Your job contains 1 sequence.
>025249
MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP
KMGGEVSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPSAVGGRGGAGG
SFSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYP
PAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAP
YDRPSRGDRPSFDRY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025249
(255 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2179939 - symbol:AtRZ-1c "AtRZ-1c" species:370... 313 2.3e-52 2
TAIR|locus:2036520 - symbol:AtRZ-1b "AtRZ-1b" species:370... 296 1.8e-50 2
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 232 3.8e-31 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 162 4.1e-16 2
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 145 5.7e-15 2
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 130 4.6e-12 2
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 126 1.1e-11 2
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 121 2.7e-11 2
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 124 2.9e-11 2
RGD|1306751 - symbol:Rbmxrtl "RNA binding motif protein, ... 122 5.1e-11 2
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 120 5.5e-11 2
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein... 120 5.5e-11 2
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein... 120 5.5e-11 2
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein... 120 5.5e-11 2
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein... 120 5.5e-11 2
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ... 120 5.6e-11 2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 106 7.6e-11 2
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 116 2.2e-10 2
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 116 2.2e-10 2
RGD|1585845 - symbol:Rbmxl1 "RNA binding motif protein, X... 117 3.2e-10 2
UNIPROTKB|Q6K9C3 - symbol:RSZ23 "Serine/arginine-rich spl... 88 1.3e-09 3
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 110 1.5e-09 2
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif... 101 7.5e-09 2
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 92 3.2e-08 2
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 97 5.9e-08 2
UNIPROTKB|F8VX11 - symbol:EIF4B "Eukaryotic translation i... 122 9.8e-08 2
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 92 1.0e-07 2
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin... 108 1.3e-07 2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 88 1.5e-07 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 104 1.8e-07 2
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 119 1.8e-07 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 119 1.8e-07 1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 91 2.0e-07 2
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 91 2.1e-07 2
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 91 2.4e-07 2
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 87 2.8e-07 2
UNIPROTKB|E2RPP3 - symbol:E2RPP3 "Uncharacterized protein... 104 3.1e-07 2
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 88 3.9e-07 2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 87 4.8e-07 2
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 107 7.1e-07 2
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 101 1.2e-06 2
RGD|1306479 - symbol:Eif4b "eukaryotic translation initia... 122 1.3e-06 2
UNIPROTKB|P23588 - symbol:EIF4B "Eukaryotic translation i... 121 1.8e-06 2
MGI|MGI:95304 - symbol:Eif4b "eukaryotic translation init... 121 1.8e-06 2
UNIPROTKB|E2RKS4 - symbol:EIF4B "Uncharacterized protein"... 121 1.8e-06 2
UNIPROTKB|E7EX17 - symbol:EIF4B "Eukaryotic translation i... 121 1.8e-06 2
UNIPROTKB|F1MYS7 - symbol:EIF4B "Uncharacterized protein"... 120 2.7e-06 2
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 83 2.8e-06 2
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 108 3.1e-06 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 108 3.1e-06 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 108 3.1e-06 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 108 3.1e-06 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 88 4.3e-06 2
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 83 4.6e-06 2
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 83 5.3e-06 2
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 83 5.3e-06 2
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 106 5.4e-06 1
WB|WBGene00011730 - symbol:drr-2 species:6239 "Caenorhabd... 119 5.9e-06 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 83 6.1e-06 2
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 83 6.7e-06 2
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot... 84 6.8e-06 2
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 83 7.1e-06 2
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 105 7.1e-06 1
DICTYBASE|DDB_G0291966 - symbol:DDB_G0291966 "CCHC-type z... 71 7.8e-06 3
TAIR|locus:2147625 - symbol:AT5G19960 species:3702 "Arabi... 107 7.9e-06 2
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 83 8.4e-06 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 83 8.4e-06 2
UNIPROTKB|B3KRG5 - symbol:RBMX "RNA-binding motif protein... 120 9.1e-06 1
UNIPROTKB|H3BUY5 - symbol:RBMX "RNA-binding motif protein... 120 9.8e-06 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 85 1.1e-05 2
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 83 1.2e-05 2
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 83 1.2e-05 2
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 87 1.6e-05 2
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 102 1.6e-05 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 102 1.6e-05 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 102 1.6e-05 1
DICTYBASE|DDB_G0284245 - symbol:DDB_G0284245 "CCHC-type z... 73 1.7e-05 3
ASPGD|ASPL0000005578 - symbol:AN6676 species:162425 "Emer... 94 1.8e-05 2
UNIPROTKB|I3LH22 - symbol:LOC100514264 "Uncharacterized p... 84 2.7e-05 2
UNIPROTKB|B4DS13 - symbol:EIF4B "cDNA FLJ59405, highly si... 121 2.8e-05 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 93 3.1e-05 2
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein... 83 4.4e-05 2
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 83 4.7e-05 2
WB|WBGene00004705 - symbol:rsp-8 species:6239 "Caenorhabd... 98 6.0e-05 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 119 6.1e-05 1
DICTYBASE|DDB_G0280393 - symbol:DDB_G0280393 "CCHC-type z... 73 6.5e-05 3
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 85 6.7e-05 2
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 82 7.4e-05 2
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 77 7.7e-05 2
RGD|1309595 - symbol:Taf15 "TAF15 RNA polymerase II, TATA... 93 7.8e-05 2
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 83 8.8e-05 2
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 86 9.9e-05 2
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 81 0.00010 2
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 81 0.00010 2
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 95 0.00011 1
TAIR|locus:2049339 - symbol:AT2G21690 species:3702 "Arabi... 95 0.00011 1
TAIR|locus:2121219 - symbol:GRP2 "AT4G38680" species:3702... 86 0.00011 3
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 81 0.00011 2
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 83 0.00011 2
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 83 0.00011 2
WARNING: Descriptions of 55 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 313 (115.2 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 61/108 (56%), Positives = 75/108 (69%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSD- 68
D +IMLERD+GR RGFGFIT+ADRRAMD++IREMHGR+FGDRVISVN+A+PK+G + +
Sbjct: 35 DCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGRDDGES 94
Query: 69 HXXXXXXXXXXXXXXXXADRPGG-------QDDCFKCGRPGHWARDCP 109
H + GG +D+CFKCGR GHWARDCP
Sbjct: 95 HGSRGGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCP 142
Score = 247 (92.0 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 61/109 (55%), Positives = 69/109 (63%)
Query: 165 DSK--YGSRDRYVSDRYPPAGDRLAG-DRYG-GSDRYPVNGYGKERGYERDVGARAGSDR 220
DS+ Y RDRY SDRY DR AG DRY GSDRYP Y K R +ERD+ AGSDR
Sbjct: 202 DSREAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYPPGSYDKARSFERDIAPSAGSDR 261
Query: 221 YA---SGGPAR---DDGRGYRSRA-APYDRPSR----GDRPS---FDRY 255
Y +GGP R ++GRG+RSRA APY+RPSR G PS FDRY
Sbjct: 262 YGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGGGAYPSSSTFDRY 310
Score = 105 (42.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 31/91 (34%), Positives = 42/91 (46%)
Query: 167 KYGSRDRYVSDRYPPAGDRLAGDRYGGSDRY-PVNGYGKERGYERDVGARAGSDRYASGG 225
+Y R+RY+ DRY A A DR+ + Y P + Y +R Y AG DRY+ G
Sbjct: 177 RYVDRERYIDDRYDGAARYGARDRFDSREAYIPRDRYASDR-YAAPADRFAGGDRYSRGS 235
Query: 226 PARDDGRGYRSRAAPYD-RPSRGDRPSFDRY 255
G ++R+ D PS G DRY
Sbjct: 236 DRYPPGSYDKARSFERDIAPSAGS----DRY 262
Score = 86 (35.3 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 34/90 (37%), Positives = 41/90 (45%)
Query: 167 KYGSRDRYVSDRYPPAGDRLAGD-RYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 225
+Y RDRYV DR DR G RYG DR+ +E RD R SDRYA+
Sbjct: 171 RYADRDRYV-DRERYIDDRYDGAARYGARDRFD----SREAYIPRD---RYASDRYAAPA 222
Query: 226 PARDDGRGYRSRAAPYDRPSRGDRP-SFDR 254
G Y SR + P D+ SF+R
Sbjct: 223 DRFAGGDRY-SRGSDRYPPGSYDKARSFER 251
Score = 62 (26.9 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 30/72 (41%), Positives = 34/72 (47%)
Query: 189 DRYGGSDRY-PVNGYGKERGYERDVGARAGS-DRYASGGPARDDGRGYRSR-AAPYDRPS 245
DRY DRY Y +R Y D AR G+ DR+ S R R AAP DR +
Sbjct: 170 DRYADRDRYVDRERYIDDR-Y--DGAARYGARDRFDSREAYIPRDRYASDRYAAPADRFA 226
Query: 246 RGDRPS--FDRY 255
GDR S DRY
Sbjct: 227 GGDRYSRGSDRY 238
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 296 (109.3 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 56/100 (56%), Positives = 68/100 (68%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
+ +IM+ RD+GRPRGFGFIT+ DRR DDAI+ MHGRE G++VISVNKA+PK+GGE D
Sbjct: 40 ECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQ 99
Query: 70 XXXXXXXXXXXXXXXXADRPGGQDDCFKCGRPGHWARDCP 109
G +D+CFKC RPGHWARDCP
Sbjct: 100 LKKGGGYSSRGK--------GTEDECFKCRRPGHWARDCP 131
Score = 246 (91.7 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 51/92 (55%), Positives = 60/92 (65%)
Query: 167 KYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGY-GKERGYERDVGARAGSDRYASGG 225
KY RD Y +RY P GDR DRYG + + N Y G+ER Y+RD AR SDRY G
Sbjct: 201 KYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMG 260
Query: 226 PARDDGRGYRSRAAPYDRPSR-GDRPS-FDRY 255
P RD+GR YRSR PYDRPSR G RPS ++R+
Sbjct: 261 PIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292
Score = 84 (34.6 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 31/86 (36%), Positives = 37/86 (43%)
Query: 171 RDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDD 230
R+R+ R P A GD G DRY +ER ER+ DRY G RD
Sbjct: 137 RERF---RVPLAMRSRIGDIDGHRDRYGDRDLEREREREREF------DRYMDGRRDRDG 187
Query: 231 GR-GYRSRAAPYDRPSRGDRPSFDRY 255
GR YR R D+ D F+RY
Sbjct: 188 GRYSYRDRFDSGDKYEPRDHYPFERY 213
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 232 (86.7 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 44/103 (42%), Positives = 62/103 (60%)
Query: 7 HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66
H + K++L++ SGR RGFGFIT+ +++AMD+AI M+G + R I+V+KAQP GG
Sbjct: 32 HLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAG 91
Query: 67 SDHXXXXXXXXXXXXXXXXADRPGGQDDCFKCGRPGHWARDCP 109
D+ G DCFKCG+PGH+AR+CP
Sbjct: 92 RDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECP 134
Score = 126 (49.4 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 40/92 (43%), Positives = 47/92 (51%)
Query: 163 SKDSKYGSRD-RYVS--DRYPPAGDRLAG--DRYGGSD-RYPV-NGYGKERGYERDVGAR 215
SKD +YG++D RY + DRY DR + DRY D RY +G G G +R G R
Sbjct: 154 SKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRS-GER 212
Query: 216 AGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 247
AG R GG G G R APYDRP G
Sbjct: 213 AGG-RSRDGGSRGAPG-GERHSRAPYDRPRAG 242
Score = 99 (39.9 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 32/85 (37%), Positives = 42/85 (49%)
Query: 163 SKDSKYGSR-DRYVS--DRYPPAGDRLAG--DRYGGSDRYPVNGYGKERGYERDVG-ARA 216
+KD +YG++ DRY + DRY DR + DRYG D + YG +R ER G +R
Sbjct: 161 AKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSRDGGG-SRYGPDRSGERAGGRSRD 219
Query: 217 GSDRYASGGPARDDGRGYRSRAAPY 241
G R A GG R RA +
Sbjct: 220 GGSRGAPGGERHSRAPYDRPRAGGF 244
Score = 86 (35.3 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 39/100 (39%), Positives = 46/100 (46%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAG--DRYGGSD-RYPVNGYGKERGYERD--VGAR-A 216
SKD +Y S+D DRY DR DRYG D RY +R +D G+R
Sbjct: 147 SKDDRYSSKD----DRYGAKDDRYGAKEDRYGAKDDRYSSKD---DRYSSKDDRYGSRDG 199
Query: 217 GSDRYASGGPARDDGR-GYRSRAAPYDRPSRGDRPSFDRY 255
G RY GP R R G RSR D SRG P +R+
Sbjct: 200 GGSRY---GPDRSGERAGGRSR----DGGSRG-APGGERH 231
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 162 (62.1 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
D KI+ +R+SGR RGFGF+T+ D +AM DAI EM+G+E RVI+VN+AQ + G
Sbjct: 34 DSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSG 88
Score = 52 (23.4 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 192 GGSDRYPVNGYGKERGYER---DVGARAGSDRYASGGPARDDGRGY 234
GG Y G G GYER G+ G GG R +G GY
Sbjct: 112 GGGGGYSGGGGG---GYERRSGGYGSGGGGGGRGYGGGGRREGGGY 154
Score = 43 (20.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 183 GDRLAGDRYGGSDR----YPVNGYGKERGY----ERDVGARAGSD--RYASGG 225
G +G GG +R Y G G RGY R+ G G D Y GG
Sbjct: 114 GGGYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGG 166
Score = 39 (18.8 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 203 GKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 241
G GY G G GG + G GY R+ Y
Sbjct: 96 GSGGGYRS--GGGGGYSGGGGGGYSGGGGGGYERRSGGY 132
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 145 (56.1 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
D KI+ +R++GR RGFGF+T+ D +AM DAI M+G++ R I+VN+AQ + G H
Sbjct: 36 DSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGH 95
Score = 58 (25.5 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 21/60 (35%), Positives = 22/60 (36%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 247
G R GG Y G G GY G Y GG R+ G GY Y SRG
Sbjct: 94 GHRGGGGGGYRSGGGG---GYS------GGGGSYGGGGGRREGGGGYSGGGGGYS--SRG 142
Score = 45 (20.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 18/53 (33%), Positives = 20/53 (37%)
Query: 188 GDRYGGSD--RYPVNGY-GKERGYER---DVGARAGSDRYASGGPARDDGRGY 234
G YGG R GY G GY G+ G R GG +G GY
Sbjct: 115 GGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGY 167
Score = 36 (17.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 183 GDRLAGDRYGGSDRYPVNGYGKERG 207
G R G YGG + GYG G
Sbjct: 151 GRREGGGGYGGGEG---GGYGGSGG 172
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 130 (50.8 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D KI+ +R++GR RGFGF+T+A AM AI M+G++ R I+VN+AQ +
Sbjct: 34 DSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
Score = 45 (20.9 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 17/50 (34%), Positives = 19/50 (38%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSR 237
G +GG GYG +R G G Y GG G GY SR
Sbjct: 90 GGGFGGGG----GGYGGQRREGGGGGYGGGGGGY--GGGRSGGGGGYGSR 133
Score = 43 (20.2 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 17/47 (36%), Positives = 17/47 (36%)
Query: 179 YPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 225
Y G G R GG Y G GY G GS R SGG
Sbjct: 112 YGGGGGGYGGGRSGGGGGYGSRD-GGGGGYGGGGGGYGGS-RGGSGG 156
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 126 (49.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
D +++L+R++GR RGFGF+T+ A AI+ + GR+ RV+ VN A + G
Sbjct: 68 DTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSG 122
Score = 79 (32.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 24/68 (35%), Positives = 28/68 (41%)
Query: 174 YVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYA--SGGPARDDG 231
Y +DR +G G YGG GYG GY G GS Y +GG + G
Sbjct: 115 YANDR--TSGGGFGGGGYGGGG----GGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSG 168
Query: 232 RGYRSRAA 239
GY AA
Sbjct: 169 GGYGGNAA 176
Score = 50 (22.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 17/54 (31%), Positives = 19/54 (35%)
Query: 194 SDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 247
+DR G+G GY G GS Y G GY A Y S G
Sbjct: 117 NDRTSGGGFGGG-GYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGG 169
Score = 47 (21.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 166 SKYGSRDRYVSDRYPPAGD-RLAGDRYGGSDRYPVNGY----GKERGYERDVGARAGSDR 220
S YGS + Y S AGD + G G S ++ + G + G E G+ S+
Sbjct: 232 SGYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGDNTQFTAGGQFGGEDQFGSMEKSET 291
Query: 221 YASGGPARDDGRGYRSRA 238
GP + RA
Sbjct: 292 KMEDGPIGGEFEDVAKRA 309
Score = 42 (19.8 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGP 226
GD Y GS +GYG Y G AG ++ G P
Sbjct: 226 GD-YNGS-----SGYGSANTYGSSNGGFAGDSQFG-GSP 257
Score = 42 (19.8 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 183 GDRLAGDRYGGSDRYPVNGYGKER-GYERDVGARAGSDRYASGGPARDDG 231
G AG YGGS GYG + G+ G S + S G +G
Sbjct: 172 GGNAAGG-YGGSG---AGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEG 217
Score = 39 (18.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 DSKYGSRDRYVSDRYPPAGDRL---AGDRYGGSDRY 197
DS++G S ++ GD AG ++GG D++
Sbjct: 250 DSQFGGSPVGNSSQF--GGDNTQFTAGGQFGGEDQF 283
Score = 39 (18.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 187 AGDRYGGSDRYPVNG--YGKERGYERD-VGARAGSDRYASGGPARDDGRGY 234
AG YG S + +G YG+ VG GS Y S G+
Sbjct: 197 AGGGYGSSGGFGSSGNTYGEGSSASAGAVGDYNGSSGYGSANTYGSSNGGF 247
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 121 (47.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 44/98 (44%), Positives = 49/98 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGSDR--YPVNGYGKERGYERDVGAR 215
+KDS Y SRD Y S R Y PP D D S R YP GYG GY RD R
Sbjct: 213 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRD---R 267
Query: 216 AGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 268 DYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 301
Score = 87 (35.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 70 (29.7 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 281 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 336
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 337 ---DRVGRQERGLPPSM-ERGYPPPRDSY 361
Score = 66 (28.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 313 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 367
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 368 APRGGGRGGSRSDRGGGRSR 387
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 124 (48.7 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 47/105 (44%), Positives = 51/105 (48%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GYG GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYGDRDGYGRD--- 269
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDR---PSRGDRPSFDRY 255
R SD + SGG RD Y SR+AP R PS G +D Y
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDY 313
Score = 82 (33.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ ++ +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 71 (30.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 31/81 (38%), Positives = 38/81 (46%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAG-DRYGGSDR-YPVNGYGKERGY--ERDV--GARA 216
S+D GSRD Y S R D + DR G +R P + ERGY RD +
Sbjct: 316 SRDGYGGSRDSYSSSR----SDLYSSCDRVGRQERGLPPS---VERGYPSSRDSYSSSSR 368
Query: 217 GSDRYASGGPARDDGRGYRSR 237
G+ R A G +R D G RSR
Sbjct: 369 GAPRGAGPGGSRSDRGGGRSR 389
Score = 38 (18.4 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 17 RDSGRPRGFG 26
R G PRGFG
Sbjct: 101 RSRGPPRGFG 110
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 122 (48.0 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 44/98 (44%), Positives = 49/98 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGSDR--YPVNGYGKERGYERDVGAR 215
+KDS Y SRD Y S R Y PP D D S R YP GYG GY RD R
Sbjct: 213 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRD---R 267
Query: 216 AGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 268 EYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 301
Score = 83 (34.3 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ D R+M+G+ + I V +A
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84
Score = 70 (29.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 281 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 336
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 337 ---DRVGRQERGLPPSM-ERGYPPPRDSY 361
Score = 66 (28.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 313 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 367
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 368 APRGGGRGGSRSDRGGGRSR 387
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 120 (47.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 215 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 268
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 269 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 303
Score = 86 (35.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 70 (29.7 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 283 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 338
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 339 ---DRVGRQERGLPPSM-ERGYPPPRDSY 363
Score = 66 (28.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 315 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 369
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 370 APRGGGRGGSRSDRGGGRSR 389
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 120 (47.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 86 (35.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 70 (29.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 30/80 (37%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G DR P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQDRGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
Score = 70 (29.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQDRGLPPSM-ERGYPPPRDSY 364
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 120 (47.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 86 (35.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 70 (29.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 66 (28.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 120 (47.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 86 (35.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 70 (29.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 66 (28.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 120 (47.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 86 (35.3 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 70 (29.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 66 (28.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 120 (47.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 217 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 270
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 271 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 305
Score = 86 (35.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 37 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 85
Score = 70 (29.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 285 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 340
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 341 ---DRVGRQERGLPPSM-ERGYPPPRDSY 365
Score = 66 (28.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 317 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 371
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 372 APRGGGRGGSRSDRGGGRSR 391
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 106 (42.4 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 39/96 (40%), Positives = 42/96 (43%)
Query: 168 YGSRDRYVSDRYPPAGDR-LAGDR-YGGSDRYPVNGYGK-ERGY---ERDVGARAGSDRY 221
YG Y SDR GDR GDR YGG DR GYG ER Y +R G G
Sbjct: 132 YGGDRSYGSDR-SFGGDRSYGGDRSYGGGDR----GYGGGERSYGGGDRSYGGGGGGYSN 186
Query: 222 ASGGPARDDGRGYRSRA--APYDRPSRGDRPSFDRY 255
SGG + G GYR YDR R +D Y
Sbjct: 187 RSGGYS--SGGGYRDNRNQGGYDRSGGSYRDGYDSY 220
Score = 95 (38.5 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 13 IMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
++ +R++ R RGFGF+T+ + DA+ M+G++ R+I V++A K GG
Sbjct: 54 VIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVDEAG-KSGG 104
Score = 66 (28.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 166 SKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 225
S+ G R + R G GDR GSDR +G +R Y D + G DR GG
Sbjct: 113 SRGGGRGFFRGSR-GRGGGGYGGDRSYGSDR----SFGGDRSYGGD-RSYGGGDR-GYGG 165
Query: 226 PARDDGRGYRS 236
R G G RS
Sbjct: 166 GERSYGGGDRS 176
Score = 45 (20.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 203 GKERGYERDVGARAGSDRYASGGPARDDGRGYRS-RAAPYDRPSRGDR 249
G+ G+ G+R G + G R G GY R+ DR GDR
Sbjct: 104 GRSGGFRG--GSRGGGRGFFRGSRGRGGG-GYGGDRSYGSDRSFGGDR 148
Score = 43 (20.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 18/43 (41%), Positives = 19/43 (44%)
Query: 213 GARAGSDRYASGGPARDDGRGYRSRAAP-Y--DRPSRGDRPSF 252
G R+G R S G R RG R R Y DR DR SF
Sbjct: 103 GGRSGGFRGGSRGGGRGFFRGSRGRGGGGYGGDRSYGSDR-SF 144
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 116 (45.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 44/99 (44%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY R+
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRE--- 269
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 86 (35.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 69 (29.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/89 (34%), Positives = 37/89 (41%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYTSSRSDLYSSGR- 339
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 68 (29.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 30/80 (37%), Positives = 36/80 (45%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYTSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D RG RSR
Sbjct: 371 APRGGGRGGSRSD-RGGRSR 389
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 116 (45.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 44/99 (44%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SR+ Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRE-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 86 (35.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 70 (29.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 226
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 66 (28.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 217
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 218 SDRYASGGPARDDGRGYRSR 237
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 117 (46.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 43/98 (43%), Positives = 49/98 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGSDR--YPVNGYGKERGYERDVGAR 215
+KDS Y SRD Y+S R Y PP D D S R YP GYG GY RD R
Sbjct: 213 TKDS-YSSRD-YLSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRD---R 267
Query: 216 AGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
SD + SGG RD Y S +AP P+RG PS+
Sbjct: 268 EYSD-HPSGGSYRDSYESYGNSCSAP---PTRGPPPSY 301
Score = 83 (34.3 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ D R+M+G+ + I V +A
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 88 (36.0 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 87 DRPGGQD-DCFKCGRPGHWARDC 108
DR GG D C++CG PGH+AR+C
Sbjct: 79 DRSGGSDMKCYECGEPGHFAREC 101
Score = 79 (32.9 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 21 RPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVS 67
+P GF FI + DRR +DAIR++ G+ G RV KA G + S
Sbjct: 36 KPPGFAFIDFDDRRDAEDAIRDLDGKN-GWRVELSTKAGSGRGRDRS 81
Score = 53 (23.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 31/80 (38%), Positives = 35/80 (43%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRY---PVNGYGKERGYERDVG-ARAGSDRYA-SG 224
SR R S RY R RY S Y P + K R Y R ARA S Y+ S
Sbjct: 117 SRSRSRSPRYR-GRSRSRSPRYRRSPSYGRSPRDRSPKRRSYSRSPPPARARS--YSRSP 173
Query: 225 GPARDDGRGY-RSRAAPYDR 243
P R+ R Y RS A P +R
Sbjct: 174 PPPRE--RSYSRSPAQPANR 191
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 110 (43.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 43/103 (41%), Positives = 49/103 (47%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KD Y SRD Y S R Y PP D D YG S D YP GY +RD G
Sbjct: 204 TKDG-YSSRD-YPSSRDTRDYAPPPRDYAYRD-YGHSSSRDEYPSRGYSLSSYSDRD-GY 259
Query: 215 RAGSDR----YASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
G DR + SGG RD Y SR+AP P+RG PS+
Sbjct: 260 GGGRDRDYSDHPSGGSYRDSYESYGNSRSAP---PARGPPPSY 299
Score = 86 (35.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 75 (31.5 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 33/89 (37%), Positives = 41/89 (46%)
Query: 170 SRDRYVSDRY-PPAGDRLAGDRYGGSDRYPVNGYGKER-GY-ERDVGARAGSDRYASGGP 226
S + Y + R PPA R YGGS RY + YG R GY R+ + + SD Y+SG
Sbjct: 279 SYESYGNSRSAPPA--RGPPPSYGGSSRY--DDYGSTRDGYGSRESYSSSRSDVYSSGR- 333
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 334 ---DRVGRQDRGLPPSM-ERGYPPPRDSY 358
Score = 67 (28.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 28/75 (37%), Positives = 33/75 (44%)
Query: 168 YGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAGSDRYA 222
YGSR+ Y S R DR G DR P + ERGY RD + G+ R
Sbjct: 315 YGSRESYSSSRSDVYSS--GRDRVGRQDRGLPPS---MERGYPPPRDSYSSSSRGAPRGG 369
Query: 223 SGGPARDDGRGYRSR 237
G +R D G RSR
Sbjct: 370 GRGGSRSDRGGGRSR 384
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 101 (40.6 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 41/103 (39%), Positives = 46/103 (44%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLA-G--DR-YGGSDRYPVNGYGKER------GYERDV 212
S+D YGS R SDR G R G DR GS R P +GYG R G
Sbjct: 234 SRDD-YGSGSRGYSDRDGYGGGREPRGYIDRPSAGSYRDPYDGYGNSRSAPPSRGPPPSY 292
Query: 213 GARAGSDRYASGGPARDDGRGYR-----SRAAPYDRPSRGDRP 250
GS RY G + DG G R SR+ PY +RGDRP
Sbjct: 293 SGSGGSSRYDDYGSSSRDGYGSRDSYPSSRSDPYST-NRGDRP 334
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 36/96 (37%), Positives = 43/96 (44%)
Query: 164 KDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYERDVGA--RAGSDR 220
+D YGS+D Y S Y + D + D YG R YP Y D G+ R SDR
Sbjct: 192 RDDHYGSKDSYSSRDYMSSRD--SRD-YGPPPRDYPYREYSGHSSSRDDYGSGSRGYSDR 248
Query: 221 YASGGPARDDGRGYRSRAAPYDRPSRGD-RPSFDRY 255
GG R+ RGY DRPS G R +D Y
Sbjct: 249 DGYGG-GREP-RGY------IDRPSAGSYRDPYDGY 276
Score = 91 (37.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ +M +R++ + RGF F+TY + DA REM+G+ + I V +A
Sbjct: 35 SEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREMNGKPLDGKPIKVEQA 84
Score = 91 (37.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 43/105 (40%), Positives = 47/105 (44%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGD----RLAG-----DRYGGSDRYPVNGYGKERGY 208
SKDS Y SRD Y+S R Y PP D +G D YG R GY GY
Sbjct: 198 SKDS-YSSRD-YMSSRDSRDYGPPPRDYPYREYSGHSSSRDDYGSGSR----GYSDRDGY 251
Query: 209 ERDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R DR S G RD GY SR+AP PSRG PS+
Sbjct: 252 GGGREPRGYIDR-PSAGSYRDPYDGYGNSRSAP---PSRGPPPSY 292
Score = 88 (36.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 31/77 (40%), Positives = 38/77 (49%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRY 221
S+D YGSRD Y S R P GDR G +R P ERGY R+ + + G+ R
Sbjct: 308 SRDG-YGSRDSYPSSRSDPYSTN-RGDRPGRQERGPPP---LERGYPREYSSSSRGAPRG 362
Query: 222 ASGGPARDD-GRGYRSR 237
G R D G G R+R
Sbjct: 363 GGRGGRRPDRGMG-RNR 378
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 92 (37.4 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGFIT+ + DA+R M+G R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
Score = 78 (32.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 185 RLAGDRYGGSDRYPVN--GYGKERGYERDV-GARAGSDRYASGGPARDD 230
R GD+ GS RY GYG G RD G++ G DRY SGG RD+
Sbjct: 103 RGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYDRY-SGGNYRDN 150
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 97 (39.2 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGFIT+ D DA+R M+G R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMNGESLDGRQIRVDHA 82
Score = 70 (29.7 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 25/56 (44%), Positives = 28/56 (50%)
Query: 185 RLAGDRYGGSDRYPVN--GYGKERGY------ERDVGARA--GSDRYASGGPARDD 230
R GD+ GS RY GYG GY RD G R+ G DRY SGG RD+
Sbjct: 105 RGGGDQGYGSGRYDSRPGGYGYGYGYGYGYGRSRDYGGRSQGGYDRY-SGGNYRDN 159
Score = 68 (29.0 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 29/82 (35%), Positives = 36/82 (43%)
Query: 178 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYAS--GGPARDDGRGY 234
R AG G R GG+ +G+ R Y R G + GS RY S GG G GY
Sbjct: 78 RVDHAGKSARGTR-GGA----FGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGYGY 132
Query: 235 R-SRAAPYDRPSRGDRPSFDRY 255
R+ Y S+G +DRY
Sbjct: 133 GYGRSRDYGGRSQG---GYDRY 151
>UNIPROTKB|F8VX11 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021182
ProteinModelPortal:F8VX11 SMR:F8VX11 Ensembl:ENST00000549481
ArrayExpress:F8VX11 Bgee:F8VX11 Uniprot:F8VX11
Length = 360
Score = 122 (48.0 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 43/97 (44%), Positives = 48/97 (49%)
Query: 163 SKDSKYGSRDRYVSDRYPPA-------GDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR 215
++D +Y RDRY SDRY G R DRYGG DRY G R Y+R +R
Sbjct: 174 AQDKEY--RDRYDSDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRG---SRDYDRGYDSR 228
Query: 216 AGSDRYASG-GPARDDG-RGYRSRAAP-YDRPSRGDR 249
GS R A G G RDD RG R YDR R DR
Sbjct: 229 IGSGRRAFGSGYRRDDDYRGGGDRYEDRYDR--RDDR 263
Score = 94 (38.1 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 34/85 (40%), Positives = 37/85 (43%)
Query: 167 KYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGP 226
+YG RDRY DR DR R G R +G GY RD R G DRY
Sbjct: 206 RYGGRDRY-DDRGSRDYDRGYDSRIGSGRR----AFGS--GYRRDDDYRGGGDRYEDRYD 258
Query: 227 ARDDGRGYRSRAAPYDRPS--RGDR 249
RDD R + SR Y R R DR
Sbjct: 259 RRDD-RSWSSRD-DYSRDDYRRDDR 281
Score = 50 (22.7 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 13 IMLERDSGRP---RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSD 68
+ L R+ P +GFG+ + D ++ A+ ++ G+R I V+ A E D
Sbjct: 124 VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQDKEYRD 181
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 92 (37.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGFIT+ + DA+R M+G R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
Score = 74 (31.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 23/50 (46%), Positives = 26/50 (52%)
Query: 185 RLAGDRYGGSDRYPVN--GYGKERGYERDVGARA--GSDRYASGGPARDD 230
R GD+ GS RY GYG G RD R+ G DRY SGG RD+
Sbjct: 105 RGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGRSQGGYDRY-SGGNYRDN 153
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
D ++L+R+SG RGFGF+TY ++A++ M +E R+I V+ A GG
Sbjct: 64 DAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPADSGGGG 118
Score = 42 (19.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 201 GYGKERGYERDVGARAGSDRYASGGPARDD--GRGY 234
G G G+ R G G YA GG R G GY
Sbjct: 116 GGGGGGGFARRGGYGGGRGGYARGGFGRGGFGGGGY 151
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 88 (36.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGFIT+ + D +R M+G R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82
Score = 78 (32.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 185 RLAGDRYGGSDRYPVN--GYGKERGYERDV-GARAGSDRYASGGPARDD 230
R GD+ GS RY GYG G RD G++ G DRY SGG RD+
Sbjct: 105 RGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYDRY-SGGNYRDN 152
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 104 (41.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK-MGGEVS 67
D IM +R +G+PRGFGFIT+AD +D I + H + + + + PK GG S
Sbjct: 47 DSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTH--VINGKQVEIKRTIPKGAGGNQS 103
Score = 80 (33.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+++ + ++ R RGFGF+ + +D+ + + + + D + + KA+PK
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Score = 73 (30.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 24/70 (34%), Positives = 26/70 (37%)
Query: 176 SDRYPPAGDRLAGDRYGGSDRYPVNGY--GKERGYERDVGARAGSDRYASGGPARDDGRG 233
S R+ P G G+ YG GY G GY G G Y SGGP G
Sbjct: 281 SSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGG-AYESGGP----GGS 335
Query: 234 YRSRAAPYDR 243
Y PY R
Sbjct: 336 YEGAGGPYGR 345
Score = 61 (26.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 25/68 (36%), Positives = 30/68 (44%)
Query: 179 YPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGS--DRYASG--GPARDDGR-G 233
+PP R G G + RY GYG RG VG G + Y G G R++ G
Sbjct: 227 HPPGPIRSHG---GPASRY-AGGYGYGRG---SVGPEFGGGYNNYGGGSLGGYRNEPPLG 279
Query: 234 YRSRAAPY 241
Y SR PY
Sbjct: 280 YSSRFGPY 287
Score = 52 (23.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 27/75 (36%), Positives = 31/75 (41%)
Query: 168 YGS--RDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVG---AR-AGSDRY 221
YGS R R +D Y G G YGG D GYG G R G +R AG Y
Sbjct: 198 YGSHPRGRSSNDSYASYG----GP-YGGFD----GGYGHPPGPIRSHGGPASRYAGGYGY 248
Query: 222 ASGGPARDDGRGYRS 236
G + G GY +
Sbjct: 249 GRGSVGPEFGGGYNN 263
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D K++++R++GR RGFGF+ + D A AI EM G+E R I VN A +
Sbjct: 63 DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
N+++I+ +R++GRPRGF FI +A+ + A+ +M+G EF R + VN A
Sbjct: 32 NNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 91 (37.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 36/80 (45%), Positives = 38/80 (47%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 218 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 271
Query: 215 RAGSDRYASGGPARDDGRGY 234
R SD + SGG RD Y
Sbjct: 272 RDYSD-HPSGGSYRDSYESY 290
Score = 86 (35.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 38 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 86
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 91 (37.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 36/80 (45%), Positives = 38/80 (47%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 215 RAGSDRYASGGPARDDGRGY 234
R SD + SGG RD Y
Sbjct: 270 RDYSD-HPSGGSYRDSYESY 288
Score = 86 (35.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 91 (37.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 36/80 (45%), Positives = 38/80 (47%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 215 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 268
Query: 215 RAGSDRYASGGPARDDGRGY 234
R SD + SGG RD Y
Sbjct: 269 RDYSD-HPSGGSYRDSYESY 287
Score = 86 (35.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 87 (35.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGFIT+ + +A+R M+G R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHA 82
Score = 78 (32.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 30/77 (38%), Positives = 37/77 (48%)
Query: 163 SKDSKYGSRDRYVSDR-YPPAGDRLAGDRYGGSDRYPVN------GYGKERGYERDVGAR 215
++ S+ G+ Y R YP G GD+ GS RY GYG G RD G R
Sbjct: 86 ARGSRGGAFGGYERGRGYPRGG----GDQGYGSGRYDNRPGAYGFGYGYGYGRSRDYGGR 141
Query: 216 A--GSDRYASGGPARDD 230
+ G DRY SGG RD+
Sbjct: 142 SQGGYDRY-SGGNYRDN 157
Score = 74 (31.1 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 29/80 (36%), Positives = 36/80 (45%)
Query: 178 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGYR- 235
R AG G R GG+ GY + RGY R G + GS RY + A G GY
Sbjct: 78 RVDHAGKSARGSR-GGA----FGGYERGRGYPRGGGDQGYGSGRYDNRPGAYGFGYGYGY 132
Query: 236 SRAAPYDRPSRGDRPSFDRY 255
R+ Y S+G +DRY
Sbjct: 133 GRSRDYGGRSQG---GYDRY 149
>UNIPROTKB|E2RPP3 [details] [associations]
symbol:E2RPP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
EMBL:AAEX03014231 Ensembl:ENSCAFT00000038706 Uniprot:E2RPP3
Length = 367
Score = 104 (41.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 42/98 (42%), Positives = 47/98 (47%)
Query: 163 SKDSKYGSRD----RYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGAR 215
+KDS Y SRD R D PP D D YG S D Y GY GY D R
Sbjct: 194 TKDS-YSSRDYPDSRDTRDYAPPPRDYTYRD-YGHSRSHDVYLSRGYSVRDGYGPD---R 248
Query: 216 AGSDRYASGGPARDDGRGYR-SRAAPYDRPSRGDRPSF 252
SD +ASGG RD Y SR+AP P+RG PS+
Sbjct: 249 DYSD-HASGGSYRDSYESYGISRSAP---PTRGPPPSY 282
Score = 71 (30.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
K M +R++ + +GF F+ + D R+ +G+ + I V +A K E S H
Sbjct: 30 KYMKDRETNKSKGFAFVIFESPADAKDTARDTNGKSLDGKAIKVEQAT-KPSFESSRH 86
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 88 (36.0 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
++ + R++ R RGFGF+T+ + DA+ M+G+ R I V++A GG
Sbjct: 33 NVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSVDGRTIRVDEAGKGGGG 87
Score = 79 (32.9 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 188 GDRYGGSDR-YPVNGYGKERGYERDVGARAGSDRYASGGPA---RDDGRGYRSRAAPY 241
G YGG DR Y YG G G ++G Y+SGG RD G GY R++ Y
Sbjct: 122 GGGYGGGDRSYGDRSYGGGGG-----GYKSGGGGYSSGGGGGYNRDRGSGYGDRSSSY 174
Score = 58 (25.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 21/47 (44%), Positives = 23/47 (48%)
Query: 183 GDRLAGDR-YGGSDR-YPVNGYGKERG----YERDVGARAGSDRYAS 223
GDR GDR YGG Y G G G Y RD G+ G DR +S
Sbjct: 128 GDRSYGDRSYGGGGGGYKSGGGGYSSGGGGGYNRDRGSGYG-DRSSS 173
Score = 52 (23.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 19/58 (32%), Positives = 23/58 (39%)
Query: 168 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERG--Y-ERDVGARAGSDRYA 222
YG DR DR G GG GY ++RG Y +R + G D YA
Sbjct: 125 YGGGDRSYGDRSYGGGGGGYKSGGGGYSSGGGGGYNRDRGSGYGDRSSSYKDGYDSYA 182
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 87 (35.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGFIT+ + +A+R M+G R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHA 82
Score = 75 (31.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 185 RLAGDRYGGSDRYPVN--GYGKERGY--ERDVGARA-GS-DRYASGGPARDD 230
R GD+ G+ RY GYG GY RD G+R+ GS DRY SGG RD+
Sbjct: 103 RGGGDQGYGNGRYDSRPGGYGYGYGYGRSRDYGSRSQGSYDRY-SGGNYRDN 153
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 107 (42.7 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D ++ML++D+G+ RGFGF+TY A+D + +F DR I + +A+P+
Sbjct: 271 DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKF-IDFKDRKIEIKRAEPR 321
Score = 87 (35.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
DLKIM + +GR RGFGF+++ ++D+ ++ H + G +VI +A P+
Sbjct: 187 DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD-G-KVIDPKRAIPR 236
Score = 68 (29.0 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 201 GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRP 250
GY ++RG +RD R + SGG R +GRG R Y+R + G P
Sbjct: 486 GYNRDRG-DRDRNDRDRDYNHRSGGNHRRNGRGGRGG---YNRRNNGYHP 531
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 101 (40.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH 44
D IM +R +G+PRGFGF+TYAD +D I++ H
Sbjct: 70 DSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNH 104
Score = 93 (37.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVS 67
+IM + +GR RGFGF+TY +D + + + E + + KA+PK V+
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVT 215
Score = 71 (30.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 23/56 (41%), Positives = 25/56 (44%)
Query: 188 GDRYGGSDRYPVNGYGKERG-YERDVGARAGSDRYASGGPARDDGRGYRSRAAPYD 242
GD YGGS P GYG G Y G+ +G Y GG G GYR YD
Sbjct: 324 GDMYGGSYGEPGGGYGGPSGSYGGGYGS-SGIGGYG-GGMGGAGGGGYRGGGG-YD 376
Score = 63 (27.2 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 19/58 (32%), Positives = 20/58 (34%)
Query: 188 GDRYGGSDRYPVNGYGK--ERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDR 243
G Y G Y + G G GY G G Y GG G G R PY R
Sbjct: 366 GGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYGGGGGRGGYGGGGSGRYHPYGR 423
Score = 58 (25.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 181 PAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASG-GPARDD-GRGYRSR 237
P G +G YGG GYG GY + G G Y G GP R + GY R
Sbjct: 247 PGGPYKSGGGYGGGRS---GGYG---GYGGEFGGYGGGG-YGGGVGPYRGEPALGYSGR 298
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 22/67 (32%), Positives = 23/67 (34%)
Query: 188 GDRYGGS-DRY---PVNGY-----GKERGYERDVGARAGSDRYASGGPARDDGRGYRSRA 238
G YGG Y P GY G GY R + G Y GGP G Y
Sbjct: 277 GGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYG-GGPGDMYGGSYGEPG 335
Query: 239 APYDRPS 245
Y PS
Sbjct: 336 GGYGGPS 342
>RGD|1306479 [details] [associations]
symbol:Eif4b "eukaryotic translation initiation factor 4B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306479 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 EMBL:CH474035 CTD:1975
eggNOG:NOG238591 HOGENOM:HOG000006553 HOVERGEN:HBG006129 KO:K03258
GeneTree:ENSGT00530000063406 OrthoDB:EOG4SQWWX EMBL:BC085933
IPI:IPI00373045 RefSeq:NP_001008325.1 UniGene:Rn.95954 SMR:Q5RKG9
STRING:Q5RKG9 Ensembl:ENSRNOT00000014033 GeneID:300253
KEGG:rno:300253 UCSC:RGD:1306479 InParanoid:Q5RKG9 NextBio:646645
Genevestigator:Q5RKG9 Uniprot:Q5RKG9
Length = 611
Score = 122 (48.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 43/97 (44%), Positives = 46/97 (47%)
Query: 165 DSKYGS--RDRYVSDRYPPA-------GDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR 215
D +G RDRY SDRY G R DRYGG DRY G R Y+R +R
Sbjct: 217 DDSFGDKYRDRYESDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRG---SRDYDRGYDSR 273
Query: 216 AGSDRYASG-GPARDDG-RGYRSRAAP-YDRPSRGDR 249
GS R A G G RDD RG R YDR R DR
Sbjct: 274 IGSGRRAFGSGYRRDDDYRGGGDRYEDRYDR--RDDR 308
Score = 102 (41.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 31/67 (46%), Positives = 35/67 (52%)
Query: 177 DRYPPA-GDRLAGDRYGG---SDRYPVNGY--GKERGYERDVGARAGSDRYASGGPARDD 230
D YPP GD GD+Y SDRY +GY G G RD+ G DRY G +RD
Sbjct: 209 DDYPPRRGDDSFGDKYRDRYESDRYR-DGYRDGYRDGPRRDMDRYGGRDRYDDRG-SRDY 266
Query: 231 GRGYRSR 237
RGY SR
Sbjct: 267 DRGYDSR 273
Score = 46 (21.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 13 IMLERDSGRP---RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ L R+ P +GFG+ + D ++ A+ ++ G+R I V+ A
Sbjct: 124 VRLPREPSNPDRLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 171
>UNIPROTKB|P23588 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_111102 GO:GO:0008286
GO:GO:0000166 GO:GO:0006446 GO:GO:0016281 Gene3D:3.30.70.330
EMBL:CH471054 GO:GO:0003743 GO:GO:0000289 Reactome:REACT_1762
EMBL:X55733 EMBL:AB076839 EMBL:CR456958 EMBL:AK222528 EMBL:BC073139
EMBL:BC073154 EMBL:BC098437 IPI:IPI00012079 PIR:S12566
RefSeq:NP_001408.2 UniGene:Hs.648394 UniGene:Hs.702041 PDB:1WI8
PDB:2J76 PDBsum:1WI8 PDBsum:2J76 ProteinModelPortal:P23588
SMR:P23588 IntAct:P23588 MINT:MINT-210187 STRING:P23588
PhosphoSite:P23588 DMDM:205371761 PaxDb:P23588 PRIDE:P23588
Ensembl:ENST00000262056 GeneID:1975 KEGG:hsa:1975 UCSC:uc001sbh.4
CTD:1975 GeneCards:GC12P053400 HGNC:HGNC:3285 HPA:CAB019440
MIM:603928 neXtProt:NX_P23588 PharmGKB:PA27713 eggNOG:NOG238591
HOGENOM:HOG000006553 HOVERGEN:HBG006129 InParanoid:P23588 KO:K03258
PhylomeDB:P23588 EvolutionaryTrace:P23588 GenomeRNAi:1975
NextBio:7995 PMAP-CutDB:P23588 ArrayExpress:P23588 Bgee:P23588
CleanEx:HS_EIF4B Genevestigator:P23588 GermOnline:ENSG00000063046
Uniprot:P23588
Length = 611
Score = 121 (47.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 43/97 (44%), Positives = 46/97 (47%)
Query: 165 DSKYGS--RDRYVSDRYPPA-------GDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR 215
D +G RDRY SDRY G R DRYGG DRY G R Y+R +R
Sbjct: 217 DDSFGDKYRDRYDSDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRG---SRDYDRGYDSR 273
Query: 216 AGSDRYASG-GPARDDG-RGYRSRAAP-YDRPSRGDR 249
GS R A G G RDD RG R YDR R DR
Sbjct: 274 IGSGRRAFGSGYRRDDDYRGGGDRYEDRYDR--RDDR 308
Score = 102 (41.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 31/67 (46%), Positives = 35/67 (52%)
Query: 177 DRYPPA-GDRLAGDRYGG---SDRYPVNGY--GKERGYERDVGARAGSDRYASGGPARDD 230
D YPP GD GD+Y SDRY +GY G G RD+ G DRY G +RD
Sbjct: 209 DDYPPRRGDDSFGDKYRDRYDSDRYR-DGYRDGYRDGPRRDMDRYGGRDRYDDRG-SRDY 266
Query: 231 GRGYRSR 237
RGY SR
Sbjct: 267 DRGYDSR 273
Score = 46 (21.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 13 IMLERDSGRP---RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ L R+ P +GFG+ + D ++ A+ ++ G+R I V+ A
Sbjct: 124 VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 171
>MGI|MGI:95304 [details] [associations]
symbol:Eif4b "eukaryotic translation initiation factor 4B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:95304 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 CTD:1975 eggNOG:NOG238591 HOGENOM:HOG000006553
HOVERGEN:HBG006129 KO:K03258 EMBL:AK045250 EMBL:AK077423
EMBL:AK170354 IPI:IPI00221581 RefSeq:NP_663600.2 UniGene:Mm.290022
UniGene:Mm.391795 ProteinModelPortal:Q8BGD9 SMR:Q8BGD9
MINT:MINT-1954873 STRING:Q8BGD9 PhosphoSite:Q8BGD9 PaxDb:Q8BGD9
PRIDE:Q8BGD9 Ensembl:ENSMUST00000169681 GeneID:75705 KEGG:mmu:75705
UCSC:uc007xuk.2 GeneTree:ENSGT00530000063406 InParanoid:Q8BGD9
OMA:YAEFDDV OrthoDB:EOG4SQWWX ChiTaRS:EIF4B NextBio:343748
Bgee:Q8BGD9 CleanEx:MM_EIF4B Genevestigator:Q8BGD9
GermOnline:ENSMUSG00000058655 Uniprot:Q8BGD9
Length = 611
Score = 121 (47.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 43/97 (44%), Positives = 46/97 (47%)
Query: 165 DSKYGS--RDRYVSDRYPPA-------GDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR 215
D +G RDRY SDRY G R DRYGG DRY G R Y+R +R
Sbjct: 217 DDSFGDKYRDRYDSDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRG---SRDYDRGYDSR 273
Query: 216 AGSDRYASG-GPARDDG-RGYRSRAAP-YDRPSRGDR 249
GS R A G G RDD RG R YDR R DR
Sbjct: 274 IGSGRRAFGSGYRRDDDYRGGGDRYEDRYDR--RDDR 308
Score = 102 (41.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 31/67 (46%), Positives = 35/67 (52%)
Query: 177 DRYPPA-GDRLAGDRYGG---SDRYPVNGY--GKERGYERDVGARAGSDRYASGGPARDD 230
D YPP GD GD+Y SDRY +GY G G RD+ G DRY G +RD
Sbjct: 209 DDYPPRRGDDSFGDKYRDRYDSDRYR-DGYRDGYRDGPRRDMDRYGGRDRYDDRG-SRDY 266
Query: 231 GRGYRSR 237
RGY SR
Sbjct: 267 DRGYDSR 273
Score = 46 (21.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 13 IMLERDSGRP---RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ L R+ P +GFG+ + D ++ A+ ++ G+R I V+ A
Sbjct: 124 VRLPREPSNPDRLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 171
>UNIPROTKB|E2RKS4 [details] [associations]
symbol:EIF4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:YAEFDDV EMBL:AAEX03015001
EMBL:AAEX03015000 ProteinModelPortal:E2RKS4
Ensembl:ENSCAFT00000011414 Uniprot:E2RKS4
Length = 612
Score = 121 (47.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 43/97 (44%), Positives = 46/97 (47%)
Query: 165 DSKYGS--RDRYVSDRYPPA-------GDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR 215
D +G RDRY SDRY G R DRYGG DRY G R Y+R +R
Sbjct: 217 DDSFGDKYRDRYDSDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRG---SRDYDRGYDSR 273
Query: 216 AGSDRYASG-GPARDDG-RGYRSRAAP-YDRPSRGDR 249
GS R A G G RDD RG R YDR R DR
Sbjct: 274 IGSGRRAFGSGYRRDDDYRGGGDRYEDRYDR--RDDR 308
Score = 102 (41.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 31/67 (46%), Positives = 35/67 (52%)
Query: 177 DRYPPA-GDRLAGDRYGG---SDRYPVNGY--GKERGYERDVGARAGSDRYASGGPARDD 230
D YPP GD GD+Y SDRY +GY G G RD+ G DRY G +RD
Sbjct: 209 DDYPPRRGDDSFGDKYRDRYDSDRYR-DGYRDGYRDGPRRDMDRYGGRDRYDDRG-SRDY 266
Query: 231 GRGYRSR 237
RGY SR
Sbjct: 267 DRGYDSR 273
Score = 46 (21.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 13 IMLERDSGRP---RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ L R+ P +GFG+ + D ++ A+ ++ G+R I V+ A
Sbjct: 124 VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 171
>UNIPROTKB|E7EX17 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 OMA:YAEFDDV EMBL:AC068888 IPI:IPI01022506
ProteinModelPortal:E7EX17 SMR:E7EX17 PRIDE:E7EX17
Ensembl:ENST00000420463 UCSC:uc010snu.2 ArrayExpress:E7EX17
Bgee:E7EX17 Uniprot:E7EX17
Length = 616
Score = 121 (47.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 43/97 (44%), Positives = 46/97 (47%)
Query: 165 DSKYGS--RDRYVSDRYPPA-------GDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR 215
D +G RDRY SDRY G R DRYGG DRY G R Y+R +R
Sbjct: 217 DDSFGDKYRDRYDSDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRG---SRDYDRGYDSR 273
Query: 216 AGSDRYASG-GPARDDG-RGYRSRAAP-YDRPSRGDR 249
GS R A G G RDD RG R YDR R DR
Sbjct: 274 IGSGRRAFGSGYRRDDDYRGGGDRYEDRYDR--RDDR 308
Score = 102 (41.0 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 31/67 (46%), Positives = 35/67 (52%)
Query: 177 DRYPPA-GDRLAGDRYGG---SDRYPVNGY--GKERGYERDVGARAGSDRYASGGPARDD 230
D YPP GD GD+Y SDRY +GY G G RD+ G DRY G +RD
Sbjct: 209 DDYPPRRGDDSFGDKYRDRYDSDRYR-DGYRDGYRDGPRRDMDRYGGRDRYDDRG-SRDY 266
Query: 231 GRGYRSR 237
RGY SR
Sbjct: 267 DRGYDSR 273
Score = 46 (21.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 13 IMLERDSGRP---RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ L R+ P +GFG+ + D ++ A+ ++ G+R I V+ A
Sbjct: 124 VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 171
>UNIPROTKB|F1MYS7 [details] [associations]
symbol:EIF4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:YAEFDDV EMBL:DAAA02012872
EMBL:DAAA02012873 IPI:IPI00700182 UniGene:Bt.77209
Ensembl:ENSBTAT00000009044 Uniprot:F1MYS7
Length = 610
Score = 120 (47.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 43/97 (44%), Positives = 48/97 (49%)
Query: 165 DSKYGS--RDRYVSDRYPPA-------GDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR 215
D +G RDRY SDRY G R DRYGG DRY G G++ Y+R +R
Sbjct: 217 DDSFGDKYRDRYDSDRYRDGYRDSYRDGPRRDMDRYGGRDRYDDRG-GRD--YDRGYDSR 273
Query: 216 AGSDRYASG-GPARDDG-RGYRSRAAP-YDRPSRGDR 249
GS R A G G RDD RG R YDR R DR
Sbjct: 274 IGSGRRAFGSGYRRDDDYRGGGDRYEDRYDR--RDDR 308
Score = 46 (21.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 13 IMLERDSGRP---RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ L R+ P +GFG+ + D ++ A+ ++ G+R I V+ A
Sbjct: 124 VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 171
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 83 (34.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 80 (33.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 26/73 (35%), Positives = 32/73 (43%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPYDR 243
G GG + G G+ RG+ R G R G R+ S R Y RS+ YDR
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYDR 153
Query: 244 PSRGD-RPSFDRY 255
S G R S+D Y
Sbjct: 154 SSGGSYRDSYDSY 166
Score = 70 (29.7 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/59 (44%), Positives = 30/59 (50%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRYASGGPARD--DGRG-YRSR 237
R GDR YGGS R+ GYG R Y G DR +SGG RD D G +RS+
Sbjct: 116 RGGGDRGYGGS-RFESRSGGYGGSRDYYSSRSQGGGYDR-SSGGSYRDSYDSYGKWRSK 172
Score = 61 (26.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 24/62 (38%), Positives = 28/62 (45%)
Query: 192 GGSDRYPVNGYGKERGYERDVGARAGS-DRYAS----GGPARDDGRGYRSRAAPYDR-PS 245
GG DR GYG R +E G GS D Y+S GG R G YR Y + S
Sbjct: 117 GGGDR----GYGGSR-FESRSGGYGGSRDYYSSRSQGGGYDRSSGGSYRDSYDSYGKWRS 171
Query: 246 RG 247
+G
Sbjct: 172 KG 173
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 108 (43.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65
+++ +R++G+P+G+GF Y D+ A+R ++GREF R + V+ A + E
Sbjct: 27 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 80
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 108 (43.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 7 HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
H N+++I+ +R++GRPRGF F+ +++ A+ +++G F R + VN A
Sbjct: 31 HVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 108 (43.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
++++I+ +R++GRPRGF F+ + + A A+ + +G +F R + VN AQ
Sbjct: 31 SNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQ 81
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 108 (43.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
++++I+ +R++GRPRGF F+ + + A A+ + +G +F R + VN AQ
Sbjct: 31 SNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQ 81
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 88 (36.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ ++ +R+S R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 34 EVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 66 (28.3 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 188 GDR-YGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGYRSR 237
GDR YGGS R+ G + RD R+ GS SGG RD Y ++
Sbjct: 114 GDRGYGGSSRFENRSGGYQSSGSRDYYGRSHGSYGDRSGGSYRDSYDSYTTQ 165
Score = 65 (27.9 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 27/78 (34%), Positives = 32/78 (41%)
Query: 182 AGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYA--SGGPARDDGRGY--RSR 237
+ DR G R G S G+ RG D G GS R+ SGG R Y RS
Sbjct: 86 SNDRRGGYRGGSSGGRGFFRGGRGRGGGGDRGY-GGSSRFENRSGGYQSSGSRDYYGRSH 144
Query: 238 AAPYDRPSRGDRPSFDRY 255
+ DR R S+D Y
Sbjct: 145 GSYGDRSGGSYRDSYDSY 162
Score = 55 (24.4 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 27/78 (34%), Positives = 34/78 (43%)
Query: 178 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGR--GYR 235
R AG + + DR GG Y G RG+ R R G GG +R + R GY+
Sbjct: 78 RVDQAG-KSSNDRRGG---YR-GGSSGGRGFFRGGRGRGGGGDRGYGGSSRFENRSGGYQ 132
Query: 236 SRAAP--YDRP--SRGDR 249
S + Y R S GDR
Sbjct: 133 SSGSRDYYGRSHGSYGDR 150
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 83 (34.3 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 64 (27.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGY 234
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSY 167
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 83 (34.3 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 64 (27.6 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGY 234
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSY 167
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 83 (34.3 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 64 (27.6 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGY 234
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSY 167
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 106 (42.4 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 13 IMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +R++GR RGFGF++++ + ++AI+EM G+E R I VN A
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>WB|WBGene00011730 [details] [associations]
symbol:drr-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0006412
"translation" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008340 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005844
GeneTree:ENSGT00530000063406 HSSP:P26368 EMBL:Z81120 PIR:T24858
RefSeq:NP_499818.1 ProteinModelPortal:O45781 SMR:O45781
DIP:DIP-26980N MINT:MINT-1066038 STRING:O45781 PaxDb:O45781
EnsemblMetazoa:T12D8.2.1 EnsemblMetazoa:T12D8.2.2 GeneID:259546
KEGG:cel:CELE_T12D8.2 UCSC:T12D8.2.1 CTD:259546 WormBase:T12D8.2
eggNOG:NOG240551 InParanoid:O45781 OMA:YVTFENE NextBio:952074
Uniprot:O45781
Length = 207
Score = 119 (46.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 20/52 (38%), Positives = 38/52 (73%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D+ ++ +RDSG +GF ++T+ + + M+ AI ++G +FG+RV+ VN+AQ +
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQR 91
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 83 (34.3 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGFIT+ + A+R M+G R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82
Score = 70 (29.7 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 23/51 (45%), Positives = 25/51 (49%)
Query: 185 RLAGDRYGGSDRY---PVNGYGKERGYERDVGAR--AGSDRYASGGPARDD 230
R GD+ GS RY GYG G RD R G DRY SGG RD+
Sbjct: 105 RGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRY-SGGNYRDN 154
Score = 68 (29.0 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 26/79 (32%), Positives = 34/79 (43%)
Query: 178 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGYRS 236
R AG G R GG +G+ R Y R G + GS RY P G GY
Sbjct: 78 RVDHAGKSARGTRGGG-----FGAHGRGRSYSRGGGDQGYGSGRYYDSRPG-GYGYGY-G 130
Query: 237 RAAPYDRPSRGDRPSFDRY 255
R+ Y+ ++G +DRY
Sbjct: 131 RSRDYNGRNQG---GYDRY 146
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 83 (34.3 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 72 (30.4 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 26/74 (35%), Positives = 32/74 (43%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G R+ S R Y RS+ Y D
Sbjct: 95 GGSSGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGSYGD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 66 (28.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 25/55 (45%), Positives = 27/55 (49%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGY--ERDVGARAGSDRYASGGPARDDGRGY 234
R GDR YGGS R+ GYG R Y R G G DR +SGG RD Y
Sbjct: 116 RGGGDRGYGGS-RFESRSGGYGGSRDYYSSRSQGGSYG-DR-SSGGSYRDSYDSY 167
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 84 (34.6 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 33/95 (34%), Positives = 40/95 (42%)
Query: 164 KDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKE-RGYE-RDVGARAGSDRY 221
+D Y +DRY D Y +G YG S YG R Y RD G + D Y
Sbjct: 185 RDDGYSGKDRY--DGY-------SGRDYGSSR--DSRDYGPPPRDYAYRDYGHSSSRDDY 233
Query: 222 ASGGPARDDGRGYRSRAAPYDRPSRGD-RPSFDRY 255
S G + DG G R D PS G R S++ Y
Sbjct: 234 GSRGYSDRDGYGGRDSRDYSDHPSGGSYRDSYESY 268
Score = 83 (34.3 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA RE++G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQA 84
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 83 (34.3 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 71 (30.1 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 27/74 (36%), Positives = 34/74 (45%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRY--ASGG--PARDDGRGYRSRAAPYD 242
G GG + G G+ RG+ R G R G R+ SGG +RD RS+ D
Sbjct: 95 GGSTGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFDSRSGGYNGSRDYYNSSRSQGGYGD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 61 (26.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRYASGGPARDDGRGY 234
R GDR YGGS R+ GY R Y ++ G +SGG RD Y
Sbjct: 116 RGGGDRGYGGS-RFDSRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDSYDSY 167
Score = 51 (23.0 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 163 SKDSKY-GSRDRYVSDRYPPA-GDRLAGDRYGGS-DRY 197
S+ Y GSRD Y S R GDR +G Y S D Y
Sbjct: 130 SRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDSYDSY 167
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 105 (42.0 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D +++ +RDSGR +GFGF+TYA + A EM+ + VI V+ A+P+
Sbjct: 62 DARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPR 113
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 71 (30.1 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 95 CFKCGRPGHWARDCP 109
CF CG+ GHW + CP
Sbjct: 84 CFACGQEGHWIKSCP 98
Score = 67 (28.6 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
R + F+ Y +RR DDA++ ++G + ISV A+ GG+ +D+
Sbjct: 38 RCYAFVEYKERRDADDALKALNGTTLLNSKISVEWAK---GGKNADN 81
Score = 60 (26.2 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 34/89 (38%), Positives = 39/89 (43%)
Query: 166 SKYGSRDRYVSDRY-PPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASG 224
S+ SRDR S RY P+ DR DR DR + R RD R R S
Sbjct: 111 SRSHSRDRR-SRRYRSPSWDRR--DR--SRDRSRDRSRDRSRDRSRDRRDRRRDRRDRSR 165
Query: 225 GPARDDGRGYRSRAAPYDRPSRGDRPSFD 253
+RD GR RSR DR SR R + D
Sbjct: 166 DRSRD-GRRERSRDRSRDR-SRDARRNRD 192
Score = 48 (22.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 26/76 (34%), Positives = 31/76 (40%)
Query: 163 SKD-SKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRY 221
S+D S+ SRDR DR DR R DR + R RD A +R
Sbjct: 134 SRDRSRDRSRDRS-RDRSRDRRDRRRDRRDRSRDRSRDGRRERSRDRSRDRSRDARRNRD 192
Query: 222 ASGGPARDDGRGYRSR 237
S +RD R RSR
Sbjct: 193 TSRDRSRDRSRD-RSR 207
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 24/59 (40%), Positives = 27/59 (45%)
Query: 200 NGYGKERGYERDVGARAGSDR----YASGGPARDDGRGYRSRAAPYDRPSRGDRPSFDR 254
NG GK+R +R + DR Y S R D RSR DR SR DR S DR
Sbjct: 99 NG-GKKRSRDRSLSRSHSRDRRSRRYRSPSWDRRDRSRDRSRDRSRDR-SR-DR-SRDR 153
Score = 39 (18.8 bits), Expect = 0.00091, Sum P(3) = 0.00091
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 163 SKD-SKYGSRDRYVS-DRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDR 220
S+D S+ R+R S DR + DR G + + R RD R+
Sbjct: 180 SRDRSRDARRNRDTSRDR---SRDRSRDRSRDGGNIIRDTSRDRRRNNSRD---RSRDRS 233
Query: 221 YASGGPARDDGRGYRSRAAPYDRPSRGDR 249
++GG +R R RSR DR SR DR
Sbjct: 234 RSNGGGSRYSSRRDRSRDRSRDR-SR-DR 260
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 107 (42.7 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVS 67
+KI+ +R S R + +GF+T+++RR+ DDAI +M G+ G R + VN + GG ++
Sbjct: 36 VKIVNDR-SVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDVTTR-GGRMN 90
Score = 52 (23.4 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 25/86 (29%), Positives = 34/86 (39%)
Query: 164 KDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYAS 223
KD +Y ++R Y + D +R D NGY KER ++ D G G Y
Sbjct: 134 KDHRYIEKER----AYEHSHDF---ERRNDHDMVDRNGY-KERVFDGDEGDWRGDRSYV- 184
Query: 224 GGPARDDGRGYRSRAAPYDRPSRGDR 249
D+GRG +A R R
Sbjct: 185 -----DNGRGINGTSAHEGRSQETKR 205
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 83 (34.3 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 71 (30.1 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 27/74 (36%), Positives = 34/74 (45%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRY--ASGG--PARDDGRGYRSRAAPYD 242
G GG + G G+ RG+ R G R G R+ SGG +RD RS+ D
Sbjct: 95 GGSTGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFDSRSGGYNGSRDYYNSSRSQGGYGD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 61 (26.5 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRYASGGPARDDGRGY 234
R GDR YGGS R+ GY R Y ++ G +SGG RD Y
Sbjct: 116 RGGGDRGYGGS-RFDSRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDSYDSY 167
Score = 51 (23.0 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 163 SKDSKY-GSRDRYVSDRYPPA-GDRLAGDRYGGS-DRY 197
S+ Y GSRD Y S R GDR +G Y S D Y
Sbjct: 130 SRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDSYDSY 167
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 83 (34.3 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 71 (30.1 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 26/74 (35%), Positives = 32/74 (43%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G R+ S R Y RS+ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 65 (27.9 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 25/55 (45%), Positives = 27/55 (49%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGY--ERDVGARAGSDRYASGGPARDDGRGY 234
R GDR YGGS R+ GYG R Y R G G DR +SGG RD Y
Sbjct: 116 RGGGDRGYGGS-RFESRSGGYGGSRDYYSSRSQGGGYG-DR-SSGGSYRDSYDSY 167
>UNIPROTKB|B3KRG5 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0001047 "core
promoter binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] GO:GO:0003676
GO:GO:0030529 EMBL:AL683813 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380118 UniGene:Hs.710162 HGNC:HGNC:9910
ChiTaRS:RBMX EMBL:AK091520 IPI:IPI00939558 STRING:B3KRG5
Ensembl:ENST00000570135 Uniprot:B3KRG5
Length = 256
Score = 120 (47.3 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 81 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 134
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 135 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 169
>UNIPROTKB|H3BUY5 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0001047
"core promoter binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
EMBL:AL683813 InterPro:IPR012604 Pfam:PF08081 HGNC:HGNC:9910
ChiTaRS:RBMX Ensembl:ENST00000565438 Bgee:H3BUY5 Uniprot:H3BUY5
Length = 263
Score = 120 (47.3 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 163 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 214
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 88 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 141
Query: 215 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 142 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 176
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 85 (35.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A G
Sbjct: 32 SEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKSSG 86
Score = 66 (28.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 32/87 (36%), Positives = 38/87 (43%)
Query: 178 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYE-RDVGARA-GSDRY--ASGGPARDDG-R 232
R AG + +GDR GG G G RG R G R GS R+ SGG G R
Sbjct: 77 RVDQAG-KSSGDRRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDNRSGGYGGSSGSR 135
Query: 233 GY----RSRAAPYDRPSRGDRPSFDRY 255
Y RS+ + DR R S+D Y
Sbjct: 136 DYYSSGRSQGSYGDRAGGSYRDSYDSY 162
Score = 48 (22.0 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 169 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGY 202
GSRD Y S R G GDR GGS R + Y
Sbjct: 133 GSRDYYSSGR--SQGSY--GDRAGGSYRDSYDSY 162
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 67 (28.6 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 27/68 (39%), Positives = 31/68 (45%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGYRS--RA 238
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y + RA
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSYEAGQRA 173
Query: 239 APYDRPSR 246
P R
Sbjct: 174 EARGIPGR 181
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 71 (30.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 26/74 (35%), Positives = 32/74 (43%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G R+ S R Y RS+ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 68 (29.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 27/60 (45%), Positives = 31/60 (51%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGY--ERDVGARAGSDRYASGGPARDDGRGY-RSRA 238
R GDR YGGS R+ GYG R Y R G G DR +SGG RD Y +SR+
Sbjct: 116 RGGGDRGYGGS-RFESRSGGYGGSRDYYSSRSQGGGYG-DR-SSGGSYRDSYDSYGKSRS 172
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 87 (35.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A K GE
Sbjct: 32 SEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAG-KSSGE 87
Score = 62 (26.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/87 (35%), Positives = 38/87 (43%)
Query: 178 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYE-RDVGARA-GSDRY--ASGGPARDDG-R 232
R AG + +G+R GG G G RG R G R GS R+ SGG G R
Sbjct: 77 RVDQAG-KSSGERRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDNRSGGYGGSSGSR 135
Query: 233 GY----RSRAAPYDRPSRGDRPSFDRY 255
Y RS+ + DR R S+D Y
Sbjct: 136 DYYGSGRSQGSYGDRSGGSYRDSYDSY 162
Score = 47 (21.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 169 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGY 202
GSRD Y S R G GDR GGS R + Y
Sbjct: 133 GSRDYYGSGR--SQGSY--GDRSGGSYRDSYDSY 162
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 102 (41.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 13 IMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
++ +RD+ R RGFGF+ +A D A+ M+ +EF R+I V+KA +
Sbjct: 33 VVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVDKASER 81
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 102 (41.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSD 68
+ K++++R++GR +GF FITY + A +A+ + +G + R I VN A+ G D
Sbjct: 46 EAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIARENTGDRRRD 104
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 102 (41.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSD 68
+ K++++R++GR +GF FITY + A +A+ + +G + R I VN A+ G D
Sbjct: 46 EAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIARENTGDRRRD 104
>DICTYBASE|DDB_G0284245 [details] [associations]
symbol:DDB_G0284245 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0284245 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 EMBL:AAFI02000064 ProtClustDB:CLSZ2846728
RefSeq:XP_638672.1 ProteinModelPortal:Q54PX3 PRIDE:Q54PX3
EnsemblProtists:DDB0233309 GeneID:8624501 KEGG:ddi:DDB_G0284245
eggNOG:KOG0106 InParanoid:Q54PX3 OMA:DDAINSE Uniprot:Q54PX3
Length = 365
Score = 73 (30.8 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 88 RPGGQDD-CFKCGRPGHWARDCP 109
RP CF C GHWAR CP
Sbjct: 78 RPDSSSGKCFMCNEEGHWARSCP 100
Score = 69 (29.3 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63
+GF FI Y D+ + DDAI H + F R I V + G
Sbjct: 35 KGFCFIEYFDKASADDAINSEHKQNFLGRNIIVELSNSSKG 75
Score = 55 (24.4 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDR-YGGSDRYPVNGYGKERGYERDVGARAGSDRY 221
+K ++ SRDR +R P +R +R S NG + R R+ G ++
Sbjct: 253 NKRNRSSSRDRNKRNRSPSKENRYRRERDRSSSGTRNGNGRDRSRSTSRN-GLNKPNNNN 311
Query: 222 ASGGPARDDGRGYRSRAAPYDRPSRGDR 249
+ + G RSR+ +R DR
Sbjct: 312 NNNNNNNNKSNGNRSRSGSRNRNPSPDR 339
Score = 50 (22.7 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 21/87 (24%), Positives = 33/87 (37%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARD 229
SRDR DR + R + NG G G + ++ + +
Sbjct: 191 SRDRSRDRSRERERDR-SNSRNNNNGNGNGNGNGNGNGNGNNNNNNNNNNNINNNNNSNS 249
Query: 230 DGRGYRSRAAPYDRPSRGDRPSFD-RY 255
+G R+R++ DR R PS + RY
Sbjct: 250 NGNNKRNRSSSRDRNKRNRSPSKENRY 276
Score = 48 (22.0 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 20/63 (31%), Positives = 23/63 (36%)
Query: 192 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRPS 251
GG N Y +ER R DR R D R R R+ R SR +R
Sbjct: 102 GGKKNSRYNPYHRERSRSRSRDRSRDRDRRRDDR-RRSDKRRERDRSRSRSR-SRDNRRR 159
Query: 252 FDR 254
DR
Sbjct: 160 DDR 162
>ASPGD|ASPL0000005578 [details] [associations]
symbol:AN6676 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
HOGENOM:HOG000180680 Uniprot:Q5AYF4
Length = 307
Score = 94 (38.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 33/87 (37%), Positives = 35/87 (40%)
Query: 169 GSRDRYVSDR--YPPAGDRLAGDRYGGSDRYPVNGYGKERGYE----RDVGARAGSDRYA 222
G DRY R Y R GD Y G RY + Y R Y RD G R D YA
Sbjct: 170 GRGDRYDDRRGGYGGGNWRRGGDDYRGYGRY--DSYSDRRDYGGRDYRDYGRRDYRDDYA 227
Query: 223 SGGPARDDGRGYRSRAAPYDRPSRGDR 249
GGP GYR A Y R +R
Sbjct: 228 -GGPGGSGSGGYRGGADRYASGGREER 253
Score = 85 (35.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 41/99 (41%), Positives = 44/99 (44%)
Query: 168 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGP- 226
YG D Y SDR G R D YG D Y + Y G G R G+DRYASGG
Sbjct: 197 YGRYDSY-SDRRDYGG-RDYRD-YGRRD-YR-DDYAGGPGGSGSGGYRGGADRYASGGRE 251
Query: 227 ---ARDDGRGYR--SRAAPYDR----PSRGD-RPSFDRY 255
RD+ R R R YDR PS G PS D Y
Sbjct: 252 ERYGRDERRDDRRDERRGYYDRDANPPSYGHGAPSRDPY 290
Score = 64 (27.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 13 IMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
IM++ + RGFGF+ D A + G R +S+ KA+
Sbjct: 98 IMVDPHTKESRGFGFVNMVTAEQADAAKEGLQGEVIEGRTLSIEKAR 144
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 84 (34.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ I+ +R++ R RGFGFIT+ + + +R M+G R I V+ A
Sbjct: 33 SEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAMNGESLDGRQIHVDHA 82
Score = 63 (27.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 168 YGSRDRYVSDRYPPAGDRLAGD-RYGGSDRYPVNGYGKERGYERDVGARA-GS-DRYASG 224
+G+R R S G++ +G+ RY V GYG G RD G+R+ GS D Y SG
Sbjct: 94 FGARGRGYSRG---GGEQGSGNGRYDSRPGGYVYGYGY--GKSRDYGSRSQGSYDSY-SG 147
Query: 225 GPARDD 230
G RD+
Sbjct: 148 GNCRDN 153
>UNIPROTKB|B4DS13 [details] [associations]
symbol:EIF4B "cDNA FLJ59405, highly similar to Eukaryotic
translation initiation factor 4B" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743
UniGene:Hs.648394 UniGene:Hs.702041 HGNC:HGNC:3285
HOGENOM:HOG000006553 HOVERGEN:HBG006129 OrthoDB:EOG4SQWWX
EMBL:AC068888 EMBL:AK299526 IPI:IPI00798302 SMR:B4DS13
STRING:B4DS13 Ensembl:ENST00000416762 UCSC:uc010snv.2
Uniprot:B4DS13
Length = 572
Score = 121 (47.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 43/97 (44%), Positives = 46/97 (47%)
Query: 165 DSKYGS--RDRYVSDRYPPA-------GDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR 215
D +G RDRY SDRY G R DRYGG DRY G R Y+R +R
Sbjct: 178 DDSFGDKYRDRYDSDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRG---SRDYDRGYDSR 234
Query: 216 AGSDRYASG-GPARDDG-RGYRSRAAP-YDRPSRGDR 249
GS R A G G RDD RG R YDR R DR
Sbjct: 235 IGSGRRAFGSGYRRDDDYRGGGDRYEDRYDR--RDDR 269
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 93 (37.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
D KI+++R++GR RGF F+T+ +A+ ++ G++ R I VN A + G
Sbjct: 62 DAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYATERGSG 115
Score = 62 (26.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 22/62 (35%), Positives = 26/62 (41%)
Query: 181 PAGDRLAG-DRYGGSDRYPVN-----GYGKERGYERDVGARAGSDRYASGGPARDDGRGY 234
PAG G YGG+ Y N GYG Y + G G+ Y+ G A G GY
Sbjct: 138 PAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYGGNPPYS--GNAVGGGGGY 195
Query: 235 RS 236
S
Sbjct: 196 GS 197
Score = 53 (23.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 168 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPV-NGYGKERGYERDVGARAG-SDRYASGG 225
YG Y + G G +GG Y V G G + + AG D++ S
Sbjct: 178 YGGNPPYSGNAVGGGGGY--GSNFGGGGGYGVAGGVGGSENFAQGSSTNAGFDDKFESNQ 235
Query: 226 PARDD 230
P +D
Sbjct: 236 PLGND 240
Score = 50 (22.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 191 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRP 250
YGG+ Y N G GY + G G G + + +G + A +D ++P
Sbjct: 178 YGGNPPYSGNAVGGGGGYGSNFGGGGGYGVAGGVGGSENFAQGSSTNAG-FDDKFESNQP 236
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 83 (34.3 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA RE++G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQA 84
Score = 76 (31.8 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 32/95 (33%), Positives = 39/95 (41%)
Query: 164 KDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKE-RGYE-RDVGARAGSDRY 221
+D Y +DRY D Y +G YG S YG R Y RD G + D Y
Sbjct: 185 RDDGYSGKDRY--DGY-------SGRDYGSSR--DSRDYGPPPRDYSYRDYGHSSSRDDY 233
Query: 222 ASGGPARDDGRGYRSRAAPYDRPSRGD-RPSFDRY 255
S G + DG G R D S G R S++ Y
Sbjct: 234 GSRGYSDRDGYGGRDSRDYSDHQSGGSYRDSYEGY 268
Score = 71 (30.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 39/107 (36%), Positives = 42/107 (39%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRY-GGSDRYPVNGYGKERGYERDVG---ARAGS 218
S+D YGSR D Y R D GGS R GYG R G + GS
Sbjct: 229 SRDD-YGSRGYSDRDGYGGRDSRDYSDHQSGGSYRDSYEGYGNSRSAPPARGPPPSYGGS 287
Query: 219 DRYASGGPARDD--GR-GYRS-RAAPY----DRPSRGDR---PSFDR 254
RY RD GR Y S R Y DR R +R PS DR
Sbjct: 288 SRYDDYSSTRDGYGGRDSYSSSRNDIYSSGRDRVGRQERGLPPSMDR 334
Score = 67 (28.6 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 32/89 (35%), Positives = 40/89 (44%)
Query: 170 SRDRYVSDRY-PPAGDRLAGDRYGGSDRYPVNGYGKER-GYE-RDVGARAGSDRYASGGP 226
S + Y + R PPA R YGGS RY + Y R GY RD + + +D Y+SG
Sbjct: 264 SYEGYGNSRSAPPA--RGPPPSYGGSSRY--DDYSSTRDGYGGRDSYSSSRNDIYSSGR- 318
Query: 227 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
D G + R P RG P D Y
Sbjct: 319 ---DRVGRQERGLPPSM-DRGYPPPRDSY 343
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 83 (34.3 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 64 (27.6 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGY 234
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSY 167
>WB|WBGene00004705 [details] [associations]
symbol:rsp-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
NextBio:893300 Uniprot:Q9XTZ2
Length = 309
Score = 98 (39.6 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 29/63 (46%), Positives = 32/63 (50%)
Query: 177 DRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARD--DGRG- 233
DR+ G R GDRYGG R G G +R Y G R G DRY GG R D RG
Sbjct: 186 DRFNDRGSR-GGDRYGGDRRGGGGGGGGDR-YGGGGGDRYGGDRYGGGGGRRGSPDRRGG 243
Query: 234 YRS 236
+RS
Sbjct: 244 FRS 246
Score = 54 (24.1 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 9 NDLKIMLERDSGRPRGFGFITY 30
N ++ +R SG RGFGFI +
Sbjct: 103 NKCDLVYDRPSGNSRGFGFIYF 124
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 119 (46.9 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62
+K+M++ DSGR RGFGF+ Y + A+ EM+G+E R+I V +AQ ++
Sbjct: 220 VKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 73 (30.8 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 93 DDCFKCGRPGHWARDCP 109
D+CF C GHWAR CP
Sbjct: 251 DECFICRGRGHWARSCP 267
Score = 67 (28.6 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 200 NGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDR 249
NG ++R Y R +R+ S RY S G G YR R+ R GDR
Sbjct: 334 NGRNRDRSYSR---SRSRSPRYRSNG-----GNRYRDRSRDRSRDRSGDR 375
Score = 62 (26.9 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 163 SKDSKYGSR--DRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDR 220
S+ +Y S +RY + DR +GDR GGSDR ER ER +R
Sbjct: 347 SRSPRYRSNGGNRYRDRSRDRSRDR-SGDRRGGSDRRSGRDRSTERRRERSKSNERRRER 405
Query: 221 YASGGP 226
+ P
Sbjct: 406 EGNNSP 411
Score = 53 (23.7 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 24 GFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
G+ F+ + + ++ DAI EMH I V K+
Sbjct: 209 GYAFVEFDNEKSARDAIEEMHDSIVDGEKILVEKS 243
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 85 (35.0 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 25/64 (39%), Positives = 28/64 (43%)
Query: 179 YPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDR-YASGGPARDDGRGYRSR 237
Y G R G YGG D Y NGYG G G G +R Y SGG G GY ++
Sbjct: 248 YGGGGGRGGGGGYGGGDGY--NGYGGGNGGYGGGGPNYGGNRGYGSGGGGGGGG-GYGNQ 304
Query: 238 AAPY 241
Y
Sbjct: 305 GGGY 308
Score = 73 (30.8 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDD-AIREMH 44
+++ IM E++S + RGF FIT+ D A+D I++ H
Sbjct: 156 DEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYH 192
Score = 62 (26.9 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAI 40
D +M + ++ R RGFGF+TY+ +D A+
Sbjct: 66 DCVVMRDPNTKRSRGFGFVTYSSVGEVDAAM 96
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 82 (33.9 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 28/73 (38%), Positives = 33/73 (45%)
Query: 183 GDRLAGDRYGGS-DRYPVNGYGKERGYERD-VGARAGSDRYASGGPAR-DDGRGYRSRAA 239
G R G YGGS D Y NG+G + GY G GS Y SGG + G GY +
Sbjct: 230 GSR-GGGGYGGSGDGY--NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGS 286
Query: 240 PYDRPSRGDRPSF 252
YD + G F
Sbjct: 287 -YDSYNNGGGGGF 298
Score = 75 (31.5 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDD-AIREMH 44
++IM +R SG+ RGF F+T+ D ++D I++ H
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 168
Score = 70 (29.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
D +M + ++ R RGFGF+TYA +D A+ + G RV+ +A
Sbjct: 42 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG-RVVEPKRA 89
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 77 (32.2 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 30/81 (37%), Positives = 38/81 (46%)
Query: 182 AGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYAS--GGPARDDGRG----YR 235
AG G R GG+ +GY + RG++ GS RY S GG G G Y
Sbjct: 82 AGKSARGTR-GGAFEAHGHGYSRGRGHQS-----YGSSRYDSLPGGYGYGYGYGRSRDYG 135
Query: 236 SRAAPYDRPSRGD-RPSFDRY 255
S YDR S G+ R ++DRY
Sbjct: 136 SSQGSYDRYSGGNYRDNYDRY 156
Score = 68 (29.0 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ ++ + ++ R +GFGFIT+ + +A+R +G R I V+ A
Sbjct: 34 EVVVVKDWETRRSQGFGFITFTNPEHASNAMRATNGESLDGRQIHVDHA 82
>RGD|1309595 [details] [associations]
symbol:Taf15 "TAF15 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
RGD:1309595 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:AC119615 IPI:IPI00950713
PRIDE:F1M8P1 Ensembl:ENSRNOT00000014438 ArrayExpress:F1M8P1
Uniprot:F1M8P1
Length = 554
Score = 93 (37.8 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 37/94 (39%), Positives = 40/94 (42%)
Query: 169 GSRDRYVSDRYPPAGDR---LAGDRYG-GSDRYPVNGYGKERG-YERDVGARAGSDRYAS 223
G R Y DR GDR GDR G G DR GYG +RG Y D G G R A
Sbjct: 445 GDRSGYGGDRGGYGGDRGGSYGGDRGGYGGDR---GGYGGDRGGYGGDRGGYGGDRRGAY 501
Query: 224 GGPARDDGRGYRS-RAAPY--DRPSR--GDRPSF 252
GG GY R+ Y DR GDR +
Sbjct: 502 GGDRGGGSGGYGGDRSGGYGGDRGGGYGGDRGGY 535
Score = 90 (36.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 33/82 (40%), Positives = 36/82 (43%)
Query: 169 GSRDRYVSDRYPPAGDR--LAGDR---YGGSDRYPVNGYGKER--GYERDVGARAGSDRY 221
G R Y DR GDR GDR YGG GYG +R GY D G G DR
Sbjct: 474 GDRGGYGGDRGGYGGDRGGYGGDRRGAYGGDRGGGSGGYGGDRSGGYGGDRGGGYGGDRG 533
Query: 222 ASGGP--ARDDGRGYRSRAAPY 241
GG R+D R + R PY
Sbjct: 534 GYGGKMGGRNDYRNDQ-RNRPY 554
Score = 66 (28.3 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ + ++D+G+P+G +++ D + AI G+EF +I V+ A
Sbjct: 269 INLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFA 316
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 83 (34.3 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 59 (25.8 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 22/65 (33%), Positives = 29/65 (44%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 242
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 243 RPSRG 247
R S G
Sbjct: 154 RSSGG 158
Score = 54 (24.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 185 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGG 225
R GDR YGG+ R+ GYG R Y G SDR +SGG
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGG 158
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 86 (35.3 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 44 (20.5 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 164 KDSKYGSRDRYVSDRYPPAGD 184
+D Y ++D Y S YP + D
Sbjct: 97 RDDGYSTKDSYSSRDYPSSRD 117
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 81 (33.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 27/68 (39%), Positives = 32/68 (47%)
Query: 183 GDRLAGDRYGGS-DRYPVNGYGKERGYERD-VGARAGSDRYASGGPAR-DDGRGYRSRAA 239
G R G YGGS D Y NG+G + GY G GS Y SGG + G GY +
Sbjct: 230 GSR-GGGGYGGSGDGY--NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGS 286
Query: 240 PYDRPSRG 247
YD + G
Sbjct: 287 -YDSYNNG 293
Score = 75 (31.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDD-AIREMH 44
++IM +R SG+ RGF F+T+ D ++D I++ H
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 168
Score = 70 (29.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
D +M + ++ R RGFGF+TYA +D A+ + G RV+ +A
Sbjct: 42 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG-RVVEPKRA 89
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 81 (33.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 27/68 (39%), Positives = 32/68 (47%)
Query: 183 GDRLAGDRYGGS-DRYPVNGYGKERGYERD-VGARAGSDRYASGGPAR-DDGRGYRSRAA 239
G R G YGGS D Y NG+G + GY G GS Y SGG + G GY +
Sbjct: 230 GSR-GGGGYGGSGDGY--NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGS 286
Query: 240 PYDRPSRG 247
YD + G
Sbjct: 287 -YDSYNNG 293
Score = 75 (31.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDD-AIREMH 44
++IM +R SG+ RGF F+T+ D ++D I++ H
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 168
Score = 70 (29.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
D +M + ++ R RGFGF+TYA +D A+ + G RV+ +A
Sbjct: 42 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG-RVVEPKRA 89
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 95 (38.5 bits), Expect = 0.00011, P = 0.00011
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP--KMGG 64
+++++R +GR RGFGF+ + AI ++G+E R + VN+A+P + GG
Sbjct: 33 QVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNEARPPERRGG 87
>TAIR|locus:2049339 [details] [associations]
symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
Genevestigator:Q9SJ28 Uniprot:Q9SJ28
Length = 117
Score = 95 (38.5 bits), Expect = 0.00011, P = 0.00011
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISV 55
D KI+ +RD+G+ R FGF+T+ + ++M DAI M E + ++V
Sbjct: 35 DSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMDVEESRSKCVNV 80
>TAIR|locus:2121219 [details] [associations]
symbol:GRP2 "AT4G38680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=IEP] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0048316 "seed development" evidence=IMP] [GO:0048443 "stamen
development" evidence=IMP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0043457 "regulation of cellular respiration"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005829
GO:GO:0005886 GO:GO:0009737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 GO:GO:0009631 GO:GO:0048443 GO:GO:0048316
GO:GO:0003690 GO:GO:0003697 GO:GO:0010228 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10 GO:GO:0009269
EMBL:AL161593 HOGENOM:HOG000186262 InterPro:IPR019844 GO:GO:0043457
eggNOG:COG1278 GO:GO:0032508 EMBL:S47408 EMBL:AL035540
EMBL:AF360202 EMBL:AF385696 EMBL:AY040049 EMBL:AY133591
EMBL:AK318762 IPI:IPI00537614 IPI:IPI00930938 PIR:JQ1061
RefSeq:NP_195580.1 UniGene:At.24348 UniGene:At.75605 HSSP:O54310
ProteinModelPortal:Q41188 SMR:Q41188 STRING:Q41188 PRIDE:Q41188
ProMEX:Q41188 EnsemblPlants:AT4G38680.1 GeneID:830024
KEGG:ath:AT4G38680 TAIR:At4g38680 InParanoid:Q41188 OMA:DCYKCGE
PhylomeDB:Q41188 ProtClustDB:CLSN2683565 Genevestigator:Q41188
Uniprot:Q41188
Length = 203
Score = 86 (35.3 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 91 GQDDCFKCGRPGHWARDC 108
G DC+KCG PGH ARDC
Sbjct: 127 GGSDCYKCGEPGHMARDC 144
Score = 47 (21.6 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 14/38 (36%), Positives = 14/38 (36%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 225
G YGG GYG GY G G R GG
Sbjct: 148 GGGYGGGG----GGYGGGGGYGGGGGGYGGGGRGGGGG 181
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 23 RGFGFITYADRRAMDDA-IREMHGREFGDRVISVNKA 58
+GFGFIT D DD + + R G R ++ +A
Sbjct: 22 KGFGFITPDD--GGDDLFVHQSSIRSEGFRSLAAEEA 56
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 81 (33.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/68 (39%), Positives = 32/68 (47%)
Query: 183 GDRLAGDRYGGS-DRYPVNGYGKERGYERD-VGARAGSDRYASGGPAR-DDGRGYRSRAA 239
G R G YGGS D Y NG+G + GY G GS Y SGG + G GY +
Sbjct: 251 GSR-GGGGYGGSGDGY--NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGS 307
Query: 240 PYDRPSRG 247
YD + G
Sbjct: 308 -YDSYNNG 314
Score = 75 (31.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDD-AIREMH 44
++IM +R SG+ RGF F+T+ D ++D I++ H
Sbjct: 155 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 189
Score = 70 (29.7 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
D +M + ++ R RGFGF+TYA +D A+ + G RV+ +A
Sbjct: 63 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG-RVVEPKRA 110
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 83 (34.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 169 GSRDRYVSDRYPPAG-DRLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRY-AS 223
G R + R G R GDR YGG R+ GYG R Y ++ GS Y +S
Sbjct: 99 GGRGFFRGGRSRGRGFSRGGGDRGYGGG-RFESRSGGYGGSRDYYAS-RSQGGSYGYRSS 156
Query: 224 GGPARDDGRGY 234
GG RD Y
Sbjct: 157 GGSYRDSYDSY 167
Score = 58 (25.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPYD- 242
G GG + G + RG+ R G R G R+ S R Y RS+ Y
Sbjct: 95 GGSAGGRGFFR-GGRSRGRGFSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGY 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 83 (34.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 169 GSRDRYVSDRYPPAG-DRLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRY-AS 223
G R + R G R GDR YGG R+ GYG R Y ++ GS Y +S
Sbjct: 99 GGRGFFRGGRSRGRGFSRGGGDRGYGGG-RFESRSGGYGGSRDYYAS-RSQGGSYGYRSS 156
Query: 224 GGPARDDGRGY 234
GG RD Y
Sbjct: 157 GGSYRDSYDSY 167
Score = 58 (25.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPYD- 242
G GG + G + RG+ R G R G R+ S R Y RS+ Y
Sbjct: 95 GGSAGGRGFFR-GGRSRGRGFSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGY 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 83 (34.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 169 GSRDRYVSDRYPPAG-DRLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRY-AS 223
G R + R G R GDR YGG R+ GYG R Y ++ GS Y +S
Sbjct: 99 GGRGFFRGGRSRGRGFSRGGGDRGYGGG-RFESRSGGYGGSRDYYAS-RSQGGSYGYRSS 156
Query: 224 GGPARDDGRGY 234
GG RD Y
Sbjct: 157 GGSYRDSYDSY 167
Score = 58 (25.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPYD- 242
G GG + G + RG+ R G R G R+ S R Y RS+ Y
Sbjct: 95 GGSAGGRGFFR-GGRSRGRGFSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGY 153
Query: 243 RPSRGD-RPSFDRY 255
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 93 (37.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 IMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
I+ +R SG P+G+ +I + ++ AI E+HG+EF R + V + + G
Sbjct: 59 ILFDRFSGLPKGYAYIEFEQTESVQKAIDELHGKEFRGRELRVTAKRTNLPG 110
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDD 230
G R G R G G+ RG G R G A G ++
Sbjct: 119 GFRARGRGRGGFRGRGRGRGGFNSRGTRNGDSEQADGDAENEE 161
>UNIPROTKB|D6RAT4 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AC108673 EMBL:AC135587 HGNC:HGNC:13164
ChiTaRS:CNBP IPI:IPI00965541 ProteinModelPortal:D6RAT4 SMR:D6RAT4
Ensembl:ENST00000512338 ArrayExpress:D6RAT4 Bgee:D6RAT4
Uniprot:D6RAT4
Length = 114
Score = 94 (38.1 bits), Expect = 0.00014, P = 0.00014
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 93 DDCFKCGRPGHWARDCP 109
++CFKCGR GHWAR+CP
Sbjct: 4 NECFKCGRSGHWARECP 20
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62
+K+M++ D+GR RGFGF+ Y + A+ EM+G+E R+I V +AQ ++
Sbjct: 220 VKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 95 (38.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 17 RDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
RD GFGF+ + D+R +DA+ +++G+E G + ++ ++P+ GG
Sbjct: 30 RDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGG 77
Score = 54 (24.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 26/66 (39%), Positives = 28/66 (42%)
Query: 190 RYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDR 249
R GG DR G G RG GAR S Y+ GG D R R P R SR R
Sbjct: 74 RGGGGDRGGFGGGG--RG-----GARVSS--YSGGGGGGRD-RFDRYDRGPPRRESRYGR 123
Query: 250 PSFDRY 255
P R+
Sbjct: 124 PYSTRH 129
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 95 (38.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 17 RDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
RD GFGF+ + D+R +DA+ +++G+E G + ++ ++P+ GG
Sbjct: 30 RDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGG 77
Score = 54 (24.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 26/66 (39%), Positives = 28/66 (42%)
Query: 190 RYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDR 249
R GG DR G G RG GAR S Y+ GG D R R P R SR R
Sbjct: 74 RGGGGDRGGFGGGG--RG-----GARVSS--YSGGGGGGRD-RFDRYDRGPPRRESRYGR 123
Query: 250 PSFDRY 255
P R+
Sbjct: 124 PYSTRH 129
>DICTYBASE|DDB_G0278349 [details] [associations]
symbol:tra2 "putative transformer-2 protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0278349 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 HSSP:P62995 KO:K12897 eggNOG:NOG297815
RefSeq:XP_642304.1 ProteinModelPortal:Q54Y98 PRIDE:Q54Y98
EnsemblProtists:DDB0233352 GeneID:8621510 KEGG:ddi:DDB_G0278349
OMA:GIHPRLT Uniprot:Q54Y98
Length = 326
Score = 97 (39.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 41/96 (42%), Positives = 46/96 (47%)
Query: 166 SKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKE-RGYERDVGAR--AGSDRYA 222
S YG DRY Y G GDRYG DR + YG++ RG +R G R G DRY
Sbjct: 218 SPYGGGDRYGRGDYGGRGG--GGDRYGRDDRGG-DRYGRDDRGGDR-YGGRDDRGGDRY- 272
Query: 223 SGGPARDDGRGYRSRAAPYDRPSRGDR---PSFDRY 255
GG RD+ G R Y R R DR S DRY
Sbjct: 273 -GG--RDERGGDRG-GDRYGRDDR-DRHREDSRDRY 303
Score = 91 (37.1 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 36/92 (39%), Positives = 37/92 (40%)
Query: 167 KYGSRDRYVSDRYPPAGDRLAG-DRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASG- 224
KY RY S R PP G DRYG D Y G G +R Y RD G DRY
Sbjct: 201 KYFGNPRYDSRRSPPRFSPYGGGDRYGRGD-YGGRGGGGDR-YGRD---DRGGDRYGRDD 255
Query: 225 -GPARDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
G R GR R R RG DRY
Sbjct: 256 RGGDRYGGRDDRGGDRYGGRDERGGDRGGDRY 287
Score = 52 (23.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 13 IMLERDSGRPRGFGFITYADRRAMDDAIR 41
++++R +GR + FGF+ + ++ +DA+R
Sbjct: 144 LIMDRKTGRSKCFGFVYFENK---EDAVR 169
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 102 (41.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
+IM + +GR RGFGF+T+ ++D + E GD+ + + +A+PK G
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTG 239
Score = 97 (39.2 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSD 68
D IM +R +G PRGFGF+T+AD + + E H DR + + + P+ G + +D
Sbjct: 94 DSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDH--VIDDRKVDLKRTLPR-GDKDTD 149
Score = 47 (21.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/83 (30%), Positives = 31/83 (37%)
Query: 167 KYGSRDRYVSDRYPPAGDRLAG-DRYGGSDRYPVN---------GYGKERGYERDVGARA 216
KY D Y S + +G YGG Y N GYG GY G +
Sbjct: 252 KYDQEDSY-SGKANEDYSMYSGYGGYGGYGAYAGNSMVNPAGFYGYGGGYGYGYGYGGQM 310
Query: 217 GSDRYASGGPARDDGRGYRSRAA 239
+ Y +GG + G GY AA
Sbjct: 311 FNMGYGAGGYSHM-GSGYGVAAA 332
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
LK++ +R+SG+P+GFGF Y D+ A+R ++G E G R + V+ A
Sbjct: 45 LKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLRVDNA 92
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 95 (38.5 bits), Expect = 0.00022, P = 0.00022
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62
+K+M + +SG+ +GFGF+++ A+ EM+G+E + I V +AQ K+
Sbjct: 18 VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 68
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 85 (35.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGF FIT+ + DA+R M+G+ R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMNGKSLDGRQIRVDHA 82
Score = 50 (22.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 23/61 (37%), Positives = 28/61 (45%)
Query: 199 VNGYGK-ERGYERDVGARA-GSDR-YASGGPARDDGRG-YRSRAAPYDRPSRGDRPSFDR 254
V+ GK RG R RA G R Y+ GG + G G Y S+ Y S + SFD
Sbjct: 79 VDHAGKLARG-TRGCAFRAHGRGRSYSRGGGDQGYGSGRYDSQPGGYGYGSGRSQDSFDH 137
Query: 255 Y 255
Y
Sbjct: 138 Y 138
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 100 (40.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF-GDRVISVNKAQPK 61
D +M +R +GR RGFG++T+A + +DA + G F G+R++ V A PK
Sbjct: 31 DCIVMKDRSTGRSRGFGYVTFA---SAEDAKNALKGEHFLGNRILEVKVATPK 80
Score = 48 (22.0 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 21/82 (25%), Positives = 28/82 (34%)
Query: 175 VSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 234
V+DR + G P++ G G + + GGP R GR Y
Sbjct: 293 VADRVARRSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMY 352
Query: 235 RSRAA-------PYDRPSRGDR 249
+ P RPSR DR
Sbjct: 353 GGMSLDDWGYGMPNARPSRPDR 374
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 82 (33.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ +M +R++ + RGF FIT+ A+R+M+G+ + I V +A
Sbjct: 35 SEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84
Score = 70 (29.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 204 KERGYERDV-GARAGSDRY--ASGGPARDDGRGYRSRAAPYD-RPSRGDRP 250
+ RG R + GAR G R + GGPA DDG GY A +D RPSR P
Sbjct: 100 RSRGRSRGLRGARGGGPRRPPSRGGPA-DDG-GY---AGDFDLRPSRAPLP 145
Score = 67 (28.6 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 33/94 (35%), Positives = 38/94 (40%)
Query: 163 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYA 222
S++ Y RD Y S Y A D A D + S R E Y RD G + D
Sbjct: 209 SREGGYSPRDGYSSRDYSSARD--ARD-FAPSPR--------EYTY-RDYGHSSARDECP 256
Query: 223 SGGPARDDGRGYRSRAAPYDRPSRGD-RPSFDRY 255
S G DG G R R D PS G R F+ Y
Sbjct: 257 SRGYGDRDGYGGRDRDYA-DHPSGGSYRDPFESY 289
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 91 (37.1 bits), Expect = 0.00031, P = 0.00031
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISV 55
D +M +R + R RGFGF+TY+ + A+ M G+E R +SV
Sbjct: 31 DAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSV 76
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 79 (32.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
D+ I E + PRGF F+ + DRR DA M G E R + V A+
Sbjct: 42 DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91
Score = 69 (29.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 28/90 (31%), Positives = 36/90 (40%)
Query: 166 SKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARA----GSDRY 221
S Y SR RY R P + R RYGGS Y +GY R Y R +R+ GS
Sbjct: 163 SPY-SRSRY--SRSPYSRSRYRESRYGGS-HYSSSGYSNSR-YSRYHSSRSHSKSGSSTS 217
Query: 222 ASGGPARDDGRGYRSRAAPYDRPSRGDRPS 251
+ RS+++ R R S
Sbjct: 218 SRSASTSKSSSARRSKSSSVSRSRSRSRSS 247
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 85 (35.0 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 58 (25.5 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+ +GF+ D+ A +DAIR +H + I+V ++ K
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 73
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 12/28 (42%), Positives = 12/28 (42%)
Query: 191 YGGSDRYPVNGYGKERGYERDVGARAGS 218
YG S Y N YG Y V A A S
Sbjct: 205 YGDSLYYN-NAYGALDAYYEAVAAAAAS 231
Score = 36 (17.7 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 198 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRA 238
P G G G+E ++ + + R + AR + Y RA
Sbjct: 311 PTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 351
>ZFIN|ZDB-GENE-060629-1 [details] [associations]
symbol:eif4ba "eukaryotic translation initiation
factor 4Ba" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060629-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
EMBL:BX511107 IPI:IPI00861203 Ensembl:ENSDART00000087899
Bgee:F1QNK2 Uniprot:F1QNK2
Length = 615
Score = 105 (42.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 35/86 (40%), Positives = 43/86 (50%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRY-GGSDRYPVNGYGKER-GYERDVGARAGSDRYASGGPA 227
S+DRY SDR+ G R DRY GG DRY +ER Y+R +R+G R G
Sbjct: 226 SKDRYDSDRHRE-GQRWDNDRYDGGRDRYRERYDDRERRDYDRGFDSRSGGRRPFGSGFR 284
Query: 228 RD-DGR--GYRSRAAPY-DRPSRGDR 249
RD D R +R Y DR R +R
Sbjct: 285 RDYDDRRDDFRGSGDRYGDREERFER 310
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 13 IMLERDSGRP---RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSD 68
+ L R+ P +GFG+ + D ++ A+ ++ G+R I V+ A E D
Sbjct: 123 VRLPREPSNPERLKGFGYAEFDDVESLLQAL-SLNEENLGNRRIRVDIADQSNEKERDD 180
>UNIPROTKB|F1S187 [details] [associations]
symbol:LOC100518332 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360
SMART:SM00547 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GeneTree:ENSGT00530000063105
EMBL:CU896616 Ensembl:ENSSSCT00000019273 OMA:TESSSGX Uniprot:F1S187
Length = 406
Score = 85 (35.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 34/74 (45%), Positives = 36/74 (48%)
Query: 183 GDRLAGDRYGGSDRYPVNGYGKERG--YERDVGARAGSDRYASGGPARDDGRGYRS-RAA 239
GDR +G YGG DR GYG +RG Y D G G DR SGG D G GY R
Sbjct: 251 GDR-SGGGYGG-DRG--GGYGGDRGGGYGGDRGGGYGGDR--SGGYGGDRGGGYGGDRGG 304
Query: 240 PY--DRPSR--GDR 249
Y DR GDR
Sbjct: 305 GYGGDRGGGYGGDR 318
Score = 82 (33.9 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 32/80 (40%), Positives = 36/80 (45%)
Query: 169 GSRDRYVSDRYPPA--GDRLAGDRYGGSDRYPVNGYGKER---GYERDVGARAGSDRYAS 223
G R Y DR GDR +G YGG DR GYG +R GY D G DR
Sbjct: 331 GDRGGYGGDRSGGGYGGDRGSGSGYGG-DRS--GGYGGDRSGGGYGGDRSGGYGGDRGGY 387
Query: 224 GGP--ARDDGRGYRSRAAPY 241
GG R+D R + R PY
Sbjct: 388 GGKMGGRNDYRNDQ-RNRPY 406
Score = 66 (28.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ + ++D+G+P+G +++ D + AI G+EF +I V+ A
Sbjct: 74 INLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFA 121
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 82 (33.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 13 IMLERD--SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISV 55
+ + RD SG+PRGF F+ + D +A R M+ R F R I+V
Sbjct: 76 VYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120
Score = 64 (27.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 29/81 (35%), Positives = 32/81 (39%)
Query: 170 SRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYERDVGARAGSDRYASGGPAR 228
SR RY S Y PA R G G D Y Y GYE A A DR +G
Sbjct: 172 SRSRYRSRSYSPAPRRRGGPPRGEEDENYSRRSYSP--GYEG--AAAAAPDRDRNGDNEI 227
Query: 229 DDGRGYRSRAAPYDRPSRGDR 249
+ GY + DR RG R
Sbjct: 228 REKPGYEAE----DR-RRGGR 243
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 113 (44.8 bits), Expect = 0.00036, P = 0.00036
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62
+K+M++ +SGR RGFGF+ Y + A+ EM+G+E R++ V +AQ ++
Sbjct: 220 VKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRI 270
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 76 (31.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 169 GSRDRYVSDRYPPAG----DRLAGDRYGG------SDRYPVNGYGKERGYERDVGARAGS 218
G DR DR +G +R G +GG +DR GYG +R D G G
Sbjct: 244 GGNDR---DRRESSGGFRDNRGGGGGFGGGGRDRFNDRSGGGGYGGDRDRGGDRGGDRGG 300
Query: 219 DRYASGGPARDDGRGYRS 236
RY++GG + G GYRS
Sbjct: 301 SRYSTGGGS---GGGYRS 315
Score = 74 (31.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 14 MLERDSGRPRGFGFITYADRRAMDDAIREMHGREF-GDRVI 53
M+ ++G+PRG+ FI Y+D+ M A ++ G + G R++
Sbjct: 135 MVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLV 175
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 85 (35.0 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 59 (25.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
+ +GF+ D+ A +DAIR +H + I+V ++ K H
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLH 81
Score = 35 (17.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 189 DRYGGSDRYPVN-GYGKERGYERDVGARAGSDRY 221
++YG R P GYG+ Y GA RY
Sbjct: 192 EQYGAV-RTPYTMGYGESMYYNDAYGALDYYKRY 224
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 85 (35.0 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 59 (25.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
+ +GF+ D+ A +DAIR +H + I+V ++ K H
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLH 81
Score = 35 (17.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 189 DRYGGSDRYPVN-GYGKERGYERDVGARAGSDRY 221
++YG R P GYG+ Y GA RY
Sbjct: 192 EQYGAV-RTPYTMGYGESMYYNDAYGALDYYKRY 224
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 85 (35.0 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 59 (25.8 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
+ +GF+ D+ A +DAIR +H + I+V ++ K H
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLH 81
Score = 35 (17.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 189 DRYGGSDRYPVN-GYGKERGYERDVGARAGSDRY 221
++YG R P GYG+ Y GA RY
Sbjct: 192 EQYGAV-RTPYTMGYGESMYYNDAYGALDYYKRY 224
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 85 (35.0 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 59 (25.8 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
+ +GF+ D+ A +DAIR +H + I+V ++ K H
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLH 81
Score = 35 (17.4 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 189 DRYGGSDRYPVN-GYGKERGYERDVGARAGSDRY 221
++YG R P GYG+ Y GA RY
Sbjct: 192 EQYGAV-RTPYTMGYGESMYYNDAYGALDYYKRY 224
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 85 (35.0 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 59 (25.8 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
+ +GF+ D+ A +DAIR +H + I+V ++ K H
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLH 81
Score = 35 (17.4 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 189 DRYGGSDRYPVN-GYGKERGYERDVGARAGSDRY 221
++YG R P GYG+ Y GA RY
Sbjct: 192 EQYGAV-RTPYTMGYGESMYYNDAYGALDYYKRY 224
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 85 (35.0 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 59 (25.8 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
+ +GF+ D+ A +DAIR +H + I+V ++ K H
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLH 81
Score = 35 (17.4 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 189 DRYGGSDRYPVN-GYGKERGYERDVGARAGSDRY 221
++YG R P GYG+ Y GA RY
Sbjct: 192 EQYGAV-RTPYTMGYGESMYYNDAYGALDYYKRY 224
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 108 (43.1 bits), Expect = 0.00044, P = 0.00044
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+ +++ +RDSGR +GFGF+TY + + +AI+ + G + R I V++A+ +
Sbjct: 232 EARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 85 (35.0 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 58 (25.5 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+ +GF+ D+ A +DAIR +H + I+V ++ K
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 73
Score = 36 (17.7 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 198 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRA 238
P G G G+E ++ + + R + AR + Y RA
Sbjct: 319 PTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 359
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 85 (35.0 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 58 (25.5 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+ +GF+ D+ A +DAIR +H + I+V ++ K
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 73
Score = 36 (17.7 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 198 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRA 238
P G G G+E ++ + + R + AR + Y RA
Sbjct: 319 PTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 359
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 108 (43.1 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65
+++ +R++G+P+G+GF Y D+ A+R ++GREF R + V+ A + E
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
Score = 38 (18.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 217 GSDRYASG-GPARDDGRGYRSRAAPYDRPSRGDRP 250
G+ + G GP G G ++ P + PS +P
Sbjct: 203 GNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQP 237
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 85 (35.0 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 58 (25.5 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+ +GF+ D+ A +DAIR +H + I+V ++ K
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 73
Score = 36 (17.7 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 198 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRA 238
P G G G+E ++ + + R + AR + Y RA
Sbjct: 320 PTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 360
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 108 (43.1 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65
+++ +R++G+P+G+GF Y D+ A+R ++GREF R + V+ A + E
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
Score = 41 (19.5 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 182 AGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAP 240
AG + AG + G + G G + G + G + G + A A G G S +P
Sbjct: 519 AGIQGAGMQGAGMQGGGMQGAGMQGGGMQGAGMQGGGMQGAGMQGASKQGAGQPSSFSP 577
>UNIPROTKB|F1PB61 [details] [associations]
symbol:TAF15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 CTD:8148 KO:K14651
OMA:YGNQGSQ EMBL:AAEX03006620 EMBL:AAEX03006619 RefSeq:XP_548255.2
ProteinModelPortal:F1PB61 Ensembl:ENSCAFT00000028877 GeneID:491135
KEGG:cfa:491135 Uniprot:F1PB61
Length = 571
Score = 87 (35.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 39/100 (39%), Positives = 42/100 (42%)
Query: 169 GSRDRYVSDRYPPA--GDRLAGDRYGGSDRYPVNGYGKER---GYERDVGARAGSDR--- 220
G R Y +DR GDR G YGG DR GYG +R GY D G G DR
Sbjct: 412 GDRGGYGADRSSGGYGGDRSGGGGYGG-DRSG-GGYGGDRSGGGYGGDRGGGYGGDRGGG 469
Query: 221 YAS---GGPARDDGRGYRS-RAAPY--DRPSR--GDRPSF 252
Y GG D G GY R Y DR GDR +
Sbjct: 470 YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGY 509
Score = 66 (28.3 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ + ++D+G+P+G +++ D + AI G+EF +I V+ A
Sbjct: 270 INLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFA 317
>TAIR|locus:2047092 [details] [associations]
symbol:GRP2B "glycine-rich protein 2B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0009409 GO:GO:0008270 GO:GO:0003723 GO:GO:0009790
GO:GO:0010154 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
InterPro:IPR019844 EMBL:AC006264 eggNOG:COG1278
ProtClustDB:CLSN2683565 EMBL:U39072 EMBL:AY057693 EMBL:BT021142
IPI:IPI00516457 PIR:F84596 RefSeq:NP_179702.1 UniGene:At.1680
ProteinModelPortal:Q38896 SMR:Q38896 PaxDb:Q38896 PRIDE:Q38896
EnsemblPlants:AT2G21060.1 GeneID:816641 KEGG:ath:AT2G21060
TAIR:At2g21060 InParanoid:Q38896 OMA:CFKCGEP PhylomeDB:Q38896
Genevestigator:Q38896 GermOnline:AT2G21060 Uniprot:Q38896
Length = 201
Score = 88 (36.0 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 90 GGQDDCFKCGRPGHWARDC 108
GG + CFKCG PGH AR+C
Sbjct: 133 GGDNSCFKCGEPGHMAREC 151
Score = 39 (18.8 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 23 RGFGFITYAD 32
+GFGFIT +D
Sbjct: 26 KGFGFITPSD 35
Score = 37 (18.1 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 217 GSDRYASGGPARDDGRG 233
G RY SGG G G
Sbjct: 163 GGGRYGSGGGGGGGGGG 179
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 91 (37.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 13 IMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+M E+ +GRPRGFGF+ ++D +D +++ H +R + V +A +
Sbjct: 37 VMREKATGRPRGFGFVAFSDPAVIDRVLQDKH--HIDNRDVDVKRAMSR 83
Score = 57 (25.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 19/62 (30%), Positives = 24/62 (38%)
Query: 165 DSKYGSRDRYVSDRYPPAGDRLAGDRYG-GSDRYPVNGYGKERGYERDVGARAGSDRYAS 223
DS + + YPP G G YG GS+ G+G GY GA G+
Sbjct: 224 DSNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGFG---GYGNPAGAPYGNPSVPG 280
Query: 224 GG 225
G
Sbjct: 281 AG 282
>UNIPROTKB|Q92804 [details] [associations]
symbol:TAF15 "TATA-binding protein-associated factor 2N"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471147 eggNOG:NOG240581 HOGENOM:HOG000038010 EMBL:AC015849
EMBL:U51334 EMBL:X98893 EMBL:AB010067 EMBL:AY197697 EMBL:AK313223
IPI:IPI00020194 IPI:IPI00294426 PIR:S71954 RefSeq:NP_003478.1
RefSeq:NP_631961.1 UniGene:Hs.402752 ProteinModelPortal:Q92804
SMR:Q92804 IntAct:Q92804 STRING:Q92804 PhosphoSite:Q92804
DMDM:8928305 PaxDb:Q92804 PRIDE:Q92804 DNASU:8148
Ensembl:ENST00000311979 GeneID:8148 KEGG:hsa:8148 UCSC:uc002hkc.3
UCSC:uc002hkd.3 CTD:8148 GeneCards:GC17P034136 HGNC:HGNC:11547
HPA:HPA052059 MIM:601574 neXtProt:NX_Q92804 PharmGKB:PA36322
HOVERGEN:HBG005755 InParanoid:Q92804 KO:K14651 OMA:YGNQGSQ
OrthoDB:EOG4MW872 PhylomeDB:Q92804 ChiTaRS:TAF15 GenomeRNAi:8148
NextBio:30819 PMAP-CutDB:Q92804 ArrayExpress:Q92804 Bgee:Q92804
CleanEx:HS_TAF15 Genevestigator:Q92804 GermOnline:ENSG00000172660
Uniprot:Q92804
Length = 592
Score = 87 (35.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 33/80 (41%), Positives = 36/80 (45%)
Query: 169 GSRDRYVSDRYPPA--GDRLAGDRYGGSDRYPVNGYGKER---GYERDVGARAGSDRYAS 223
G R Y DR GDR G YGG DR GYG +R GY D G G DR
Sbjct: 517 GDRGGYGGDRSRGGYGGDRGGGSGYGG-DRS--GGYGGDRSGGGYGGDRGGGYGGDRGGY 573
Query: 224 GGP--ARDDGRGYRSRAAPY 241
GG R+D R + R PY
Sbjct: 574 GGKMGGRNDYRNDQ-RNRPY 592
Score = 86 (35.3 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 39/92 (42%), Positives = 41/92 (44%)
Query: 168 YGSRDR---YVSDRYPPAGDR---LAGDRYG-GSDRYPVNGYGKERG-YERDVGARAGSD 219
YG DR Y DR GDR GDR G G DR GYG +RG Y D G G D
Sbjct: 471 YGG-DRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDR---GGYGGDRGGYGGDRGGYGG-D 525
Query: 220 RYASG-GPARDDGRGYRS-RAAPY--DRPSRG 247
R G G R G GY R+ Y DR G
Sbjct: 526 RSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGG 557
Score = 85 (35.0 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 38/95 (40%), Positives = 42/95 (44%)
Query: 168 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERG--YERDVGARAGSDR---YA 222
YG DR Y +GDR +G YGG DR GYG +RG Y D G G DR Y
Sbjct: 427 YGG-DRSSGGGY--SGDR-SGGGYGG-DRSG-GGYGGDRGGGYGGDRGGGYGGDRGGGYG 480
Query: 223 S--GGPARDDGRGYRSRAAPY--DRPSRG-DRPSF 252
GG D G GY Y DR G DR +
Sbjct: 481 GDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGY 515
Score = 66 (28.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ + ++D+G+P+G +++ D + AI G+EF +I V+ A
Sbjct: 271 INLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFA 318
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 104 (41.7 bits), Expect = 0.00053, P = 0.00053
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 11 LKIMLERD-SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62
L + + RD +G+ +GFGF++Y + A+ EM+G+E ++I V +AQ K+
Sbjct: 131 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 183
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 89 (36.4 bits), Expect = 0.00053, P = 0.00053
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 17 RDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64
RD RGFGF+ + D R DDA+ E+ G+E +++ A+ + G
Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRG 78
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 85 (35.0 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 58 (25.5 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+ +GF+ D+ A +DAIR +H + I+V ++ K
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 73
Score = 35 (17.4 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 198 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRA 238
P G G G+E ++ + + R + AR + Y RA
Sbjct: 317 PTVGEGYGYGHESELSQGSSAARNSLYDMARYEREQYADRA 357
>UNIPROTKB|D3ZZM1 [details] [associations]
symbol:Taf15 "Protein Taf15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
RGD:1309595 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:AC119615 IPI:IPI00950003
ProteinModelPortal:D3ZZM1 Ensembl:ENSRNOT00000064396
ArrayExpress:D3ZZM1 Uniprot:D3ZZM1
Length = 558
Score = 86 (35.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 36/93 (38%), Positives = 40/93 (43%)
Query: 169 GSRDRYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKER---GYERDVGARAGSDRYA 222
G R Y +DR +G GDR GGS DR GYG +R GY D G G DR
Sbjct: 411 GDRGGYGADR---SGGGYGGDRSGGSYGADRSG-GGYGGDRSGGGYGGDRGGGYGGDRGG 466
Query: 223 SGGPARDDGRGYRSRAAPY--DRPSRG-DRPSF 252
GG D G Y Y DR G DR +
Sbjct: 467 YGG---DRGGSYGGDRGGYGGDRGGYGGDRGGY 496
Score = 66 (28.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+ + ++D+G+P+G +++ D + AI G+EF +I V+ A
Sbjct: 269 INLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFA 316
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 82 (33.9 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 34 EVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
Score = 53 (23.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 184 DRLAGDRYGG--SDRYPVNGYGKERGY-ERDVGARAGSDRYASGG 225
D +G YGG D Y G+E Y +R G R+ D Y S G
Sbjct: 123 DNRSGGGYGGWIPDYY---SSGRESSYGDRSAGGRSYRDSYDSYG 164
Score = 52 (23.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 188 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 241
G YGGS R+ G G+ D + S R +S G GR YR Y
Sbjct: 113 GGGYGGSSRFDNRSGGGYGGWIPDYYS---SGRESSYGDRSAGGRSYRDSYDSY 163
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 98 (39.6 bits), Expect = 0.00063, P = 0.00063
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN--KAQPKMGG 64
+ +I+++R S R +GFGF+T+A A+ E +G++ R I V+ KA+ +GG
Sbjct: 62 EAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGG 118
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 77 (32.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 33/81 (40%), Positives = 37/81 (45%)
Query: 175 VSDRYPPAGDRLAGDRYG-GSDRYPVNGYGKERGYERDVG-ARAGSDRYASGGPARDDGR 232
V D P GD G +G G+ R+ G G RG RD G R GS GG RD GR
Sbjct: 475 VVDEPRPRGDSSGGGGFGRGNGRF---GSGGGRG--RDGGRGRFGS----GGGRGRDGGR 525
Query: 233 G-YRSRAAPYDRPSRGDRPSF 252
G + S RG RPSF
Sbjct: 526 GRFGSGGGRGSDRGRG-RPSF 545
Score = 76 (31.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D++ RD G RGFG + +A A+ E HGR R I ++ AQ +
Sbjct: 325 DVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EFHGRPLLGREIRLDIAQER 375
>UNIPROTKB|G4NKC1 [details] [associations]
symbol:MGG_03086 "U2 snRNP component IST3" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
KEGG:mgr:MGG_03086 Uniprot:G4NKC1
Length = 330
Score = 99 (39.9 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHX 70
LK++ ++++G+ RGFG++ Y D+R+ D A+ + G DR++ V+ A+ K + D
Sbjct: 62 LKLVRDKETGKSRGFGWLKYEDQRSTDLAVDNLGGAVIKDRMMRVDHARYKGRDDEDDDE 121
Query: 71 XXXXXXXXXXXXXXXADRPGGQDDCFKCGRP 101
+ D+ K RP
Sbjct: 122 FKVGWEDMMRKQGQVVEEEDDDDETDKVARP 152
Score = 43 (20.2 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 204 KERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRPSFDR 254
K++ RD +R D RDD +RS+ + DR DR
Sbjct: 253 KDKDKHRDSDSRRRDDSKDRRRRERDDDGHHRSKDRGRENSRDRDRDRHDR 303
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 83 (34.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++A
Sbjct: 33 SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
Score = 54 (24.1 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 163 SKDSKY-GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGK 204
S+ Y GSRD Y S GDR +G Y D Y + YGK
Sbjct: 130 SRSGGYNGSRDYYNSRSQGGYGDRSSGGSY--RDSY--DSYGK 168
>FB|FBgn0016978 [details] [associations]
symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
"U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
"protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
Length = 448
Score = 76 (31.8 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 12 KIML--ERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDR--VISVNKAQPKMG 63
KI+L +++SG+P+G+ FI Y R M A + G++ + ++ V +A+ G
Sbjct: 130 KIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKG 185
Score = 74 (31.1 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 28/88 (31%), Positives = 37/88 (42%)
Query: 171 RDRYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGARAGSDRYASGGPA 227
R+RY +R DR R GGS D P G+G ER R R +R G
Sbjct: 219 RERYRLER--EREDREGPGRGGGSNGLDARPGRGFGAERRRSRS-RERRDRERDRGRGAV 275
Query: 228 RDDGRGYRSRAAPYDRPSRGDRPSFDRY 255
+GR RSR+ + G R +D +
Sbjct: 276 ASNGRS-RSRSRERRKRRAGSRERYDEF 302
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 108 (43.1 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65
+++ +R++G+P+G+GF Y D+ A+R ++GREF R + V+ A + E
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
Score = 38 (18.4 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 217 GSDRYASG-GPARDDGRGYRSRAAPYDRPSRGDRP 250
G+ + G GP G G ++ P + PS +P
Sbjct: 203 GNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQP 237
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 105 (42.0 bits), Expect = 0.00082, P = 0.00082
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
+++ + D+GR RG+GF+ Y+ + M+ A+ + G E R I VN AQ K
Sbjct: 207 RVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 108 (43.1 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65
+++ +R++G+P+G+GF Y D+ A+R ++GREF R + V+ A + E
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
Score = 38 (18.4 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 217 GSDRYASG-GPARDDGRGYRSRAAPYDRPSRGDRP 250
G+ + G GP G G ++ P + PS +P
Sbjct: 203 GNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQP 237
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 108 (43.1 bits), Expect = 0.00089, P = 0.00089
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65
+++ +R++G+P+G+GF Y D+ A+R ++GREF R + V+ A + E
Sbjct: 50 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 103
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 108 (43.1 bits), Expect = 0.00090, P = 0.00090
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65
+++ +R++G+P+G+GF Y D+ A+R ++GREF R + V+ A + E
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 81 (33.6 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G + C++CG+ GHW+++CP
Sbjct: 157 GDKSGCYRCGKEGHWSKECP 176
Score = 63 (27.2 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
+ +GF+ D+ A +DAIR +H + I+V ++ K H
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHHKLHGVCINVEASKNKSKASTKLH 81
>UNIPROTKB|F1RUT8 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
Length = 359
Score = 85 (35.0 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 90 GGQDDCFKCGRPGHWARDCP 109
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 60 (26.2 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 17/74 (22%), Positives = 28/74 (37%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHXXXXXXXXXXXXX 82
+ +GF+ D+ A +DAIR +H + I+V ++ K H
Sbjct: 35 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQEL 94
Query: 83 XXXADRPGGQDDCF 96
+ GG CF
Sbjct: 95 RAKFEAYGGLLRCF 108
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 103 (41.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 4 CLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
C ++ D ++M ++ +GR RGFGF+++ +++ AI EM+G+ R I N A
Sbjct: 174 CSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 40 (19.1 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 213 GARAGSDRYASGGPA--------RDDGRGYRSRAAPYDRP 244
GA G D+++S G + +DGR + AP + P
Sbjct: 231 GATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNP 270
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.140 0.446 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 255 186 0.00083 110 3 11 22 0.48 32
31 0.41 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 155
No. of states in DFA: 580 (62 KB)
Total size of DFA: 165 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.26u 0.14s 16.40t Elapsed: 00:00:01
Total cpu time: 16.28u 0.15s 16.43t Elapsed: 00:00:01
Start: Mon May 20 21:03:37 2013 End: Mon May 20 21:03:38 2013
WARNINGS ISSUED: 1