BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025249
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
D KI+ +R+SGR RGFGF+T+ D +AM DAI EM+G+E RVI+VN+AQ
Sbjct: 34 DSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
D KI+ +R++GR RGFGF+T+ D ++M DAI EM+G+E R I+VN+AQ
Sbjct: 34 DSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQS 84
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
D K++ +R++GR RGFGF+T++ ++M DAI M+G+E R I+VN+AQ
Sbjct: 36 DSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQS 86
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
D K++ +R++GR RGFGF+T++ +M DAI M+G+E R I+VN+AQ
Sbjct: 36 DSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQS 86
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
D KI+ +R++GR RGFGF+T+ D +AM DAI M+G++ R I+VN+AQ
Sbjct: 36 DSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 1 MQQCLTHNNDL---KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 57
++Q + D+ KI+ +R++GR RGFGF+T+ D ++M DAI M+G+E R I+VN+
Sbjct: 22 LEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNE 81
Query: 58 AQP 60
AQ
Sbjct: 82 AQS 84
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
D KI+ +R++GR RGFGF+T+ D ++M DAI M+G++ R I+VN+AQ
Sbjct: 36 DSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
D KI+ +R++GR RGFGF+T+ D ++M DAI M+G++ R I+VN+AQ
Sbjct: 36 DSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
GN=GRP1 PE=2 SV=1
Length = 142
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
KI+L+R++ R RGFGF+T++ AM AI M+G+E R I+VN+AQ
Sbjct: 17 KIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQS 65
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D KI+ +R++GR RGFGF+T+A AM AI M+G++ R I+VN+AQ +
Sbjct: 34 DSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
D +++L+R++GR RGFGF+T+ A AI+ + GR+ RV+ VN A
Sbjct: 68 DTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 24/89 (26%)
Query: 21 RPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGG 80
+P GF FI + DRR +DAIR++ G+ +G+R + G
Sbjct: 36 KPPGFAFIDFDDRRDAEDAIRDLDGK----------------------NGWRVELSTKAG 73
Query: 81 RGSYGADRPGGQD-DCFKCGRPGHWARDC 108
G G DR GG D C++CG PGH+AR+C
Sbjct: 74 SGR-GRDRSGGSDMKCYECGEPGHFAREC 101
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 109/284 (38%), Gaps = 59/284 (20%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ---------- 59
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 60 ------------------------PKMGGEVSDHGYRGGGYSSGGRGSYGADRPGGQDDC 95
P GG + D GY S RG +
Sbjct: 96 PPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSSRGPLPV-----KRGP 150
Query: 96 FKCGRPGHWARDCPS----AVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDDRYD 151
R PS + G GG R +GG R + L RD Y+ R D
Sbjct: 151 PPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGP-PRREPLPSRRDVYLSPRDD 209
Query: 152 GGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR--YPVNGYGKERGYE 209
G Y +D Y S+D SRD D PP D D S R YP GYG GY
Sbjct: 210 G--YSTKDSYSSRDYP-SSRD--TRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYG 264
Query: 210 RDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
RD R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 265 RD---RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 301
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D K++ +RDSGR RGFGF+TY+ + ++DAI ++G + R I V+ A+ +
Sbjct: 235 DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH- 69
++++ ++ +GR RGFGF+T + + ++ A ++ +G E R I VN E S
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFG 175
Query: 70 GYRGGGYSSGG 80
G RGG S GG
Sbjct: 176 GGRGGNSSYGG 186
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIRE----MHGREFGDRVISVNKAQPKMGGE 65
D +M+++D+GRPRGFGF+TY + A++ + + +HG + + V +A PK
Sbjct: 275 DATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHG-----KPVEVKRATPKASLR 329
Query: 66 VS----DHGYRGGG--YSSGGRGSYGADRPGGQDDCFKCGRPGHWA-RDCPSAVGG 114
S HGY G Y + YG P ++ + A R+ P+A G
Sbjct: 330 DSHDRHQHGYHGNANPYYAQNMNMYGGMTPAMMAQYYRQMQQYMEAMRNMPAAAGA 385
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 69
D +M + +GR RGFGF+T+ + + +++ + + H ++I +A P+ E +
Sbjct: 191 DCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAIPREEQEKTAK 248
Query: 70 GYRGG 74
+ GG
Sbjct: 249 MFVGG 253
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D K++ +RDSGR RGFGF+TY+ + ++DAI ++G + R I V+ A+ +
Sbjct: 236 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH- 69
++++ ++ SGR RGFGF+T + + ++ A ++ +G E R I VN E S
Sbjct: 117 VEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFG 176
Query: 70 GYRGGGYSSGG 80
G RGG S GG
Sbjct: 177 GGRGGNSSYGG 187
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
D K++++R++GR RGFGF+ + D A AI EM G+E R I VN A
Sbjct: 63 DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 108/284 (38%), Gaps = 59/284 (20%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ---------- 59
++ +M +R++ + RGF F+T+ D R+M+G+ + I V +A
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 60 ------------------------PKMGGEVSDHGYRGGGYSSGGRGSYGADRPGGQDDC 95
P GG + D GY S RG +
Sbjct: 96 PPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSSRGPLPV-----KRGP 150
Query: 96 FKCGRPGHWARDCPS----AVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDDRYD 151
R PS + G GG R +GG R + L RD Y+ R D
Sbjct: 151 PPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPRR-EPLPSRRDVYLSPRDD 209
Query: 152 GGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR--YPVNGYGKERGYE 209
G Y +D Y S+D SRD D PP D D S R YP GYG GY
Sbjct: 210 G--YSTKDSYSSRDYP-SSRD--TRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYG 264
Query: 210 RDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
RD R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 265 RD---REYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 301
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 15 LERDS-GRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
LE+D+ G+P+GFGF+ + D A A+ E++G+EF + + V +AQ K
Sbjct: 262 LEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKK 309
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHG 70
+++ +R++GR RGFGF+ A D AI+ + G E+ RV+ VNKA+P+ + G
Sbjct: 30 VQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARPR-----EEKG 84
Query: 71 YRGGG 75
R GG
Sbjct: 85 ARSGG 89
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 6 THNNDLKIMLER-----DSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
T DL+ + R D R + F+ ++D R DDA + GR+F
Sbjct: 22 TRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD----------- 70
Query: 61 KMGGEVSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDC 108
G ++ RG S GS G P G CF CG GHWARDC
Sbjct: 71 --GSRITVEASRGAPRGSRDNGSRGP--PPGSGRCFNCGVDGHWARDC 114
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1 MQQCLT---HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 57
++Q T + ++ +R++GR RGFGF++++ + ++AI+EM G+E R I VN
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 58 AQPK 61
A +
Sbjct: 111 ATER 114
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 107/284 (37%), Gaps = 59/284 (20%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ---------- 59
++ +M +R++ + RGF F+T+ D R+M+G+ + I V +A
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 60 ------------------------PKMGGEVSDHGYRGGGYSSGGRGSYGADRPGGQDDC 95
P GG + D GY S RG +
Sbjct: 96 PPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSSRGPLPV-----KRGP 150
Query: 96 FKCGRPGHWARDCPS-AVGGRGGAGGSFSS---RSRFGGVGVRGDYLGGGRDRYIDDRYD 151
R PS V G GG R +GG R + L RD Y+ R D
Sbjct: 151 PPRSGGPPPKRSTPSGPVRSSSGMGGRMPVSRGRDSYGGPPRR-EPLPSRRDVYLSPRDD 209
Query: 152 GGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR--YPVNGYGKERGYE 209
G Y +D Y S+D SRD D PP D D S R YP GYG GY
Sbjct: 210 G--YSTKDSYSSRD-YLSSRD--TRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYG 264
Query: 210 RDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
RD R SD + SGG RD Y S +AP P+RG PS+
Sbjct: 265 RD---REYSD-HPSGGSYRDSYESYGNSCSAP---PTRGPPPSY 301
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
D K++ +RDSGR RGFGF+TY+ +++AI + G + R I V+ A+
Sbjct: 216 DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
++++ ++ +GR RGFGF+T + + ++ A ++ +G E R + VN P
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 165
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
D K++ +RDSGR RGFGF+TY+ +++AI + G + R I V+ A+
Sbjct: 222 DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
++++ ++ +GR RGFGF+T + + ++ A ++ +G E R + VN P
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 165
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62
+K+M++ DSGR RGFGF+ Y + A+ EM+G+E R+I V +AQ ++
Sbjct: 220 VKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 111/288 (38%), Gaps = 64/288 (22%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA-QPKM------ 62
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A +P
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 63 ------------------------------GGEVSDHGYRGGGYSSGGRGSYGADRPGGQ 92
GG + D GY S RG +
Sbjct: 96 PPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPV-----K 150
Query: 93 DDCFKCGRPGHWARDCPS----AVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDD 148
R PS + G GG R +GG R + L RD Y+
Sbjct: 151 RGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRR-EPLPSRRDVYLSP 209
Query: 149 RYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKE 205
R DG Y +D Y S+D SRD D PP D D YG S D YP GY
Sbjct: 210 RDDG--YSTKDSYSSRDYP-SSRD--TRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDR 263
Query: 206 RGYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
GY RD R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 264 DGYGRD---RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 111/288 (38%), Gaps = 64/288 (22%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA-QPKM------ 62
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A +P
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 63 ------------------------------GGEVSDHGYRGGGYSSGGRGSYGADRPGGQ 92
GG + D GY S RG +
Sbjct: 96 PPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPV-----K 150
Query: 93 DDCFKCGRPGHWARDCPS----AVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDD 148
R PS + G GG R +GG R + L RD Y+
Sbjct: 151 RGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRR-EPLPSRRDVYLSP 209
Query: 149 RYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKE 205
R DG Y +D Y S+D SRD D PP D D YG S D YP GY
Sbjct: 210 RDDG--YSTKDSYSSRDYP-SSRD--TRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDR 263
Query: 206 RGYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
GY RD R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 264 DGYGRD---RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 111/288 (38%), Gaps = 64/288 (22%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA-QPKM------ 62
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A +P
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 63 ------------------------------GGEVSDHGYRGGGYSSGGRGSYGADRPGGQ 92
GG + D GY S RG +
Sbjct: 96 PPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPV-----K 150
Query: 93 DDCFKCGRPGHWARDCPS----AVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDD 148
R PS + G GG R +GG R + L RD Y+
Sbjct: 151 RGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGP-PRREPLPSRRDVYLSP 209
Query: 149 RYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKE 205
R DG Y +D Y S+D SRD D PP D D YG S D YP GY
Sbjct: 210 RDDG--YSTKDSYSSRDYP-SSRD--TRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDR 263
Query: 206 RGYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
GY RD R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 264 DGYGRD---RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62
+K+M++ D+GR RGFGF+ Y + A+ EM+G+E R+I V +AQ ++
Sbjct: 220 VKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 21 RPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGG 80
+P GF FI + DRR DAIR++ G+ G RV E+S R GG
Sbjct: 36 KPPGFAFIDFDDRRDAQDAIRDIDGKN-GWRV------------ELS----RNASSGRGG 78
Query: 81 RGSYGADRPGGQDDCFKCGRPGHWARDC 108
R YG+ + C++CG GH+AR+C
Sbjct: 79 RDRYGS----SESKCYECGETGHFAREC 102
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 21 RPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGG 80
+P GF FI + D+R +DA+R++ G+ +S N + S GG
Sbjct: 36 KPPGFAFIDFDDKRDAEDALRDLDGKNGWRVELSRNSS------------------SRGG 77
Query: 81 RGSYGADRPGGQDDCFKCGRPGHWARDCPSAVG 113
R +G G + C++CG GH+AR+C +G
Sbjct: 78 RDRHG----GSEMKCYECGETGHFARECRLRIG 106
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
D ++L+R+SG RGFGF+TY ++A++ M +E R+I V+ A
Sbjct: 64 DAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 65 EVSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPSAVGGRGGAGGSFSS 124
E ++ YR G + AD P C++C + GHW R+CP AV RG S
Sbjct: 72 EEAERCYRCNGIGHISKDCTQADNP----TCYRCNKTGHWVRNCPEAVNERGPTNVSCYK 127
Query: 125 RSRFGGV 131
+R G +
Sbjct: 128 CNRTGHI 134
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D ++ML++D+G+ RGFGF+TY A+D + +F DR I + +A+P+
Sbjct: 271 DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKF-IDFKDRKIEIKRAEPR 321
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
DLKIM + +GR RGFGF+++ ++D+ ++ H +VI +A P+
Sbjct: 187 DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHI--LDGKVIDPKRAIPR 236
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 20/108 (18%)
Query: 6 THNNDLKIMLER-----DSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
T DL+ + R D R + F+ + D R DDA + GR+F I+V ++
Sbjct: 22 TRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR- 80
Query: 61 KMGGEVSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDC 108
G G R P G CF CG GHWARDC
Sbjct: 81 --------------GAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 114
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 111/288 (38%), Gaps = 64/288 (22%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA-QPKM------ 62
++ ++ +R++ + RGF F+T+ DA R+M+G+ + I V +A +P
Sbjct: 36 EVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHG 95
Query: 63 ------------------------------GGEVSDHGYRGGGYSSGGRGSYGADRPGGQ 92
GG + D GY S RG +
Sbjct: 96 PPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPV-----K 150
Query: 93 DDCFKCGRPGHWARDCPSAV----GGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDD 148
R PS + G GG R +GG R + L RD Y+
Sbjct: 151 RGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRR-EPLPSRRDVYLSP 209
Query: 149 RYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKE 205
R DG Y +D Y S+D SRD D PP D D YG S D YP GYG
Sbjct: 210 RDDG--YSTKDSYSSRDYP-SSRD--TRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYGDR 263
Query: 206 RGYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
GY RD R SD + SGG RD Y SR+AP +RG PS+
Sbjct: 264 DGYGRD---RDYSD-HPSGGSYRDSYESYGNSRSAPL---TRGPPPSY 304
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSD 68
+++ ++ +R++ R RGFGFIT+ + D +R M+G R I V+ A S
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGK------SA 86
Query: 69 HGYRGGGYSSGGRG 82
G RGG + + GRG
Sbjct: 87 RGTRGGAFGAHGRG 100
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx
PE=2 SV=1
Length = 379
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
+++ +M +R++ + RGF F+TY + DA REM+G+ + I V +A
Sbjct: 35 SEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREMNGKPLDGKPIKVEQAT 85
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVIS 54
D KI+++R++GR +GF F+T+ D +M AI M+G+E R I+
Sbjct: 36 DSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNIT 80
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 113/287 (39%), Gaps = 62/287 (21%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA-QPKM------ 62
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A +P
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 63 ------------------------------GGEVSDHGYRGGGYSSGGRGSYGADRPGGQ 92
GG + D GY S RG +
Sbjct: 96 LPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFTLSSSRGPLPV-----K 150
Query: 93 DDCFKCGRPGHWARDCPS-AVGGRGGAGG-SFSSRSRFG-GVGVRGDYLGGGRDRYIDDR 149
R PS V G GG + SR R G G R + L RD Y+ R
Sbjct: 151 RGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDGYGGPPRREPLPSRRDVYLSPR 210
Query: 150 YDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKER 206
DG Y +D Y S+D SRD D PP D D YG S D YP GY
Sbjct: 211 DDG--YSTKDSYSSRDYP-SSRD--TRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRD 264
Query: 207 GYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
GY R+ R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 265 GYGRE---RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 113/287 (39%), Gaps = 62/287 (21%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA-QPKM------ 62
++ +M +R++ + RGF F+T+ DA R+M+G+ + I V +A +P
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 63 ------------------------------GGEVSDHGYRGGGYSSGGRGSYGADRPGGQ 92
GG + D GY S RG +
Sbjct: 96 LPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFTMSSSRGPLPV-----K 150
Query: 93 DDCFKCGRPGHWARDCPS-AVGGRGGAGG-SFSSRSRFG-GVGVRGDYLGGGRDRYIDDR 149
R PS V G GG + SR R G G R + L RD Y+ R
Sbjct: 151 RGPPPRSGGPPPKRSAPSGPVRSSSGLGGRAPVSRGRDGYGGPPRREPLPSRRDVYLSPR 210
Query: 150 YDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGS---DRYPVNGYGKER 206
DG Y +D Y S++ SRD D PP D D YG S D YP GY
Sbjct: 211 DDG--YSTKDSYSSREYP-SSRD--TRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRD 264
Query: 207 GYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 252
GY RD R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 265 GYGRD---RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 21/95 (22%)
Query: 23 RGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGGRG 82
R +GF+ + DAI+E++GR V QP + +VS +S R
Sbjct: 119 RNYGFVHLDCVGDVQDAIKELNGR--------VVDGQP-LKVQVS---------TSRVRP 160
Query: 83 SYGADRPGGQDDCFKCGRPGHWARDCPSAVGGRGG 117
G G + C++CGR GHW+++CP G GG
Sbjct: 161 KPGM---GDPEQCYRCGRSGHWSKECPRLYGSAGG 192
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 1 MQQCLT---HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 57
++Q + +++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 58 AQPKMGGEVSDH---GYRGG 74
A G+ SD+ GYRGG
Sbjct: 82 A-----GKSSDNRSRGYRGG 96
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 1 MQQCLT---HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 57
++Q + +++ ++ +R++ R RGFGF+T+ + DA+ M+G+ R I V++
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 58 AQPKMGGEVSDH---GYRGG 74
A G+ SD+ GYRGG
Sbjct: 82 A-----GKSSDNRSRGYRGG 96
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 13 IMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVS 67
+M ++ +GRPRGFGF+ ++D +D ++E H R + V +A + +VS
Sbjct: 37 VMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKH--SIDTREVDVKRAMSREEQQVS 89
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61
D+ IM ++ + RPRGFGF+++ A+D + + + + + V +A PK
Sbjct: 137 TDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTF-HDLSGKQVEVKRALPK 188
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58
+++ ++ +R++ R RGFGFIT+ + DA+R M+G R I V+ A
Sbjct: 33 SEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 10 DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
++ +M +R++ + RGF F+T+ DA RE++G+ + I V +A
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQAT 85
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX
PE=2 SV=1
Length = 396
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
+++ +M +R++ + RGF FIT+ A+R+M+G+ + I V +A
Sbjct: 35 SEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQAT 85
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 12 KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59
+++ +RDSGR +GFGF+T + + + AI ++G + R I V++A+
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60
++++ ++ +GR RGFGF+T + ++ A ++ +G EF R + VN P
Sbjct: 128 VEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.143 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,783,321
Number of Sequences: 539616
Number of extensions: 6876757
Number of successful extensions: 30031
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 692
Number of HSP's that attempted gapping in prelim test: 19036
Number of HSP's gapped (non-prelim): 5828
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)