---------csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 266 ----CFYLAHELHLNLLNHPWLVQD---------TEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp ----HHHHHHHTTGGGGCSCEEEEE---------EETTTCTTHHHHHHHHHHHSCC-
T ss_pred ----HHHHHHHcCCccCCCcEEEEe---------cccCCCcCHHHHHHHHHHHHHhh
Confidence 456677776632112333444 99999999999999999887443
No 151
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.83 E-value=9.4e-10 Score=99.42 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=74.7
Q ss_pred Cccccccc-c-cccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEE
Q 025248 2 FWKERERE-N-KELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVI 79 (255)
Q Consensus 2 ~w~~~~~~-~-~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLV 79 (255)
|||++|.+ . ....+......+..+++.+|++++|+|.++ +.....|+.+... ...+|++||
T Consensus 60 ~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--------------~~~~P~ilv 122 (301)
T 1ega_A 60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--------------EGKAPVILA 122 (301)
T ss_dssp EESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--------------SSSSCEEEE
T ss_pred EEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--------------hcCCCEEEE
Confidence 67777654 1 110010112345678999999999999987 4444567665554 224899999
Q ss_pred EeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 80 GNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 80 GNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+||+|+... +. .+.+...++++.+++..++. +||+++.|+++.++.+...+
T Consensus 123 lNK~D~~~~--~~----~~~~~l~~l~~~~~~~~~i~---------------iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 123 VNKVDNVQE--KA----DLLPHLQFLASQMNFLDIVP---------------ISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp EESTTTCCC--HH----HHHHHHHHHHTTSCCSEEEE---------------CCTTTTTTHHHHHHHHHTTC
T ss_pred EECcccCcc--HH----HHHHHHHHHHHhcCcCceEE---------------EECCCCCCHHHHHHHHHHhC
Confidence 999998752 11 12255666766666545777 99999999888888877654
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.80 E-value=4.5e-09 Score=100.76 Aligned_cols=104 Identities=10% Similarity=-0.019 Sum_probs=64.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHH-----HHHHHHHHHhCCCCCCCCCCCCCCCCCcE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSL-----QKWAVEIATSGTFSAPLASGGPGGLPVPY 76 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l-----~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi 76 (255)
|||++|++.+- ..+..+++++|++|||+|.++..++..+ ..+...+... ....|+
T Consensus 115 iiDTPG~~~f~-------~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-------------~~~~~i 174 (483)
T 3p26_A 115 IVDAPGHRDFV-------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-------------LGIHNL 174 (483)
T ss_dssp EECCCCCGGGH-------HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-------------TTCCCE
T ss_pred EEECCCcHHHH-------HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-------------cCCCcE
Confidence 67777776432 2345689999999999999998765442 1222222221 111469
Q ss_pred EEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHHH
Q 025248 77 VVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDKE 142 (255)
Q Consensus 77 iLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e 142 (255)
|||+||+|+.+. +....+.+.+++.++.++.++ .++++ +||++|.|+++
T Consensus 175 IvviNK~Dl~~~--~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~---------------iSA~~g~gi~e 227 (483)
T 3p26_A 175 IIAMNKMDNVDW--SQQRFEEIKSKLLPYLVDIGFFEDNINWVP---------------ISGFSGEGVYK 227 (483)
T ss_dssp EEEEECGGGGTT--CHHHHHHHHHHHHHHHHHHTCCGGGEEEEE---------------CCSSSCTTSSS
T ss_pred EEEEECcCcccc--hHHHHHHHHHHHHHHHHHcCCCcccceEEE---------------EeeecCCCccc
Confidence 999999999864 333333344556666666664 24555 99999999985
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=4.4e-10 Score=104.32 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=61.5
Q ss_pred ccccCCcEE-----------EEEEECCC-hhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCC
Q 025248 24 VLVVGDSGV-----------IFVHDLSQ-RRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEG 90 (255)
Q Consensus 24 ~Yyr~adgv-----------IlVyDvT~-~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~ 90 (255)
.||++++++ ++||++++ ..+|..+. .|+..+. ..+|+|+|+||+|+...
T Consensus 128 ~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----------------~~~piIlV~NK~Dl~~~-- 189 (361)
T 2qag_A 128 RYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----------------NKVNIVPVIAKADTLTL-- 189 (361)
T ss_dssp HHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----------------S-SCEEEEEECCSSSCH--
T ss_pred HHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----------------cCCCEEEEEECCCCCCH--
Confidence 677777665 48999987 77888776 5655431 23899999999999865
Q ss_pred CccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhcc
Q 025248 91 TRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYF 157 (255)
Q Consensus 91 r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~ 157 (255)
+.+.. +.+++.++++.+++ ++++ +||+++.+ +++|..+++.|.+...+
T Consensus 190 ~ev~~--~k~~i~~~~~~~~i-~~~~---------------~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 190 KERER--LKKRILDEIEEHNI-KIYH---------------LPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHH--HHHHHHHHTTCC-C-CSCC---------------CC----------CHHHHHHHHHTCSC
T ss_pred HHHHH--HHHHHHHHHHHCCC-CEEe---------------CCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 33321 12456667766675 6777 99999999 89999999999876544
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.77 E-value=1e-08 Score=96.13 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=61.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ----RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~----~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
|||++|++.+-. .+..++..+|++|||+|.++ ..+++.+..| ... + ..|+|
T Consensus 85 iiDtPGh~~f~~-------~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-------------~-~~~ii 139 (408)
T 1s0u_A 85 FVDSPGHETLMA-------TMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-------------G-IDKII 139 (408)
T ss_dssp EEECSSHHHHHH-------HHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-------------T-CCCEE
T ss_pred EEECCCHHHHHH-------HHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-------------C-CCeEE
Confidence 566666553321 11223456799999999994 5677666544 221 1 14799
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHHHHHHHcC--CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG--LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g--l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
||+||+|+.+.. ... ...+++.++++... -.++++ +||++|.|+++.++.|.+.+
T Consensus 140 vv~NK~Dl~~~~--~~~--~~~~~i~~~l~~~~~~~~~~i~---------------vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 140 IVQNKIDLVDEK--QAE--ENYEQIKEFVKGTIAENAPIIP---------------ISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp EEEECTTSSCTT--TTT--THHHHHHHHHTTSTTTTCCEEE---------------C------CHHHHHHHHHHHS
T ss_pred EEEEccCCCCHH--HHH--HHHHHHHHHHhhcCCCCCeEEE---------------eeCCCCCCHHHHHHHHHHhC
Confidence 999999998652 211 12255666665431 125666 99999999988888777644
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.76 E-value=3.8e-09 Score=99.98 Aligned_cols=113 Identities=9% Similarity=0.021 Sum_probs=75.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC-cEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV-PYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~i-PiiLVG 80 (255)
|||++|++.+. ..+..+++.+|++|||+|.++ .+|+++..|..+..++.... ....+ ++|||+
T Consensus 88 iiDtpG~~~f~-------~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~--------~~~~~~~iivvi 151 (435)
T 1jny_A 88 IIDAPGHRDFV-------KNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILA--------KTMGLDQLIVAV 151 (435)
T ss_dssp ECCCSSSTTHH-------HHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHH--------HHTTCTTCEEEE
T ss_pred EEECCCcHHHH-------HHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHH--------HHcCCCeEEEEE
Confidence 67777776543 235568999999999999999 89997766655554421000 01124 589999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 145 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~ 145 (255)
||+|+.+..-.......+.+++.++++..++ .++++ +||++|.|+.+.+.
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~---------------iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVP---------------VVAPSGDNITHKSE 205 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEE---------------CBTTTTBTTTBCCS
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEE---------------eecccCcccccccc
Confidence 9999976310111112234677888888774 24666 99999999987654
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.74 E-value=4e-09 Score=103.44 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=69.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|++.+. ..+..+++.+|++|||+|.++....+....|. .+.. ..+|+|||+|
T Consensus 56 ~iDTPGhe~f~-------~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~-~~~~---------------~~vPiIVViN 112 (537)
T 3izy_P 56 FLDTPGHAAFS-------AMRARGTQVTDIVILVVAADDGVMKQTVESIQ-HAKD---------------AHVPIVLAIN 112 (537)
T ss_dssp CEECSSSCCTT-------TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHH-HHHT---------------TTCCEEECCB
T ss_pred EEECCChHHHH-------HHHHHHHccCCEEEEEEECCCCccHHHHHHHH-HHHH---------------cCCcEEEEEe
Confidence 67777765322 23445899999999999999977766654442 2222 2389999999
Q ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 82 KADVAAKEGTRGSSGNLVDAARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 82 K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
|+|+.......+.. +. ..+++. .+-..+++++ +||++|.|+++.|+.+...+
T Consensus 113 KiDl~~~~~~~v~~-----~l----~~~~~~~e~~~~~~~iv~---------vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 113 KCDKAEADPEKVKK-----EL----LAYDVVCEDYGGDVQAVH---------VSALTGENMMALAEATIALA 166 (537)
T ss_dssp SGGGTTTSCCSSSS-----HH----HHTTSCCCCSSSSEEECC---------CCSSSSCSSHHHHHHHHHHH
T ss_pred cccccccchHHHHH-----HH----HhhhhhHHhcCCCceEEE---------EECCCCCCchhHHHHHHHhh
Confidence 99997652222221 11 122210 1111234555 99999999999999888654
No 157
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.72 E-value=5.2e-09 Score=100.78 Aligned_cols=106 Identities=14% Similarity=0.016 Sum_probs=73.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+- ..+..++..+|++|||+|.++ ..+++.+. .+... .+|+||
T Consensus 77 iiDtPGh~~~~-------~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---------------~ip~Iv 130 (482)
T 1wb1_A 77 LVDAPGHADLI-------RAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDHF---------------NIPIIV 130 (482)
T ss_dssp ECCCSSHHHHH-------HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---------------TCCBCE
T ss_pred EEECCChHHHH-------HHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc---------------CCCEEE
Confidence 67887776432 234567899999999999998 56666543 22221 278899
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHc-CC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQ-GL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~-gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
|+||+|+.+.+ .. ..+.++..++++.. ++ .++++ +||++|.|+++.++.|.+.+.
T Consensus 131 viNK~Dl~~~~--~~--~~~~~~l~~~l~~~~~~~~~~ii~---------------vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 131 VITKSDNAGTE--EI--KRTEMIMKSILQSTHNLKNSSIIP---------------ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECTTSSCHH--HH--HHHHHHHHHHHHHSSSGGGCCEEE---------------CCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCcccch--hH--HHHHHHHHHHHhhhcccccceEEE---------------EECcCCCCHHHHHHHHHHhhc
Confidence 99999997541 11 11235566666665 32 25566 999999999999988888764
No 158
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.72 E-value=5.4e-08 Score=96.34 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=70.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+. .....+++.+|++|||||+++ +.|++.+..+ ... ++|+||
T Consensus 74 liDTPGhe~F~-------~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~~---------------~vPiIV 127 (594)
T 1g7s_A 74 FIDTPGHEAFT-------TLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RMY---------------RTPFVV 127 (594)
T ss_dssp EECCCTTSCCT-------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HHT---------------TCCEEE
T ss_pred EEECCCcHHHH-------HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HHc---------------CCeEEE
Confidence 67777765332 234457899999999999999 7888775432 221 289999
Q ss_pred EEeCCCCCCCCCCcc----------CCccHH----HHHHHH---HHHcCCCC--------eeecCCCCCCCCCCCCccee
Q 025248 79 IGNKADVAAKEGTRG----------SSGNLV----DAARQW---VEKQGLLP--------SSEELPLTESFPGGGGLIAA 133 (255)
Q Consensus 79 VGNK~DL~~~~~r~V----------s~~~l~----e~a~~~---a~~~gl~~--------~~Ee~p~~e~~~~~~~~~tS 133 (255)
|+||+|+........ ...++. +...++ ..+.++.. +...+|+.+ +|
T Consensus 128 ViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~---------vS 198 (594)
T 1g7s_A 128 AANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIP---------IS 198 (594)
T ss_dssp EEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEE---------CC
T ss_pred EecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEE---------Ee
Confidence 999999975310000 001111 111111 22223210 001234555 99
Q ss_pred eecCCCHHHHHHHHHHHHH
Q 025248 134 AKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 134 Ak~g~nv~e~f~~l~~~li 152 (255)
|++|.|+++.++.+...+.
T Consensus 199 A~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 199 AITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred ccCCCCchhHHHHHHhhcc
Confidence 9999999999999887664
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.71 E-value=6.7e-09 Score=97.12 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=66.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVG 80 (255)
|||++|++.+- ..+..+++.+|++|||+|.++....+ ...|+..+... .+| +|||+
T Consensus 79 iiDtpG~~~f~-------~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~---------------~ip~iivvi 135 (405)
T 2c78_A 79 HVDCPGHADYI-------KNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---------------GVPYIVVFM 135 (405)
T ss_dssp EEECCCSGGGH-------HHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT---------------TCCCEEEEE
T ss_pred EEECCChHHHH-------HHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCEEEEEE
Confidence 67777776432 23456889999999999999876543 45666666542 277 89999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYD 140 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv 140 (255)
||+|+... ... .+.+.++..++++++++ .++++ +||++|.|+
T Consensus 136 NK~Dl~~~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~---------------~SA~~g~~v 181 (405)
T 2c78_A 136 NKVDMVDD--PEL-LDLVEMEVRDLLNQYEFPGDEVPVIR---------------GSALLALEQ 181 (405)
T ss_dssp ECGGGCCC--HHH-HHHHHHHHHHHHHHTTSCTTTSCEEE---------------CCHHHHHHH
T ss_pred ECccccCc--HHH-HHHHHHHHHHHHHHhcccccCCCEEE---------------ccHHHhhhh
Confidence 99999743 110 01122467778888774 35666 999999774
No 160
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.70 E-value=1.8e-08 Score=93.94 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=66.5
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
.+.|+++++++|+|+|+++.. ..|..++.+.. .+.|++||+||+||.+. .+....+.+.
T Consensus 63 l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-------------~~~p~ilV~NK~DL~~~---~~~~~~~~~~ 121 (368)
T 3h2y_A 63 LNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-------------GNNKVLLVGNKADLIPK---SVKHDKVKHW 121 (368)
T ss_dssp HHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-------------SSSCEEEEEECGGGSCT---TSCHHHHHHH
T ss_pred HHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-------------CCCcEEEEEEChhcCCc---ccCHHHHHHH
Confidence 346889999999999999853 47888887752 24899999999999754 2222112222
Q ss_pred HHHHHHHcCCC--CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 102 ARQWVEKQGLL--PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 102 a~~~a~~~gl~--~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
..+++++.|+. .+++ +||++|.|+++.++.+.+
T Consensus 122 l~~~~~~~g~~~~~v~~---------------iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 122 MRYSAKQLGLKPEDVFL---------------ISAAKGQGIAELADAIEY 156 (368)
T ss_dssp HHHHHHHTTCCCSEEEE---------------CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccEEE---------------EeCCCCcCHHHHHhhhhh
Confidence 33446677752 5677 999999999999888754
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.69 E-value=1.3e-08 Score=95.16 Aligned_cols=111 Identities=15% Similarity=0.029 Sum_probs=71.0
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVG 80 (255)
|||++|++.+- ..+..+++.+|++|||+|.++....+....| ..+... .+| +|||+
T Consensus 70 iiDtpG~~~f~-------~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---------------~vp~iivvi 126 (397)
T 1d2e_A 70 HTDCPGHADYV-------KNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---------------GVEHVVVYV 126 (397)
T ss_dssp EEECSSHHHHH-------HHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---------------TCCCEEEEE
T ss_pred EEECCChHHHH-------HHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---------------CCCeEEEEE
Confidence 67777776542 1345688999999999999996655544444 344332 277 78999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHH-----HH-HHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDK-----EA-VMKFFRM 150 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~-----e~-f~~l~~~ 150 (255)
||+|+.+.. ..+ +.+.+++.++++++++ .++++ +||++|.|.+ +. +..+++.
T Consensus 127 NK~Dl~~~~-~~~--~~~~~~~~~~l~~~~~~~~~~~~i~---------------~SA~~g~n~~~~~~~~g~i~~Ll~~ 188 (397)
T 1d2e_A 127 NKADAVQDS-EMV--ELVELEIRELLTEFGYKGEETPIIV---------------GSALCALEQRDPELGLKSVQKLLDA 188 (397)
T ss_dssp ECGGGCSCH-HHH--HHHHHHHHHHHHHTTSCTTTSCEEE---------------CCHHHHHTTCCTTTTHHHHHHHHHH
T ss_pred ECcccCCCH-HHH--HHHHHHHHHHHHHcCCCcccCcEEE---------------eehhhcccccCCCccCCcHHHHHHH
Confidence 999997531 111 1123567788888774 35666 9999986510 12 5555555
Q ss_pred HHH
Q 025248 151 LIR 153 (255)
Q Consensus 151 li~ 153 (255)
|.+
T Consensus 189 l~~ 191 (397)
T 1d2e_A 189 VDT 191 (397)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.68 E-value=5.4e-09 Score=98.83 Aligned_cols=104 Identities=10% Similarity=-0.037 Sum_probs=68.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC-cEEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV-PYVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~i-PiiLVG 80 (255)
|||++|++.+. ..+..|++.+|++|||+|.++....+ ...|+..+... .+ |+|||+
T Consensus 108 iiDtpGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---------------~~~~iIvvi 164 (434)
T 1zun_B 108 IADTPGHEQYT-------RNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---------------GIKHIVVAI 164 (434)
T ss_dssp EEECCCSGGGH-------HHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---------------TCCEEEEEE
T ss_pred EEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---------------CCCeEEEEE
Confidence 67777766432 23445789999999999999875433 34555544442 14 599999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcC--C--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQG--L--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 145 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g--l--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~ 145 (255)
||+|+.+.. ......+.++..+++++++ . .++++ +||++|.|+++.+.
T Consensus 165 NK~Dl~~~~--~~~~~~i~~~~~~~~~~~g~~~~~~~~i~---------------vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 165 NKMDLNGFD--ERVFESIKADYLKFAEGIAFKPTTMAFVP---------------MSALKGDNVVNKSE 216 (434)
T ss_dssp ECTTTTTSC--HHHHHHHHHHHHHHHHTTTCCCSEEEEEE---------------CCTTTCTTTSSCCT
T ss_pred EcCcCCccc--HHHHHHHHHHHHHHHHHhCCCccCceEEE---------------EeccCCCCcccccc
Confidence 999997631 1001112356677777777 2 24566 99999999987544
No 163
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.66 E-value=1.7e-08 Score=95.89 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=67.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhh---HH---HHHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRT---KT---SLQKWAVEIATSGTFSAPLASGGPGGLPVP 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~S---fe---~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP 75 (255)
|||++|++.+- ..+..+++.||++|||+|.++... |+ .....+..+.. ..+|
T Consensus 99 iiDTPGh~~f~-------~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---------------~~v~ 156 (439)
T 3j2k_7 99 ILDAPGHKSFV-------PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---------------AGVK 156 (439)
T ss_pred EEECCChHHHH-------HHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---------------cCCC
Confidence 67777776542 234568899999999999998632 22 11122222222 2266
Q ss_pred -EEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHH
Q 025248 76 -YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 145 (255)
Q Consensus 76 -iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~ 145 (255)
+|||+||+|+...+........+.++..+++++.|+.+ .+.+++++ +||++|.|+++.++
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~-~~~~~~i~---------iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNP-KKDIHFMP---------CSGLTGANLKEQSD 217 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccc-cCCeeEEE---------eeccCCcccccccc
Confidence 99999999996421111112223356667777777521 11233444 99999999998655
No 164
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.65 E-value=5e-09 Score=92.22 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=68.2
Q ss_pred CcccccccccccCCCCC------CCcccccccCCcEEE-EEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPP------TGQVRVLVVGDSGVI-FVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV 74 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~------~gq~r~Yyr~adgvI-lVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~i 74 (255)
|||++|.......+.+. ...+..|+++++++| +|+|.++..+...+..|+..+.. ..+
T Consensus 129 lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~---------------~~~ 193 (299)
T 2aka_B 129 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---------------QGQ 193 (299)
T ss_dssp EEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---------------TCS
T ss_pred EEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC---------------CCC
Confidence 68887755322111111 123446899999887 69999987666555456655532 238
Q ss_pred cEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHc--CC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 75 PYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQ--GL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 75 PiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~--gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+++|+||+|+... ..... + +.+.. .+ ..+ .++.+ +||++|.|++++++.+.+
T Consensus 194 ~~i~V~NK~Dl~~~--~~~~~----~----~~~~~~~~~~~~~---~~v~~---------~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 194 RTIGVITKLDLMDE--GTDAR----D----VLENKLLPLRRGY---IGVVN---------RSQKDIDGKKDITAALAA 249 (299)
T ss_dssp SEEEEEECGGGSCT--TCCCH----H----HHTTCSSCCTTCE---EECCC---------CCCBCTTSCBCHHHHHHH
T ss_pred eEEEEEEccccCCC--CchHH----H----HHhCCcCcCCCCc---EEEEC---------CChhhccccccHHHHHHH
Confidence 99999999999865 22111 2 22211 10 011 13444 999999999999998887
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.63 E-value=6.4e-09 Score=99.60 Aligned_cols=109 Identities=11% Similarity=-0.008 Sum_probs=63.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR---RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~---~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-ii 77 (255)
|||++|++.+- ..+..+++.+|++|||+|.++. .||+....|...+.... ...+| +|
T Consensus 125 iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~------------~~~vp~ii 185 (467)
T 1r5b_A 125 LLDAPGHKGYV-------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR------------TQGINHLV 185 (467)
T ss_dssp ECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH------------HTTCSSEE
T ss_pred EEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH------------HcCCCEEE
Confidence 68888776442 2345678999999999999986 45554333433332210 12377 99
Q ss_pred EEEeCCCCCCCCCCccCCccHHHHHHHHHHHc-CCC-----CeeecCCCCCCCCCCCCcceeeecCCCHHHHH
Q 025248 78 VIGNKADVAAKEGTRGSSGNLVDAARQWVEKQ-GLL-----PSSEELPLTESFPGGGGLIAAAKEARYDKEAV 144 (255)
Q Consensus 78 LVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~-gl~-----~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f 144 (255)
||+||+|+.......-....+.++..+++++. ++. ++++ +||++|.|+++.+
T Consensus 186 vviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~---------------vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 186 VVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP---------------VSAYTGQNVKDRV 243 (467)
T ss_dssp EEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEE---------------CBTTTTBTTSSCC
T ss_pred EEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEe---------------ccccccccccccc
Confidence 99999999642100000112335677777776 642 3566 9999999998765
No 166
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.62 E-value=7.6e-08 Score=93.96 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=48.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|++.+. ..+..|++.+|++|+|+|.++..+.+....|. .+.. .++|+++|+|
T Consensus 86 liDTPG~~df~-------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---------------~~iPiivviN 142 (528)
T 3tr5_A 86 LLDTPGHADFT-------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---------------RHTPIMTFIN 142 (528)
T ss_dssp EECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---------------TTCCEEEEEE
T ss_pred EEECCCchhHH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---------------cCCCEEEEEe
Confidence 57777765322 24567899999999999999998888877664 3332 2389999999
Q ss_pred CCCCCCC
Q 025248 82 KADVAAK 88 (255)
Q Consensus 82 K~DL~~~ 88 (255)
|+|+...
T Consensus 143 K~Dl~~~ 149 (528)
T 3tr5_A 143 KMDRDTR 149 (528)
T ss_dssp CTTSCCS
T ss_pred CCCCccc
Confidence 9999654
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.61 E-value=1.4e-08 Score=96.92 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=66.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChh---hHH---HHHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRR---TKT---SLQKWAVEIATSGTFSAPLASGGPGGLPVP 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~---Sfe---~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP 75 (255)
|||++|++.+. ..+..+++.+|++|||+|.++.. +|+ ....++..+... .+|
T Consensus 89 iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---------------~v~ 146 (458)
T 1f60_A 89 VIDAPGHRDFI-------KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---------------GVR 146 (458)
T ss_dssp EEECCCCTTHH-------HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---------------TCC
T ss_pred EEECCCcHHHH-------HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---------------CCC
Confidence 67777765332 13456889999999999999763 342 222233333321 265
Q ss_pred -EEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHHHH
Q 025248 76 -YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDKEA 143 (255)
Q Consensus 76 -iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~ 143 (255)
+|||+||+|+.+. .......+.++..++++.+++ .++++ +||++|.|+++.
T Consensus 147 ~iivviNK~Dl~~~--~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~---------------vSA~~g~nv~~~ 202 (458)
T 1f60_A 147 QLIVAVNKMDSVKW--DESRFQEIVKETSNFIKKVGYNPKTVPFVP---------------ISGWNGDNMIEA 202 (458)
T ss_dssp EEEEEEECGGGGTT--CHHHHHHHHHHHHHHHHHHTCCGGGCCEEE---------------CCTTTCBTTTBC
T ss_pred eEEEEEEccccccC--CHHHHHHHHHHHHHHHHHcCCCccCceEEE---------------eecccCcCcccc
Confidence 9999999999742 111111233567778888875 35666 999999998754
No 168
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.59 E-value=5.9e-08 Score=84.27 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=61.4
Q ss_pred ccccCCcEEEEEEECCChhhH-HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHH--
Q 025248 24 VLVVGDSGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLV-- 99 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sf-e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~-- 99 (255)
.+++++|++|+|||+++.... ..+..|+.++... ....| ++||+||+|+.+. . +.. .+.
T Consensus 101 ~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~i~vv~nK~Dl~~~--~-~~~-~i~~~ 163 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-------------DAMGHTIVLFTHKEDLNGG--S-LMD-YMHDS 163 (260)
T ss_dssp HHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-------------GGGGGEEEEEECGGGGTTC--C-HHH-HHHHC
T ss_pred hcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-------------hhhccEEEEEEcccccCCc--c-HHH-HHHhc
Confidence 378999999999999963322 2233454444321 11234 4555559999743 1 110 000
Q ss_pred --HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 100 --DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 100 --e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
+++.++++.++. .+.. ....+ +||+++.|+++.|+.+.+.+.++.
T Consensus 164 ~~~~~~~~~~~~~~-~~~~-~~~~~---------~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 164 DNKALSKLVAACGG-RICA-FNNRA---------EGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp CCHHHHHHHHHTTT-CEEE-CCTTC---------CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhCC-eEEE-ecCcc---------cccccHHHHHHHHHHHHHHHHhCC
Confidence 234557777664 2210 00022 999999999999999998887653
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.59 E-value=9.7e-09 Score=97.54 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=57.8
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
++..|+++||++|||+|.++.-+ ....|+.++... ..+|+|||+||+|+... + +
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--------------~~~pvilV~NK~D~~~~--~--------~ 148 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVT--AADEEVAKILYR--------------TKKPVVLAVNKLDNTEM--R--------A 148 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--------------CCSCEEEEEECC-----------------
T ss_pred HHHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--------------cCCCEEEEEECccchhh--h--------h
Confidence 45678999999999999876444 344566666552 34899999999998744 1 1
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
...++. .+++...++ +||++|.|++++++.+.+.+
T Consensus 149 ~~~e~~-~lg~~~~~~---------------iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 149 NIYDFY-SLGFGEPYP---------------ISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp --CCSG-GGSSSSEEE---------------CCTTTCTTHHHHHHHHHTTG
T ss_pred hHHHHH-HcCCCceEE---------------eecccccchHHHHHHHHhhc
Confidence 111111 234445566 99999999999888887654
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.57 E-value=2.2e-07 Score=86.50 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=72.1
Q ss_pred ccccCCcEEEEEEECCChh--hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRR--TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~--Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
.+++.||++|+|+|+++.. +++.+..|...+.... ..++|+|+|+||+|+... .. . ...+.
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~------------~~~~p~ilV~NK~Dl~~~--~~-~--~~~~~ 315 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG------------VSGKPILVTLNKIDKING--DL-Y--KKLDL 315 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT------------CCSCCEEEEEECGGGCCS--CH-H--HHHHH
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC------------cCCCCEEEEEECCCCCCc--hH-H--HHHHH
Confidence 3688999999999999987 6777777776665531 234899999999999754 11 0 11133
Q ss_pred HHHHHHHc-CC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHhccCC
Q 025248 102 ARQWVEKQ-GL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRRYFSD 159 (255)
Q Consensus 102 a~~~a~~~-gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~~~s~ 159 (255)
+..+++.. .. ..+++ +||+++.|+++.++.+.+.+....++..
T Consensus 316 ~~~l~~~l~~~~~~~~~---------------~SA~~g~gi~~L~~~I~~~l~~~~~~~~ 360 (364)
T 2qtf_A 316 VEKLSKELYSPIFDVIP---------------ISALKRTNLELLRDKIYQLATQLSLEHH 360 (364)
T ss_dssp HHHHHHHHCSCEEEEEE---------------CBTTTTBSHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhcCCCCcEEE---------------EECCCCcCHHHHHHHHHHHhcccCCCCC
Confidence 44455665 21 14566 9999999999999999988877665543
No 171
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.53 E-value=2.6e-08 Score=93.28 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=57.5
Q ss_pred cccCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 25 LVVGDSGVIFVHDLSQ----RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~----~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
.+..+|++|||+|.++ ..+++.+..|. .. + ..|+|||+||+|+.+. .... ...+
T Consensus 103 ~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~-------------~-~~~iivviNK~Dl~~~--~~~~--~~~~ 160 (410)
T 1kk1_A 103 GASLMDGAILVIAANEPCPRPQTREHLMALQ----II-------------G-QKNIIIAQNKIELVDK--EKAL--ENYR 160 (410)
T ss_dssp CGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----HH-------------T-CCCEEEEEECGGGSCH--HHHH--HHHH
T ss_pred hhhhCCEEEEEEECCCCCCChhHHHHHHHHH----Hc-------------C-CCcEEEEEECccCCCH--HHHH--HHHH
Confidence 3456699999999994 56676665442 21 1 1479999999999764 1100 0113
Q ss_pred HHHHHHHHc--CCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 101 AARQWVEKQ--GLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 101 ~a~~~a~~~--gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+..++++.. ...++++ +||++|.|+++.++.|.+.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~---------------vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIP---------------ISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHTTSTTTTCCEEE---------------CBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCCCeEEE---------------eeCCCCCCHHHHHHHHHHhC
Confidence 444555432 1125566 99999999988888777644
No 172
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.52 E-value=1.5e-08 Score=93.16 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=82.2
Q ss_pred CcccccccccccCCCCC------CCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 025248 2 FWKERERENKELNGGPP------TGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~------~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP 75 (255)
|||++|.......+.+. ...++.|++++|++|+|+|.++.+... ..|+..+.... ....|
T Consensus 140 lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~------------~~~~~ 205 (360)
T 3t34_A 140 LIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD------------PSGDR 205 (360)
T ss_dssp EEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSC------------TTCTT
T ss_pred EEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhc------------ccCCC
Confidence 68888866543333332 234567999999999999987665443 34555554421 22378
Q ss_pred EEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 76 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 76 iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
+|+|+||+|+.+. ..... +.+..++..+++ +|++ ++++++.++++.+........+..
T Consensus 206 ~i~V~nK~Dl~~~--~~~~~----~~~~~~~~~~~~-~~~~---------------v~~~s~~~i~~~~~~~~~~~~e~~ 263 (360)
T 3t34_A 206 TFGVLTKIDLMDK--GTDAV----EILEGRSFKLKY-PWVG---------------VVNRSQADINKNVDMIAARKRERE 263 (360)
T ss_dssp EEEEEECGGGCCT--TCCSH----HHHTTSSSCCSS-CCEE---------------ECCCCHHHHHTTCCHHHHHHHHHH
T ss_pred EEEEEeCCccCCC--cccHH----HHHcCccccccC-CeEE---------------EEECChHHhccCCCHHHHHHHHHH
Confidence 9999999999865 23222 334444444554 7777 999999888888777777777788
Q ss_pred ccCCC
Q 025248 156 YFSDE 160 (255)
Q Consensus 156 ~~s~~ 160 (255)
+|...
T Consensus 264 ff~~~ 268 (360)
T 3t34_A 264 YFSNT 268 (360)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 88764
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.51 E-value=1.8e-08 Score=98.01 Aligned_cols=105 Identities=17% Similarity=0.076 Sum_probs=63.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQ---RRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~---~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
|||++|++.+. .....++..+|++|||+|.++ ..+++.+ ..+.. ..+|+||
T Consensus 55 ~iDTPGhe~f~-------~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~---------------~~vPiIV 108 (501)
T 1zo1_I 55 FLDTPGHAAFT-------SMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA---------------AQVPVVV 108 (501)
T ss_dssp EECCCTTTCCT-------TSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH---------------TTCCEEE
T ss_pred EEECCCcHHHH-------HHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh---------------cCceEEE
Confidence 78887776443 223457899999999999998 4555443 22222 2389999
Q ss_pred EEeCCCCCCCCCCccCCccHHHHHHHHHHHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 79 IGNKADVAAKEGTRGSSGNLVDAARQWVEKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 79 VGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
|+||+|+.......+.. .+ .+...+++.++ ..++++ +||++|.|+++.|+.+..
T Consensus 109 viNKiDl~~~~~~~v~~-~l-~~~~~~~~~~~~~~~~v~---------------vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 109 AVNKIDKPEADPDRVKN-EL-SQYGILPEEWGGESQFVH---------------VSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EEECSSSSTTCCCCTTC-CC-CCCCCCTTCCSSSCEEEE---------------CCTTTCTTCTTHHHHTTT
T ss_pred EEEeccccccCHHHHHH-HH-HHhhhhHHHhCCCccEEE---------------EeeeeccCcchhhhhhhh
Confidence 99999997542122211 00 00000111111 124555 999999999988888764
No 174
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.1e-08 Score=98.20 Aligned_cols=104 Identities=10% Similarity=-0.008 Sum_probs=65.1
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChh---hHHHHHHHH--HHHHHhCCCCCCCCCCCCCCCCC-c
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRR---TKTSLQKWA--VEIATSGTFSAPLASGGPGGLPV-P 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~---Sfe~l~~Wl--~ei~~~~~~s~~~~s~~~~~~~i-P 75 (255)
|||++|++.+- ..+..++++||++|||+|.++.. +|.....+. ..+... ..+ +
T Consensus 249 iiDTPG~e~f~-------~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--------------lgi~~ 307 (611)
T 3izq_1 249 IVDAPGHRDFV-------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--------------LGIHN 307 (611)
T ss_dssp EEECCSSSCHH-------HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--------------TTCCE
T ss_pred EEECCCCcccH-------HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--------------cCCCe
Confidence 67777765432 23456899999999999999742 111111111 122221 124 4
Q ss_pred EEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCCHHHH
Q 025248 76 YVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARYDKEA 143 (255)
Q Consensus 76 iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~ 143 (255)
+|||+||+|+.+. +......+.++...+.++.|+ .++++ +||++|.||++.
T Consensus 308 iIVVvNKiDl~~~--~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~---------------vSA~tG~gI~el 362 (611)
T 3izq_1 308 LIIAMNKMDNVDW--SQQRFEEIKSKLLPYLVDIGFFEDNINWVP---------------ISGFSGEGVYKI 362 (611)
T ss_dssp EEEEEECTTTTTT--CHHHHHHHHHHHHHHHHHHTCCGGGCEEEE---------------CCTTTCTTTSSC
T ss_pred EEEEEecccccch--hHHHHHHHHHHHHHHHHhhcccccCccEEe---------------eecccCCCcccc
Confidence 9999999999864 333333334566677777765 24566 999999999865
No 175
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.46 E-value=1e-07 Score=81.94 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=58.3
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCC--ccHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSS--GNLVD 100 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~--~~l~e 100 (255)
..+++++|++|+|+|+++....+ ..|+..+.... ......|++||+||+|+... +.+.. ....+
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~----------~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~~~~ 172 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMF----------GERARSFMILIFTRKDDLGD--TNLHDYLREAPE 172 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHH----------HHHHGGGEEEEEECGGGC--------------CH
T ss_pred HhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHh----------hhhccceEEEEEeCCccCCc--ccHHHHHHhchH
Confidence 35678899999999998654422 24444443310 00112589999999998765 33320 00014
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCCCCcceee-----ecCCCHHHHHHHHHHHHHH
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGGGGLIAAA-----KEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSA-----k~g~nv~e~f~~l~~~li~ 153 (255)
...+++++++. .|.. +++ +...+|.++|..+.+++.+
T Consensus 173 ~l~~l~~~~~~-~~~~---------------~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 173 DIQDLMDIFGD-RYCA---------------LNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHHHHSS-SEEE---------------CCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-EEEE---------------EECCCCccccHHHHHHHHHHHHHHHHH
Confidence 57888888886 5655 333 3445677777776666544
No 176
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.46 E-value=1.1e-07 Score=88.38 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=64.6
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
+.|+++++++|+|+|+++..+ .|..++.+.. .+.|++||+||+||.+. .+....+.+..
T Consensus 66 ~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-------------~~~piilV~NK~DLl~~---~~~~~~~~~~l 124 (369)
T 3ec1_A 66 HRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-------------ADNPILLVGNKADLLPR---SVKYPKLLRWM 124 (369)
T ss_dssp HHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-------------TTSCEEEEEECGGGSCT---TCCHHHHHHHH
T ss_pred HHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-------------CCCCEEEEEEChhcCCC---ccCHHHHHHHH
Confidence 467789999999999999874 5777776642 24799999999999764 22221111223
Q ss_pred HHHHHHcCC--CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 103 RQWVEKQGL--LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 103 ~~~a~~~gl--~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
.+++++.|+ ..++. +||++|.|+++.++.+.+.
T Consensus 125 ~~~~~~~g~~~~~v~~---------------iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 125 RRMAEELGLCPVDVCL---------------VSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HHHHHTTTCCCSEEEE---------------CBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEE---------------EECCCCCCHHHHHHHHHhh
Confidence 333556665 24566 9999999999988887543
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.38 E-value=1.6e-07 Score=99.47 Aligned_cols=111 Identities=13% Similarity=0.055 Sum_probs=71.3
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVG 80 (255)
|||++|++.+- ..+..+++.+|++|||+|.++....+ ...|+..+... .+| +|||+
T Consensus 363 IIDTPGHedF~-------~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---------------gIP~IIVVI 419 (1289)
T 3avx_A 363 HVDCPGHADYV-------KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---------------GVPYIIVFL 419 (1289)
T ss_dssp EEECCCHHHHH-------HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---------------TCSCEEEEE
T ss_pred EEECCChHHHH-------HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---------------CCCeEEEEE
Confidence 67877777543 23446889999999999999875443 33455555543 277 79999
Q ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHcCC----CCeeecCCCCCCCCCCCCcceeeecCCC----HHHHHHHHHHHHH
Q 025248 81 NKADVAAKEGTRGSSGNLVDAARQWVEKQGL----LPSSEELPLTESFPGGGGLIAAAKEARY----DKEAVMKFFRMLI 152 (255)
Q Consensus 81 NK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl----~~~~Ee~p~~e~~~~~~~~~tSAk~g~n----v~e~f~~l~~~li 152 (255)
||+|+.+. ... .+.+.+++.+++++.++ .++++ +||++|.+ ..+.+..++..|.
T Consensus 420 NKiDLv~d--~e~-le~i~eEi~elLk~~G~~~~~vp~Ip---------------vSAktG~ng~~~w~eGI~eLleaL~ 481 (1289)
T 3avx_A 420 NKCDMVDD--EEL-LELVEMEVRELLSQYDFPGDDTPIVR---------------GSALKALEGDAEWEAKILELAGFLD 481 (1289)
T ss_dssp ECCTTCCC--HHH-HHHHHHHHHHHHHHTTSCTTTCCEEE---------------CCSTTTTTCCHHHHHHHHHHHHHHH
T ss_pred eecccccc--hhh-HHHHHHHHHHHHHhccccccceeEEE---------------EEeccCCCCCccccccchhhHhHHh
Confidence 99999753 110 01123567778888774 35566 99999943 1134455555554
Q ss_pred H
Q 025248 153 R 153 (255)
Q Consensus 153 ~ 153 (255)
+
T Consensus 482 ~ 482 (1289)
T 3avx_A 482 S 482 (1289)
T ss_dssp H
T ss_pred h
Confidence 4
No 178
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.36 E-value=2e-07 Score=86.99 Aligned_cols=110 Identities=4% Similarity=-0.072 Sum_probs=70.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE-EEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIG 80 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi-iLVG 80 (255)
|||++|++.+- ..+..+++.+|++|||+| +...+.....|+..+... .+|. |||.
T Consensus 64 iiDtPGh~~f~-------~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~~---------------~i~~~ivvv 119 (370)
T 2elf_A 64 FVDAHSYPKTL-------KSLITALNISDIAVLCIP--PQGLDAHTGECIIALDLL---------------GFKHGIIAL 119 (370)
T ss_dssp EEECTTTTTCH-------HHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHHT---------------TCCEEEEEE
T ss_pred EEECCChHHHH-------HHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHHc---------------CCCeEEEEE
Confidence 57777765331 234457899999999999 455666677777766653 2666 8888
Q ss_pred e-CCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcc--eeeec---CCCHHHHHHHHHHHHHH
Q 025248 81 N-KADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLI--AAAKE---ARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 81 N-K~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~--tSAk~---g~nv~e~f~~l~~~li~ 153 (255)
| |+|+ +. ..+. .+.++..+++++.++ +.+|++ - +||++ +.|+++.++.+.+.+-.
T Consensus 120 NNK~Dl-~~--~~~~--~~~~~i~~~l~~~~~----~~~~ii---------~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 120 TRSDST-HM--HAID--ELKAKLKVITSGTVL----QDWECI---------SLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CCGGGS-CH--HHHH--HHHHHHHHHTTTSTT----TTCEEE---------ECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred EeccCC-CH--HHHH--HHHHHHHHHHHhcCC----CceEEE---------ecccccccCcCCCCHHHHHHHHHhhccc
Confidence 8 9999 43 1111 112344445444432 111221 2 79999 99999999988877643
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.28 E-value=7.1e-07 Score=89.59 Aligned_cols=68 Identities=15% Similarity=0.000 Sum_probs=50.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||++|...... ....+..|+++||++|+|+|.++..++..+..|...+.. ...|+++|+|
T Consensus 178 LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---------------~~~~iiiVlN 238 (695)
T 2j69_A 178 IVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---------------RGLTVFFLVN 238 (695)
T ss_dssp EEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---------------SCCCEEEEEE
T ss_pred EEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---------------hCCCEEEEEE
Confidence 578887543221 123456799999999999999999999888777655432 1368999999
Q ss_pred CCCCCCC
Q 025248 82 KADVAAK 88 (255)
Q Consensus 82 K~DL~~~ 88 (255)
|+|+...
T Consensus 239 K~Dl~~~ 245 (695)
T 2j69_A 239 AWDQVRE 245 (695)
T ss_dssp CGGGGGG
T ss_pred Ccccccc
Confidence 9999754
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.28 E-value=7.5e-08 Score=95.06 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=54.8
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR----------RTKTSLQKWAVEIATSGTFSAPLASGGPGG 71 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~----------~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~ 71 (255)
|||++|++.+- ..+..+++.+|++|||+|.++. .+.+.+ ..+...
T Consensus 259 iiDTPGh~~f~-------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~l-------------- 313 (592)
T 3mca_A 259 IGDAPGHRDFI-------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRAL-------------- 313 (592)
T ss_dssp CCEEESSSEEE-------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHHS--------------
T ss_pred EEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHHc--------------
Confidence 78888887543 2345688999999999999964 333332 222221
Q ss_pred CCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHHHH-HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHH
Q 025248 72 LPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQWV-EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKE 142 (255)
Q Consensus 72 ~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a-~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e 142 (255)
.+| +|||+||+|+... .......+.++..++. +..|+. .+.+++++ +||++|.||++
T Consensus 314 -gip~iIvviNKiDl~~~--~~~~~~~i~~el~~~l~~~~g~~--~~~~~ii~---------iSA~~G~gI~e 372 (592)
T 3mca_A 314 -GISEIVVSVNKLDLMSW--SEDRFQEIKNIVSDFLIKMVGFK--TSNVHFVP---------ISAISGTNLIQ 372 (592)
T ss_dssp -SCCCEEEEEECGGGGTT--CHHHHHHHHHHHHHHHTTTSCCC--GGGEEEEE---------ECSSSCSSSCS
T ss_pred -CCCeEEEEEeccccccc--cHHHHHHHHHHHHHHHHHhhCCC--ccceEEEE---------EecccCccccc
Confidence 255 9999999999753 1111111223444444 444542 01233333 99999999973
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.27 E-value=1e-06 Score=83.76 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=71.1
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
..++.+|+|+|++ ++.+.++..|..++.... ......|.|||+||+|+... . ..+...+++
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la----------~aL~~~P~ILVlNKlDl~~~----~----~~~~l~~~l 294 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYD----------PALLRRPSLVALNKVDLLEE----E----AVKALADAL 294 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHC----------HHHHHSCEEEEEECCTTSCH----H----HHHHHHHHH
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHh----------HHhhcCCEEEEEECCChhhH----H----HHHHHHHHH
Confidence 3699999999999 888999999998887642 00123789999999998743 1 124455555
Q ss_pred HHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHHh
Q 025248 107 EKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~~ 155 (255)
+..+. .++. +||+++.+++++++.+.+.+.+..
T Consensus 295 ~~~g~-~vi~---------------iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 295 AREGL-AVLP---------------VSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp HTTTS-CEEE---------------CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred HhcCC-eEEE---------------EECCCccCHHHHHHHHHHHHHhcc
Confidence 55564 6788 999999999999999998886543
No 182
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.24 E-value=7.6e-07 Score=77.76 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=69.5
Q ss_pred CcccccccccccC-CCCCCCcccccc----cCCcEEEEEEECCChhhHH-HHHHHHHHHHHhCCCCCCCCCCCCCCCCCc
Q 025248 2 FWKERERENKELN-GGPPTGQVRVLV----VGDSGVIFVHDLSQRRTKT-SLQKWAVEIATSGTFSAPLASGGPGGLPVP 75 (255)
Q Consensus 2 ~w~~~~~~~~~~~-g~~~~gq~r~Yy----r~adgvIlVyDvT~~~Sfe-~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP 75 (255)
|||++|....... |......+..++ +++|++|+|+|+++....+ .+..|+.++.. .+..+.|
T Consensus 74 liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~------------~~~~~~~ 141 (247)
T 3lxw_A 74 VVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG------------EDVLKWM 141 (247)
T ss_dssp EEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC------------GGGGGGE
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC------------hhhhccE
Confidence 6888875322211 123333333344 9999999999998532221 22244444321 1122489
Q ss_pred EEEEEeCCCCCCCCCCccCCccHH-----HHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceee---ecCCCHHHHHHHH
Q 025248 76 YVVIGNKADVAAKEGTRGSSGNLV-----DAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAA---KEARYDKEAVMKF 147 (255)
Q Consensus 76 iiLVGNK~DL~~~~~r~Vs~~~l~-----e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSA---k~g~nv~e~f~~l 147 (255)
+|||+||+||.+.. . .+.. +...++++++|. .|.. +. .++ +.+.+|+++++.+
T Consensus 142 iilv~nK~Dl~~~~--~---~~~l~~~~~~~l~~l~~~~g~-~~~~----~~---------~~~~~~~~~~~v~~Ll~~i 202 (247)
T 3lxw_A 142 VIVFTRKEDLAGGS--L---HDYVSNTENRALRELVAECGG-RVCA----FD---------NRATGREQEAQVEQLLGMV 202 (247)
T ss_dssp EEEEECGGGGTTCC--H---HHHHHHCCCHHHHHHHHHTTT-CEEE----CC---------TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEchHhcCCCC--H---HHHHhhcccHHHHHHHHHcCC-eEEE----Ee---------CCCCccccHHHHHHHHHHH
Confidence 99999999997541 1 0111 346778888875 4543 10 333 3367888888888
Q ss_pred HHHHHH
Q 025248 148 FRMLIR 153 (255)
Q Consensus 148 ~~~li~ 153 (255)
.+++.+
T Consensus 203 ~~~~~~ 208 (247)
T 3lxw_A 203 EGLVLE 208 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.22 E-value=9.9e-08 Score=86.29 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=40.2
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
.+++++|+||+|+... +.+. ...+++.++++++++ .+++ +||+++ |++++|..+.+.+.
T Consensus 155 ~~~iilV~~K~Dl~~~--~e~~--~~~~~~~~~~~~~~~-~~~e---------------~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTL--KERE--RLKKRILDEIEEHNI-KIYH---------------LPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp TSCEEEEECCGGGSCH--HHHH--HHHHHHHHHHHHTTC-CCCC---------------CC----------CHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCH--HHHH--HHHHHHHHHHHHcCC-eEEe---------------cCCccc-cccHHHHHHHHHhh
Confidence 3789999999999754 2221 112678889999986 8888 999999 99999999999886
Q ss_pred HHh
Q 025248 153 RRR 155 (255)
Q Consensus 153 ~~~ 155 (255)
+..
T Consensus 214 ~~~ 216 (301)
T 2qnr_A 214 ASI 216 (301)
T ss_dssp TTC
T ss_pred cCC
Confidence 543
No 184
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.22 E-value=1.9e-07 Score=82.50 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=45.3
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHH
Q 025248 29 DSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEK 108 (255)
Q Consensus 29 adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~ 108 (255)
+|++|++.+-+...-...-..|+..+.. .+|+|+|+||+|+... ..+. ...+...+..+.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~----------------~~pvi~V~nK~D~~~~--~e~~--~~~~~i~~~l~~ 175 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE----------------KVNIIPLIAKADTLTP--EECQ--QFKKQIMKEIQE 175 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT----------------TSCEEEEESSGGGSCH--HHHH--HHHHHHHHHHHH
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc----------------cCCEEEEEeccCCCCH--HHHH--HHHHHHHHHHHH
Confidence 7899999887764322222345555432 3899999999998754 1111 111334555556
Q ss_pred cCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 109 QGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 109 ~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
.++ .+++ +||+++.++++.++.+...
T Consensus 176 ~~i-~v~~---------------~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 176 HKI-KIYE---------------FPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp TTC-CCCC---------------C-----------CHHHHHT
T ss_pred cCC-eEEc---------------CCCCCChhHHHHHHHHhcC
Confidence 675 6777 9999998887777666543
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.19 E-value=2.1e-06 Score=86.08 Aligned_cols=64 Identities=23% Similarity=0.190 Sum_probs=48.9
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+..+ ...+..+++.+|++|+|+|.++..+++....|.. +... ++|++||+|
T Consensus 81 liDTPG~~df-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---------------~~p~ivviN 137 (691)
T 1dar_A 81 IIDTPGHVDF-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---------------KVPRIAFAN 137 (691)
T ss_dssp EECCCSSTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---------------TCCEEEEEE
T ss_pred EEECcCccch-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---------------CCCEEEEEE
Confidence 5666666431 2345678999999999999999999988877764 3332 389999999
Q ss_pred CCCCCCC
Q 025248 82 KADVAAK 88 (255)
Q Consensus 82 K~DL~~~ 88 (255)
|+|+...
T Consensus 138 KiD~~~~ 144 (691)
T 1dar_A 138 KMDKTGA 144 (691)
T ss_dssp CTTSTTC
T ss_pred CCCcccC
Confidence 9999754
No 186
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.19 E-value=1.5e-06 Score=72.84 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=58.4
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
.+++++|+|+|.++... .+..+.. ... +|++||+||+|+.+. +.+.. +++.+++
T Consensus 128 ~~~~~~i~vvd~~~~~~--~~~~~~~-~~~-----------------~~~iiv~NK~Dl~~~--~~~~~----~~~~~~~ 181 (221)
T 2wsm_A 128 LGENYRVVMVSVTEGDD--VVEKHPE-IFR-----------------VADLIVINKVALAEA--VGADV----EKMKADA 181 (221)
T ss_dssp CSCSEEEEEEEGGGCTT--HHHHCHH-HHH-----------------TCSEEEEECGGGHHH--HTCCH----HHHHHHH
T ss_pred cccCcEEEEEeCCCcch--hhhhhhh-hhh-----------------cCCEEEEecccCCcc--hhhHH----HHHHHHH
Confidence 46788999999987643 1112221 111 689999999999643 22333 5566666
Q ss_pred HHcCC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 107 EKQGL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 107 ~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
++.+. .++++ +||++|.|++++|+.+.+.+.+
T Consensus 182 ~~~~~~~~i~~---------------~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 182 KLINPRAKIIE---------------MDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHCTTSEEEE---------------CBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHhCCCCeEEE---------------eecCCCCCHHHHHHHHHHHHHH
Confidence 66542 36677 9999999999999999887644
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.17 E-value=2.2e-06 Score=85.56 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=44.2
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
+||+.|++.+. ..+..+++.+|++|+|+|.++.-..... .|+..+... .+|+|||+|
T Consensus 78 liDTpG~~~f~-------~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~---------------~ip~ilv~N 134 (665)
T 2dy1_A 78 LLDAPGYGDFV-------GEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---------------GLPRMVVVT 134 (665)
T ss_dssp EEECCCSGGGH-------HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---------------TCCEEEEEE
T ss_pred EEeCCCccchH-------HHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc---------------cCCEEEEec
Confidence 46666554321 3456789999999999999887665543 455555542 289999999
Q ss_pred CCCCC
Q 025248 82 KADVA 86 (255)
Q Consensus 82 K~DL~ 86 (255)
|+|+.
T Consensus 135 KiD~~ 139 (665)
T 2dy1_A 135 KLDKG 139 (665)
T ss_dssp CGGGC
T ss_pred CCchh
Confidence 99987
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.16 E-value=7.3e-07 Score=84.81 Aligned_cols=94 Identities=10% Similarity=0.051 Sum_probs=56.4
Q ss_pred cccccccCCcEEEEEEECCCh-hhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQR-RTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNL 98 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~-~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l 98 (255)
..+.+++++++.+++|+++.. .+|+.+. .|+.++.. .+++|+|+||+|+... +.+. .+
T Consensus 129 IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----------------~v~iIlVinK~Dll~~--~ev~--~~ 188 (418)
T 2qag_C 129 VNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----------------KVNIIPLIAKADTLTP--EECQ--QF 188 (418)
T ss_dssp -CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----------------TSEEEEEEESTTSSCH--HHHH--HH
T ss_pred HHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----------------cCcEEEEEEcccCccH--HHHH--HH
Confidence 457789999998899998876 6787776 68877642 3899999999998765 3332 13
Q ss_pred HHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 99 VDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 99 ~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
.+++.++++.+++ .+++ +||+++.+++++|..+...
T Consensus 189 k~~i~~~~~~~~i-~~~~---------------~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 189 KKQIMKEIQEHKI-KIYE---------------FPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHTC-CCCC---------------CC-----------------
T ss_pred HHHHHHHHHHcCC-eEEe---------------CCCCCCcCHHHHHHHHHhh
Confidence 3567788888886 7888 9999998888766555443
No 189
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.13 E-value=1.8e-06 Score=71.50 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=59.9
Q ss_pred cCCcEEEEEEECCChhhHHH--HHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~--l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
+.++++++|+|+++..++.. +..|+. . ..+|+++|+||+|+.....++.. .+.+.+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---------------~~~~~~~v~nK~D~~s~~~~~~~----~~~~~~ 164 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---------------SNIAVLVLLTKADKLASGARKAQ----LNMVRE 164 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHH---H---------------TTCCEEEEEECGGGSCHHHHHHH----HHHHHH
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHH---H---------------cCCCeEEEEecccCCCchhHHHH----HHHHHH
Confidence 57899999999999877643 334442 2 12789999999998753111111 145566
Q ss_pred HHHHcCC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 105 WVEKQGL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 105 ~a~~~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
++.+.+. ..+++ |||+++.++++.++.+.+.+
T Consensus 165 ~~~~~~~~~~~~~---------------~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 165 AVLAFNGDVQVET---------------FSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHGGGCSCEEEEE---------------CBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhcCCCCceEE---------------EeecCCCCHHHHHHHHHHHH
Confidence 6655542 24556 99999999999988877654
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.09 E-value=5.9e-06 Score=83.09 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=41.4
Q ss_pred CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
+.+..+++.+|++|+|+|.++..+.+....|. .+.. .++|++||+||+|+...
T Consensus 97 ~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---------------~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 97 IEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---------------YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---------------cCCCEEEEEeCCCcccc
Confidence 45667899999999999999988877766664 3332 23899999999998754
No 191
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.04 E-value=5.1e-06 Score=74.57 Aligned_cols=89 Identities=17% Similarity=0.068 Sum_probs=63.5
Q ss_pred CcccccccCCcEEEEEEECCChhhHH--HHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCcc
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKT--SLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 97 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe--~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~ 97 (255)
.|+...+..+|+||+|+|..++.+.. .+.+|+ . ..|++||.||+||.+. ..
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~----------------~kp~ilVlNK~DL~~~--~~----- 67 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----K----------------NKPRIMLLNKADKADA--AV----- 67 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----S----------------SSCEEEEEECGGGSCH--HH-----
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----C----------------CCCEEEEEECcccCCH--HH-----
Confidence 35556889999999999999998875 344443 1 2789999999999864 00
Q ss_pred HHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 98 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 98 l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
.+...++.++.|+ +++. +||+++.++++.++.+.+.+-
T Consensus 68 -~~~~~~~~~~~g~-~~i~---------------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 68 -TQQWKEHFENQGI-RSLS---------------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -HHHHHHHHHTTTC-CEEE---------------CCTTTCTTGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCC-cEEE---------------EECCCcccHHHHHHHHHHHHH
Confidence 0222333344465 6677 999999999988887766554
No 192
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.94 E-value=1.4e-05 Score=80.18 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=48.7
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEe
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGN 81 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGN 81 (255)
|||++|+..+ ...+..+++.+|++|+|+|.++..+++....|.. +... ++|+++|+|
T Consensus 79 liDTPG~~df-------~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---------------~~p~ilviN 135 (693)
T 2xex_A 79 IIDTPGHVDF-------TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---------------GVPRIVFVN 135 (693)
T ss_dssp EECCCCCSSC-------CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---------------TCCEEEEEE
T ss_pred EEECcCCcch-------HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---------------CCCEEEEEE
Confidence 5677666432 2345678999999999999999999888777753 4442 389999999
Q ss_pred CCCCCCC
Q 025248 82 KADVAAK 88 (255)
Q Consensus 82 K~DL~~~ 88 (255)
|+|+...
T Consensus 136 K~Dl~~~ 142 (693)
T 2xex_A 136 KMDKLGA 142 (693)
T ss_dssp CTTSTTC
T ss_pred CCCcccc
Confidence 9999754
No 193
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.92 E-value=4.9e-06 Score=78.31 Aligned_cols=40 Identities=13% Similarity=-0.038 Sum_probs=21.5
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCCh
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQR 41 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~ 41 (255)
|||++|....-..|...-.+.-.+++++|++|+|+|+++.
T Consensus 75 lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 75 MVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7888886532111222222333578999999999999986
No 194
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.89 E-value=3.3e-06 Score=74.12 Aligned_cols=76 Identities=13% Similarity=0.013 Sum_probs=47.5
Q ss_pred CcccccccccccCCCCCCCcccc--cccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcEEE
Q 025248 2 FWKERERENKELNGGPPTGQVRV--LVVGDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGGLPVPYVV 78 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~--Yyr~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiL 78 (255)
+||++|.+.+..........+.. +++++|++|+|||++.. +|... ..|+..+.... .....+|++|
T Consensus 91 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~----------~~~~~~~iiv 159 (270)
T 1h65_A 91 IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSF----------GKGIWNKAIV 159 (270)
T ss_dssp EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHH----------CGGGGGGEEE
T ss_pred EEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHh----------CcccccCEEE
Confidence 68888876543211110111111 34689999999999764 46554 38888887641 0011269999
Q ss_pred EEeCCCCCCC
Q 025248 79 IGNKADVAAK 88 (255)
Q Consensus 79 VGNK~DL~~~ 88 (255)
|+||+|+...
T Consensus 160 V~nK~Dl~~~ 169 (270)
T 1h65_A 160 ALTHAQFSPP 169 (270)
T ss_dssp EEECCSCCCG
T ss_pred EEECcccCCc
Confidence 9999999765
No 195
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.87 E-value=2.6e-06 Score=75.56 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=55.0
Q ss_pred ccccccCCcEEEEEEECCChhhH-HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTK-TSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sf-e~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
+..|++++|++|+|+|.++..-. .....++..+.. ..+|+++|+||+|+.... ..
T Consensus 161 ~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---------------~~~~~i~v~NK~Dl~~~~--~~------- 216 (315)
T 1jwy_B 161 VMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP---------------EGKRTIGVITKLDLMDKG--TD------- 216 (315)
T ss_dssp HHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---------------SCSSEEEEEECTTSSCSS--CC-------
T ss_pred HHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC---------------CCCcEEEEEcCcccCCcc--hH-------
Confidence 44688999999999998554311 111123333221 238999999999998652 21
Q ss_pred HHHHHHHH--cCC-CCeeecCCCCCCCCCCCCcceeeec---CCCHHHHHHHHHHHHHH
Q 025248 101 AARQWVEK--QGL-LPSSEELPLTESFPGGGGLIAAAKE---ARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 101 ~a~~~a~~--~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~---g~nv~e~f~~l~~~li~ 153 (255)
..++++. ..+ ..|++ +.. +||++ +.++++++..+...+-.
T Consensus 217 -~~~~~~~~~~~~~~~~~~---v~~---------~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 217 -AMEVLTGRVIPLTLGFIG---VIN---------RSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp -CHHHHTTSSSCCTTCEEE---CCC---------CCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred -HHHHHhCCCccCCCCeEE---Eec---------CChhhhccCCCHHHHHHHHHHHHhC
Confidence 1122221 111 24444 222 66666 78888888877766543
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.85 E-value=9.5e-07 Score=81.01 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=60.2
Q ss_pred CcccccccccccCCCCCC------CcccccccCCcEEEEEEECCChhhHHH--HHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPT------GQVRVLVVGDSGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLP 73 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~------gq~r~Yyr~adgvIlVyDvT~~~Sfe~--l~~Wl~ei~~~~~~s~~~~s~~~~~~~ 73 (255)
|||++|.......+.+.. ..+..|+++++++||+++-.+. .+.. ...++.++.. ..
T Consensus 134 lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~~---------------~~ 197 (353)
T 2x2e_A 134 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLANSDALKVAKEVDP---------------QG 197 (353)
T ss_dssp EEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-CGGGCHHHHHHHHHCT---------------TC
T ss_pred EEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-ccchhHHHHHHHHhCc---------------CC
Confidence 688888553322222211 2344688888877776543332 2222 2234433321 23
Q ss_pred CcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCC---CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHH
Q 025248 74 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGL---LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFR 149 (255)
Q Consensus 74 iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl---~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~ 149 (255)
.|+|+|+||+|+.+.. .. +..+.+.... ..|. ++.+ +||+++.|+++.++.+.+
T Consensus 198 ~~~i~V~NK~Dl~~~~--~~--------~~~~~~~~~~~l~~~~~---~v~~---------~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 198 QRTIGVITKLDLMDEG--TD--------ARDVLENKLLPLRRGYI---GVVN---------RSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTEEEEEECGGGSCTT--CC--------CHHHHTTCSSCCTTCEE---ECCC---------CCHHHHHTTCCHHHHHHH
T ss_pred CceEEEeccccccCcc--hh--------HHHHHhCCcccccCCce---EEEe---------CCcccccccccHHHHHHH
Confidence 8999999999997652 11 1122221111 0121 2444 999999998888888766
No 197
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.85 E-value=1.2e-05 Score=70.41 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=46.8
Q ss_pred CcccccccccccCCCCCCCccccccc---------CCcEEEEEEECCChhhHHHH-HHHHHHHHHhCCCCCCCCCCCCCC
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVV---------GDSGVIFVHDLSQRRTKTSL-QKWAVEIATSGTFSAPLASGGPGG 71 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr---------~adgvIlVyDvT~~~Sfe~l-~~Wl~ei~~~~~~s~~~~s~~~~~ 71 (255)
+||++|.+.+.. ....|++ ++|++|+|+|++... |... ..|+..+.... ...
T Consensus 88 liDTpG~~~~~~-------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~----------~~~ 149 (262)
T 3def_A 88 IIDTPGLVEAGY-------VNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTF----------GKE 149 (262)
T ss_dssp EEECCCSEETTE-------ECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHH----------CGG
T ss_pred EEECCCCCCccc-------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHh----------chh
Confidence 688888765431 1223443 899999999998766 5544 47888887642 111
Q ss_pred CCCcEEEEEeCCCCCCC
Q 025248 72 LPVPYVVIGNKADVAAK 88 (255)
Q Consensus 72 ~~iPiiLVGNK~DL~~~ 88 (255)
...|++||+||+|+...
T Consensus 150 ~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 150 IWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp GGGGEEEEEECTTCCCS
T ss_pred hhcCEEEEEeCcccCCC
Confidence 12489999999999755
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.79 E-value=1.1e-05 Score=67.71 Aligned_cols=59 Identities=8% Similarity=-0.050 Sum_probs=44.5
Q ss_pred CcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcC-CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 74 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG-LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 74 iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g-l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
.|++||+||+|+... +.+.. +++.+++++.+ ..++++ +||++|.|++++|+.+.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~--~~~~~----~~~~~~~~~~~~~~~~~~---------------~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADA--VGADI----KKMENDAKRINPDAEVVL---------------LSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHH--HTCCH----HHHHHHHHHHCTTSEEEE---------------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCch--hHHHH----HHHHHHHHHhCCCCeEEE---------------EEecCCCCHHHHHHHHHHHHH
Confidence 456999999999754 33343 66777777653 236788 999999999999999988775
Q ss_pred H
Q 025248 153 R 153 (255)
Q Consensus 153 ~ 153 (255)
+
T Consensus 224 ~ 224 (226)
T 2hf9_A 224 E 224 (226)
T ss_dssp H
T ss_pred h
Confidence 4
No 199
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.79 E-value=6e-06 Score=80.51 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=44.7
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
.+..|++.+|++|+|+|.++...-.. ..++..+. ...+|+++|+||+|+.... . .+
T Consensus 98 ~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---------------~~~ipiivviNK~Dl~~~~--~------~~ 153 (529)
T 2h5e_A 98 DTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---------------LRDTPILTFMNKLDRDIRD--P------ME 153 (529)
T ss_dssp HHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---------------TTTCCEEEEEECTTSCCSC--H------HH
T ss_pred HHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---------------HcCCCEEEEEcCcCCcccc--H------HH
Confidence 46678999999999999998754322 22222222 2348999999999997651 1 13
Q ss_pred HHHHHHHHcCC
Q 025248 101 AARQWVEKQGL 111 (255)
Q Consensus 101 ~a~~~a~~~gl 111 (255)
...++.+.+++
T Consensus 154 ~~~~i~~~l~~ 164 (529)
T 2h5e_A 154 LLDEVENELKI 164 (529)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 45566677765
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.76 E-value=1.4e-05 Score=73.46 Aligned_cols=87 Identities=18% Similarity=0.012 Sum_probs=56.8
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
....+|++|+|+|.+..+.++.+..+ ..++|++||.||+|+... ... .....+
T Consensus 189 ~~~~aD~vl~V~d~~~~~~~~~l~~~--------------------~~~~p~ivVlNK~Dl~~~--~~~-----~~~~~~ 241 (355)
T 3p32_A 189 VANMVDTFVLLTLARTGDQLQGIKKG--------------------VLELADIVVVNKADGEHH--KEA-----RLAARE 241 (355)
T ss_dssp HHTTCSEEEEEEESSTTCTTTTCCTT--------------------SGGGCSEEEEECCCGGGH--HHH-----HHHHHH
T ss_pred HHHhCCEEEEEECCCCCccHHHHHHh--------------------HhhcCCEEEEECCCCcCh--hHH-----HHHHHH
Confidence 35889999999998776554332211 123689999999998643 111 122223
Q ss_pred HHHHc---C-----C-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHH
Q 025248 105 WVEKQ---G-----L-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 105 ~a~~~---g-----l-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+.+.+ + . .+++. +||++|.|+++.++.+.+.+..
T Consensus 242 l~~~l~~~~~~~~~~~~~vi~---------------iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 242 LSAAIRLIYPREALWRPPVLT---------------MSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHSTTCCSCCCCEEE---------------EBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCCCCceEE---------------EEcCCCCCHHHHHHHHHHHHHH
Confidence 33322 1 1 24555 9999999999999999887754
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.72 E-value=1.4e-05 Score=81.82 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=42.2
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA 87 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~ 87 (255)
.+..+++.+|++|+|||.++..+++....|...... .+|+|||+||+|+..
T Consensus 114 ~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~----------------~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 114 EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----------------RIKPVVVINKVDRAL 164 (842)
T ss_dssp HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----------------TCEEEEEEECHHHHH
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc----------------CCCeEEEEECCCcch
Confidence 456789999999999999999999988777643322 289999999999874
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.66 E-value=0.00013 Score=62.48 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=19.1
Q ss_pred eeeecCCCHHHHHHHHHHHHHH
Q 025248 132 AAAKEARYDKEAVMKFFRMLIR 153 (255)
Q Consensus 132 tSAk~g~nv~e~f~~l~~~li~ 153 (255)
+||+++.|+++.++++.+.+-.
T Consensus 236 ~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 236 LSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecCcccHHHHHHHHHHHhcc
Confidence 9999999999999998877643
No 203
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.48 E-value=4e-05 Score=74.97 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=49.9
Q ss_pred CcccccccccccC--CCCC-C-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE
Q 025248 2 FWKERERENKELN--GGPP-T-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV 77 (255)
Q Consensus 2 ~w~~~~~~~~~~~--g~~~-~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii 77 (255)
|||++|....... +... + ..+..|++.+|++|+|+|.++....+....|+..+.. ..+|++
T Consensus 158 lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---------------~~~pvi 222 (550)
T 2qpt_A 158 IIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---------------HEDKIR 222 (550)
T ss_dssp EEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---------------CGGGEE
T ss_pred EEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---------------cCCCEE
Confidence 7888886532111 1110 1 2345688999999999999987777777788777643 237899
Q ss_pred EEEeCCCCCCC
Q 025248 78 VIGNKADVAAK 88 (255)
Q Consensus 78 LVGNK~DL~~~ 88 (255)
||+||+|+...
T Consensus 223 lVlNK~Dl~~~ 233 (550)
T 2qpt_A 223 VVLNKADMVET 233 (550)
T ss_dssp EEEECGGGSCH
T ss_pred EEEECCCccCH
Confidence 99999999764
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.46 E-value=9.4e-05 Score=67.61 Aligned_cols=86 Identities=14% Similarity=-0.009 Sum_probs=50.7
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
..+.+|++|+|+|.+..+.++.+.. ... .+|+++|.||+|+... ..+ .....+
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----------------~~p~ivv~NK~Dl~~~--~~~-----~~~~~~ 218 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQGIKK---GLM-----------------EVADLIVINKDDGDNH--TNV-----AIARHM 218 (341)
T ss_dssp HHTTCSEEEEEECC------CCCCH---HHH-----------------HHCSEEEECCCCTTCH--HHH-----HHHHHH
T ss_pred HHHhCCEEEEEEeCCccHHHHHHHH---hhh-----------------cccCEEEEECCCCCCh--HHH-----HHHHHH
Confidence 4689999999999976544322111 111 1678999999998753 111 111122
Q ss_pred HHH---HcC------CCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHH
Q 025248 105 WVE---KQG------LLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLI 152 (255)
Q Consensus 105 ~a~---~~g------l~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li 152 (255)
+.+ ..+ ..+++. +||++|.|+++.++.+.+.+.
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~---------------iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLT---------------CSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEE---------------CBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCcEEE---------------eeCCCCCCHHHHHHHHHHHHH
Confidence 222 222 123445 999999999999999887664
No 205
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.46 E-value=3e-05 Score=68.87 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=57.4
Q ss_pred CcccccccCCcEEEEEEECCChhhHHH--HHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCcc
Q 025248 20 GQVRVLVVGDSGVIFVHDLSQRRTKTS--LQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGN 97 (255)
Q Consensus 20 gq~r~Yyr~adgvIlVyDvT~~~Sfe~--l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~ 97 (255)
.++...+.++|++|+|.|..++.+..+ +. |+ ..|.++|.||+||.+. ..
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------------------~k~~iivlNK~DL~~~--~~----- 63 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------------------RKETIILLNKVDIADE--KT----- 63 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------------------TSEEEEEEECGGGSCH--HH-----
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------------------CCCcEEEEECccCCCH--HH-----
Confidence 456678899999999999998877653 11 21 2789999999999864 10
Q ss_pred HHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHH
Q 025248 98 LVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFF 148 (255)
Q Consensus 98 l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~ 148 (255)
.+...++.++.|. +. . +||+++.|+++.+..+.
T Consensus 64 -~~~~~~~~~~~g~-~v-~---------------iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 64 -TKKWVEFFKKQGK-RV-I---------------TTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp -HHHHHHHHHHTTC-CE-E---------------ECCTTSCHHHHHHHHCC
T ss_pred -HHHHHHHHHHcCC-eE-E---------------EECCCCcCHHHHHHHHH
Confidence 0222334445565 45 6 99999988877766543
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.26 E-value=0.00018 Score=67.16 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=31.0
Q ss_pred CcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecC
Q 025248 74 VPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEA 137 (255)
Q Consensus 74 iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g 137 (255)
.|+++|+||.|..-... ......+..++++++.+. .++. +||+..
T Consensus 202 KPvi~v~N~~e~d~~~~---~~n~~~~~v~~~a~~~g~-~vv~---------------iSAk~E 246 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDG---RGNPQVEAVRRKALEEGA-EVVV---------------VSARLE 246 (368)
T ss_dssp SCEEEEEECCGGGTTTC---TTCHHHHHHHHHHHHHTC-EEEE---------------ECHHHH
T ss_pred CCeEEeccccHHhhccc---chhhHHHHHHHHHHHcCC-eEEE---------------eechhH
Confidence 69999999998431110 001233778889988886 7888 999874
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.10 E-value=0.00046 Score=63.41 Aligned_cols=91 Identities=11% Similarity=0.008 Sum_probs=49.2
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
+...+|.+++|+|.++....+.+.. .+ ...|.++|.||+|+.... . +.....+
T Consensus 184 l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----------------l~~~~ivVlNK~Dl~~~~--~-----~~~~~~~ 236 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDELQGIKR---GI-----------------IEMADLVAVTKSDGDLIV--P-----ARRIQAE 236 (349)
T ss_dssp HHTTCSEEEEEECCC--------------------------------CCSCSEEEECCCSGGGHH--H-----HHHHHHH
T ss_pred HHhhCCEEEEEEcCCcchhHHHhHH---HH-----------------HhcCCEEEEeeecCCCch--h-----HHHHHHH
Confidence 4678999999999987643322211 11 125789999999986430 0 0012233
Q ss_pred HHHHcCCC-Ce--eecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 105 WVEKQGLL-PS--SEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 105 ~a~~~gl~-~~--~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+.+.+... +. .-..++.. +||++|.|+++.++.+.+.+
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~---------iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIR---------ISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHTTCC-----CCCEEEE---------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEE---------EecCCCCCHHHHHHHHHHHH
Confidence 33322210 00 00112222 99999999999998888765
No 208
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.10 E-value=0.0002 Score=67.02 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=49.0
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeec----------------
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKE---------------- 136 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~---------------- 136 (255)
..|+++|+||.|..-. . ....+..++++++.+. .++. +||+.
T Consensus 199 ~KPvi~v~N~~e~~~~--~----n~~~~~v~~~~~~~~~-~~i~---------------~sA~~E~el~~l~~~e~~~~l 256 (363)
T 1jal_A 199 LKPTMYIANVNEDGFE--N----NPYLDRVREIAAKEGA-VVVP---------------VCAAIESEIAELDDEEKVEFL 256 (363)
T ss_dssp TSCEEEEEECCTTCSS--S----CHHHHHHHHHHHHTTC-EEEE---------------ECHHHHHHGGGSCSSTTHHHH
T ss_pred CCcEEEEEeccccccc--c----cHHHHHHHHHHHHcCC-CEEE---------------echHHHHHHHhcCHHHHHHHH
Confidence 4899999999995421 1 1234778889988886 6776 77664
Q ss_pred ------CCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 025248 137 ------ARYDKEAVMKFFRMLIRRRYFSDEMPAPNPWSI 169 (255)
Q Consensus 137 ------g~nv~e~f~~l~~~li~~~~~s~~~~~p~~~s~ 169 (255)
..++++++...++.|--..+|...+....+|-+
T Consensus 257 ~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i 295 (363)
T 1jal_A 257 QDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTV 295 (363)
T ss_dssp TTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEE
T ss_pred HHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEe
Confidence 256666676666555445667665555555644
No 209
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.03 E-value=0.00079 Score=61.43 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=54.3
Q ss_pred cccccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRR-TKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~-Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
|.-..++|.+|+|.|+.++. +...+.+++..+.. ..+|.+||.||+||.+.. .. . ...+.
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---------------~~~~~vivlnK~DL~~~~--~~-~-~~~~~ 141 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---------------NDIQPIICITKMDLIEDQ--DT-E-DTIQA 141 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---------------TTCEEEEEEECGGGCCCH--HH-H-HHHHH
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---------------CCCCEEEEEECCccCchh--hh-H-HHHHH
Confidence 34467899999999999765 44455566654433 238899999999998651 00 0 00022
Q ss_pred HHHHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHH
Q 025248 102 ARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAV 144 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f 144 (255)
..++-++.|. +.+. +||+++.++++.+
T Consensus 142 ~~~~y~~~g~-~v~~---------------~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 142 YAEDYRNIGY-DVYL---------------TSSKDQDSLADII 168 (307)
T ss_dssp HHHHHHHHTC-CEEE---------------CCHHHHTTCTTTG
T ss_pred HHHHHHhCCC-eEEE---------------EecCCCCCHHHHH
Confidence 2233334565 5666 8888887766543
No 210
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.84 E-value=0.0041 Score=57.97 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=56.6
Q ss_pred cccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHH
Q 025248 21 QVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 21 q~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
+.+....++|.+++|....-.-+...+.+|+...... .++.|||.||+||.+.. . . +
T Consensus 123 ~~~~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---------------~~~~iivlNK~DL~~~~--~--~----~ 179 (358)
T 2rcn_A 123 GVKPIAANIDQIVIVSAILPELSLNIIDRYLVGCETL---------------QVEPLIVLNKIDLLDDE--G--M----D 179 (358)
T ss_dssp -CEEEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---------------TCEEEEEEECGGGCCHH--H--H----H
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---------------CCCEEEEEECccCCCch--h--H----H
Confidence 4455678999999998875444555566777655442 27789999999998651 0 0 1
Q ss_pred HHHHHHH---HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHH
Q 025248 101 AARQWVE---KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVM 145 (255)
Q Consensus 101 ~a~~~a~---~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~ 145 (255)
...+|.. ..|+ +.+. +||+++.++++...
T Consensus 180 ~~~~~~~~y~~~G~-~v~~---------------~Sa~~~~gl~~L~~ 211 (358)
T 2rcn_A 180 FVNEQMDIYRNIGY-RVLM---------------VSSHTQDGLKPLEE 211 (358)
T ss_dssp HHHHHHHHHHTTTC-CEEE---------------CBTTTTBTHHHHHH
T ss_pred HHHHHHHHHHhCCC-cEEE---------------EecCCCcCHHHHHH
Confidence 2334444 3455 5566 99999988876654
No 211
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.85 E-value=0.012 Score=58.32 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=42.2
Q ss_pred cccCCCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 11 KELNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 11 ~~~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
-|.-||.-| +.+..=.+-+||+|+|.|...--.-+...-|..- .++ ++|.|++.||+|....
T Consensus 72 IDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~~---------------~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 72 IDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL-RKM---------------GIPTIFFINKIDQNGI 134 (638)
T ss_dssp EECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HHH---------------TCSCEECCEECCSSSC
T ss_pred EECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HHc---------------CCCeEEEEeccccccC
Confidence 344466655 4444557889999999999876555544455433 332 2889999999997654
No 212
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.85 E-value=0.017 Score=56.38 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=43.7
Q ss_pred ccCCCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 12 ELNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 12 ~~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
|.-||.-| +.+..-++-+||+|+|.|...----+...-|. .+.++ ++|+|++.||+|....
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~---------------~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR---------------ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT---------------TCCEEEEEECTTSCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh---------------CCceEEEEecccchhc
Confidence 33355544 44555678899999999999887776666774 33432 3899999999998654
No 213
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.77 E-value=0.0013 Score=67.15 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=55.1
Q ss_pred ccc-cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 24 VLV-VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 24 ~Yy-r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
.|+ ..+|.+|+|.|.+...+-+....++.++.. ...|+|+|.||+|+.+.. ... .
T Consensus 182 ~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~---------------~g~pvIlVlNKiDlv~~~--~~~-----~-- 237 (772)
T 3zvr_A 182 QFVTKENCLILAVSPANSDLANSDALKIAKEVDP---------------QGQRTIGVITKLDLMDEG--TDA-----R-- 237 (772)
T ss_dssp HHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT---------------TCSSEEEEEECTTSSCTT--CCS-----H--
T ss_pred HHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh---------------cCCCEEEEEeCcccCCcc--hhh-----H--
Confidence 454 478999999999875444333334444432 238999999999998652 111 1
Q ss_pred HHHHHH--cCC-CCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHH
Q 025248 103 RQWVEK--QGL-LPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRM 150 (255)
Q Consensus 103 ~~~a~~--~gl-~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~ 150 (255)
.+.+. ..+ ..|. ++.. +||++|.|+++.++.+.++
T Consensus 238 -~il~~~~~~l~lg~~---~VV~---------iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 238 -DVLENKLLPLRRGYI---GVVN---------RSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp -HHHTTCSSCCSSCEE---ECCC---------CCCEESSSSEEHHHHHHHH
T ss_pred -HHHHHHhhhhhccCC---ceEE---------ecccccccchhHHHHHHHH
Confidence 12221 110 1222 2444 9999999998887777653
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.52 E-value=0.011 Score=53.88 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=48.7
Q ss_pred cccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 25 LVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 25 Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
....+|.+++|+|.+..+..+.+..++ .. ++.++|.||+|+... ...+. ...++
T Consensus 165 v~~~~d~vl~v~d~~~~~~~~~i~~~i---~~-----------------~~~ivvlNK~Dl~~~--~~~s~----~~~~~ 218 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDELQGIKKGI---FE-----------------LADMIAVNKADDGDG--ERRAS----AAASE 218 (337)
T ss_dssp HHTTSSEEEEEECSCC------CCTTH---HH-----------------HCSEEEEECCSTTCC--HHHHH----HHHHH
T ss_pred HHhhCCEEEEEEcCCCcccHHHHHHHH---hc-----------------cccEEEEEchhccCc--hhHHH----HHHHH
Confidence 346899999999987544322222211 11 345666799997543 11111 22334
Q ss_pred HHHHcCCCCee-e--cCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 105 WVEKQGLLPSS-E--ELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 105 ~a~~~gl~~~~-E--e~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+.....++.-. + ..++.. +||+++.|+++.++.+.+.+
T Consensus 219 l~~a~~l~~~~~~~~~~~vl~---------~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 219 YRAALHILTPPSATWTPPVVT---------ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHTTBCCSBTTBCCCEEE---------EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCEEE---------EeCCCCCCHHHHHHHHHHHH
Confidence 44433221100 0 112222 99999999999888887654
No 215
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.87 E-value=0.15 Score=51.01 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=44.8
Q ss_pred ccCCCCCC-CcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 12 ELNGGPPT-GQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 12 ~~~g~~~~-gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
|.-||.-| +.+..-++-+||+|+|.|...--.-+...-|..-... ++|.|++.||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----------------~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----------------GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----------------TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----------------CCCeEEEEccccccCc
Confidence 44476655 5555668889999999999987766666666554444 2899999999997543
No 216
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.65 E-value=3.5 Score=35.79 Aligned_cols=108 Identities=6% Similarity=0.101 Sum_probs=62.4
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEE-EEEeCCCCCCCCCCccCCccHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYV-VIGNKADVAAKEGTRGSSGNLVD 100 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPii-LVGNK~DL~~~~~r~Vs~~~l~e 100 (255)
+...+..+|.+|+|... +..++..+...++.+.... ...+++++ ||.||++- . +
T Consensus 173 ~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~-----------~~~~~~~~gvV~N~~~~--~-----------~ 227 (307)
T 3end_A 173 FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKS-----------KNYKVRLAGCVANRSRA--T-----------D 227 (307)
T ss_dssp GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTT-----------TTCCCEEEEEEEESCSC--C-----------H
T ss_pred HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhh-----------hcCCCceEEEEEecCCc--H-----------H
Confidence 34567889999999864 5677788877777776521 12336655 89999982 1 4
Q ss_pred HHHHHHHHcCCCCeeecCCCCCCCCCC--CCcceeeecC----CCHHHHHHHHHHHHHHHh
Q 025248 101 AARQWVEKQGLLPSSEELPLTESFPGG--GGLIAAAKEA----RYDKEAVMKFFRMLIRRR 155 (255)
Q Consensus 101 ~a~~~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tSAk~g----~nv~e~f~~l~~~li~~~ 155 (255)
..+++.+.+++ +++..||.-+.+... .|..+..... ....++|..++++|+++.
T Consensus 228 ~~~~~~~~~g~-~v~~~Ip~~~~v~~a~~~g~~v~~~~p~~~~s~~~~~~~~la~~l~~~~ 287 (307)
T 3end_A 228 EVDRFCKETNF-RRLAHMPDLDAIRRSRLKKKTLFEMDEDQDVLAARAEYIRLAESLWRGL 287 (307)
T ss_dssp HHHHHHHHHTC-CEEEEECCCHHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCC-CceeeCCccHHHHHHHHcCCCeEeeCCccccHHHHHHHHHHHHHHHhcC
Confidence 46667777775 555544443322211 1111111111 124566777777777653
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=83.38 E-value=0.25 Score=46.51 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=21.4
Q ss_pred CcccccccccccCCCCCCCcccccccCCcEEEEEEECCChhhHHH
Q 025248 2 FWKERERENKELNGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTS 46 (255)
Q Consensus 2 ~w~~~~~~~~~~~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~ 46 (255)
|||.+|....-..|...--+...|++++|++|+|+|+++..++.+
T Consensus 90 lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 90 VVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp EEECCC-----------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred EEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 788888653322222222245578999999999999998766543
No 218
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.17 E-value=6.8 Score=33.06 Aligned_cols=105 Identities=9% Similarity=0.020 Sum_probs=51.9
Q ss_pred ccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHH
Q 025248 24 VLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAAR 103 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~ 103 (255)
..+..||.+|+|... +..+...+...++.+... +.++++.+|.|+++-. ... .+..
T Consensus 162 ~~l~~aD~vivv~~~-~~~s~~~~~~~~~~l~~~-------------~~~~~~~vv~N~~~~~-----~~~-----~~~~ 217 (267)
T 3k9g_A 162 NALLCSDYVIIPMTA-EKWAVESLDLFNFFVRKL-------------NLFLPIFLIITRFKKN-----RTH-----KTLF 217 (267)
T ss_dssp HHHTTCSEEEEEEES-CTTHHHHHHHHHHHHHTT-------------TCCCCEEEEEEEECTT-----CSC-----CHHH
T ss_pred HHHHHCCeEEEEeCC-ChHHHHHHHHHHHHHHHH-------------hccCCEEEEEecccCc-----chH-----HHHH
Confidence 345668999999886 566777777777766653 2236778999999421 112 2233
Q ss_pred HHHHHcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 104 QWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 104 ~~a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
+..++ +. ++.-.+|.-+.+..........-........+.++++.++++
T Consensus 218 ~~l~~-~~-~~~~~Ip~~~~~~~a~~~g~~~~~~~~~~~~~~~i~~~l~~~ 266 (267)
T 3k9g_A 218 EILKT-KD-RFLGTISEREDLNRRIAENNNFDLNKDYIKEYENILEIFLKK 266 (267)
T ss_dssp HHHTT-ST-TEEEEEEC----------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHhc-Cc-ccceecCcHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhh
Confidence 33332 33 555555555433332111111111222345566666666654
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=79.68 E-value=2.3 Score=41.06 Aligned_cols=91 Identities=19% Similarity=0.038 Sum_probs=47.9
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE-EEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi-iLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
.+|.+|||.|.+....-. ..+..+... +|+ +||.||+|..... ..+..+.
T Consensus 213 ~pd~vllVvDa~~g~~~~---~~a~~~~~~----------------~~i~gvVlNK~D~~~~~----------g~~l~~~ 263 (504)
T 2j37_W 213 QPDNIVYVMDASIGQACE---AQAKAFKDK----------------VDVASVIVTKLDGHAKG----------GGALSAV 263 (504)
T ss_dssp CCSEEEEEEETTCCTTHH---HHHHHHHHH----------------HCCCCEEEECTTSCCCC----------THHHHHH
T ss_pred cCceEEEEEeccccccHH---HHHHHHHhh----------------cCceEEEEeCCccccch----------HHHHHHH
Confidence 789999999998754422 222333321 454 7889999987442 1233344
Q ss_pred HHcCCCCeeecCCCCCCC----CCCCCcceeeecCCC-HHHHHHHHHH
Q 025248 107 EKQGLLPSSEELPLTESF----PGGGGLIAAAKEARY-DKEAVMKFFR 149 (255)
Q Consensus 107 ~~~gl~~~~Ee~p~~e~~----~~~~~~~tSAk~g~n-v~e~f~~l~~ 149 (255)
+..++ +... +.+-+.+ +-..-.-+||+.|.+ +++.++++..
T Consensus 264 ~~~g~-PI~f-ig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 264 AATKS-PIIF-IGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp HHHCC-CEEE-EECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred HHhCC-CeEE-eccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 55554 3210 0000000 000112278999987 7666665543
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=76.23 E-value=6.6 Score=36.60 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHHHcC--CCCeeecCCCCCCCCCCCCcceeeec--------------
Q 025248 73 PVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVEKQG--LLPSSEELPLTESFPGGGGLIAAAKE-------------- 136 (255)
Q Consensus 73 ~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~~~g--l~~~~Ee~p~~e~~~~~~~~~tSAk~-------------- 136 (255)
.-|++.+.||.|-.-. +. .+...+...+|+++.+ . ..+. +||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~--~~--~~~~~~~~~~~~~~~~p~~-~~v~---------------~sa~~E~~l~~l~~~~~~~ 283 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFL--RQ--KNKYLPKIKKWIDENSPGD-TLIP---------------MSVAFEERLTNFTEEEAIE 283 (392)
T ss_dssp GSCEEEEEECCHHHHT--TT--CCSSHHHHHHHHHTTSTTC-CEEE---------------ECHHHHHHHTTSCHHHHHH
T ss_pred cCceEEEEEecchhhc--cc--chHHHHHHHHHHHhcCCCC-eEEE---------------EEhHHHHHHhhCCHHHHHH
Confidence 4799999999983211 00 0112366788888765 3 5566 88875
Q ss_pred -------CCCHHHHHHHHHHHHHHHhccCCCC
Q 025248 137 -------ARYDKEAVMKFFRMLIRRRYFSDEM 161 (255)
Q Consensus 137 -------g~nv~e~f~~l~~~li~~~~~s~~~ 161 (255)
..+++.++...++.|--..||...+
T Consensus 284 ~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~ 315 (392)
T 1ni3_A 284 ECKKLNTKSMLPKIIVTGYNALNLINYFTCGE 315 (392)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTEEEEEECCS
T ss_pred HHHHhCCcccHHHHHHHHHHHhCCEEEECCCC
Confidence 5677777777765544345665443
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=74.05 E-value=4.3 Score=32.47 Aligned_cols=110 Identities=11% Similarity=0.019 Sum_probs=60.4
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHH
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAA 102 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a 102 (255)
...+..+|.+|+|...+... ..+...++.+..... ....+++.+|.||+|-... . . .+.
T Consensus 92 ~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~----------~~~~~~~~vv~N~~~~~~~----~-~----~~~ 150 (206)
T 4dzz_A 92 SAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQA----------YSRKVEARFLITRKIEMAT----M-L----NVL 150 (206)
T ss_dssp HHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSC----------GGGCCEEEEEECSBCTTEE----E-E----HHH
T ss_pred HHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHH----------hCCCCcEEEEEeccCCCch----H-H----HHH
Confidence 34567799999999876554 677777777765311 0223677999999994322 1 2 556
Q ss_pred HHHHHHcCCCCee-ecCCCCCCCCCC--CCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 103 RQWVEKQGLLPSS-EELPLTESFPGG--GGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 103 ~~~a~~~gl~~~~-Ee~p~~e~~~~~--~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
.++.++++. +.+ ..+|.-+.|... .|..+.........+.+..++++|+++
T Consensus 151 ~~~l~~~~~-~vl~~~Ip~~~~~~~a~~~g~~v~~~~~s~~~~~~~~la~~i~~~ 204 (206)
T 4dzz_A 151 KESIKDTGV-KAFRTAITQRQVYVKSILDGDSVFESSDGAAKGEIEILTKEIVRI 204 (206)
T ss_dssp HHHHHHHTC-CBCSSCCBCCHHHHHHHHTTCCGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-ceeeccccccHHHHHHHHcCCCcccCCchHHHHHHHHHHHHHHHh
Confidence 677777775 444 233333222111 111111111112445677777777654
No 222
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=66.84 E-value=2.6 Score=39.13 Aligned_cols=38 Identities=8% Similarity=0.015 Sum_probs=28.5
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 025248 132 AAAKEARYDKEAVMKFFRMLIRRRYFSDEMPAPNPWSI 169 (255)
Q Consensus 132 tSAk~g~nv~e~f~~l~~~li~~~~~s~~~~~p~~~s~ 169 (255)
+|+..+.|+++.++.+++.|--.++|...+.-...|..
T Consensus 279 is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~ 316 (376)
T 4a9a_A 279 ISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTD 316 (376)
T ss_dssp CCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSS
T ss_pred hhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCc
Confidence 77788888888888888877667788776666555654
No 223
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=58.62 E-value=4.9 Score=37.30 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=15.9
Q ss_pred ccccCCcEEEEEEECCChh
Q 025248 24 VLVVGDSGVIFVHDLSQRR 42 (255)
Q Consensus 24 ~Yyr~adgvIlVyDvT~~~ 42 (255)
...+.||++++|.|.+++.
T Consensus 145 ~~i~~ad~il~vvD~~~p~ 163 (376)
T 4a9a_A 145 AVARTCNLLFIILDVNKPL 163 (376)
T ss_dssp HHHHHCSEEEEEEETTSHH
T ss_pred HHHHhcCccccccccCccH
Confidence 3568899999999999863
No 224
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=57.50 E-value=39 Score=27.58 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=44.7
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCC-CCCCccCCccHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAA-KEGTRGSSGNLVD 100 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~-~~~r~Vs~~~l~e 100 (255)
+...+..+|.+|++... +..++..+...++.+... ...++.+|.|++|-.. . ..+
T Consensus 84 ~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~--------------~~~~~~vv~N~~~~~~~~---------~~~ 139 (209)
T 3cwq_A 84 LEALADGCDLLVIPSTP-DALALDALMLTIETLQKL--------------GNNRFRILLTIIPPYPSK---------DGD 139 (209)
T ss_dssp HHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHT--------------CSSSEEEEECSBCCTTSC---------HHH
T ss_pred HHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhc--------------cCCCEEEEEEecCCccch---------HHH
Confidence 44567789999999875 467777777777777662 1256889999998643 2 114
Q ss_pred HHHHHHHHcCC
Q 025248 101 AARQWVEKQGL 111 (255)
Q Consensus 101 ~a~~~a~~~gl 111 (255)
+..++.+++|.
T Consensus 140 ~~~~~l~~~g~ 150 (209)
T 3cwq_A 140 EARQLLTTAGL 150 (209)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 45566666664
No 225
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=54.18 E-value=55 Score=26.36 Aligned_cols=104 Identities=11% Similarity=-0.102 Sum_probs=57.2
Q ss_pred ccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHH
Q 025248 22 VRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDA 101 (255)
Q Consensus 22 ~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~ 101 (255)
+...+..+|.+|+|... +..++..+...++.+.... . ..+.+|.||.+- . ..
T Consensus 147 ~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~------------~--~~~~~v~N~~~~--~-----------~~ 198 (254)
T 3kjh_A 147 TRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDLG------------I--KKVRYVINKVRN--I-----------KE 198 (254)
T ss_dssp CHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHHT------------C--SCEEEEEEEECC--H-----------HH
T ss_pred HHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHcC------------C--ccEEEEEeCCCC--h-----------hH
Confidence 34456889999999876 5677777777776555531 1 347888999982 1 33
Q ss_pred HHHHHHHcCCCCeeecCCCCCCCCCC--CCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 102 ARQWVEKQGLLPSSEELPLTESFPGG--GGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 102 a~~~a~~~gl~~~~Ee~p~~e~~~~~--~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
..++.+.++-..+...+|.-+.+... .|........ ...+.|..++++|.+.
T Consensus 199 ~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~~~~~~~-~~~~~~~~la~~l~~~ 252 (254)
T 3kjh_A 199 EKLIKKHLPEDKILGIIPYNELFIELSLKGEEIWQSTN-PAFVNLHDIYQKLRLE 252 (254)
T ss_dssp HHHHHHHSCGGGEEEEEECCHHHHSCSSSSCCTTSTTS-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccccccCcHHHHHHHhCCCccccCCc-HHHHHHHHHHHHHHhh
Confidence 44555555522333323332222111 1211111111 3457788888877664
No 226
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=43.46 E-value=47 Score=28.69 Aligned_cols=49 Identities=10% Similarity=0.065 Sum_probs=30.1
Q ss_pred cccccCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 23 RVLVVGDSGVIFVHDLSQR-RTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~-~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
|+-..-|++++++.|-+.. -+-.. ...+..+.. . +++|+|.||+|....
T Consensus 106 rv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~--------------~--~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 106 RIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK--------------V--VNIIPVIAKADTMTL 155 (270)
T ss_dssp SCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT--------------T--SEEEEEETTGGGSCH
T ss_pred hhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh--------------c--CcEEEEEeccccCCH
Confidence 4455567888988885422 11111 234444433 2 789999999997754
No 227
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=37.99 E-value=1.1e+02 Score=24.76 Aligned_cols=51 Identities=10% Similarity=-0.091 Sum_probs=36.8
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCC
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVA 86 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~ 86 (255)
...+..+|.+|+|... +..++..+...++.+.... .....+.+|.||+|-.
T Consensus 135 ~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~------------~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 135 VWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFE------------KPISRIEIILNRADTN 185 (245)
T ss_dssp HHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCS------------SCCSCEEEEEESTTSC
T ss_pred HHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhC------------CCccceEEEEecCCCC
Confidence 4457789999999875 5778888888888776531 1124578889999854
No 228
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=37.09 E-value=2.2e+02 Score=25.07 Aligned_cols=81 Identities=9% Similarity=0.146 Sum_probs=46.5
Q ss_pred CCCCCCCcccccccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE-EEEEeCCCCCCCCCCc
Q 025248 14 NGGPPTGQVRVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGNKADVAAKEGTR 92 (255)
Q Consensus 14 ~g~~~~gq~r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi-iLVGNK~DL~~~~~r~ 92 (255)
-+...++....-+..||.||+|-.. +.-+++.+...++.|.... ...++++ -||.|+++..
T Consensus 172 ~~~~~~~~~~~al~aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~-----------~~~~~~l~GiI~n~~~~~------ 233 (314)
T 3fwy_A 172 LGDVVCGGFAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKS-----------KNYKVRLAGCVANRSRAT------ 233 (314)
T ss_dssp CCSSCCGGGGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTT-----------TTCCCEEEEEEEESCSCC------
T ss_pred CCcchhhhhHhHHhhCCeEEEEeCC-cHHHHHHHHHHHHHHHHHh-----------ccCCCceEEEEEcCCCch------
Confidence 3455555544456789999888653 4566666666665555421 1222343 2566766532
Q ss_pred cCCccHHHHHHHHHHHcCCCCeeecCCC
Q 025248 93 GSSGNLVDAARQWVEKQGLLPSSEELPL 120 (255)
Q Consensus 93 Vs~~~l~e~a~~~a~~~gl~~~~Ee~p~ 120 (255)
.+..+++++++. +++..+|+
T Consensus 234 -------~~v~~~a~~~~~-~~lg~IP~ 253 (314)
T 3fwy_A 234 -------DEVDRFCKETNF-RRLAHMPD 253 (314)
T ss_dssp -------HHHHHHHHHHTC-CEEEEECC
T ss_pred -------hHHHHHHHHhCC-eEEEEecC
Confidence 456678888875 55553443
No 229
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=35.17 E-value=1.3e+02 Score=21.79 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=23.6
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCC
Q 025248 29 DSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 84 (255)
Q Consensus 29 adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~D 84 (255)
.|.+|+-+++.+.+.++ .+..+++. +....+|+|++....|
T Consensus 53 ~dlii~d~~l~~~~g~~----~~~~l~~~-----------~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 53 PHLIITEANMPKISGMD----LFNSLKKN-----------PQTASIPVIALSGRAT 93 (147)
T ss_dssp CSEEEEESCCSSSCHHH----HHHHHHTS-----------TTTTTSCEEEEESSCC
T ss_pred CCEEEEcCCCCCCCHHH----HHHHHHcC-----------cccCCCCEEEEeCCCC
Confidence 46666666666655554 34444441 1134589999877654
No 230
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=34.99 E-value=1.2e+02 Score=21.69 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=24.4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 84 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~D 84 (255)
..|.+|+-+++.+...++-+ ..+++. ...+|+|++....|
T Consensus 49 ~~dlvi~d~~l~~~~g~~~~----~~l~~~-------------~~~~~ii~ls~~~~ 88 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMDIL----REIKKI-------------TPHMAVIILTGHGD 88 (143)
T ss_dssp TCCEEEEESCCSSSCHHHHH----HHHHHH-------------CTTCEEEEEECTTC
T ss_pred CCCEEEEeCCCCCCcHHHHH----HHHHHh-------------CCCCeEEEEECCCC
Confidence 45777777777766665533 334443 23488998876554
No 231
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.21 E-value=1.1e+02 Score=21.83 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=9.1
Q ss_pred CCcEEEEEeCCC
Q 025248 73 PVPYVVIGNKAD 84 (255)
Q Consensus 73 ~iPiiLVGNK~D 84 (255)
.+|+|++....|
T Consensus 80 ~~~ii~ls~~~~ 91 (140)
T 2qr3_A 80 DLPVVLFTAYAD 91 (140)
T ss_dssp TCCEEEEEEGGG
T ss_pred CCCEEEEECCCC
Confidence 489999887655
No 232
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=28.64 E-value=2.4e+02 Score=23.06 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=55.7
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcE-EEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 27 VGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPY-VVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPi-iLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
.-+|.+|+|... +..++..+...++.+..... ..++++ -+|.|+.+-.. .. +....+
T Consensus 139 ~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~-----------~~~~~~~gvv~N~~~~~~------~~----~~~~~l 196 (269)
T 1cp2_A 139 GKAQEIYIVASG-EMMALYAANNISKGIQKYAK-----------SGGVRLGGIICNSRKVAN------EY----ELLDAF 196 (269)
T ss_dssp TSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBT-----------TBBCEEEEEEEECCSSSC------CH----HHHHHH
T ss_pred hhCCEEEEeecC-chhhHHHHHHHHHHHHHHHh-----------cCCCcEEEEEeecCCcch------hH----HHHHHH
Confidence 368999988875 56677777766666665310 112454 68889986321 11 445566
Q ss_pred HHHcCCCCeeecCCCCCCCCCCCCcceeeecCC---------CHHHHHHHHHHHHHHH
Q 025248 106 VEKQGLLPSSEELPLTESFPGGGGLIAAAKEAR---------YDKEAVMKFFRMLIRR 154 (255)
Q Consensus 106 a~~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~---------nv~e~f~~l~~~li~~ 154 (255)
.+.++. +.+..||.-+.+. -+...|. ...+.+..++++|+++
T Consensus 197 ~~~~~~-~v~~~Ip~~~~~~------~a~~~g~~v~~~~~~s~~~~~~~~l~~~l~~~ 247 (269)
T 1cp2_A 197 AKELGS-QLIHFVPRSPMVT------KAEINKQTVIEYDPTCEQAEEYRELARKVDAN 247 (269)
T ss_dssp HHHHTC-CEEEEECCCHHHH------HHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHC
T ss_pred HHHcCC-cccccCCCCcHHH------HHHHcCCceEEECCCChHHHHHHHHHHHHHhc
Confidence 677775 4444444433221 1222222 2345677777777765
No 233
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=28.16 E-value=97 Score=29.21 Aligned_cols=43 Identities=23% Similarity=0.107 Sum_probs=26.7
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAK 88 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~ 88 (255)
.+|.++||.|.+....-.+ ....+.... -+..||.||+|....
T Consensus 212 ~pd~vlLVvDA~~gq~a~~---~a~~f~~~~---------------~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQQAYN---QALAFKEAT---------------PIGSIIVTKLDGSAK 254 (443)
T ss_dssp CCSEEEEEEEGGGGGGHHH---HHHHHHHSC---------------TTEEEEEECCSSCSS
T ss_pred cCceEEEEEeCCCchhHHH---HHHHHHhhC---------------CCeEEEEECCCCccc
Confidence 5688999999876543222 233344310 235688899998654
No 234
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=27.58 E-value=51 Score=27.02 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=15.0
Q ss_pred cCCcEEEEEEECCChhhH
Q 025248 27 VGDSGVIFVHDLSQRRTK 44 (255)
Q Consensus 27 r~adgvIlVyDvT~~~Sf 44 (255)
.++|.+|++=|+++....
T Consensus 31 ~~~D~vi~~GDl~~~~~~ 48 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEAL 48 (260)
T ss_dssp HCCSEEEEESCCCCCHHH
T ss_pred cCCCEEEECCCCCCccCc
Confidence 478999999999987654
No 235
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.43 E-value=2.1e+02 Score=21.89 Aligned_cols=81 Identities=7% Similarity=-0.006 Sum_probs=47.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWVE 107 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a~ 107 (255)
++|++.+..-. ..+...+...++++++.+ ..++++++-|.-.- ..+ .. .+..+.++
T Consensus 54 ~~d~v~lS~~~--~~~~~~~~~~i~~l~~~g------------~~~i~v~vGG~~~~-~~~-----~~----~~~~~~~~ 109 (137)
T 1ccw_A 54 KADAILVSSLY--GQGEIDCKGLRQKCDEAG------------LEGILLYVGGNIVV-GKQ-----HW----PDVEKRFK 109 (137)
T ss_dssp TCSEEEEEECS--STHHHHHTTHHHHHHHTT------------CTTCEEEEEESCSS-SSC-----CH----HHHHHHHH
T ss_pred CCCEEEEEecC--cCcHHHHHHHHHHHHhcC------------CCCCEEEEECCCcC-chH-----hh----hhhHHHHH
Confidence 56666665544 566677888888888741 12366655553211 111 01 33456788
Q ss_pred HcCCCCeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHH
Q 025248 108 KQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRML 151 (255)
Q Consensus 108 ~~gl~~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~l 151 (255)
+.|+..++. .+.+..+.+.++.+.+
T Consensus 110 ~~G~d~~~~-------------------~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 110 DMGYDRVYA-------------------PGTPPEVGIADLKKDL 134 (137)
T ss_dssp HTTCSEECC-------------------TTCCHHHHHHHHHHHH
T ss_pred HCCCCEEEC-------------------CCCCHHHHHHHHHHHh
Confidence 899754544 6667777777776654
No 236
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=27.37 E-value=96 Score=27.14 Aligned_cols=61 Identities=21% Similarity=0.103 Sum_probs=35.7
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc-EEEEEeCCCCCCCCCCccCCccHHHHHHH
Q 025248 26 VVGDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVP-YVVIGNKADVAAKEGTRGSSGNLVDAARQ 104 (255)
Q Consensus 26 yr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iP-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~ 104 (255)
...+|.+|+|.|.+.. .+....+..+... ++ ..+|.||+|..... ..+..
T Consensus 210 ~~~~d~vllVvda~~g---~~~~~~~~~~~~~----------------~~i~gvVlnk~D~~~~~----------g~~~~ 260 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIG---QKAYDLASKFNQA----------------SKIGTIIITKMDGTAKG----------GGALS 260 (297)
T ss_dssp HHCCSEEEEEEEGGGG---GGHHHHHHHHHHT----------------CTTEEEEEECGGGCTTH----------HHHHH
T ss_pred HhcCCEEEEEeeCCch---HHHHHHHHHHHhh----------------CCCCEEEEeCCCCCcch----------HHHHH
Confidence 3478999999998743 2222223333331 44 67888999975431 33455
Q ss_pred HHHHcCCCCeee
Q 025248 105 WVEKQGLLPSSE 116 (255)
Q Consensus 105 ~a~~~gl~~~~E 116 (255)
++...++ +...
T Consensus 261 ~~~~~~~-pi~~ 271 (297)
T 1j8m_F 261 AVAATGA-TIKF 271 (297)
T ss_dssp HHHTTTC-CEEE
T ss_pred HHHHHCc-CEEE
Confidence 6666665 4443
No 237
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=25.16 E-value=65 Score=23.48 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=13.3
Q ss_pred EEEEEECCChhhHHHHHHH
Q 025248 32 VIFVHDLSQRRTKTSLQKW 50 (255)
Q Consensus 32 vIlVyDvT~~~Sfe~l~~W 50 (255)
+|++||+++......+.+.
T Consensus 6 ~lV~YDI~~~kr~~kv~k~ 24 (90)
T 1zpw_X 6 YAVAYDIPDDTRRVKLANL 24 (90)
T ss_dssp EEEEEECCCHHHHHHHHHH
T ss_pred EEEEEeCCChHHHHHHHHH
Confidence 7999999987555444443
No 238
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=23.76 E-value=80 Score=29.25 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=28.6
Q ss_pred cccccCCcEEEEEEECCChhhHHHHHHHHHHHHHh
Q 025248 23 RVLVVGDSGVIFVHDLSQRRTKTSLQKWAVEIATS 57 (255)
Q Consensus 23 r~Yyr~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~ 57 (255)
..|+..+.|.++|+|.++. +++....|+..+.+.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 4577788999999999998 788888998888764
No 239
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=22.16 E-value=84 Score=23.08 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=15.1
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHh
Q 025248 31 GVIFVHDLSQRRTKTSLQKWAVEIATS 57 (255)
Q Consensus 31 gvIlVyDvT~~~Sfe~l~~Wl~ei~~~ 57 (255)
-+|++||+++...... ..+.+..+
T Consensus 5 ~vlV~YDI~~~krr~k---v~k~l~~y 28 (91)
T 3exc_X 5 KLLVVYDVSDDSKRNK---LANNLKKL 28 (91)
T ss_dssp EEEEEEECCSHHHHHH---HHHHHHHT
T ss_pred EEEEEEeCCCchHHHH---HHHHHHHh
Confidence 4799999998754433 34444444
No 240
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.93 E-value=3.1e+02 Score=23.89 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCCCCccCCccHHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKEGTRGSSGNLVDAARQWV 106 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~a 106 (255)
|+|+++++--.-.+-+-+.+..|+..|.+. .++|++|- | .....+..++. +...+++
T Consensus 99 Gadavlv~~P~y~~~~~~~l~~~f~~va~a--------------~~lPiilY-n---~P~~tg~~l~~----~~~~~La 155 (300)
T 3eb2_A 99 GADGILAILEAYFPLKDAQIESYFRAIADA--------------VEIPVVIY-T---NPQFQRSDLTL----DVIARLA 155 (300)
T ss_dssp TCSEEEEEECCSSCCCHHHHHHHHHHHHHH--------------CSSCEEEE-E---CTTTCSSCCCH----HHHHHHH
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHH--------------CCCCEEEE-E---CccccCCCCCH----HHHHHHH
Confidence 799999987666667888999999999884 23888775 2 22222234454 5566665
No 241
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.64 E-value=2.1e+02 Score=19.95 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=23.5
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCC
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKAD 84 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~D 84 (255)
..|.+|+-+++.+...++- +.++++.. ....+|+|++....|
T Consensus 55 ~~dlvi~d~~~~~~~g~~~----~~~l~~~~-----------~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 55 RPDLILLXLNLPKKDGREV----LAEIKSDP-----------TLKRIPVVVLSTSIN 96 (140)
T ss_dssp CCSEEEECSSCSSSCHHHH----HHHHHHST-----------TGGGSCEEEEESCCC
T ss_pred CCcEEEEecCCCcccHHHH----HHHHHcCc-----------ccccccEEEEecCCc
Confidence 3566666666666555543 33444420 013489999877655
No 242
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=20.69 E-value=3.2e+02 Score=21.71 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=57.5
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhCCCCCCCCCCCCCCCCCcEEEEEeCCCCCCCC-CCccCCccHHHHHHHHHHHc
Q 025248 32 VIFVHDLSQRRTKTSLQ-KWAVEIATSGTFSAPLASGGPGGLPVPYVVIGNKADVAAKE-GTRGSSGNLVDAARQWVEKQ 109 (255)
Q Consensus 32 vIlVyDvT~~~Sfe~l~-~Wl~ei~~~~~~s~~~~s~~~~~~~iPiiLVGNK~DL~~~~-~r~Vs~~~l~e~a~~~a~~~ 109 (255)
..++|.-.|.+.|+... ..+.+.++. .+ .+-+.|-||...+.-.. ..+|. .++..++..++.++
T Consensus 4 m~i~f~gddlea~ekalkemirqarkf-----------ag--tvtytl~gn~l~i~itgvpeqvr-kelakeaerl~~ef 69 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKF-----------AG--TVTYTLSGNRLVIVITGVPEQVR-KELAKEAERLKAEF 69 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHT-----------TC--EEEEEEETTEEEEEEESCCHHHH-HHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhh-----------cc--eEEEEEeCCEEEEEEeCCcHHHH-HHHHHHHHHHHHhc
Confidence 46788888888888654 455554442 11 25566666655443110 01121 24456777888888
Q ss_pred CCC-CeeecCCCCCCCCCCCCcceeeecCCCHHHHHHHHHHHHHHH
Q 025248 110 GLL-PSSEELPLTESFPGGGGLIAAAKEARYDKEAVMKFFRMLIRR 154 (255)
Q Consensus 110 gl~-~~~Ee~p~~e~~~~~~~~~tSAk~g~nv~e~f~~l~~~li~~ 154 (255)
++. .|.- . -..+|.-.-.-.|..+ |+|++.++++++.
T Consensus 70 ni~v~y~i----m---gsgsgvm~i~f~gddl-ea~ekalkemirq 107 (170)
T 4hhu_A 70 NINVQYQI----M---GSGSGVMVIVFEGDDL-EALEKALKEMIRQ 107 (170)
T ss_dssp TCEEEEEE----E---CTTCCEEEEEEECSCH-HHHHHHHHHHHHH
T ss_pred ceEEEEEE----E---eCCceEEEEEEecCcH-HHHHHHHHHHHHH
Confidence 762 1111 1 1224555556667665 7888888888874
No 243
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=20.44 E-value=2.7e+02 Score=25.71 Aligned_cols=55 Identities=22% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC-c-EEEEEeCCCCCCCCCCccCCccHHHHHHHH
Q 025248 28 GDSGVIFVHDLSQRRTKTSLQKWAVEIATSGTFSAPLASGGPGGLPV-P-YVVIGNKADVAAKEGTRGSSGNLVDAARQW 105 (255)
Q Consensus 28 ~adgvIlVyDvT~~~Sfe~l~~Wl~ei~~~~~~s~~~~s~~~~~~~i-P-iiLVGNK~DL~~~~~r~Vs~~~l~e~a~~~ 105 (255)
.+|.++||.|.+.... ....+..+.. . + + ..||.||+|..... ..+..+
T Consensus 210 ~~d~vllVvda~~g~~---~~~~~~~~~~--------------~--~~~i~gvVlnK~D~~~~~----------g~~l~~ 260 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQQ---AGIQAKAFKE--------------A--VGEIGSIIVTKLDGSAKG----------GGALSA 260 (432)
T ss_dssp CCSEEEEEEEGGGGGG---HHHHHHHHHT--------------T--SCSCEEEEEECSSSCSTT----------HHHHHH
T ss_pred cCcceeEEeeccccHH---HHHHHHHHhh--------------c--ccCCeEEEEeCCCCccch----------HHHHHH
Confidence 6889999999876532 2222222221 1 4 5 78899999976431 234456
Q ss_pred HHHcCC
Q 025248 106 VEKQGL 111 (255)
Q Consensus 106 a~~~gl 111 (255)
....+.
T Consensus 261 ~~~~~~ 266 (432)
T 2v3c_C 261 VAETKA 266 (432)
T ss_dssp HHHSSC
T ss_pred HHHHCC
Confidence 666665
No 244
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.31 E-value=1.4e+02 Score=21.39 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=9.1
Q ss_pred CCCcEEEEEeCCC
Q 025248 72 LPVPYVVIGNKAD 84 (255)
Q Consensus 72 ~~iPiiLVGNK~D 84 (255)
..+|+|++....|
T Consensus 80 ~~~~ii~ls~~~~ 92 (140)
T 3lua_A 80 ANTPVIIATKSDN 92 (140)
T ss_dssp TTCCEEEEESCCC
T ss_pred CCCCEEEEeCCCC
Confidence 3488998876554
Done!