Query 025249
Match_columns 255
No_of_seqs 361 out of 2210
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.6 3E-16 1E-20 120.0 6.4 60 1-60 39-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.6 7.1E-16 2.4E-20 120.3 7.0 62 1-62 26-87 (110)
3 1h2v_Z 20 kDa nuclear CAP bind 99.6 7.6E-16 2.6E-20 125.9 7.0 65 1-65 59-123 (156)
4 2cq0_A Eukaryotic translation 99.6 3.1E-15 1.1E-19 113.7 9.1 65 1-65 35-99 (103)
5 2dnz_A Probable RNA-binding pr 99.6 2.5E-15 8.4E-20 112.4 8.3 65 1-65 25-89 (95)
6 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.4E-15 1.2E-19 113.2 7.2 66 1-66 32-97 (102)
7 1whw_A Hypothetical protein ri 99.6 4.1E-15 1.4E-19 112.2 7.6 66 1-66 28-93 (99)
8 2dgs_A DAZ-associated protein 99.6 6E-15 2E-19 111.4 8.2 65 1-66 30-94 (99)
9 3ns6_A Eukaryotic translation 99.6 9E-16 3.1E-20 117.0 3.6 62 1-62 32-94 (100)
10 1x5t_A Splicing factor 3B subu 99.6 3.4E-15 1.2E-19 111.8 6.7 65 1-65 25-90 (96)
11 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.1E-15 1.1E-19 109.9 6.2 62 1-62 26-87 (87)
12 3md1_A Nuclear and cytoplasmic 99.6 6.3E-15 2.1E-19 107.3 7.4 62 1-62 21-82 (83)
13 2cpz_A CUG triplet repeat RNA- 99.6 5.3E-15 1.8E-19 114.7 7.4 66 1-66 45-110 (115)
14 2lxi_A RNA-binding protein 10; 99.6 9.7E-16 3.3E-20 115.2 2.8 64 1-64 21-86 (91)
15 1x5s_A Cold-inducible RNA-bind 99.6 3.9E-15 1.3E-19 112.9 5.9 65 1-65 32-96 (102)
16 2dnm_A SRP46 splicing factor; 99.6 4E-15 1.4E-19 113.2 5.9 65 1-65 33-97 (103)
17 1x5u_A Splicing factor 3B subu 99.5 5E-15 1.7E-19 112.8 6.4 65 1-65 35-99 (105)
18 3p5t_L Cleavage and polyadenyl 99.5 1.4E-15 4.8E-20 113.4 3.0 64 1-64 21-86 (90)
19 1u6f_A Tcubp1, RNA-binding pro 99.5 5.6E-15 1.9E-19 118.2 6.6 65 1-65 62-126 (139)
20 3ex7_B RNA-binding protein 8A; 99.5 3.8E-15 1.3E-19 117.2 5.4 65 1-65 42-106 (126)
21 2cpi_A CCR4-NOT transcription 99.5 2.4E-14 8.2E-19 110.9 9.8 63 1-63 38-103 (111)
22 1p27_B RNA-binding protein 8A; 99.5 5.8E-15 2E-19 112.6 5.9 63 1-63 43-105 (106)
23 2dgo_A Cytotoxic granule-assoc 99.5 9.6E-15 3.3E-19 113.1 7.2 65 1-65 35-99 (115)
24 2do4_A Squamous cell carcinoma 99.5 1.1E-14 3.8E-19 110.1 7.3 63 1-64 37-99 (100)
25 2lkz_A RNA-binding protein 5; 99.5 6E-15 2E-19 112.5 5.6 60 1-60 29-94 (95)
26 2d9p_A Polyadenylate-binding p 99.5 2.4E-14 8.1E-19 108.8 8.7 64 1-66 35-98 (103)
27 2e5h_A Zinc finger CCHC-type a 99.5 1.4E-14 4.7E-19 108.1 7.2 59 1-59 36-94 (94)
28 2cpe_A RNA-binding protein EWS 99.5 1.4E-14 4.7E-19 111.9 7.4 65 1-65 35-107 (113)
29 2cph_A RNA binding motif prote 99.5 1.3E-14 4.6E-19 110.6 7.2 66 1-66 35-102 (107)
30 1x4h_A RNA-binding protein 28; 99.5 1.6E-14 5.4E-19 110.9 7.4 66 1-66 35-106 (111)
31 2x1f_A MRNA 3'-END-processing 99.5 1.2E-14 4E-19 109.3 6.5 63 1-63 22-84 (96)
32 1wi8_A EIF-4B, eukaryotic tran 99.5 2E-14 6.8E-19 109.6 7.8 64 1-66 35-99 (104)
33 3pgw_S U1-70K; protein-RNA com 99.5 2.2E-14 7.6E-19 136.5 9.8 66 1-66 122-187 (437)
34 2cqd_A RNA-binding region cont 99.5 2.5E-14 8.5E-19 111.1 8.3 64 1-65 37-100 (116)
35 2dgp_A Bruno-like 4, RNA bindi 99.5 1E-14 3.5E-19 111.3 5.9 65 1-65 33-100 (106)
36 2cqc_A Arginine/serine-rich sp 99.5 1.3E-14 4.4E-19 108.3 6.2 60 1-60 35-94 (95)
37 1oo0_B CG8781-PA, drosophila Y 99.5 1.3E-14 4.5E-19 111.5 6.3 63 1-63 46-108 (110)
38 2cpf_A RNA binding motif prote 99.5 1.3E-14 4.4E-19 109.2 5.9 65 1-65 25-92 (98)
39 2kxn_B Transformer-2 protein h 99.5 1.3E-14 4.3E-19 116.1 6.1 63 1-63 66-128 (129)
40 2dnh_A Bruno-like 5, RNA bindi 99.5 2.3E-14 7.8E-19 109.1 7.1 64 1-65 35-101 (105)
41 2dng_A Eukaryotic translation 99.5 3.4E-14 1.2E-18 108.1 8.0 63 1-65 35-97 (103)
42 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.3E-14 4.5E-19 106.1 5.4 59 1-59 27-85 (85)
43 1x4b_A Heterogeneous nuclear r 99.5 3E-14 1E-18 110.7 7.5 65 1-66 47-111 (116)
44 2fy1_A RNA-binding motif prote 99.5 4.1E-14 1.4E-18 110.8 7.9 63 1-64 27-89 (116)
45 2cq3_A RNA-binding protein 9; 99.5 7.6E-14 2.6E-18 106.0 8.9 64 1-66 35-98 (103)
46 2dgx_A KIAA0430 protein; RRM d 99.5 2.1E-14 7.2E-19 108.3 5.7 61 1-64 33-93 (96)
47 2jrs_A RNA-binding protein 39; 99.5 2E-14 6.9E-19 111.2 5.7 62 1-62 46-107 (108)
48 3ucg_A Polyadenylate-binding p 99.5 3.1E-14 1.1E-18 104.9 6.5 61 1-62 26-86 (89)
49 2cqp_A RNA-binding protein 12; 99.5 1.9E-14 6.6E-19 108.2 5.2 62 1-62 35-96 (98)
50 4f25_A Polyadenylate-binding p 99.5 2.8E-14 9.4E-19 111.4 6.2 62 1-64 25-86 (115)
51 4a8x_A RNA-binding protein wit 99.5 1.9E-14 6.5E-19 105.7 4.9 63 1-63 24-87 (88)
52 2dh8_A DAZ-associated protein 99.5 2.1E-14 7.3E-19 109.4 5.1 65 1-66 36-100 (105)
53 2la6_A RNA-binding protein FUS 99.5 3.3E-14 1.1E-18 107.4 6.1 59 1-59 33-99 (99)
54 2div_A TRNA selenocysteine ass 99.5 2.1E-14 7.1E-19 108.3 4.8 63 1-63 29-96 (99)
55 3ulh_A THO complex subunit 4; 99.5 3.7E-14 1.3E-18 108.3 6.1 58 1-59 49-106 (107)
56 1p1t_A Cleavage stimulation fa 99.5 2.2E-14 7.5E-19 108.9 4.8 64 1-64 28-91 (104)
57 2ek1_A RNA-binding protein 12; 99.5 2.3E-14 8E-19 107.0 4.9 60 1-60 35-94 (95)
58 2pe8_A Splicing factor 45; RRM 99.5 6.2E-14 2.1E-18 108.7 7.1 60 1-60 33-93 (105)
59 2do0_A HnRNP M, heterogeneous 99.5 7.5E-14 2.6E-18 107.7 7.6 63 1-64 35-97 (114)
60 2khc_A Testis-specific RNP-typ 99.5 3.4E-14 1.2E-18 110.5 5.5 59 1-59 60-118 (118)
61 2cqi_A Nucleolysin TIAR; RNA r 99.5 8.8E-14 3E-18 105.6 7.5 63 1-65 35-97 (103)
62 2cq4_A RNA binding motif prote 99.5 2.6E-14 8.8E-19 110.7 4.2 62 1-63 45-106 (114)
63 2rs2_A Musashi-1, RNA-binding 99.5 8.6E-14 3E-18 107.7 7.0 63 1-64 45-107 (109)
64 2ki2_A SS-DNA binding protein 99.5 2E-14 7E-19 106.5 3.3 63 1-64 21-83 (90)
65 2dhg_A TRNA selenocysteine ass 99.5 4.6E-14 1.6E-18 107.2 5.2 64 1-65 29-94 (104)
66 3n9u_C Cleavage and polyadenyl 99.5 3.4E-14 1.2E-18 117.4 4.8 61 1-61 75-137 (156)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.5 6.1E-14 2.1E-18 115.9 6.3 65 1-65 92-156 (165)
68 2fc8_A NCL protein; structure 99.5 1.2E-13 4.3E-18 104.5 7.5 60 5-64 36-95 (102)
69 2ywk_A Putative RNA-binding pr 99.5 6.8E-14 2.3E-18 104.5 5.8 59 1-60 36-94 (95)
70 2jwn_A Embryonic polyadenylate 99.5 1.2E-13 4E-18 108.3 7.3 63 1-64 56-118 (124)
71 1x4a_A Splicing factor, argini 99.5 1.3E-13 4.4E-18 105.9 7.4 62 1-65 42-103 (109)
72 2lcw_A RNA-binding protein FUS 99.2 7.1E-15 2.4E-19 114.4 0.0 65 1-65 27-99 (116)
73 1x4e_A RNA binding motif, sing 99.4 3.3E-14 1.1E-18 104.2 3.4 59 1-59 25-83 (85)
74 3q2s_C Cleavage and polyadenyl 99.4 3E-14 1E-18 124.5 3.6 61 1-61 88-150 (229)
75 2dgw_A Probable RNA-binding pr 99.4 1.5E-13 5.1E-18 102.1 6.6 60 1-63 30-89 (91)
76 2kn4_A Immunoglobulin G-bindin 99.4 7.5E-14 2.6E-18 113.7 5.5 65 1-65 90-154 (158)
77 2kt5_A RNA and export factor-b 99.4 1.6E-13 5.6E-18 107.8 7.2 63 1-64 55-117 (124)
78 1x5o_A RNA binding motif, sing 99.4 2E-13 6.7E-18 105.5 7.5 61 1-62 45-113 (114)
79 2j76_E EIF-4B, EIF4B, eukaryot 99.4 7.6E-14 2.6E-18 106.0 5.0 60 1-62 39-99 (100)
80 1wez_A HnRNP H', FTP-3, hetero 99.4 1.7E-13 5.9E-18 105.1 6.9 59 1-62 35-93 (102)
81 2mss_A Protein (musashi1); RNA 99.4 4.1E-14 1.4E-18 101.4 3.2 57 1-58 19-75 (75)
82 2cqg_A TDP-43, TAR DNA-binding 99.4 2.3E-13 7.8E-18 103.3 7.5 64 1-66 35-98 (103)
83 2lea_A Serine/arginine-rich sp 99.4 5.6E-14 1.9E-18 113.1 4.0 65 1-65 67-131 (135)
84 3s7r_A Heterogeneous nuclear r 99.4 1.6E-13 5.6E-18 100.9 6.1 57 1-58 31-87 (87)
85 2dgv_A HnRNP M, heterogeneous 99.4 1.3E-13 4.5E-18 102.3 5.4 62 1-64 28-89 (92)
86 1uaw_A Mouse-musashi-1; RNP-ty 99.4 7.8E-14 2.7E-18 100.1 4.0 58 1-59 20-77 (77)
87 2m2b_A RNA-binding protein 10; 99.4 3.2E-14 1.1E-18 113.3 2.0 63 1-64 43-111 (131)
88 2dis_A Unnamed protein product 99.4 9.2E-14 3.2E-18 106.4 4.4 65 1-65 28-96 (109)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.3E-13 4.6E-18 109.5 5.2 58 1-58 83-140 (140)
90 3v4m_A Splicing factor U2AF 65 99.4 1.8E-13 6.2E-18 105.9 5.4 60 1-60 35-96 (105)
91 2err_A Ataxin-2-binding protei 99.4 2.6E-13 9E-18 104.8 6.0 60 1-62 49-108 (109)
92 2nlw_A Eukaryotic translation 99.4 1.4E-13 4.8E-18 105.5 4.2 60 1-62 41-101 (105)
93 1x5p_A Negative elongation fac 99.4 1.1E-12 3.7E-17 98.8 8.2 59 1-65 33-91 (97)
94 1x4c_A Splicing factor, argini 99.4 5.9E-13 2E-17 102.4 6.8 58 1-65 35-97 (108)
95 2fc9_A NCL protein; structure 99.4 8.2E-13 2.8E-17 99.9 7.5 61 1-65 35-95 (101)
96 2wbr_A GW182, gawky, LD47780P; 99.4 3E-13 1E-17 102.4 4.9 53 1-59 27-79 (89)
97 1jmt_A Splicing factor U2AF 35 99.4 3.1E-13 1.1E-17 104.4 5.0 55 3-58 49-103 (104)
98 2cpy_A RNA-binding protein 12; 99.4 2.1E-13 7E-18 106.1 3.9 60 1-62 35-95 (114)
99 1s79_A Lupus LA protein; RRM, 99.4 2.5E-13 8.5E-18 104.7 4.0 58 1-60 31-88 (103)
100 2a3j_A U1 small nuclear ribonu 99.4 2.6E-13 9E-18 108.7 4.3 60 1-63 53-112 (127)
101 1wel_A RNA-binding protein 12; 99.4 8.8E-14 3E-18 109.6 1.4 61 1-62 45-105 (124)
102 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.6E-17 101.2 8.2 61 1-65 46-106 (112)
103 2cpx_A Hypothetical protein FL 99.4 1.7E-13 5.8E-18 105.9 2.7 66 1-66 45-110 (115)
104 2dnq_A RNA-binding protein 4B; 99.4 1.2E-12 4.1E-17 97.1 7.0 57 1-65 28-84 (90)
105 3md3_A Nuclear and cytoplasmic 99.4 1.1E-12 3.6E-17 105.5 7.0 60 1-60 107-166 (166)
106 2qfj_A FBP-interacting repress 99.3 9.5E-13 3.2E-17 110.8 6.8 64 1-64 145-208 (216)
107 2dnn_A RNA-binding protein 12; 99.3 9.8E-13 3.4E-17 102.6 6.2 58 1-61 36-93 (109)
108 1why_A Hypothetical protein ri 99.3 9.1E-13 3.1E-17 99.1 5.8 57 1-63 37-95 (97)
109 2db1_A Heterogeneous nuclear r 99.3 4.6E-13 1.6E-17 105.0 4.3 60 1-62 37-99 (118)
110 2krb_A Eukaryotic translation 99.3 1.6E-13 5.6E-18 100.0 1.6 54 1-56 27-81 (81)
111 1wg5_A Heterogeneous nuclear r 99.3 6.6E-13 2.3E-17 101.6 5.0 61 1-63 35-96 (104)
112 1fj7_A Nucleolin RBD1, protein 99.3 7.8E-14 2.7E-18 105.6 -0.3 62 1-64 37-98 (101)
113 2hgn_A Heterogeneous nuclear r 99.3 1.8E-13 6E-18 111.4 1.6 61 1-64 66-126 (139)
114 2dgt_A RNA-binding protein 30; 99.3 2.5E-12 8.5E-17 95.7 7.6 57 1-65 30-86 (92)
115 2f3j_A RNA and export factor b 99.3 5.6E-13 1.9E-17 112.1 4.5 61 1-62 108-168 (177)
116 3ue2_A Poly(U)-binding-splicin 99.3 7.7E-13 2.6E-17 104.8 5.1 60 1-60 45-108 (118)
117 1x4d_A Matrin 3; structural ge 99.3 1.8E-12 6.1E-17 100.2 6.9 58 1-64 36-95 (102)
118 2dgu_A Heterogeneous nuclear r 99.3 2.6E-12 8.9E-17 97.7 7.6 58 1-66 31-88 (103)
119 2hvz_A Splicing factor, argini 99.3 6.2E-13 2.1E-17 100.5 4.1 59 1-64 20-78 (101)
120 2cjk_A Nuclear polyadenylated 99.3 7E-13 2.4E-17 107.3 4.7 61 1-62 107-167 (167)
121 2cpj_A Non-POU domain-containi 99.3 2.5E-12 8.5E-17 97.0 7.3 59 1-65 35-93 (99)
122 1x4g_A Nucleolysin TIAR; struc 99.3 1.6E-12 5.6E-17 99.8 6.3 59 1-65 45-103 (109)
123 2cq1_A PTB-like protein L; RRM 99.3 4.1E-12 1.4E-16 97.8 8.2 59 1-65 35-95 (101)
124 1iqt_A AUF1, heterogeneous nuc 99.3 2.4E-13 8.3E-18 97.1 1.2 57 1-58 19-75 (75)
125 2hgl_A HNRPF protein, heteroge 99.3 6.6E-13 2.2E-17 107.6 3.6 59 1-61 64-125 (136)
126 1l3k_A Heterogeneous nuclear r 99.3 1.8E-12 6.3E-17 107.4 6.2 65 1-66 124-188 (196)
127 2yh0_A Splicing factor U2AF 65 99.3 1.7E-12 5.8E-17 107.8 5.9 63 1-63 134-196 (198)
128 1sjq_A Polypyrimidine tract-bi 99.3 9.8E-13 3.4E-17 102.4 3.9 59 1-65 36-96 (105)
129 2e5j_A Methenyltetrahydrofolat 99.3 1.4E-12 4.8E-17 98.2 4.6 58 1-63 39-96 (97)
130 3beg_B Splicing factor, argini 99.3 2.4E-12 8.3E-17 100.4 6.0 57 1-64 36-97 (115)
131 1nu4_A U1A RNA binding domain; 99.3 7.1E-13 2.4E-17 99.2 2.7 60 1-63 32-91 (97)
132 2dnp_A RNA-binding protein 14; 99.3 3.1E-12 1.1E-16 94.8 5.9 56 1-64 29-84 (90)
133 1fxl_A Paraneoplastic encephal 99.3 3.8E-12 1.3E-16 102.4 6.8 63 1-63 22-84 (167)
134 2bz2_A Negative elongation fac 99.3 3.1E-12 1.1E-16 101.1 6.1 59 1-65 57-115 (121)
135 2g4b_A Splicing factor U2AF 65 99.3 2.3E-12 7.9E-17 104.7 5.5 59 1-59 114-172 (172)
136 2la4_A Nuclear and cytoplasmic 99.3 1.8E-12 6.1E-17 98.0 4.4 55 1-61 47-101 (101)
137 2ad9_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 101.4 6.3 59 1-65 51-111 (119)
138 3r27_A HnRNP L, heterogeneous 99.3 3E-12 1E-16 98.8 5.8 56 1-62 41-98 (100)
139 1b7f_A Protein (SXL-lethal pro 99.3 2.9E-12 9.8E-17 103.6 5.8 63 1-63 23-85 (168)
140 2lmi_A GRSF-1, G-rich sequence 99.3 7.9E-13 2.7E-17 101.7 2.3 60 1-62 31-93 (107)
141 1wf1_A RNA-binding protein RAL 99.3 3.8E-12 1.3E-16 97.9 6.1 56 1-64 48-103 (110)
142 1x4f_A Matrin 3; structural ge 99.3 4.1E-12 1.4E-16 99.9 6.1 59 1-65 46-106 (112)
143 2jvo_A Nucleolar protein 3; nu 99.3 4.7E-12 1.6E-16 97.8 6.4 56 1-64 51-106 (108)
144 2jvr_A Nucleolar protein 3; RN 99.3 1.9E-12 6.5E-17 101.4 4.1 58 1-62 48-106 (111)
145 4f02_A Polyadenylate-binding p 99.3 2.5E-12 8.5E-17 109.8 5.1 61 1-63 123-183 (213)
146 4f02_A Polyadenylate-binding p 99.3 4.8E-12 1.6E-16 108.0 6.8 62 1-62 35-96 (213)
147 2xs2_A Deleted in azoospermia- 99.3 1.4E-12 4.7E-17 98.8 2.7 61 1-64 29-89 (102)
148 1wex_A Hypothetical protein (r 99.3 4E-12 1.4E-16 98.2 5.3 58 1-64 35-94 (104)
149 2j8a_A Histone-lysine N-methyl 99.3 2.3E-12 8E-17 104.1 4.0 59 1-59 26-94 (136)
150 2kvi_A Nuclear polyadenylated 99.3 4.2E-12 1.4E-16 95.5 5.0 57 1-65 31-87 (96)
151 3zzy_A Polypyrimidine tract-bi 99.3 9.3E-12 3.2E-16 100.4 7.1 59 1-64 48-109 (130)
152 3lqv_A PRE-mRNA branch site pr 99.2 4.8E-12 1.6E-16 97.8 5.2 59 1-62 28-86 (115)
153 2e44_A Insulin-like growth fac 99.2 4E-12 1.4E-16 95.1 4.3 58 1-62 35-93 (96)
154 2e5g_A U6 snRNA-specific termi 99.2 8.7E-12 3E-16 93.2 6.0 59 1-65 28-86 (94)
155 2i2y_A Fusion protein consists 99.2 5E-12 1.7E-16 102.4 4.8 57 1-62 93-149 (150)
156 1b7f_A Protein (SXL-lethal pro 99.2 8.3E-12 2.8E-16 100.8 6.0 58 1-58 109-168 (168)
157 1fjc_A Nucleolin RBD2, protein 99.2 3.8E-12 1.3E-16 95.2 3.5 59 1-64 36-94 (96)
158 3egn_A RNA-binding protein 40; 99.2 1.9E-12 6.3E-17 104.1 1.9 64 1-64 65-133 (143)
159 2xnq_A Nuclear polyadenylated 99.2 1.3E-11 4.5E-16 93.4 6.5 54 1-62 43-96 (97)
160 3s6e_A RNA-binding protein 39; 99.2 8.6E-12 2.9E-16 98.2 5.6 56 1-60 37-92 (114)
161 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.3E-11 4.5E-16 95.0 6.5 58 1-65 37-94 (100)
162 2cqh_A IGF-II mRNA-binding pro 99.2 6.5E-12 2.2E-16 93.5 4.5 58 1-65 28-87 (93)
163 2ytc_A PRE-mRNA-splicing facto 99.2 8.2E-12 2.8E-16 91.1 4.9 53 1-59 32-85 (85)
164 2cpd_A Apobec-1 stimulating pr 99.2 2.1E-11 7.2E-16 91.8 7.3 56 1-64 35-92 (99)
165 2qfj_A FBP-interacting repress 99.2 9.7E-12 3.3E-16 104.6 5.7 62 1-62 48-109 (216)
166 1whx_A Hypothetical protein ri 99.2 6.6E-12 2.2E-16 97.4 4.3 56 1-62 30-85 (111)
167 1sjr_A Polypyrimidine tract-bi 99.2 8.1E-12 2.8E-16 104.5 5.1 59 1-63 66-126 (164)
168 2e5i_A Heterogeneous nuclear r 99.2 1.8E-11 6.2E-16 97.8 6.8 57 1-63 45-104 (124)
169 1wg1_A KIAA1579 protein, homol 99.2 1.6E-11 5.4E-16 90.8 6.0 55 1-62 25-79 (88)
170 1fxl_A Paraneoplastic encephal 99.2 1.2E-11 4E-16 99.4 5.5 58 1-58 108-167 (167)
171 1l3k_A Heterogeneous nuclear r 99.2 2E-11 7E-16 101.1 6.1 62 1-63 33-94 (196)
172 2dha_A FLJ20171 protein; RRM d 99.2 3.8E-12 1.3E-16 101.4 1.4 59 1-61 43-105 (123)
173 2cq2_A Hypothetical protein LO 99.2 1.3E-11 4.3E-16 97.5 4.2 57 1-63 47-108 (114)
174 2ghp_A U4/U6 snRNA-associated 99.2 1.8E-11 6.1E-16 108.4 5.6 61 1-62 231-292 (292)
175 3tyt_A Heterogeneous nuclear r 99.2 2.4E-11 8.2E-16 104.1 6.3 57 1-62 25-81 (205)
176 2dnl_A Cytoplasmic polyadenyla 99.2 1.9E-11 6.6E-16 94.8 5.1 57 1-60 28-87 (114)
177 3md3_A Nuclear and cytoplasmic 99.2 3.9E-11 1.3E-15 96.3 7.0 62 1-63 20-81 (166)
178 2hgm_A HNRPF protein, heteroge 99.2 7E-12 2.4E-16 100.4 2.3 58 1-61 62-121 (126)
179 3smz_A Protein raver-1, ribonu 99.1 5.2E-11 1.8E-15 105.0 7.4 62 1-63 205-266 (284)
180 3nmr_A Cugbp ELAV-like family 99.1 3.3E-11 1.1E-15 97.7 5.5 58 1-59 115-175 (175)
181 2diu_A KIAA0430 protein; struc 99.1 2.7E-11 9.3E-16 92.7 4.0 55 1-65 33-88 (96)
182 3pgw_A U1-A; protein-RNA compl 99.1 6.5E-11 2.2E-15 104.2 6.9 60 1-63 33-92 (282)
183 3u1l_A PRE-mRNA-splicing facto 99.1 6.5E-11 2.2E-15 104.6 4.9 58 1-64 163-232 (240)
184 3nmr_A Cugbp ELAV-like family 99.1 9.1E-11 3.1E-15 95.1 5.0 63 1-63 23-90 (175)
185 1wf0_A TDP-43, TAR DNA-binding 99.1 7.7E-11 2.6E-15 86.8 4.0 58 1-65 25-82 (88)
186 3smz_A Protein raver-1, ribonu 99.1 1.7E-10 5.7E-15 101.7 6.6 64 1-64 115-178 (284)
187 3d2w_A TAR DNA-binding protein 99.1 1.5E-10 5.2E-15 86.3 5.3 54 1-63 31-86 (89)
188 2cjk_A Nuclear polyadenylated 99.0 1.2E-10 4.3E-15 93.9 4.5 60 1-62 23-82 (167)
189 2dnr_A Synaptojanin-1; RRM dom 99.0 1.9E-10 6.6E-15 87.2 4.9 52 1-61 35-86 (91)
190 2voo_A Lupus LA protein; RNA-b 99.0 2.7E-10 9.3E-15 96.8 6.0 58 1-60 129-186 (193)
191 1fje_B Nucleolin RBD12, protei 99.0 3.8E-10 1.3E-14 92.0 6.1 46 17-62 130-175 (175)
192 2adc_A Polypyrimidine tract-bi 99.0 2.7E-10 9.1E-15 98.2 4.1 57 1-62 55-111 (229)
193 2hzc_A Splicing factor U2AF 65 99.0 3E-10 1E-14 82.9 3.7 44 7-57 43-86 (87)
194 1qm9_A Polypyrimidine tract-bi 98.9 3.1E-10 1.1E-14 94.6 3.3 57 1-62 24-80 (198)
195 2ghp_A U4/U6 snRNA-associated 98.9 6.7E-10 2.3E-14 98.2 4.9 63 1-64 137-200 (292)
196 3dxb_A Thioredoxin N-terminall 98.9 1.2E-09 4E-14 93.7 6.2 58 2-59 150-211 (222)
197 3sde_A Paraspeckle component 1 98.9 1.1E-09 3.9E-14 96.1 5.2 62 1-63 116-181 (261)
198 1fje_B Nucleolin RBD12, protei 98.8 2.9E-10 1E-14 92.7 0.0 61 1-63 33-93 (175)
199 1ufw_A Synaptojanin 2; RNP dom 98.8 2E-09 6.7E-14 82.2 3.9 50 2-60 45-94 (95)
200 3sde_A Paraspeckle component 1 98.8 7.3E-09 2.5E-13 90.9 6.3 54 1-60 42-95 (261)
201 2yh0_A Splicing factor U2AF 65 98.7 9.4E-10 3.2E-14 91.1 -0.3 43 20-63 48-90 (198)
202 3tht_A Alkylated DNA repair pr 98.7 7.5E-09 2.6E-13 95.8 4.7 53 1-59 40-97 (345)
203 2g4b_A Splicing factor U2AF 65 98.6 3.3E-08 1.1E-12 79.8 4.9 50 7-63 41-90 (172)
204 3tyt_A Heterogeneous nuclear r 98.6 2E-08 6.8E-13 85.8 3.7 52 1-54 143-196 (205)
205 1owx_A Lupus LA protein, SS-B, 98.2 1.1E-06 3.8E-11 69.8 4.8 53 1-59 39-94 (121)
206 2adc_A Polypyrimidine tract-bi 98.1 3.4E-06 1.2E-10 72.2 5.2 40 22-61 188-228 (229)
207 1qm9_A Polypyrimidine tract-bi 98.0 2.7E-06 9.3E-11 70.5 4.0 40 22-61 157-197 (198)
208 3pgw_A U1-A; protein-RNA compl 97.9 7.9E-06 2.7E-10 71.5 5.4 38 22-59 243-281 (282)
209 2kn4_A Immunoglobulin G-bindin 97.4 0.00014 4.9E-09 58.3 4.7 38 9-48 1-38 (158)
210 2l9w_A U4/U6 snRNA-associated- 97.2 0.0003 1E-08 54.9 4.3 46 6-57 51-96 (117)
211 2i2y_A Fusion protein consists 96.9 0.00058 2E-08 54.4 3.8 48 11-61 3-51 (150)
212 1dsq_A Nucleic acid binding pr 96.0 0.0035 1.2E-07 36.2 2.2 20 93-112 3-22 (26)
213 1a6b_B Momulv, zinc finger pro 96.0 0.0056 1.9E-07 39.1 3.3 23 90-112 8-30 (40)
214 1wwh_A Nucleoporin 35, nucleop 95.9 0.013 4.4E-07 46.2 5.7 50 2-58 44-94 (119)
215 1wey_A Calcipressin 1; structu 95.6 0.011 3.8E-07 45.5 4.2 55 1-61 30-84 (104)
216 1u6p_A GAG polyprotein; MLV, A 95.2 0.0068 2.3E-07 41.6 1.6 24 89-112 20-43 (56)
217 3p3d_A Nucleoporin 53; structu 94.5 0.018 6E-07 46.1 2.6 57 2-59 27-97 (132)
218 3ts2_A Protein LIN-28 homolog 94.5 0.0017 5.9E-08 52.9 -3.4 18 93-110 98-115 (148)
219 2ysa_A Retinoblastoma-binding 94.2 0.025 8.6E-07 38.5 2.4 20 92-111 7-26 (55)
220 1nc8_A Nucleocapsid protein; H 93.1 0.032 1.1E-06 32.8 1.2 19 93-111 7-25 (29)
221 2dhx_A Poly (ADP-ribose) polym 92.0 0.33 1.1E-05 37.2 6.0 48 6-62 38-85 (104)
222 1whv_A Poly(A)-specific ribonu 89.0 0.3 1E-05 37.1 3.3 36 1-44 35-70 (100)
223 1cl4_A Protein (GAG polyprotei 87.9 0.34 1.2E-05 32.8 2.8 21 92-112 30-50 (60)
224 3ctr_A Poly(A)-specific ribonu 87.4 0.32 1.1E-05 37.1 2.6 36 1-44 25-60 (101)
225 2g0c_A ATP-dependent RNA helic 87.0 0.48 1.6E-05 33.2 3.2 44 7-59 32-75 (76)
226 2a51_A Nucleocapsid protein; s 86.5 0.36 1.2E-05 29.9 2.1 18 93-110 22-39 (39)
227 3nyb_B Protein AIR2; polya RNA 85.6 0.33 1.1E-05 35.6 1.7 21 93-113 47-67 (83)
228 2ihx_A Nucleocapsid (NC) prote 85.4 0.32 1.1E-05 33.2 1.5 21 93-113 31-51 (61)
229 2a51_A Nucleocapsid protein; s 85.3 0.44 1.5E-05 29.5 2.0 18 94-111 2-19 (39)
230 2bl6_A Nucleocapsid protein P1 84.9 0.34 1.2E-05 29.7 1.3 18 93-110 20-37 (37)
231 2bl6_A Nucleocapsid protein P1 83.7 0.5 1.7E-05 28.9 1.7 18 94-111 2-19 (37)
232 1cl4_A Protein (GAG polyprotei 82.9 0.24 8.3E-06 33.6 0.0 19 94-112 3-21 (60)
233 2ihx_A Nucleocapsid (NC) prote 82.7 0.58 2E-05 31.9 1.9 21 92-112 4-24 (61)
234 2ec7_A GAG polyprotein (PR55GA 82.6 0.61 2.1E-05 30.4 1.9 19 93-111 7-25 (49)
235 2cqf_A RNA-binding protein LIN 80.8 1.4 4.7E-05 30.3 3.3 18 93-110 8-25 (63)
236 2cqf_A RNA-binding protein LIN 80.7 0.82 2.8E-05 31.4 2.1 20 92-111 29-48 (63)
237 2ec7_A GAG polyprotein (PR55GA 80.4 0.67 2.3E-05 30.2 1.5 19 93-111 28-46 (49)
238 1a1t_A Nucleocapsid protein; s 79.3 0.66 2.3E-05 30.8 1.2 19 93-111 34-52 (55)
239 1a1t_A Nucleocapsid protein; s 78.9 0.71 2.4E-05 30.6 1.3 19 93-111 13-31 (55)
240 2li8_A Protein LIN-28 homolog 77.1 1.4 4.9E-05 31.3 2.5 20 92-111 24-43 (74)
241 2li8_A Protein LIN-28 homolog 75.2 1.2 4E-05 31.8 1.6 20 92-111 46-65 (74)
242 3pq1_A Poly(A) RNA polymerase; 74.5 1.1 3.7E-05 42.7 1.7 35 2-41 73-107 (464)
243 3ts2_A Protein LIN-28 homolog 73.8 1.3 4.3E-05 35.7 1.6 21 92-112 119-139 (148)
244 2lli_A Protein AIR2; RNA surve 71.5 2.5 8.5E-05 32.5 2.8 20 91-110 104-123 (124)
245 2i9x_A Putative septation prot 61.5 6.3 0.00021 29.0 3.1 26 7-32 5-30 (87)
246 1uw4_A UPF3X; nonsense mediate 55.6 15 0.00052 27.0 4.4 36 24-59 46-86 (91)
247 3nyb_B Protein AIR2; polya RNA 55.4 3.7 0.00013 29.8 1.0 19 93-111 6-24 (83)
248 2ia9_A Putative septation prot 53.4 11 0.00037 28.5 3.3 26 7-32 5-30 (100)
249 2i9z_A Putative septation prot 52.4 12 0.00039 28.5 3.3 26 7-32 5-30 (105)
250 2lli_A Protein AIR2; RNA surve 51.9 6.6 0.00023 30.0 2.0 19 93-111 5-23 (124)
251 3pgw_S U1-70K; protein-RNA com 49.1 1.2 3.9E-05 41.9 -3.4 34 1-34 12-52 (437)
252 2l08_A Regulator of nonsense t 48.3 21 0.00072 26.6 4.2 36 24-59 54-94 (97)
253 2cu1_A Mitogen-activated prote 42.5 9.7 0.00033 28.8 1.5 50 3-61 39-88 (103)
254 3lpe_A Putative transcription 39.8 27 0.00094 25.3 3.6 33 8-45 40-72 (92)
255 3h7h_B Transcription elongatio 36.7 31 0.0011 25.9 3.6 34 8-46 41-74 (106)
256 2e5p_A Protein PHF1, PHD finge 33.7 14 0.00049 25.8 1.1 11 23-33 37-47 (68)
257 2e7g_A Putative ribosome-bindi 31.2 45 0.0015 25.7 3.8 36 5-44 43-79 (129)
258 2m0o_A PHD finger protein 1; t 27.7 21 0.00071 25.7 1.1 11 23-33 54-64 (79)
259 2lea_A Serine/arginine-rich sp 26.4 14 0.00048 28.3 0.0 27 25-51 6-32 (135)
260 2e5q_A PHD finger protein 19; 24.3 13 0.00045 25.6 -0.4 12 22-33 34-45 (63)
261 2jrh_A Mitogen-activated prote 23.6 75 0.0026 23.4 3.5 49 4-61 36-84 (94)
262 2exu_A Transcription initiatio 23.5 54 0.0018 27.5 3.1 25 22-46 148-172 (200)
263 4bby_A Alkyldihydroxyacetoneph 22.9 75 0.0026 31.0 4.5 40 4-44 370-409 (658)
264 2kzf_A RBFA, ribosome-binding 22.4 74 0.0025 23.6 3.4 36 5-44 35-71 (106)
265 1q1o_A Cell division control p 22.1 82 0.0028 23.4 3.6 28 26-55 68-95 (98)
266 2kkc_A Sequestosome-1; P62, PB 21.7 1.2E+02 0.0043 22.5 4.5 18 27-44 74-91 (102)
267 3p8b_B Transcription antitermi 21.2 82 0.0028 24.5 3.7 33 8-45 33-65 (152)
268 2npt_B Mitogen-activated prote 21.1 1.4E+02 0.0047 22.3 4.5 33 4-44 52-84 (100)
269 2c60_A Human mitogen-activated 20.2 1E+02 0.0035 23.3 3.7 45 4-57 63-107 (111)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=120.01 Aligned_cols=60 Identities=22% Similarity=0.521 Sum_probs=58.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
||++||+|++|+|++|+.|++++|||||+|.++++|++||++||+++|.+++|.|++|+|
T Consensus 39 ~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 39 LFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 589999999999999999999999999999999999999999999999999999999987
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=7.1e-16 Score=120.29 Aligned_cols=62 Identities=11% Similarity=0.244 Sum_probs=59.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|++|+.|++++|||||+|++.++|++||++||+++|.+++|.|++|..+.
T Consensus 26 ~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 26 MCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred HHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 58999999999999999999999999999999999999999999999999999999997543
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=7.6e-16 Score=125.86 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=61.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++++.|+++++||||+|+++++|++||++||+++|++++|+|++|+++....
T Consensus 59 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 123 (156)
T 1h2v_Z 59 LFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGR 123 (156)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTTC
T ss_pred HHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCcC
Confidence 58999999999999999999999999999999999999999999999999999999999866543
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=113.74 Aligned_cols=65 Identities=18% Similarity=0.417 Sum_probs=61.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||++||+++|.+++|+|++|+++....
T Consensus 35 ~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 35 LFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNSG 99 (103)
T ss_dssp TSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCSC
T ss_pred HHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999876553
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=112.39 Aligned_cols=65 Identities=25% Similarity=0.587 Sum_probs=61.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||++||+++|++++|.|++|+++....
T Consensus 25 ~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 89 (95)
T 2dnz_A 25 IFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 89 (95)
T ss_dssp HHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCC
T ss_pred HHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999876553
No 6
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-15 Score=113.21 Aligned_cols=66 Identities=27% Similarity=0.356 Sum_probs=62.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||++||+++|.+++|+|++|+++.....
T Consensus 32 ~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 32 AFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKES 97 (102)
T ss_dssp HHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCCC
T ss_pred HhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999998776543
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=112.17 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=61.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||++||+++|.+++|.|++|+++.....
T Consensus 28 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 93 (99)
T 1whw_A 28 LFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQ 93 (99)
T ss_dssp HHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTCC
T ss_pred HHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccccc
Confidence 589999999999999999999999999999999999999999999999999999999998876543
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=111.39 Aligned_cols=65 Identities=26% Similarity=0.557 Sum_probs=61.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||+ ||+++|++++|+|++|+++.....
T Consensus 30 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~~ 94 (99)
T 2dgs_A 30 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSS 94 (99)
T ss_dssp HHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCCC
T ss_pred HHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcccCC
Confidence 58999999999999999999999999999999999999998 999999999999999998776543
No 9
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=9e-16 Score=117.03 Aligned_cols=62 Identities=11% Similarity=0.275 Sum_probs=59.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC-eEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD-RVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~G-r~I~V~~A~~k~ 62 (255)
||++||+|++|+|++|+.|++++|||||+|.++++|++||++||+++|.+ ++|.|++|.++.
T Consensus 32 ~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 32 LFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp HHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHH
T ss_pred HHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhh
Confidence 58999999999999999999999999999999999999999999999999 999999998753
No 10
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-15 Score=111.79 Aligned_cols=65 Identities=31% Similarity=0.409 Sum_probs=61.4
Q ss_pred CCCCCccceEE-EEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDL-KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V-~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++| +|++++.|+++++||||+|.++++|++||+.||+++|.+++|.|++|.++....
T Consensus 25 ~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 25 TFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 90 (96)
T ss_dssp HHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCC
T ss_pred HHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCC
Confidence 58999999999 999999999999999999999999999999999999999999999999877554
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=109.90 Aligned_cols=62 Identities=24% Similarity=0.490 Sum_probs=57.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||+.||+++|.+++|.|++|++++
T Consensus 26 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 26 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred HHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence 58999999999999999999999999999999999999999999999999999999998763
No 12
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=6.3e-15 Score=107.35 Aligned_cols=62 Identities=19% Similarity=0.432 Sum_probs=59.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
+|++||+|++|.|+.++.|+++++||||+|.++++|++||+.||+.+|.+++|.|++|++++
T Consensus 21 ~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 21 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp HHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 58999999999999999999999999999999999999999999999999999999999875
No 13
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=5.3e-15 Score=114.75 Aligned_cols=66 Identities=20% Similarity=0.393 Sum_probs=61.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||++||+++|.+++|+|++|+++.....
T Consensus 45 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 110 (115)
T 2cpz_A 45 MFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKS 110 (115)
T ss_dssp HHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCCC
T ss_pred HHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCCC
Confidence 589999999999999999999999999999999999999999999999999999999998766543
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=9.7e-16 Score=115.18 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=58.7
Q ss_pred CCCCCc-cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLT-HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREM-HGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG-~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~l-nG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++|| +|++|+|++|+.|++++|||||+|.++++|++||+.| |+.+|.+++|.|++|++++..
T Consensus 21 ~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 21 QLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp HHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred HHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 588999 8999999999999999999999999999999999987 456899999999999987654
No 15
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.9e-15 Score=112.88 Aligned_cols=65 Identities=25% Similarity=0.488 Sum_probs=61.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||++||+++|++++|+|++|+++....
T Consensus 32 ~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 32 VFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNR 96 (102)
T ss_dssp HHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCC
T ss_pred HHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 58899999999999999999999999999999999999999999999999999999999876553
No 16
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4e-15 Score=113.17 Aligned_cols=65 Identities=29% Similarity=0.408 Sum_probs=61.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||++||+++|++++|.|++|+++....
T Consensus 33 ~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 33 VFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDL 97 (103)
T ss_dssp HHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSCC
T ss_pred HHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999766554
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5e-15 Score=112.82 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=61.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||++||+++|.+++|+|++|+++....
T Consensus 35 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 35 LFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNL 99 (105)
T ss_dssp HHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCCC
T ss_pred HHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcCC
Confidence 58999999999999999999999999999999999999999999999999999999999876553
No 18
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.55 E-value=1.4e-15 Score=113.43 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=55.6
Q ss_pred CCCCCc--cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLT--HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG--~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++|| +|++|+|+.|+.|++++|||||+|.+.++|++||++||+++|++++|+|+++.++...
T Consensus 21 ~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 21 AVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH 86 (90)
T ss_dssp HHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred HHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence 589999 9999999999999999999999999999999999999999999999999999987644
No 19
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=5.6e-15 Score=118.15 Aligned_cols=65 Identities=18% Similarity=0.369 Sum_probs=61.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||++||+++|.+++|+|++|+++....
T Consensus 62 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 62 LFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRP 126 (139)
T ss_dssp HHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCC
T ss_pred HHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 58899999999999999999999999999999999999999999999999999999999876654
No 20
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.54 E-value=3.8e-15 Score=117.22 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=61.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||++||+++|++++|.|++|+++....
T Consensus 42 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 42 KFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPK 106 (126)
T ss_dssp HHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSCC
T ss_pred HHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999876554
No 21
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=110.93 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=58.2
Q ss_pred CCCCCccceEEEEeecCCCC---CCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSG---RPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg---~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++++.|+ +++|||||+|+++++|++||+.||+++|++++|.|++|+++..
T Consensus 38 ~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 38 YFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp TTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred HhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 69999999999999998754 5669999999999999999999999999999999999998764
No 22
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.8e-15 Score=112.63 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=60.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||++||+++|.+++|.|++|+++..
T Consensus 43 ~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 43 KFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 105 (106)
T ss_dssp HHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred HHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence 589999999999999999999999999999999999999999999999999999999998754
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.54 E-value=9.6e-15 Score=113.14 Aligned_cols=65 Identities=23% Similarity=0.459 Sum_probs=61.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||++||+++|.++.|.|++|+++....
T Consensus 35 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 35 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCS
T ss_pred HHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999876554
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=110.08 Aligned_cols=63 Identities=19% Similarity=0.483 Sum_probs=59.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++ ++++++||||+|.++++|++||++||+++|.+++|+|++|+++...
T Consensus 37 ~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 37 ICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPSS 99 (100)
T ss_dssp HHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSCC
T ss_pred HHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 58999999999999997 9999999999999999999999999999999999999999987643
No 25
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.53 E-value=6e-15 Score=112.48 Aligned_cols=60 Identities=13% Similarity=0.348 Sum_probs=55.9
Q ss_pred CCCCCcc--ceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCC----eeCCeEEEEEeccc
Q 025249 1 MQQCLTH--NNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR----EFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~--I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~----~i~Gr~I~V~~A~~ 60 (255)
||++||+ |++|+|++|+.|+++||||||+|.++++|++||+.||+. .|++++|.|++|+.
T Consensus 29 ~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 29 ALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 5899995 679999999999999999999999999999999999997 49999999999975
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=108.84 Aligned_cols=64 Identities=28% Similarity=0.468 Sum_probs=60.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|+.+ ++++++||||+|.++++|++||++||+++|.+++|.|++|+++.....
T Consensus 35 ~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 35 AFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQS 98 (103)
T ss_dssp TTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCCC
T ss_pred HHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCCC
Confidence 7999999999999998 899999999999999999999999999999999999999998776544
No 27
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=108.06 Aligned_cols=59 Identities=20% Similarity=0.399 Sum_probs=57.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||+.||+++|.+++|+|++|+
T Consensus 36 ~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 36 IFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 58999999999999999999999999999999999999999999999999999999985
No 28
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=111.92 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=61.2
Q ss_pred CCCCCccce--------EEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNN--------DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~--------~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|+ .|+|++++.|+++++||||+|.++++|++||+.||+++|.+++|.|++|+++....
T Consensus 35 ~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 35 FFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp HHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCST
T ss_pred HHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCCC
Confidence 589999999 69999999999999999999999999999999999999999999999999877654
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=110.62 Aligned_cols=66 Identities=15% Similarity=0.357 Sum_probs=61.7
Q ss_pred CCCCCccceEEEEeec-CCCCCCCcEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLE-RDSGRPRGFGFITYADRRAMDDAIREM-HGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~D-k~Tg~srGfaFVtF~~~e~a~~AI~~l-nG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|+++ +.++++++||||+|.++++|++||+.| |+++|.+++|.|++|+++.....
T Consensus 35 ~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 35 LFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQS 102 (107)
T ss_dssp HHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCCC
T ss_pred HHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCCC
Confidence 5899999999999999 889999999999999999999999999 99999999999999998776543
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=110.92 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=61.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc------CCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH------GREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln------G~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||+.|| +++|++++|.|++|.++.....
T Consensus 35 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 35 VLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp HHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCCC
T ss_pred HHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCCC
Confidence 58999999999999999999999999999999999999999999 9999999999999998776543
No 31
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=1.2e-14 Score=109.32 Aligned_cols=63 Identities=22% Similarity=0.479 Sum_probs=60.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+.++.|+++++||||+|.+.++|++||++||+.+|.++.|.|++|+++..
T Consensus 22 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 22 LCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999998654
No 32
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=109.60 Aligned_cols=64 Identities=19% Similarity=0.391 Sum_probs=59.9
Q ss_pred CCCCCccceEEEEeecCCC-CCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDS-GRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~T-g~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++|| |++|+|++++.| +++++||||+|.++++|++|| +||+++|.+++|.|++|+++.....
T Consensus 35 ~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~~ 99 (104)
T 1wi8_A 35 FFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDKDS 99 (104)
T ss_dssp HTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCCCC
T ss_pred HHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCCCC
Confidence 589999 999999999998 999999999999999999999 8999999999999999998876543
No 33
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=2.2e-14 Score=136.54 Aligned_cols=66 Identities=21% Similarity=0.434 Sum_probs=62.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|+.|+||+++.|++++|||||+|.++++|++||++||+++|.+++|.|++|+++....+
T Consensus 122 ~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred HHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCC
Confidence 699999999999999999999999999999999999999999999999999999999998776544
No 34
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=111.10 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=59.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||+.||+ +|.+++|+|++|.++....
T Consensus 37 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 37 YFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAKPR 100 (116)
T ss_dssp HHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCCCC
T ss_pred HHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCCcc
Confidence 589999999999999999999999999999999999999999998 8999999999998765443
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=1e-14 Score=111.29 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=60.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCee---CCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF---GDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i---~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||++||+++| .+++|.|++|.++....
T Consensus 33 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 33 LFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGG 100 (106)
T ss_dssp HHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCCC
T ss_pred HHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccccC
Confidence 589999999999999999999999999999999999999999999988 89999999999876553
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=108.27 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=57.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||++||+++|++++|+|++|++
T Consensus 35 ~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 35 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred HHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 589999999999999999999999999999999999999999999999999999999874
No 37
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=1.3e-14 Score=111.50 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=60.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+.++.|+++++||||+|.+.++|++||+.||+++|++++|.|++|+++..
T Consensus 46 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 46 KFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp HHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred HHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 589999999999999999999999999999999999999999999999999999999998764
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-14 Score=109.21 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=60.2
Q ss_pred CCCCCccceEEEEeecCC---CCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERD---SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~---Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.++. |+++++||||+|.++++|++||++||+++|++++|.|++|+++....
T Consensus 25 ~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 25 VFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 92 (98)
T ss_dssp HHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred HHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence 589999999999999987 77999999999999999999999999999999999999999876554
No 39
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.51 E-value=1.3e-14 Score=116.09 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=60.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++++.|+++++||||+|+++++|++||++||+.+|++++|.|++|+++..
T Consensus 66 ~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 66 VFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRP 128 (129)
T ss_dssp HHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSSC
T ss_pred HHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 589999999999999999999999999999999999999999999999999999999988653
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=2.3e-14 Score=109.11 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=59.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC---eEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD---RVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~G---r~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++++ ++++++||||+|.++++|++||++||+++|.+ ++|.|++|+++....
T Consensus 35 ~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 35 LFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp HHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred HHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcccC
Confidence 58999999999999997 89999999999999999999999999999998 999999999877654
No 41
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=3.4e-14 Score=108.11 Aligned_cols=63 Identities=17% Similarity=0.474 Sum_probs=58.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++|+ |++|+|++++.|++++|||||+|+++++|++|| +||+++|.+++|.|++|+++....
T Consensus 35 ~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dng_A 35 IFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQDK 97 (103)
T ss_dssp HTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCCC
T ss_pred HHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCCC
Confidence 589996 999999999999999999999999999999999 899999999999999999876553
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=1.3e-14 Score=106.06 Aligned_cols=59 Identities=27% Similarity=0.390 Sum_probs=56.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||++||+++|.+++|.|++|+
T Consensus 27 ~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 27 AFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 58999999999999999999999999999999999999999999999999999999985
No 43
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3e-14 Score=110.65 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=60.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|+.++.|++++|||||+|.++++|++||+. |+++|++++|.|++|+++.....
T Consensus 47 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~~~ 111 (116)
T 1x4b_A 47 YYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGS 111 (116)
T ss_dssp HHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCCCC
T ss_pred HHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccCCC
Confidence 589999999999999999999999999999999999999997 99999999999999998876543
No 44
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=110.78 Aligned_cols=63 Identities=21% Similarity=0.411 Sum_probs=59.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++ |+++++||||+|.+.++|++||++||+++|++++|+|++|+++...
T Consensus 27 ~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 27 VFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred HHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 58999999999999997 9999999999999999999999999999999999999999976644
No 45
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.6e-14 Score=106.00 Aligned_cols=64 Identities=27% Similarity=0.466 Sum_probs=58.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|+.++.+ +++||||+|.++++|++||++||+++|++++|.|++|+++.....
T Consensus 35 ~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 35 MFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNS 98 (103)
T ss_dssp HGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCCCC
T ss_pred HHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCCC
Confidence 5899999999999998654 899999999999999999999999999999999999998776543
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.1e-14 Score=108.35 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=56.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|++|+.| ++||||+|.++++|++||++||+++|.+++|+|++|+++...
T Consensus 33 ~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 33 AFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASGP 93 (96)
T ss_dssp HHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSCC
T ss_pred hccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 5889999999999999877 789999999999999999999999999999999999887644
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=111.20 Aligned_cols=62 Identities=23% Similarity=0.592 Sum_probs=59.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|+.++.|++++|||||+|.++++|++||+.||+.+|.+++|.|++|+++.
T Consensus 46 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 46 IFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp HHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred HHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 58999999999999999999999999999999999999999999999999999999999875
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.49 E-value=3.1e-14 Score=104.93 Aligned_cols=61 Identities=21% Similarity=0.428 Sum_probs=58.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++|| +||+++|.+++|.|++|+++.
T Consensus 26 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 26 HFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp HHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTTS
T ss_pred HHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCCC
Confidence 5899999999999999999999999999999999999999 899999999999999998754
No 49
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.9e-14 Score=108.23 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=58.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|.|+.++.|+++++||||+|.++++|++||++||+++|.+++|+|+++..+.
T Consensus 35 ~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 35 FFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp HTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred HHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 58999999999999999999999999999999999999999999999999999999998653
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.49 E-value=2.8e-14 Score=111.38 Aligned_cols=62 Identities=19% Similarity=0.417 Sum_probs=56.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|++|+. .+||||||+|+++++|++||++||+++|.+++|.|++|+++...
T Consensus 25 ~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 25 TFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 86 (115)
T ss_dssp HHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-
T ss_pred HHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccc
Confidence 689999999999999854 47999999999999999999999999999999999999887654
No 51
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=105.71 Aligned_cols=63 Identities=11% Similarity=0.307 Sum_probs=58.6
Q ss_pred CCCCCccceEEEEeecCCCCC-CCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGR-PRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~-srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+.++.|+. +++||||+|.++++|++||++||+.+|.++.|.|++|.++..
T Consensus 24 ~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 24 IFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWP 87 (88)
T ss_dssp HHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCCC
T ss_pred HHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCCC
Confidence 589999999999999988866 999999999999999999999999999999999999987653
No 52
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=109.43 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=60.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|+.++.|+++++||||+|+++++|++||+. |+++|++++|.|++|+++.....
T Consensus 36 ~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 36 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQPS 100 (105)
T ss_dssp HHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCCTT
T ss_pred HHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCCCC
Confidence 589999999999999999999999999999999999999997 99999999999999998776543
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=107.40 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=56.9
Q ss_pred CCCCCccceE--------EEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNND--------LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~--------V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
||++||+|++ |+|++++.|++++|||||+|.+.++|++||+.||+++|.+++|+|++|+
T Consensus 33 ~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 33 YFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 5899999999 9999999999999999999999999999999999999999999999985
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=108.25 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=59.3
Q ss_pred CCCCCccce-EEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeE----EEEEecccCCC
Q 025249 1 MQQCLTHNN-DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV----ISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~-~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~----I~V~~A~~k~~ 63 (255)
||++||+|+ +|+|++++.|+++++||||+|.++++|++||+.||+++|.++. |+|++|++...
T Consensus 29 ~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 29 AFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp HHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred HHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence 588999999 9999999999999999999999999999999999999999999 99999987643
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=3.7e-14 Score=108.30 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=55.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
||++||+|++|+|++++ |+++++||||+|.++++|++||++||+++|.+++|+|++|.
T Consensus 49 ~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 49 LFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 58999999999999998 99999999999999999999999999999999999999986
No 56
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-14 Score=108.88 Aligned_cols=64 Identities=27% Similarity=0.626 Sum_probs=60.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++.|+++++||||+|.+.++|++||+.||+++|.++.|.|++|.++...
T Consensus 28 ~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 28 IFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred HHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence 5899999999999999999999999999999999999999999999999999999999976543
No 57
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.48 E-value=2.3e-14 Score=107.00 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=57.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
||++||+|++|.|+.++.++++++||||+|.++++|++||++||+++|.+++|+|+++.+
T Consensus 35 ~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 35 FFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp HTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred HHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 589999999999999999999999999999999999999999999999999999999864
No 58
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=6.2e-14 Score=108.68 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=56.3
Q ss_pred CCCCCccceEEEEeecCCC-CCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDS-GRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~T-g~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
+|++||+|++|+|++++.+ ++++|||||+|.++++|++||++||+..|++++|.|+++.+
T Consensus 33 ~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 33 ECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 4899999999999999765 68999999999999999999999999999999999999975
No 59
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=7.5e-14 Score=107.73 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=58.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|++++ ++++++||||+|.++++|++||++||+++|++++|.|++|++....
T Consensus 35 ~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 35 VFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCCC
T ss_pred HHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCCC
Confidence 58999999999999997 6899999999999999999999999999999999999999865444
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=3.4e-14 Score=110.51 Aligned_cols=59 Identities=17% Similarity=0.390 Sum_probs=56.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||+.||+++|++++|+|++++
T Consensus 60 ~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 60 TFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 58999999999999999999999999999999999999999999999999999999874
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.8e-14 Score=105.64 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=57.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.++.+ +++||||+|.++++|++||+.||+++|.+++|.|++|+++....
T Consensus 35 ~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 35 LFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 97 (103)
T ss_dssp HHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCCC
T ss_pred HHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcccc
Confidence 5889999999999998655 68999999999999999999999999999999999999866543
No 62
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-14 Score=110.68 Aligned_cols=62 Identities=19% Similarity=0.397 Sum_probs=58.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++|| +||+++|.++.|.|++|+++..
T Consensus 45 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 106 (114)
T 2cq4_A 45 FFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKN 106 (114)
T ss_dssp HHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHHH
T ss_pred HHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCcc
Confidence 5899999999999999999999999999999999999999 8999999999999999987543
No 63
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.46 E-value=8.6e-14 Score=107.67 Aligned_cols=63 Identities=22% Similarity=0.417 Sum_probs=58.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++.|++++|||||+|.++++|++||+.|+ ++|+++.|.|++|.++...
T Consensus 45 ~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 45 YFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp HHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEECCCCCCC
T ss_pred HHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEccCCCCC
Confidence 58999999999999999999999999999999999999999775 9999999999999987654
No 64
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=2e-14 Score=106.46 Aligned_cols=63 Identities=25% Similarity=0.564 Sum_probs=55.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++.|+++++||||+|.+++ |++||++||+.+|.+++|.|++|.++...
T Consensus 21 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 21 LFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp THHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred HHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 6889999999999999999999999999999999 99999999999999999999999876544
No 65
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.6e-14 Score=107.25 Aligned_cols=64 Identities=22% Similarity=0.446 Sum_probs=59.6
Q ss_pred CCCC-CccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCe-eCCeEEEEEecccCCCCC
Q 025249 1 MQQC-LTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGRE-FGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfek-FG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~-i~Gr~I~V~~A~~k~~~~ 65 (255)
||++ ||+|++|+|++++ |+++++||||+|.++++|++||++||++. |++++|.|++|.++....
T Consensus 29 ~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 29 FFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 94 (104)
T ss_dssp HHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCC
T ss_pred HHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCC
Confidence 5788 9999999999998 99999999999999999999999999999 999999999998876554
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.46 E-value=3.4e-14 Score=117.38 Aligned_cols=61 Identities=15% Similarity=0.332 Sum_probs=58.5
Q ss_pred CCCCCc--cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLT--HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG--~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
||++|| +|++|+|++|+.|++++|||||+|.+.++|++||+.||+++|.++.|.|++|.++
T Consensus 75 ~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 75 VIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred HHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 589999 9999999999999999999999999999999999999999999999999999764
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.46 E-value=6.1e-14 Score=115.88 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=59.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|+.|.|++++.|+++++||||+|.+.++|++||++||+++|.+++|.|.+|.++....
T Consensus 92 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 92 KFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999876543
No 68
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=104.47 Aligned_cols=60 Identities=23% Similarity=0.509 Sum_probs=55.0
Q ss_pred CccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 5 LTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 5 FG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
|..+++|+|++++.|+++++||||+|.++++|++||+.||+++|.+++|+|++|+++...
T Consensus 36 F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 36 FDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp STTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred hcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 334568999999999999999999999999999999999999999999999999987755
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=6.8e-14 Score=104.47 Aligned_cols=59 Identities=22% Similarity=0.417 Sum_probs=55.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
||++||+|++|+|+.++. +++++||||+|.++++|++||+.||+++|++++|.|++|+.
T Consensus 36 ~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 36 LFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp HHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 589999999999999975 89999999999999999999999999999999999999864
No 70
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.45 E-value=1.2e-13 Score=108.33 Aligned_cols=63 Identities=29% Similarity=0.529 Sum_probs=59.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++|| +||+++|.++.|.|+++++....
T Consensus 56 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 56 HFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMPG 118 (124)
T ss_dssp HHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCSS
T ss_pred HHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCCC
Confidence 5899999999999999999999999999999999999999 79999999999999999875543
No 71
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=105.89 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=55.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.+ .++++||||+|+++++|++||++||+++|++++|+|++|+++....
T Consensus 42 ~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 42 VFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 103 (109)
T ss_dssp HHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCCC
T ss_pred HHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCCC
Confidence 5899999999999664 4589999999999999999999999999999999999999876543
No 72
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=7.1e-15 Score=114.37 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCCCccceE--------EEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNND--------LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~--------V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++ |+|++++.|+++++||||+|.++++|++||++||+++|.+++|.|++|+++....
T Consensus 27 ~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 27 YFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFN 99 (116)
Confidence 6999999999 9999999999999999999999999999999999999999999999999877653
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.3e-14 Score=104.24 Aligned_cols=59 Identities=14% Similarity=0.318 Sum_probs=55.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
||++||+|++|+|+.++.|+++++||||+|.++++|++||++||+++|.++.|+|+++.
T Consensus 25 ~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 25 LCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp TSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 69999999999999999999999999999999999999999999999999998876654
No 74
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=3e-14 Score=124.55 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=58.5
Q ss_pred CCCCCc--cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLT--HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG--~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
||++|| +|++|+|++|+.|+++||||||+|+++++|++||++||+++|++++|+|++|+++
T Consensus 88 ~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 88 AVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp HHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred HHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 689999 9999999999999999999999999999999999999999999999999999754
No 75
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=102.11 Aligned_cols=60 Identities=17% Similarity=0.366 Sum_probs=56.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++| +|++|+|+++ .+++++|||||+|.++++|++||+ ||+++|.++.|+|.+|++++.
T Consensus 30 ~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 30 FLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp HHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCCC
T ss_pred HHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCCC
Confidence 58999 9999999999 899999999999999999999999 999999999999999998754
No 76
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.44 E-value=7.5e-14 Score=113.69 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=61.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++|+.|++++|||||+|.+.++|++||++||+++|.+++|.|++|+++....
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999876543
No 77
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=1.6e-13 Score=107.78 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=59.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++ |+++++||||+|.++++|++||+.||+++|.+++|+|++|.+....
T Consensus 55 ~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 55 LFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp HHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred HHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence 58999999999999998 9999999999999999999999999999999999999999876544
No 78
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2e-13 Score=105.52 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=57.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCee--------CCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF--------GDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i--------~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|++++ |+++++||||+|.++++|++||+.||+++| .+++|.|++|.|+.
T Consensus 45 ~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 45 MLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPSS 113 (114)
T ss_dssp TTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCSC
T ss_pred HHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCCC
Confidence 79999999999999998 999999999999999999999999999999 57889999999753
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.43 E-value=7.6e-14 Score=106.01 Aligned_cols=60 Identities=22% Similarity=0.431 Sum_probs=56.9
Q ss_pred CCCCCccceEEEEeecC-CCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLER-DSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk-~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++|| |++|+|++++ .|++++|||||+|.+.++|++|| +||+.+|.++.|.|++|+++.
T Consensus 39 ~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 39 FFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp HSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred HHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 589999 9999999998 69999999999999999999999 899999999999999998764
No 80
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=105.10 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=54.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++|| |++|+|++|+ |++++|||||+|+++++|++||+ ||+++|.++.|+|.++.+..
T Consensus 35 ~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 35 FFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp SSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCC
T ss_pred HHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCC
Confidence 699999 5599999997 99999999999999999999995 89999999999999988765
No 81
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=4.1e-14 Score=101.37 Aligned_cols=57 Identities=23% Similarity=0.538 Sum_probs=54.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A 58 (255)
||++||+|++|+|+.++.|++++|||||+|.++++|++||+ ||+++|++++|.|++|
T Consensus 19 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 19 YFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58899999999999999999999999999999999999998 9999999999999876
No 82
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.3e-13 Score=103.32 Aligned_cols=64 Identities=11% Similarity=0.251 Sum_probs=58.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|+.++.|++++|||||+|.++++|++||++ +++|+++.|.|++|.++.....
T Consensus 35 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cqg_A 35 YFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNSKQSQDS 98 (103)
T ss_dssp HHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECCCTTCCCCC
T ss_pred HHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEecCCCCcCCC
Confidence 589999999999999999999999999999999999999984 5699999999999998776543
No 83
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.43 E-value=5.6e-14 Score=113.06 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=61.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.++.|++++|||||+|.++++|++||++||+++|.+++|+|++|+++....
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 58999999999999999999999999999999999999999999999999999999999866543
No 84
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=1.6e-13 Score=100.92 Aligned_cols=57 Identities=28% Similarity=0.514 Sum_probs=53.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A 58 (255)
||++||+|++|+|+.++.|++++|||||+|.++++|++||+ +++++|++++|.|++|
T Consensus 31 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 31 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999997 5888999999999986
No 85
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.42 E-value=1.3e-13 Score=102.32 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+++ ++++++||||+|.++++|++||++||+++|++++|+|++|+++...
T Consensus 28 ~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 28 KFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASGP 89 (92)
T ss_dssp HHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSSC
T ss_pred HHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCCC
Confidence 5899999999999984 8899999999999999999999999999999999999999987654
No 86
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=7.8e-14 Score=100.06 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=55.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
+|++||+|++|.|+.++.|++++|||||+|.++++|++||+.|| ++|++++|.|++|.
T Consensus 20 ~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 20 YFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp HHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred HHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 58999999999999999999999999999999999999999999 99999999999873
No 87
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-14 Score=113.28 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=58.9
Q ss_pred CCCCCccceE--EEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCC----eeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNND--LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR----EFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~--V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~----~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|+. |+|++|+.|+++||||||+|.++ +|++||+.||++ +|++++|.|++|+++...
T Consensus 43 ~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 43 ALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp HHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred HHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 5899999977 99999999999999999999999 999999999999 999999999999986544
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.2e-14 Score=106.42 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=59.6
Q ss_pred CCCCCcc-ceEEEEe-ecCCCCCCCcEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTH-NNDLKIM-LERDSGRPRGFGFITYADRRAMDDAIREMH--GREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~-I~~V~Iv-~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln--G~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+ |++|.|+ .++.|+++++||||+|.++++|++||+.|| +++|.+++|.|++|+++....
T Consensus 28 ~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~~ 96 (109)
T 2dis_A 28 EIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVD 96 (109)
T ss_dssp HHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCSTT
T ss_pred HHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCcC
Confidence 5889998 9999999 899999999999999999999999999996 589999999999999876643
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=109.55 Aligned_cols=58 Identities=28% Similarity=0.388 Sum_probs=55.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A 58 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||+.||+++|.+++|+|++|
T Consensus 83 ~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 83 AFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999999999999999999999999999986
No 90
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=1.8e-13 Score=105.94 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=55.4
Q ss_pred CCCCCccceEEEEeecCCC--CCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDS--GRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~T--g~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
+|++||+|++|+|++++.+ .+++||+||+|+++++|++||++||++.|++++|.|+++.+
T Consensus 35 ~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 35 ECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4789999999999999765 47899999999999999999999999999999999999864
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.6e-13 Score=104.81 Aligned_cols=60 Identities=28% Similarity=0.515 Sum_probs=55.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|+.++. .+++||||+|.+.++|++||++||+++|++++|.|++|+++.
T Consensus 49 ~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 49 MFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp HGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred HHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence 589999999999999854 489999999999999999999999999999999999998763
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=105.53 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=55.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDR-VISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr-~I~V~~A~~k~ 62 (255)
||++||+|++|.|+ +.|++++|||||+|.++++|++||+.||+++|.++ +|.|++|....
T Consensus 41 ~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 41 IFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp HHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred HHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 58999999999998 47899999999999999999999999999999998 99999998654
No 93
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.1e-12 Score=98.78 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=53.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+ ++++||||+|.++++|++||++||+++|.+++|+|++|+++....
T Consensus 33 ~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 33 AFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLD 91 (97)
T ss_dssp HHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCCC
T ss_pred HHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCCC
Confidence 58999999999995 468999999999999999999999999999999999999876554
No 94
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5.9e-13 Score=102.40 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=53.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC-----eEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD-----RVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~G-----r~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+++ +||||+|+++++|++||++||+++|.+ ++|+|++|+++....
T Consensus 35 ~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 35 HMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp HHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCCC
T ss_pred HHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCCC
Confidence 5899999999999987 899999999999999999999999999 999999999876543
No 95
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=8.2e-13 Score=99.88 Aligned_cols=61 Identities=21% Similarity=0.396 Sum_probs=53.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+| +|+.+ .++++++||||+|.++++|++||+.||+++|.+++|+|++|+++....
T Consensus 35 ~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 35 VFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 95 (101)
T ss_dssp HCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCCC
T ss_pred HHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCCC
Confidence 47777765 67777 789999999999999999999999999999999999999999876543
No 96
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.38 E-value=3e-13 Score=102.37 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=50.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
||++||+|++|+|+. +||||||+|.++++|++||+.||+.+|.+++|.|++|.
T Consensus 27 lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 27 LCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 689999999999976 68999999999999999999999999999999999994
No 97
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=3.1e-13 Score=104.38 Aligned_cols=55 Identities=9% Similarity=0.207 Sum_probs=52.1
Q ss_pred CCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 025249 3 QCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58 (255)
Q Consensus 3 ekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A 58 (255)
++||+|++|+|++++. ++++|||||+|.++++|++||++||++.|++++|.|+++
T Consensus 49 ~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred ccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 8999999999999854 789999999999999999999999999999999999986
No 98
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.1e-13 Score=106.10 Aligned_cols=60 Identities=12% Similarity=0.281 Sum_probs=56.4
Q ss_pred CCCCCccc-eEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHN-NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I-~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||.| ++|+|++|+ |++++|||||+|.++++|++||+. |+++|.++.|.|.+|.++.
T Consensus 35 ~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 35 FLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp HTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred HHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 58999999 899999998 999999999999999999999986 9999999999999998655
No 99
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.5e-13 Score=104.66 Aligned_cols=58 Identities=5% Similarity=0.076 Sum_probs=54.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
+|++||+|++|.|++|+. ++++|||||+|+++++|++||+ ||+++|+++.|.|.++..
T Consensus 31 ~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 31 WLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp HHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred HHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 589999999999999987 9999999999999999999999 999999999999998764
No 100
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=2.6e-13 Score=108.67 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=54.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|.|+. |++++|||||+|.+.++|++||++||+++|.+++|.|++|+++..
T Consensus 53 ~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 53 LASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp HHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred HhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 589999999998854 678999999999999999999999999999999999999987653
No 101
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.8e-14 Score=109.62 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=56.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|.+|.++.|++++|||||+|.++++|++||+ ||+++|.++.|.|.+|.++.
T Consensus 45 ~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 45 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp HSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHH
T ss_pred HHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHH
Confidence 59999999998888888999999999999999999999999 99999999999999998643
No 102
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=101.24 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=54.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
+|++||+|++|.| .++. ++|||||+|.++++|++||+.||++.|++++|.|++|.++....
T Consensus 46 ~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 46 ECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp HGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSS
T ss_pred HHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcc
Confidence 5899999999955 5543 79999999999999999999999999999999999999876543
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.7e-13 Score=105.88 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=56.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|+.|.|..+..|+++++||||+|.++++|++||+.||+++|.+++|.|++|+++.....
T Consensus 45 ~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 45 LFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRSS 110 (115)
T ss_dssp HTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCCC
T ss_pred HHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCCC
Confidence 588999996554444444889999999999999999999999999999999999999998766543
No 104
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=97.08 Aligned_cols=57 Identities=23% Similarity=0.407 Sum_probs=52.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+ ++||||+|.++++|++||++||+++|++++|.|++|+++....
T Consensus 28 ~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 84 (90)
T 2dnq_A 28 LFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKAS 84 (90)
T ss_dssp HHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCCC
T ss_pred HHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCCC
Confidence 58999999999998 4799999999999999999999999999999999999877654
No 105
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.1e-12 Score=105.52 Aligned_cols=60 Identities=20% Similarity=0.469 Sum_probs=57.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
||++||+|++|.|+.++.|++++|||||+|.++++|++||++||+.+|.+++|.|++|++
T Consensus 107 ~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 107 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 589999999999999999999999999999999999999999999999999999999974
No 106
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.35 E-value=9.5e-13 Score=110.80 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=60.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|+.|+|+.++.|+++++||||+|.++++|++||++||+++|.++.|.|++|.++...
T Consensus 145 ~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 145 VFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999987544
No 107
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=9.8e-13 Score=102.60 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=53.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
||++| +|++|+|++|+. ++++|||||+|.++++|++|| +||+++|.++.|+|..|.++
T Consensus 36 ~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 36 FFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred HhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 58999 999999999975 999999999999999999999 59999999999999998764
No 108
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=9.1e-13 Score=99.06 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=52.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeC--CeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG--DRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~--Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+++ ++||||+|.++++|++||++||+++|. +++|.|++|+++..
T Consensus 37 ~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 37 EFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp HHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred HHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 5899999999999864 689999999999999999999999999 99999999998754
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=4.6e-13 Score=105.05 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=55.7
Q ss_pred CCCCCcc---ceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTH---NNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~---I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+ |++|+|++++. ++++|||||+|.++++|++||+ ||+++|.++.|+|.+|+++.
T Consensus 37 ~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 37 FLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp HTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHH
T ss_pred HHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHH
Confidence 5899999 89999999977 9999999999999999999999 99999999999999987543
No 110
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.34 E-value=1.6e-13 Score=100.01 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=50.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEEE
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDR-VISVN 56 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr-~I~V~ 56 (255)
||++||+|++|.|+ +.|++++|||||+|.++++|++||++||+++|.++ +|+|+
T Consensus 27 ~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 27 IFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred HHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 58999999999988 47899999999999999999999999999999999 88773
No 111
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.6e-13 Score=101.58 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=56.1
Q ss_pred CCCCCccceE-EEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNND-LKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~-V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++ |.|+++ .|++++|||||+|+++++|++||+. |+++|.++.|+|.++.++.-
T Consensus 35 ~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 35 FFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp HTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred HHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence 5899999998 889998 8999999999999999999999996 99999999999999986543
No 112
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=7.8e-14 Score=105.56 Aligned_cols=62 Identities=19% Similarity=0.387 Sum_probs=57.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|+. .||.++.|++++|||||+|.++++|++||+ ||+++|.+++|.|++|+++...
T Consensus 37 ~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 37 AISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDGT 98 (101)
T ss_dssp HHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCCS
T ss_pred HHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCCC
Confidence 5889999999 788888899999999999999999999998 9999999999999999987654
No 113
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.34 E-value=1.8e-13 Score=111.44 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=55.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++|| |++|+|++|++ ++++|||||+|+++++|++|| +||+++|.++.|+|.++.++...
T Consensus 66 ~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 66 FFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp HHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred HHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 589999 78999999976 999999999999999999999 69999999999999999876543
No 114
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.5e-12 Score=95.72 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=52.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+++ ||||+|.++++|++||++||+++|.+++|+|++|+++....
T Consensus 30 ~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 86 (92)
T 2dgt_A 30 KFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 86 (92)
T ss_dssp HHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSCC
T ss_pred HHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCCC
Confidence 5899999999999864 99999999999999999999999999999999999876553
No 115
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.33 E-value=5.6e-13 Score=112.10 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=57.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|.|+.++ |+++++||||+|+++++|++||++||+++|++++|+|++|.+..
T Consensus 108 ~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 108 LFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred HHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 58999999999999998 99999999999999999999999999999999999999998654
No 116
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=7.7e-13 Score=104.78 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=55.0
Q ss_pred CCCCCccceEEEEeecCC----CCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERD----SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~----Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
+|++||+|++|+|++++. |++++||+||+|.++++|++||++||+..|++++|.|+++..
T Consensus 45 ef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 45 ECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 378999999999999865 457889999999999999999999999999999999999864
No 117
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.8e-12 Score=100.21 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=51.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcC--CeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHG--REFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG--~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+++ ++||||+|+++++|++||+.||+ .+|.+++|.|++|++++.-
T Consensus 36 lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 36 LVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRI 95 (102)
T ss_dssp TTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTS
T ss_pred HHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCCC
Confidence 7999999999999976 47999999999999999999986 4599999999999976544
No 118
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.33 E-value=2.6e-12 Score=97.71 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=52.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|++|+|++ +||||+|.++++|++||++||+++|++++|.|++|+++.....
T Consensus 31 ~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 88 (103)
T 2dgu_A 31 AFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 88 (103)
T ss_dssp HHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCCC
T ss_pred HHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccch
Confidence 588999999999985 4999999999999999999999999999999999998766543
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=6.2e-13 Score=100.54 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=55.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.+ +++||||+|.++++|++||++||+.+|.+++|.|++|+++...
T Consensus 20 ~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 20 AFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp HHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred HHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 5889999999999987 7899999999999999999999999999999999999987644
No 120
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=7e-13 Score=107.27 Aligned_cols=61 Identities=33% Similarity=0.601 Sum_probs=58.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|.|+.++.|++++|||||+|.++++|++||+ ||++.|.+++|+|++|+|+.
T Consensus 107 ~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 107 FFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred HHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 58899999999999999999999999999999999999998 89999999999999999863
No 121
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.5e-12 Score=96.99 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=54.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+++ ++||||+|.++++|++||++||+++|.+++|.|++|+++....
T Consensus 35 ~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 93 (99)
T 2cpj_A 35 LFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT 93 (99)
T ss_dssp HTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSCCC
T ss_pred HHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCCCC
Confidence 6899999999999864 6899999999999999999999999999999999999876543
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.6e-12 Score=99.82 Aligned_cols=59 Identities=12% Similarity=0.282 Sum_probs=54.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+.+ ++||||+|.++++|++||+.||+++|.+++|.|++|+++....
T Consensus 45 ~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 45 TFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 103 (109)
T ss_dssp HHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSSC
T ss_pred HHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCCC
Confidence 5889999999999986 6899999999999999999999999999999999999876554
No 123
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=4.1e-12 Score=97.76 Aligned_cols=59 Identities=8% Similarity=0.087 Sum_probs=52.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH--GREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln--G~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|.|+++ |+||||+|+++++|++||+.|+ +.+|.+++|.|++|+++....
T Consensus 35 ~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 35 LGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp TTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred HHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 7999999999999875 7899999999999999999774 678999999999999766543
No 124
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.32 E-value=2.4e-13 Score=97.13 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=53.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 58 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A 58 (255)
||++||+|++|.|++++.|++++|||||+|.++++|++||+ +++.+|.+++|.|++|
T Consensus 19 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 19 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58899999999999999999999999999999999999998 5889999999999876
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.31 E-value=6.6e-13 Score=107.60 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=55.6
Q ss_pred CCCCCcc---ceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLTH---NNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG~---I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
||++||+ |++|+|++|+. ++++|||||+|+++++|++||+ ||+++|.++.|+|.+|.++
T Consensus 64 ~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 64 FLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp HTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred HHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 5899999 89999999987 9999999999999999999999 9999999999999998754
No 126
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=1.8e-12 Score=107.44 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=55.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEV 66 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~~ 66 (255)
||++||+|+.|+|+.++.|++++|||||+|.++++|++||+. ++++|+++.|.|.+|.++.....
T Consensus 124 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 589999999999999999999999999999999999999985 79999999999999999877654
No 127
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.31 E-value=1.7e-12 Score=107.82 Aligned_cols=63 Identities=21% Similarity=0.444 Sum_probs=60.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|.|+.+++|+++++||||+|.++++|++||++||+.+|++++|.|++|+++..
T Consensus 134 ~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 134 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 588999999999999999999999999999999999999999999999999999999998754
No 128
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=9.8e-13 Score=102.42 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=52.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH--GREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln--G~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+++ ||||||+|+++++|++||+.|+ +.+|.+++|.|++|+++....
T Consensus 36 lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 36 LGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp HHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred HHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 6899999999999985 6899999999999999999886 478999999999999876553
No 129
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=98.18 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=52.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|+ |.|+.+ ++++||||+|.++++|++||++||+++|.+++|.|++|+++..
T Consensus 39 ~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 39 ALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp HHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCCC
T ss_pred HHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 588999997 777765 6789999999999999999999999999999999999998754
No 130
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.30 E-value=2.4e-12 Score=100.37 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=48.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeE-----EEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV-----ISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~-----I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+++ +||||+|+++++|++||++||+++|++++ |+|+.+.++...
T Consensus 36 ~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~~~ 97 (115)
T 3beg_B 36 HMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 97 (115)
T ss_dssp HHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC----C
T ss_pred HHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCCCC
Confidence 5899999999999886 89999999999999999999999999988 788877765543
No 131
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.30 E-value=7.1e-13 Score=99.22 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=54.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|.|+. |+++++||||+|.++++|++||+.||+.+|.++.|.|++|+++..
T Consensus 32 ~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 32 IFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred HHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 589999999999874 567889999999999999999999999999999999999998654
No 132
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=94.81 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+++ ||||+|.++++|++||+.||+++|++++|.|++|+++...
T Consensus 29 ~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 29 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred HHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 5889999999999864 9999999999999999999999999999999999987544
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.29 E-value=3.8e-12 Score=102.37 Aligned_cols=63 Identities=22% Similarity=0.498 Sum_probs=59.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||+.||+..|.+++|.|.++.++..
T Consensus 22 ~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 22 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp HHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred HHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 589999999999999999999999999999999999999999999999999999999987653
No 134
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=3.1e-12 Score=101.11 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=53.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|.|+ ++++||||+|++.++|++||++||+.+|.+++|.|++|+++....
T Consensus 57 ~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~~ 115 (121)
T 2bz2_A 57 AFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLD 115 (121)
T ss_dssp HHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC--
T ss_pred HHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCCC
Confidence 58999999999997 478999999999999999999999999999999999999876543
No 135
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.29 E-value=2.3e-12 Score=104.70 Aligned_cols=59 Identities=22% Similarity=0.501 Sum_probs=56.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
+|++||+|+.|.|+.++.|++++|||||+|.++++|++||++||+++|.+++|.|++|.
T Consensus 114 ~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 58899999999999999999999999999999999999999999999999999999884
No 136
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.8e-12 Score=98.01 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=51.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
||++||+|++|+|+ ++++||||+|.+.++|++||+.||+++|++++|.|++|+++
T Consensus 47 ~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 47 LFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp HHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred HHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 58999999999998 36799999999999999999999999999999999999874
No 137
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.5e-12 Score=101.37 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH--GREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln--G~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+++ |+||||+|+++++|++||+.|+ +.+|.+++|.|++|+++....
T Consensus 51 lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 51 LGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp HHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred HHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 6899999999999986 6899999999999999999887 468999999999999876554
No 138
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.28 E-value=3e-12 Score=98.83 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=50.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCe--eCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGRE--FGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~--i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|.|++ .|+||||+|+++++|++||+.||+.. |.+++|.|++|+++.
T Consensus 41 lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 41 ALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 689999999999986 46899999999999999999999875 789999999998764
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.28 E-value=2.9e-12 Score=103.55 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=59.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++++.|++++|||||+|.++++|++||+.||+..|.+++|.|.++.++..
T Consensus 23 ~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 23 LFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE 85 (168)
T ss_dssp HHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS
T ss_pred HHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc
Confidence 589999999999999999999999999999999999999999999999999999999987654
No 140
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.28 E-value=7.9e-13 Score=101.65 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=55.7
Q ss_pred CCCCCcc---ceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTH---NNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~---I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||. |++|+|++++. ++++|||||+|.++++|++||+ ||++.|.++.|+|.+|.++.
T Consensus 31 ~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 31 FFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp HTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred HHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 5889888 99999999987 9999999999999999999999 99999999999999998643
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.28 E-value=3.8e-12 Score=97.86 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=50.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+| +++||||+|+++++|++||++||+++|++++|.|++|+++...
T Consensus 48 ~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 48 IFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp HHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred HHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 5899999999999 4689999999999999999999999999999999999865433
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=4.1e-12 Score=99.92 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH--GREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln--G~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|++ +|+||||+|+++++|++||+.|| ..+|.+++|.|++|+++....
T Consensus 46 lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 46 LAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred HHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 799999999999985 47999999999999999999886 456999999999998776543
No 143
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.27 E-value=4.7e-12 Score=97.85 Aligned_cols=56 Identities=21% Similarity=0.461 Sum_probs=51.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+ ++||||+|.+.++|++||+.||+.+|++++|.|++|+++...
T Consensus 51 ~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 51 IFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp HHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred HHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 58999999999998 589999999999999999999999999999999999987644
No 144
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.27 E-value=1.9e-12 Score=101.42 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=51.4
Q ss_pred CCCCCc-cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLT-HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG-~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++|| +|+.|+|+.+ +++|||||+|+++++|++||++||+++|++++|+|++|+..+
T Consensus 48 ~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 48 LARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp HHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred HHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 588999 8999998653 488999999999999999999999999999999999998654
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.27 E-value=2.5e-12 Score=109.79 Aligned_cols=61 Identities=20% Similarity=0.429 Sum_probs=55.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++|+. .++|||||+|.++++|++||++||+++|++++|.|++|+++.+
T Consensus 123 ~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 123 TFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred HHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 589999999999999853 4799999999999999999999999999999999999987653
No 146
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.27 E-value=4.8e-12 Score=108.01 Aligned_cols=62 Identities=8% Similarity=0.122 Sum_probs=58.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|++|+.|++++|||||+|.++++|++||++||++.|.++.|.|.++....
T Consensus 35 ~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 35 KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred HHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999987544
No 147
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.26 E-value=1.4e-12 Score=98.79 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=55.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++ |++++|||||+|.++++|++||+ |+++|+++.|.|.++.++...
T Consensus 29 ~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~~ 89 (102)
T 2xs2_A 29 FFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQNL 89 (102)
T ss_dssp HHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC--
T ss_pred HHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCcch
Confidence 58999999999999998 99999999999999999999998 899999999999999876654
No 148
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=4e-12 Score=98.22 Aligned_cols=58 Identities=5% Similarity=-0.031 Sum_probs=51.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCC--eeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR--EFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~--~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|.|+++ |+||||+|+++++|++||+.||+. +|.+++|.|++|+++...
T Consensus 35 ~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 35 ALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred HHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 6899999999999874 689999999999999999988754 599999999999876644
No 149
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.3e-12 Score=104.12 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCC----HHH----HHHHHH--HhcCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYAD----RRA----MDDAIR--EMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~----~e~----a~~AI~--~lnG~~i~Gr~I~V~~A~ 59 (255)
||++||+|.+|.|++|++|++++|||||+|.+ +++ |.+||+ +||+..|++++|+|++..
T Consensus 26 ~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 26 YFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 58999999999999999999999999999996 322 788988 789999999999999865
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=4.2e-12 Score=95.46 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=51.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+ ++||||+|.+.++|++||++||+++|.+++|.|++|+++....
T Consensus 31 ~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 87 (96)
T 2kvi_A 31 IFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARPQ 87 (96)
T ss_dssp HHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC--
T ss_pred HHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCCC
Confidence 58999999999995 5899999999999999999999999999999999998766543
No 151
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.25 E-value=9.3e-12 Score=100.41 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=53.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcE-EEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGF-GFITYADRRAMDDAIREMHGREFGD--RVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGf-aFVtF~~~e~a~~AI~~lnG~~i~G--r~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.+ +++| |||+|++.++|++||++||+++|.+ ++|+|++|+++.-.
T Consensus 48 lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 48 IFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 109 (130)
T ss_dssp HHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCC
T ss_pred HHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCcee
Confidence 6999999999998874 3688 9999999999999999999999998 89999999986543
No 152
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.25 E-value=4.8e-12 Score=97.78 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|.|+++. .+++||||+|.+.++|++||+.||+.+|.++.|.|++|+++.
T Consensus 28 ~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 28 IFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp HHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred HHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 58999999999999864 458999999999999999999999999999999999998643
No 153
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4e-12 Score=95.07 Aligned_cols=58 Identities=10% Similarity=0.186 Sum_probs=53.2
Q ss_pred CCCCCccceEE-EEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDL-KIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V-~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++| .|+.++.+++ |||+|.++++|++||+.||+++|.+++|.|++|+++.
T Consensus 35 ~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 35 LLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp HHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred HHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 58899999999 5899877654 9999999999999999999999999999999999874
No 154
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.7e-12 Score=93.23 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=52.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++| +.++.|++ ||||+|.++++|++||+ ||+++|++++|.|++|.++....
T Consensus 28 ~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~~ 86 (94)
T 2e5g_A 28 YFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQS 86 (94)
T ss_dssp HGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCCC
T ss_pred HHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCCC
Confidence 58999999987 77777776 99999999999999999 99999999999999998766543
No 155
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.23 E-value=5e-12 Score=102.39 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=53.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|+.+ ++|||||+|.++++|++||+.||+++|.+++|.|++|+++.
T Consensus 93 ~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 93 AFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 5899999999999987 68999999999999999999999999999999999998864
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.23 E-value=8.3e-12 Score=100.81 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=55.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEec
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD--RVISVNKA 58 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~G--r~I~V~~A 58 (255)
||++||+|+.|.|+.++.++++++||||+|.++++|++||++||+..|.+ ++|+|++|
T Consensus 109 ~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 109 IFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred hhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 58999999999999999999999999999999999999999999999988 99999986
No 157
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.23 E-value=3.8e-12 Score=95.19 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=51.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|..| +.+++++|||||+|.++++|++||+.||+++|.+++|.|++|.++...
T Consensus 36 ~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 36 VFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGT 94 (96)
T ss_dssp HHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCCC
T ss_pred HHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 47777776655 467889999999999999999999999999999999999999887543
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.23 E-value=1.9e-12 Score=104.12 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=53.8
Q ss_pred CCCCCccceEEE--Eee---cCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLK--IML---ERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~--Iv~---Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|+.|. ++. ...|++++|||||+|.+.++|++||+.||+++|.++.|.|++|++....
T Consensus 65 ~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 65 IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp HHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred HHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 589999998851 222 2357899999999999999999999999999999999999999875544
No 159
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.23 E-value=1.3e-11 Score=93.37 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=50.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|+ ++||||+|.+.++|++||++||+.+|.+++|.|++|+++.
T Consensus 43 ~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 43 IFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp HHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred HHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 58999999999984 6899999999999999999999999999999999998754
No 160
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=8.6e-12 Score=98.21 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
+|++||+|++|.|+++. ++||+||+|.+.++|++||++||+..|++++|.|+++..
T Consensus 37 ~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 37 ECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 47999999999997763 589999999999999999999999999999999999863
No 161
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-11 Score=94.99 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=50.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|.|+. +++|||||+|+++++|++||+.++ .+.+++|.|++|+++....
T Consensus 37 ~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 37 LLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp HHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCCCC
T ss_pred HHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCCCC
Confidence 589999999999983 689999999999999999999865 5789999999998776443
No 162
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=6.5e-12 Score=93.50 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=50.2
Q ss_pred CCCCCcc-ceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcC-CeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTH-NNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHG-REFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~-I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG-~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+ |..|.|+ +++||||+|.++++|++||++||+ ++|++++|.|++|+++....
T Consensus 28 ~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 28 LFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLRS 87 (93)
T ss_dssp HHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCCC
T ss_pred HHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccccC
Confidence 5889999 5555553 478999999999999999999999 99999999999999876553
No 163
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=8.2e-12 Score=91.15 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=49.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREM-HGREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~l-nG~~i~Gr~I~V~~A~ 59 (255)
||++||+|++|+|+++ ++||||+|.++++|++||++| |+++|++++|.|++|+
T Consensus 32 ~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 32 HFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 5899999999999974 689999999999999999999 9999999999999985
No 164
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.1e-11 Score=91.82 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=50.9
Q ss_pred CCCCC--ccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCL--THNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekF--G~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++| |+|++|+|+ ++||||+|.+.++|++||+.||+++|.+++|.|++|+++...
T Consensus 35 ~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 35 EFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKD 92 (99)
T ss_dssp HHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCCC
T ss_pred HHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 58899 999999875 469999999999999999999999999999999999987654
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.21 E-value=9.7e-12 Score=104.57 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=55.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|++++.|+++++||||+|.++++|++||+.||++.|.++.|.|.++..+.
T Consensus 48 ~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 48 AFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp HHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred HHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 58999999999999999999999999999999999999999999999999999998887543
No 166
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=6.6e-12 Score=97.40 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=51.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|.|+. +++||||+|.+.++|++||+.||+++|.+++|.|++|....
T Consensus 30 ~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 30 TFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 689999999999875 57899999999999999999999999999999999997543
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.21 E-value=8.1e-12 Score=104.55 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=52.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD--RVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~G--r~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+.+ ++++||||+|++.++|++||++||+++|.+ ++|+|++|+++..
T Consensus 66 ~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 66 IFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp HHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred HHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 6899999999999754 257899999999999999999999999976 9999999998753
No 168
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=1.8e-11 Score=97.82 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=50.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcE-EEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGF-GFITYADRRAMDDAIREMHGREFGD--RVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGf-aFVtF~~~e~a~~AI~~lnG~~i~G--r~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+. + .|| |||+|++.++|++||++||+.+|.+ ++|.|++|+++..
T Consensus 45 ~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 45 VCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp HHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred HHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 699999999999975 2 276 9999999999999999999999988 6899999998753
No 169
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.21 E-value=1.6e-11 Score=90.83 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=50.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++| +|++|+|+ +++|||||+|.++++|++||++||+++|.+++|+|++|..+.
T Consensus 25 ~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 25 LLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 58999 99999985 578999999999999999999999999999999999997654
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.20 E-value=1.2e-11 Score=99.44 Aligned_cols=58 Identities=24% Similarity=0.441 Sum_probs=54.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeE--EEEEec
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV--ISVNKA 58 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~--I~V~~A 58 (255)
||++||+|++|+|+.++.++++++||||+|.++++|++||++||+++|.++. |.|++|
T Consensus 108 ~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 108 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 5899999999999999999999999999999999999999999999999965 888876
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.18 E-value=2e-11 Score=101.07 Aligned_cols=62 Identities=26% Similarity=0.434 Sum_probs=56.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++++.|++++|||||+|.++++|++||+. ++.+|.++.|.|.++.++..
T Consensus 33 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 33 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRED 94 (196)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC---
T ss_pred HHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccc
Confidence 589999999999999999999999999999999999999985 88999999999999987644
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=3.8e-12 Score=101.44 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=53.3
Q ss_pred CCCCCccc----eEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLTHN----NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG~I----~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
||++|++| +.|+|++| .|++++|||||+|+++++|++||+. |+++|.++.|+|..|.++
T Consensus 43 ~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 43 FFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp HHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred HHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 58899875 68999999 5899999999999999999999985 999999999999988754
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.3e-11 Score=97.52 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCee-----CCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF-----GDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i-----~Gr~I~V~~A~~k~~ 63 (255)
+|++||+|++|.|+.+ |+||||+|+++++|++||++||+++| .+++|.|++|+..+.
T Consensus 47 ~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 47 VLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp HHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred HHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 5899999999988753 68999999999999999999999998 689999999986543
No 174
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.17 E-value=1.8e-11 Score=108.38 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=56.1
Q ss_pred CCCCCccceEEEEeecCC-CCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERD-SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~-Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|+.|+|+.++. |+++++||||+|.++++|++|| +||++.|.+++|.|++|++++
T Consensus 231 ~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 231 SFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 589999999999999977 7999999999999999999999 999999999999999999874
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.17 E-value=2.4e-11 Score=104.07 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=52.8
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|+++ ++|||||+|+++++|++||+.||+++|.+++|.|.+|+.+.
T Consensus 25 ~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 25 VFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp HHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred HHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 6899999999999986 47999999999999999999999999999999999997543
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=94.85 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=49.1
Q ss_pred CCCCCccceEEEEeecCCC---CCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDS---GRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~T---g~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
||++||+|+ |.|+.++.| ++++|||||+|+++++|++||++|+ .|+++.|.|..+.+
T Consensus 28 ~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 28 SFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSSPT 87 (114)
T ss_dssp HTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECCSS
T ss_pred HHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccCCC
Confidence 599999999 999999888 7999999999999999999999995 57777777665543
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.17 E-value=3.9e-11 Score=96.29 Aligned_cols=62 Identities=16% Similarity=0.381 Sum_probs=56.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+.++. +++++||||+|.++++|++||+.||+.+|.++.|.|.++.++..
T Consensus 20 ~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 20 YFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp HHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred HHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 589999999999999964 67999999999999999999999999999999999999987654
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.16 E-value=7e-12 Score=100.41 Aligned_cols=58 Identities=21% Similarity=0.389 Sum_probs=52.7
Q ss_pred CCCCCccce--EEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLTHNN--DLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG~I~--~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
||++| .|+ +|+|++|+. ++++|||||+|+++++|++||+ +++++|.++.|+|..+.++
T Consensus 62 ~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 62 FFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp HTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECHH
T ss_pred HHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCHH
Confidence 58999 788 899999977 9999999999999999999998 4779999999999998754
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.15 E-value=5.2e-11 Score=104.98 Aligned_cols=62 Identities=15% Similarity=0.294 Sum_probs=58.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+.++ ++++++||||+|.++++|++||++||+.+|.+++|.|++|.++..
T Consensus 205 ~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 205 ALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 58999999999999985 899999999999999999999999999999999999999998765
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.14 E-value=3.3e-11 Score=97.67 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=53.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC---eEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD---RVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~G---r~I~V~~A~ 59 (255)
||++||+|++|+|+.++ +++++|||||+|.++++|++||++||+.+|.. ++|.|++|.
T Consensus 115 ~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 115 MFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 58999999999999995 68999999999999999999999999988874 999999984
No 181
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=92.69 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=49.5
Q ss_pred CCCCC-ccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCL-THNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekF-G~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++| |+|++| |+ |||||+|.+.++|++||++||+++|.+++|+|++|+.+..--
T Consensus 33 lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 33 LSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp HHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred HHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 68999 599998 33 999999999999999999999999999999999999876543
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.12 E-value=6.5e-11 Score=104.23 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=55.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++ +++++|||||+|.+.++|++||+.||+++|.++.|.|++++.+..
T Consensus 33 ~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 33 IFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred HHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 589999999999986 678999999999999999999999999999999999999976553
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.08 E-value=6.5e-11 Score=104.63 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=50.2
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCee------------CCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF------------GDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i------------~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+. +||||||+|.+.++|++||++||++.| .++.|.|++|+..+..
T Consensus 163 ~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 163 VFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp HHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred HHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 589999999999996 479999999999999999999999999 8999999999876543
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.07 E-value=9.1e-11 Score=95.07 Aligned_cols=63 Identities=16% Similarity=0.311 Sum_probs=56.5
Q ss_pred CCCCCccceEEEEeecCCCC--CCCcEEEEEeCCHHHHHHHHHHhcCCeeC---CeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSG--RPRGFGFITYADRRAMDDAIREMHGREFG---DRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg--~srGfaFVtF~~~e~a~~AI~~lnG~~i~---Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|++++.++ ++++||||+|.++++|++||+.||+..|. .+.|.|..+.++..
T Consensus 23 ~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 23 LFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp HHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC
T ss_pred HHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc
Confidence 58999999999999999887 89999999999999999999999998876 67888888876554
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=7.7e-11 Score=86.84 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=48.9
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 65 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~~ 65 (255)
||++||+|++|+|+++ +++||||+|+++++|++|+.. ...+.+++|.|++|.++....
T Consensus 25 ~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 25 FFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNSN 82 (88)
T ss_dssp HSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCCC
T ss_pred HHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCCC
Confidence 5999999999999876 789999999999999866442 346689999999999877654
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.06 E-value=1.7e-10 Score=101.72 Aligned_cols=64 Identities=16% Similarity=0.346 Sum_probs=60.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++||+|++|+|+.++.|++++|||||+|.++++|++||+.||+..|.+++|.|.++.++...
T Consensus 115 ~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 115 LVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 5889999999999999999999999999999999999999999999999999999999876543
No 187
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.06 E-value=1.5e-10 Score=86.28 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=43.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCe--eCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGRE--FGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~--i~Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|+|+++ +||||||+|+++++|++ |++.. +.+++|.|++|.++..
T Consensus 31 ~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 31 FFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp HHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC----
T ss_pred HHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCc
Confidence 5899999999999985 88999999999999884 44444 5699999999998764
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.04 E-value=1.2e-10 Score=93.90 Aligned_cols=60 Identities=28% Similarity=0.550 Sum_probs=54.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|++++.|++++|||||+|.++++|++||+. .+.|+++.|.|.++.++.
T Consensus 23 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 23 YFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp HHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHH
T ss_pred HHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchh
Confidence 589999999999999999999999999999999999999985 468999999999887543
No 189
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=87.19 Aligned_cols=52 Identities=12% Similarity=0.263 Sum_probs=48.3
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
+|++||+|+.|+|+.| .+||||.+.++|.+||+ ||+++|.+++|+|++++|.
T Consensus 35 ~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 35 QFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 3789999999999998 38999999999999998 9999999999999999864
No 190
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.02 E-value=2.7e-10 Score=96.78 Aligned_cols=58 Identities=3% Similarity=0.023 Sum_probs=52.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
||++||+|++|.|++++ +++++|||||+|+++++|++||+.++ .+|+++.|.|.+++.
T Consensus 129 ~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 129 WLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred HHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 58999999999999985 58899999999999999999998665 699999999998865
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.00 E-value=3.8e-10 Score=92.04 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=43.5
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 17 RDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 17 k~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
..++++++||||+|.+.++|++||++||+++|.+++|.|++|++++
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 5788999999999999999999999999999999999999999864
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.97 E-value=2.7e-10 Score=98.17 Aligned_cols=57 Identities=12% Similarity=0.270 Sum_probs=53.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|++++ ++||||+|.++++|++||+.||+.+|.++.|.|+++.++.
T Consensus 55 ~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 55 LFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp HHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred HHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 58899999999999984 7899999999999999999999999999999999998653
No 193
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.96 E-value=3e-10 Score=82.93 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=40.9
Q ss_pred cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 025249 7 HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 57 (255)
Q Consensus 7 ~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~ 57 (255)
+|++|+|+++ ++||||+|.++++|++|| +||+++|.+++|+|+.
T Consensus 43 ~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 43 PVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred cceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 8999999865 689999999999999999 8999999999999974
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.94 E-value=3.1e-10 Score=94.64 Aligned_cols=57 Identities=12% Similarity=0.270 Sum_probs=53.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
||++||+|++|+|+.++ ++||||+|.++++|++||+.||+.+|.++.|.|.++.++.
T Consensus 24 ~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 24 LFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp HHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred HHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 58999999999999984 7899999999999999999999999999999999998654
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.92 E-value=6.7e-10 Score=98.17 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCCCc-cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCCC
Q 025249 1 MQQCLT-HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 64 (255)
Q Consensus 1 lfekFG-~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~~ 64 (255)
||++|| +|+.|+|+.++. +++++||||+|.++++|++||+.||++.|.++.|.|.++.++...
T Consensus 137 ~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 137 LLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 588999 999999999865 789999999999999999999999999999999999999876644
No 196
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.92 E-value=1.2e-09 Score=93.70 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCCCccceEEEEeecCC----CCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 2 QQCLTHNNDLKIMLERD----SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 2 fekFG~I~~V~Iv~Dk~----Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
|++||+|++|.|+++.. |+.++||+||+|.+.++|++||+.||+..|+|++|.|+++.
T Consensus 150 ~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 150 CGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 68999999999996644 55899999999999999999999999999999999999975
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.89 E-value=1.1e-09 Score=96.07 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=54.7
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcC-CeeC---CeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHG-REFG---DRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG-~~i~---Gr~I~V~~A~~k~~ 63 (255)
||++||+|++|.|+.| .|++++|||||+|.+.++|++||+.||+ ..+. +++|.|+++.+...
T Consensus 116 ~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 116 AFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 5899999999999999 6899999999999999999999999954 4444 89999999987543
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.85 E-value=2.9e-10 Score=92.72 Aligned_cols=61 Identities=18% Similarity=0.366 Sum_probs=52.6
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
+|++|++|.. .++.+..+++++|||||+|.++++|++||+ ||+++|.+++|.|.++.++..
T Consensus 33 ~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 33 AISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp HHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSC
T ss_pred HHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccc
Confidence 3667888777 455666889999999999999999999995 999999999999999987654
No 199
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=2e-09 Score=82.15 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=46.3
Q ss_pred CCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 2 QQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 2 fekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
|++||+|+.|+|+.|+ +||||.+.++|.+||+ ||+++|.++.|+|++..+
T Consensus 45 F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 45 LGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCCC
T ss_pred HHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccCC
Confidence 7789999999999983 9999999999999998 999999999999997654
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.77 E-value=7.3e-09 Score=90.91 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=50.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEeccc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 60 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~ 60 (255)
||++||+|++|+|+++ ++||||+|.++++|++||+.||++.|.++.|.|.++.+
T Consensus 42 ~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 42 LFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp HTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 5899999999999764 68999999999999999999999999999999999875
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.74 E-value=9.4e-10 Score=91.08 Aligned_cols=43 Identities=12% Similarity=0.347 Sum_probs=38.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 20 GRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 20 g~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
+++++||||+|.++++|++|| +||+++|.+++|.|.++.+...
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP 90 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCC
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCC
Confidence 456899999999999999999 7999999999999999887543
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.71 E-value=7.5e-09 Score=95.85 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeC---Ce--EEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG---DR--VISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~---Gr--~I~V~~A~ 59 (255)
+|++||+|++|.|+. +|+||||+|++.++|++||++||+++|. ++ +|.|++++
T Consensus 40 ~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 40 VLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 589999999987754 5799999999999999999999999983 34 57777774
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.60 E-value=3.3e-08 Score=79.83 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=42.4
Q ss_pred cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCCC
Q 025249 7 HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 63 (255)
Q Consensus 7 ~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~~ 63 (255)
.|++|++.+ +++||||+|.++++|++|| +||+++|.+++|.|.++.+...
T Consensus 41 ~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 41 PVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP 90 (172)
T ss_dssp SEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCC
T ss_pred ceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCC
Confidence 566666554 5799999999999999999 7999999999999999876543
No 204
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.60 E-value=2e-08 Score=85.80 Aligned_cols=52 Identities=6% Similarity=0.129 Sum_probs=45.6
Q ss_pred CCCCCccc--eEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 025249 1 MQQCLTHN--NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVIS 54 (255)
Q Consensus 1 lfekFG~I--~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~ 54 (255)
||++||+| ++|+|+.++ +.+++||||+|+++++|++||++||+++|.+...+
T Consensus 143 ~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 143 ICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp HHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred HHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 58899999 899998875 45679999999999999999999999999886543
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=1.1e-06 Score=69.82 Aligned_cols=53 Identities=4% Similarity=0.085 Sum_probs=47.0
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCC-HHHHHHHHHHhc--CCeeCCeEEEEEecc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYAD-RRAMDDAIREMH--GREFGDRVISVNKAQ 59 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~-~e~a~~AI~~ln--G~~i~Gr~I~V~~A~ 59 (255)
+|++||+|..|.|+.+.. .|||.|.+ +++|++||++|| +.+|++..|+|++..
T Consensus 39 ~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 39 LFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred HHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 589999999999999865 59999999 899999999995 788999988888765
No 206
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.06 E-value=3.4e-06 Score=72.23 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEecccC
Q 025249 22 PRGFGFITYADRRAMDDAIREMHGREFG-DRVISVNKAQPK 61 (255)
Q Consensus 22 srGfaFVtF~~~e~a~~AI~~lnG~~i~-Gr~I~V~~A~~k 61 (255)
.++||||+|.+.++|++||++||+.+|. +++|+|++|+++
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 5799999999999999999999999999 999999999875
No 207
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.04 E-value=2.7e-06 Score=70.50 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=37.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEecccC
Q 025249 22 PRGFGFITYADRRAMDDAIREMHGREFG-DRVISVNKAQPK 61 (255)
Q Consensus 22 srGfaFVtF~~~e~a~~AI~~lnG~~i~-Gr~I~V~~A~~k 61 (255)
.++||||+|.++++|++||++||++.|. +++|.|++|+++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 5799999999999999999999999999 999999999875
No 208
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.95 E-value=7.9e-06 Score=71.46 Aligned_cols=38 Identities=11% Similarity=0.296 Sum_probs=36.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEecc
Q 025249 22 PRGFGFITYADRRAMDDAIREMHGREFG-DRVISVNKAQ 59 (255)
Q Consensus 22 srGfaFVtF~~~e~a~~AI~~lnG~~i~-Gr~I~V~~A~ 59 (255)
.++||||+|.+.++|++||+.||+++|. ++.|+|++|+
T Consensus 243 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3599999999999999999999999999 9999999986
No 209
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.40 E-value=0.00014 Score=58.29 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=31.8
Q ss_pred eEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCee
Q 025249 9 NDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF 48 (255)
Q Consensus 9 ~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i 48 (255)
+.++|+++.. +++|||||+|.++++|++||+++++...
T Consensus 1 ~~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 1 MQYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp CEEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CcEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 3678888865 5899999999999999999998876433
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0003 Score=54.95 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=41.3
Q ss_pred ccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 025249 6 THNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 57 (255)
Q Consensus 6 G~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~ 57 (255)
+.|++|.|+.|. +=|+|+|.+...|.+|.-+||+.+|.+++|.|.-
T Consensus 51 g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 51 KDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 889999999883 3699999999999999888999999999998864
No 211
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.93 E-value=0.00058 Score=54.41 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=40.9
Q ss_pred EEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEecccC
Q 025249 11 LKIMLERDSGRPRGFGFITYADRRAMDDAIREM-HGREFGDRVISVNKAQPK 61 (255)
Q Consensus 11 V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~l-nG~~i~Gr~I~V~~A~~k 61 (255)
..|.++ ..+.+|+++|+|.+.++|++||++| |+.+|++ .|.|+++.++
T Consensus 3 ~al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp EEEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred eEeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 345553 4578999999999999999999999 9999999 9999988753
No 212
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.01 E-value=0.0035 Score=36.16 Aligned_cols=20 Identities=45% Similarity=1.116 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSAV 112 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~~ 112 (255)
..||+|+..|||+++||...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 46999999999999999763
No 213
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.00 E-value=0.0056 Score=39.12 Aligned_cols=23 Identities=43% Similarity=1.067 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 025249 90 GGQDDCFKCGRPGHWARDCPSAV 112 (255)
Q Consensus 90 ~g~~~~~~~g~~Gh~~~~cp~~~ 112 (255)
.....||.|+..|||+++||...
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCCeeeECCCCCcchhhCcCCc
Confidence 34578999999999999999764
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.90 E-value=0.013 Score=46.17 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=40.5
Q ss_pred CCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCC-eEEEEEec
Q 025249 2 QQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD-RVISVNKA 58 (255)
Q Consensus 2 fekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~G-r~I~V~~A 58 (255)
|++||+|+++.... ..-+-.|+|.+..+|++||. .|++.|.+ -.|-|...
T Consensus 44 F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 44 FAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp HHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred HHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 78999999987621 12389999999999999998 69999985 66777664
No 215
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.63 E-value=0.011 Score=45.46 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=46.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
||.+|.++....+++. . -=..|.|.++++|.+|-.+||+..|.++.|+|-++++-
T Consensus 30 Lf~~~~~~~tF~~lkS-----F-RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 30 LFRTYDKDTTFQYFKS-----F-KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp HHHTTCSSCEEEEETT-----T-TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred HHHhhCcCcceeecCc-----c-eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4678888888777664 1 14589999999999999999999999999999999854
No 216
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=95.23 E-value=0.0068 Score=41.55 Aligned_cols=24 Identities=42% Similarity=1.020 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 025249 89 PGGQDDCFKCGRPGHWARDCPSAV 112 (255)
Q Consensus 89 ~~g~~~~~~~g~~Gh~~~~cp~~~ 112 (255)
......||.|+..|||+++||...
T Consensus 20 ~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 20 QLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCCCcceeCCCCCcccccCcCCc
Confidence 345678999999999999999864
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.54 E-value=0.018 Score=46.13 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCCCccceEE-EEeec--------CCCCC-----CCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 2 QQCLTHNNDL-KIMLE--------RDSGR-----PRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 2 fekFG~I~~V-~Iv~D--------k~Tg~-----srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
|++||+|++- .+..+ +.+.+ ...+-.|+|+++.+|++||. .|+++|.+..|-|....
T Consensus 27 Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 27 FQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 8899999883 22110 00111 13477999999999999998 79999999888887665
No 218
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=94.53 E-value=0.0017 Score=52.88 Aligned_cols=18 Identities=39% Similarity=1.082 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPS 110 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~ 110 (255)
..||+|+..||++++||.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCCTTTCCSSCCGGGCCS
T ss_pred CcccEeCCccchhhhCCC
Confidence 456777766777666665
No 219
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.20 E-value=0.025 Score=38.52 Aligned_cols=20 Identities=45% Similarity=1.446 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025249 92 QDDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 92 ~~~~~~~g~~Gh~~~~cp~~ 111 (255)
...||.|+..|||+++||..
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 45799999999999999954
No 220
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=93.10 E-value=0.032 Score=32.80 Aligned_cols=19 Identities=42% Similarity=1.076 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~ 111 (255)
..||+|+..||++++|+..
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4699999999999999865
No 221
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.99 E-value=0.33 Score=37.16 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=37.6
Q ss_pred ccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccCC
Q 025249 6 THNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 62 (255)
Q Consensus 6 G~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k~ 62 (255)
|+|+.|+... .-|+|+|.+.+.|++.|++ ..++|++..|.|....++.
T Consensus 38 G~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~~ 85 (104)
T 2dhx_A 38 GPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPRA 85 (104)
T ss_dssp CCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCCC
T ss_pred ceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCCC
Confidence 6777777644 3789999999999999874 3568999999997765544
No 222
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=88.96 E-value=0.3 Score=37.10 Aligned_cols=36 Identities=6% Similarity=0.155 Sum_probs=29.1
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH 44 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln 44 (255)
||+.||. +.|+.|.| --|||.|.+++.|..||+.|.
T Consensus 35 lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 35 LFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred HhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 6889984 45666776 289999999999999998764
No 223
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=87.90 E-value=0.34 Score=32.81 Aligned_cols=21 Identities=38% Similarity=0.904 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 025249 92 QDDCFKCGRPGHWARDCPSAV 112 (255)
Q Consensus 92 ~~~~~~~g~~Gh~~~~cp~~~ 112 (255)
...||+|+..|||+++||...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 357999999999999999764
No 224
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=87.44 E-value=0.32 Score=37.05 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 025249 1 MQQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH 44 (255)
Q Consensus 1 lfekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln 44 (255)
||+.|| -+.|+.|.| --|||.|.+++.|..||..|.
T Consensus 25 lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 25 LFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 689998 455667776 279999999999999998764
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=86.95 E-value=0.48 Score=33.21 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=31.0
Q ss_pred cceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 025249 7 HNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 59 (255)
Q Consensus 7 ~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~ 59 (255)
.|-.|+|..+ |.||+.... .++++++.|+...+.++.|.|+.++
T Consensus 32 ~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp GEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred hccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 3455666554 889988775 4667888899999999999998775
No 226
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=86.51 E-value=0.36 Score=29.91 Aligned_cols=18 Identities=33% Similarity=1.051 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPS 110 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~ 110 (255)
..||.|+..||++++||.
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 469999999999999984
No 227
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=85.58 E-value=0.33 Score=35.56 Aligned_cols=21 Identities=33% Similarity=0.912 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSAVG 113 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~~g 113 (255)
-.||+|+..||++++||....
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r~ 67 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKRS 67 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCCS
T ss_pred CeecccCCCCcCcccCCcccc
Confidence 359999999999999998753
No 228
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=85.37 E-value=0.32 Score=33.22 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSAVG 113 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~~g 113 (255)
..||.|+..||++++||....
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~~ 51 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKRDG 51 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCCC-
T ss_pred CeeCCCCCCCCCcCCCcCCCc
Confidence 469999999999999997754
No 229
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=85.30 E-value=0.44 Score=29.51 Aligned_cols=18 Identities=56% Similarity=1.331 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025249 94 DCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 94 ~~~~~g~~Gh~~~~cp~~ 111 (255)
.||+|+..||++++||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 489999999999999975
No 230
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=84.86 E-value=0.34 Score=29.68 Aligned_cols=18 Identities=50% Similarity=1.341 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPS 110 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~ 110 (255)
..||.|+..||++++||.
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 357888888888888763
No 231
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=83.73 E-value=0.5 Score=28.87 Aligned_cols=18 Identities=39% Similarity=1.322 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025249 94 DCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 94 ~~~~~g~~Gh~~~~cp~~ 111 (255)
.||+|+..||++++||..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 489999999999999864
No 232
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=82.89 E-value=0.24 Score=33.60 Aligned_cols=19 Identities=47% Similarity=1.328 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025249 94 DCFKCGRPGHWARDCPSAV 112 (255)
Q Consensus 94 ~~~~~g~~Gh~~~~cp~~~ 112 (255)
.||+|+..|||+++||...
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp -------------------
T ss_pred ccccCCCCCcCHhhCcCCC
Confidence 5999999999999999774
No 233
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=82.71 E-value=0.58 Score=31.89 Aligned_cols=21 Identities=38% Similarity=1.164 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 025249 92 QDDCFKCGRPGHWARDCPSAV 112 (255)
Q Consensus 92 ~~~~~~~g~~Gh~~~~cp~~~ 112 (255)
...||+|+..||++++||...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTT
T ss_pred CCcccccCCCCeehhhCcCCc
Confidence 356999999999999999874
No 234
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=82.64 E-value=0.61 Score=30.38 Aligned_cols=19 Identities=42% Similarity=1.076 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~ 111 (255)
..||+|+..||++.+||..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 4699999999999999975
No 235
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.83 E-value=1.4 Score=30.26 Aligned_cols=18 Identities=39% Similarity=1.082 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPS 110 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~ 110 (255)
..||+|+..||++++||.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 346677777777776664
No 236
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.68 E-value=0.82 Score=31.40 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025249 92 QDDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 92 ~~~~~~~g~~Gh~~~~cp~~ 111 (255)
...||.|+..||++++||..
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGG
T ss_pred CCccCCcCCcCCccCcCCCc
Confidence 35799999999999999975
No 237
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=80.36 E-value=0.67 Score=30.18 Aligned_cols=19 Identities=42% Similarity=1.193 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~ 111 (255)
..||.|+..||++++||..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 4699999999999999965
No 238
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=79.35 E-value=0.66 Score=30.76 Aligned_cols=19 Identities=42% Similarity=1.174 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~ 111 (255)
..||.|+..||++++||..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 3588888888888888754
No 239
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=78.93 E-value=0.71 Score=30.61 Aligned_cols=19 Identities=42% Similarity=1.179 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~ 111 (255)
..||+|+..||++.+||..
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSC
T ss_pred cceeeeCCCCcChhhcCCC
Confidence 4699999999999999875
No 240
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=77.06 E-value=1.4 Score=31.31 Aligned_cols=20 Identities=35% Similarity=0.963 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025249 92 QDDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 92 ~~~~~~~g~~Gh~~~~cp~~ 111 (255)
...||+|+..||++++|+..
T Consensus 24 ~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 24 GDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp TSCCTTTCCSSSCTTTCSSC
T ss_pred CCcccccCCcCcCcccCCCC
Confidence 34688999999998888854
No 241
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=75.19 E-value=1.2 Score=31.80 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025249 92 QDDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 92 ~~~~~~~g~~Gh~~~~cp~~ 111 (255)
...||.|+..||++++||..
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTTG
T ss_pred CCccCCcCCcCCccCcCcCC
Confidence 35799999999999999965
No 242
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=74.53 E-value=1.1 Score=42.72 Aligned_cols=35 Identities=3% Similarity=0.034 Sum_probs=26.1
Q ss_pred CCCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHH
Q 025249 2 QQCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIR 41 (255)
Q Consensus 2 fekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~ 41 (255)
|++||+|.+|.+-+++ .-||.|||.++++++++++
T Consensus 73 ~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 73 LSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred HHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 6899999998877652 2599999999999997765
No 243
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=73.79 E-value=1.3 Score=35.71 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 025249 92 QDDCFKCGRPGHWARDCPSAV 112 (255)
Q Consensus 92 ~~~~~~~g~~Gh~~~~cp~~~ 112 (255)
...||.|+..||++++||...
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccccCCcCCEeccCcCCC
Confidence 467999999999999999763
No 244
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=71.55 E-value=2.5 Score=32.49 Aligned_cols=20 Identities=35% Similarity=0.968 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 025249 91 GQDDCFKCGRPGHWARDCPS 110 (255)
Q Consensus 91 g~~~~~~~g~~Gh~~~~cp~ 110 (255)
....||+|+..|||+++||.
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 35679999999999999996
No 245
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=61.48 E-value=6.3 Score=28.99 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.2
Q ss_pred cceEEEEeecCCCCCCCcEEEEEeCC
Q 025249 7 HNNDLKIMLERDSGRPRGFGFITYAD 32 (255)
Q Consensus 7 ~I~~V~Iv~Dk~Tg~srGfaFVtF~~ 32 (255)
+|++|+|..-...++.|+||-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887766678999999999987
No 246
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=55.63 E-value=15 Score=26.95 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=28.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCeeCCe-----EEEEEecc
Q 025249 24 GFGFITYADRRAMDDAIREMHGREFGDR-----VISVNKAQ 59 (255)
Q Consensus 24 GfaFVtF~~~e~a~~AI~~lnG~~i~Gr-----~I~V~~A~ 59 (255)
.-|+|.|.+.+++..-++.++++.+-+. +..|++|-
T Consensus 46 SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 46 ARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp EEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred eEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 5789999999999999999999887532 23466664
No 247
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=55.45 E-value=3.7 Score=29.82 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~ 111 (255)
-.||.|+..||++++||.-
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4699999999999999975
No 248
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=53.39 E-value=11 Score=28.45 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCCCCCcEEEEEeCC
Q 025249 7 HNNDLKIMLERDSGRPRGFGFITYAD 32 (255)
Q Consensus 7 ~I~~V~Iv~Dk~Tg~srGfaFVtF~~ 32 (255)
+|++|+|..-...++.|+||-|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887765668999999999987
No 249
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=52.42 E-value=12 Score=28.55 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.7
Q ss_pred cceEEEEeecCCCCCCCcEEEEEeCC
Q 025249 7 HNNDLKIMLERDSGRPRGFGFITYAD 32 (255)
Q Consensus 7 ~I~~V~Iv~Dk~Tg~srGfaFVtF~~ 32 (255)
+|++|+|..-...++.|+||-|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788887766678999999999987
No 250
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=51.89 E-value=6.6 Score=30.02 Aligned_cols=19 Identities=37% Similarity=1.025 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 025249 93 DDCFKCGRPGHWARDCPSA 111 (255)
Q Consensus 93 ~~~~~~g~~Gh~~~~cp~~ 111 (255)
..||+|+..|||+++||..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~ 23 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHI 23 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSC
T ss_pred CcccCCCCCCcCcccCcCC
Confidence 4589999999999999874
No 251
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=49.10 E-value=1.2 Score=41.88 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=19.4
Q ss_pred CCCCCccceEEEEee----cC-CCCCCCcEE--EEEeCCHH
Q 025249 1 MQQCLTHNNDLKIML----ER-DSGRPRGFG--FITYADRR 34 (255)
Q Consensus 1 lfekFG~I~~V~Iv~----Dk-~Tg~srGfa--FVtF~~~e 34 (255)
||.++++|..|..+. ++ .+....+++ ||+|++++
T Consensus 12 lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~ 52 (437)
T 3pgw_S 12 LFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPR 52 (437)
T ss_pred hcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcc
Confidence 788999998874332 22 222223344 77776643
No 252
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=48.29 E-value=21 Score=26.64 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=27.8
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCeeCCe-----EEEEEecc
Q 025249 24 GFGFITYADRRAMDDAIREMHGREFGDR-----VISVNKAQ 59 (255)
Q Consensus 24 GfaFVtF~~~e~a~~AI~~lnG~~i~Gr-----~I~V~~A~ 59 (255)
.-|+|.|.+.+++..-.+.+++..+-+. +..|++|-
T Consensus 54 SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 54 SRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 3689999999999999999998877532 34466663
No 253
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=42.51 E-value=9.7 Score=28.80 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=32.7
Q ss_pred CCCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 3 QCLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 3 ekFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
+.||.-+.+..+.+ -..|...+.+++++||+.|+-. ..-+.|+|-+..++
T Consensus 39 ~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 39 IAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp HHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred HHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 45677666666532 3579999999999999987743 33344555444444
No 254
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=39.78 E-value=27 Score=25.29 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=25.3
Q ss_pred ceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcC
Q 025249 8 NNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHG 45 (255)
Q Consensus 8 I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG 45 (255)
|.+|.|+.. .+||-||+++..+++..+|+.+.+
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 455555542 789999999999998888876654
No 255
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=36.65 E-value=31 Score=25.95 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=26.1
Q ss_pred ceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCC
Q 025249 8 NNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR 46 (255)
Q Consensus 8 I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~ 46 (255)
|.+|.++.. .|||-|||=.++.++.+||+.+...
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 555544432 6899999999999999999877543
No 256
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.67 E-value=14 Score=25.77 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=9.0
Q ss_pred CcEEEEEeCCH
Q 025249 23 RGFGFITYADR 33 (255)
Q Consensus 23 rGfaFVtF~~~ 33 (255)
+..|||.|++.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 45899999984
No 257
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=31.18 E-value=45 Score=25.73 Aligned_cols=36 Identities=0% Similarity=-0.103 Sum_probs=20.6
Q ss_pred CccceEEEEeecCCCCCCCcEEEEE-eCCHHHHHHHHHHhc
Q 025249 5 LTHNNDLKIMLERDSGRPRGFGFIT-YADRRAMDDAIREMH 44 (255)
Q Consensus 5 FG~I~~V~Iv~Dk~Tg~srGfaFVt-F~~~e~a~~AI~~ln 44 (255)
+=+|++|+|-.|. +-.-.||+ |.+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHHH
Confidence 4478888887773 33455666 555554444444443
No 258
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=27.71 E-value=21 Score=25.66 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=8.9
Q ss_pred CcEEEEEeCCH
Q 025249 23 RGFGFITYADR 33 (255)
Q Consensus 23 rGfaFVtF~~~ 33 (255)
+..|||.|++.
T Consensus 54 ~e~ClV~F~D~ 64 (79)
T 2m0o_A 54 REVCLVQFEDD 64 (79)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 45899999984
No 259
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=26.37 E-value=14 Score=28.26 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 025249 25 FGFITYADRRAMDDAIREMHGREFGDR 51 (255)
Q Consensus 25 faFVtF~~~e~a~~AI~~lnG~~i~Gr 51 (255)
++|++|+++..+..||+.|++....++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ---------------------------
T ss_pred cccccccCCCchhhhhhhccCCCCCCC
Confidence 678888888888889998887665543
No 260
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.32 E-value=13 Score=25.58 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.6
Q ss_pred CCcEEEEEeCCH
Q 025249 22 PRGFGFITYADR 33 (255)
Q Consensus 22 srGfaFVtF~~~ 33 (255)
.+..|||.|++.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 456899999984
No 261
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=23.61 E-value=75 Score=23.43 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecccC
Q 025249 4 CLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 61 (255)
Q Consensus 4 kFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~A~~k 61 (255)
.||.-.++..+.+ --.|-..+.+++++||+.|+- ...-+.|+|-...+.
T Consensus 36 afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr-s~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 36 VFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR-SSSMKSLRILLLSQD 84 (94)
T ss_dssp HHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHH-STTTTEEEEEEEECS
T ss_pred HhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhcc-CccccceEEEEEcCC
Confidence 4677777766643 246889999999999997663 233445555544443
No 262
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=23.46 E-value=54 Score=27.52 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhcCC
Q 025249 22 PRGFGFITYADRRAMDDAIREMHGR 46 (255)
Q Consensus 22 srGfaFVtF~~~e~a~~AI~~lnG~ 46 (255)
.|||-|||=.++.++++||+.|...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 7899999999999999999988754
No 263
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.86 E-value=75 Score=31.00 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=29.5
Q ss_pred CCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 025249 4 CLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH 44 (255)
Q Consensus 4 kFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln 44 (255)
.+|-|++|.|-.-+.. +.+-+++|.|.+.+++.+||.++-
T Consensus 370 TLGIITeatLrL~P~P-~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 370 TLGVITEATIKIRPTP-EYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp SSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cCcceeeeeeeeccCC-ccccccccccCCchhhhhhHHHHH
Confidence 6789999877654332 234578899999999998887653
No 264
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=22.38 E-value=74 Score=23.58 Aligned_cols=36 Identities=0% Similarity=0.158 Sum_probs=20.7
Q ss_pred CccceEEEEeecCCCCCCCcEEEEEeC-CHHHHHHHHHHhc
Q 025249 5 LTHNNDLKIMLERDSGRPRGFGFITYA-DRRAMDDAIREMH 44 (255)
Q Consensus 5 FG~I~~V~Iv~Dk~Tg~srGfaFVtF~-~~e~a~~AI~~ln 44 (255)
+=+|++|+|-.|. +-.-.||++. +.++.+++++.|+
T Consensus 35 ~vtVt~V~vs~Dl----~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 35 FVTFSRVELSKDK----RYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp GCCEEEEEECTTS----CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCC----CEEEEEEEeCCChhhHHHHHHHHH
Confidence 4578888887773 2234456555 3555555555554
No 265
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=22.14 E-value=82 Score=23.44 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=21.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 025249 26 GFITYADRRAMDDAIREMHGREFGDRVISV 55 (255)
Q Consensus 26 aFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V 55 (255)
-||++.+.++++-|++.+. +..-+.|+|
T Consensus 68 D~Vtl~sddDl~~A~e~~~--e~~~~~l~I 95 (98)
T 1q1o_A 68 DFVVLGSDEDWNVAKEMLA--ENNEKFLNI 95 (98)
T ss_dssp CEEEECSHHHHHHHHHHHH--HTTCCEEEE
T ss_pred CEEEEcCHHHHHHHHHHHH--hhhcCeEEE
Confidence 5999999999999998764 333455655
No 266
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=21.65 E-value=1.2e+02 Score=22.49 Aligned_cols=18 Identities=6% Similarity=0.307 Sum_probs=16.1
Q ss_pred EEEeCCHHHHHHHHHHhc
Q 025249 27 FITYADRRAMDDAIREMH 44 (255)
Q Consensus 27 FVtF~~~e~a~~AI~~ln 44 (255)
.|+|.+.+++..|+..+.
T Consensus 74 lItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 74 LVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp EEEECSHHHHHHHHHHCC
T ss_pred EEEecCHHHHHHHHHhcC
Confidence 599999999999998765
No 267
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.16 E-value=82 Score=24.55 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=25.6
Q ss_pred ceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcC
Q 025249 8 NNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHG 45 (255)
Q Consensus 8 I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG 45 (255)
|.+|.++.. .+||-||++...+++..+|..+.+
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~g 65 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRH 65 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCC
Confidence 556666542 689999999999988888887665
No 268
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.06 E-value=1.4e+02 Score=22.29 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhc
Q 025249 4 CLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMH 44 (255)
Q Consensus 4 kFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~ln 44 (255)
.||.-.++..+.+ --.|-..+.+++++||+.|+
T Consensus 52 afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 52 AFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp HHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHH
T ss_pred HhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhc
Confidence 4677777766644 25688999999999999766
No 269
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=20.22 E-value=1e+02 Score=23.29 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=29.1
Q ss_pred CCccceEEEEeecCCCCCCCcEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 025249 4 CLTHNNDLKIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 57 (255)
Q Consensus 4 kFG~I~~V~Iv~Dk~Tg~srGfaFVtF~~~e~a~~AI~~lnG~~i~Gr~I~V~~ 57 (255)
.||.-.++..+.+ --.|-..+.+++++||+.|+- ...-+.|+|-+
T Consensus 63 afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr-s~~mkSLRIlL 107 (111)
T 2c60_A 63 VFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR-SSSMKSLRILL 107 (111)
T ss_dssp HHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH-CSSCCSEEEEE
T ss_pred HhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc-CccccceEEEE
Confidence 4677677666643 246888999999999997663 22334444433
Done!