BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025253
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1
SV=1
Length = 226
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 63 TPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHN 122
TPEEQ I+ +L AK+ NR++KIAK L +T D ++ W T+ + ++ +
Sbjct: 79 TPEEQLIIMELHAKWG-----NRWSKIAKHLPGRT--DNEIKNFWRTRIQKYIKQSDVTT 131
Query: 123 SARKNKDRKEKATDSSAKSSSH 144
++ + D +A +SSH
Sbjct: 132 TSSVGSHHSSEINDQAASTSSH 153
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 62 WTPEEQSILEDLLAKYASDSAVN-RYAKIAKQLKDKTVRDVALR 104
WT EEQ LE LL KY + + R+ KIA +L ++T + VA R
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASR 698
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 62 WTPEEQSILEDLLAKYASDSAVN-RYAKIAKQLKDKTVRDVALR 104
WT EEQ LE LL KY + + R+ KIA +L ++T + VA R
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASR 705
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR--------WMTK 110
S +WT EE+ + E LAK+ R+ KIA LK +TV V R W +
Sbjct: 115 SVKWTVEEKELFEQGLAKFG-----RRWTKIATLLKSRTVLQVKSYARQYFKNKVKWDVE 169
Query: 111 KENGKRRKEDHNSARKNKDRKEKA 134
KE +K + KNKD + KA
Sbjct: 170 KET-PTQKSSSDLQVKNKDDRTKA 192
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 47 QTASALRHN----SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102
+TA + H+ + S +WT EE+ + E LAK+ R+ KI+K + +TV V
Sbjct: 102 KTAKIMVHSPTKPASYSVKWTIEEKELFEQGLAKFG-----RRWTKISKLIGSRTVLQVK 156
Query: 103 LRCRWMTK-------KENGKRRKEDHNSARKNKDRKEKATDSSA 139
R K + +K HN KN+D+ KA S
Sbjct: 157 SYARQYFKNKVKCGLDKETPNQKTGHNLQVKNEDKGTKAWTPSC 200
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK---KENGK 115
S +WT EE+ + E L KY R+ KIAK + +TV V R K K +G
Sbjct: 119 SLKWTSEEKELFEQGLVKYG-----RRWTKIAKLIGSRTVLQVKSYARQYFKNKAKNDGS 173
Query: 116 RRKE 119
R+E
Sbjct: 174 EREE 177
>sp|Q5ZU04|QUEA_LEGPH S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 / ATCC 33152 / DSM 7513) GN=queA PE=3
SV=2
Length = 337
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 17/78 (21%)
Query: 175 ITGDI-----------LEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDM 223
ITGD L+ N ++ Q +D++ LCKA ENIL ++NDL +
Sbjct: 85 ITGDFTFLAHIKASKSLKSNDLIYLDAGKRLEVLQRQDDL-FLCKACENILDLLNDLGHI 143
Query: 224 PEIMKQMPPLPVKVNDDL 241
P +PP + ++ L
Sbjct: 144 P-----LPPYIAREDESL 156
>sp|Q5WV37|QUEA_LEGPL S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Legionella pneumophila (strain Lens) GN=queA PE=3
SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 175 ITGDI-----------LEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDM 223
ITGD L+ N ++ Q +D++ LCKA ENIL ++NDL +
Sbjct: 85 ITGDFTFLAHIKASKSLKSNDLIYLDAGKRLEVLQRQDDL-FLCKASENILDLLNDLGHI 143
Query: 224 PEIMKQMPP 232
P +PP
Sbjct: 144 P-----LPP 147
>sp|Q5X3P9|QUEA_LEGPA S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Legionella pneumophila (strain Paris) GN=queA PE=3
SV=1
Length = 337
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 205 LLCKARENILSIMNDLNDMPEIMKQMPPLPVKVNDDL 241
LCKA ENIL ++NDL +P +PP + ++ L
Sbjct: 125 FLCKASENILDLLNDLGHIP-----LPPYIAREDESL 156
>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1
Length = 205
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 63 TPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110
TPEEQ ++ +L AK+ NR++KIAK L +T D ++ W T+
Sbjct: 72 TPEEQLLIMELHAKWG-----NRWSKIAKTLPGRT--DNEIKNYWRTR 112
>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1
Length = 640
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKE 119
T WT EE I+ A NR+A+IAK L +T D A++ W + +R+ E
Sbjct: 145 TSWTEEEDRIIYQ-----AHKRLGNRWAEIAKLLPGRT--DNAIKNHWNS---TMRRKVE 194
Query: 120 DHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPP 157
+++ + A +S + +SHL G ++APP
Sbjct: 195 QEGYLQESSKASQPAVTTSFQKNSHLM----GFTHAPP 228
>sp|O52200|PRIM_MYCS2 DNA primase OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=dnaG PE=3 SV=1
Length = 636
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 63 TPEEQSILEDLLAKYASDSAVNRYAKIAK------QLKDKTVRDVALR--CRWM----TK 110
TP + ++ LA++ DSA R A + + ++KD T+RD R W+
Sbjct: 377 TPLFEFVIRSALAEHDLDSAEGRVAALRRCVPMLARIKDPTLRDEYARQLAGWVGWDNVA 436
Query: 111 KENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYR 170
+ G+ R+E RK+ +R+ + T + K P P+ P + G+ Y
Sbjct: 437 QVIGRVREEAKGGGRKDNNRRGQETAARPKPPPVQRPDPTDPTLWPQREALKA--GLQYP 494
Query: 171 AIGGITGDIL 180
A+ G D L
Sbjct: 495 ALAGPVFDTL 504
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1
SV=2
Length = 621
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104
ST WT EEQ +LE L Y ++ R+ KIA+ + +T +D R
Sbjct: 551 STPWTTEEQKLLEQALKTYPVNTP-ERWEKIAEAVPGRTKKDCMRR 595
>sp|Q54PP6|MYBY_DICDI Myb-like protein Y OS=Dictyostelium discoideum GN=mybY PE=4 SV=1
Length = 572
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 62 WTPEEQSILEDLLAKY--ASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108
WT E+Q LED L KY + S+V+R+ ++K+L + + VALR M
Sbjct: 312 WTVEDQKKLEDALTKYPPSRFSSVSRWQMVSKEL-GISPKAVALRYNQM 359
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDV 101
+T WT E E+ LA + ++ NR+ ++A+++ KTV DV
Sbjct: 23 TTRWTAAENKAFENALAVFDENTP-NRWERVAERVPGKTVGDV 64
>sp|Q2R9D2|Y1176_ORYSJ B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp.
japonica GN=Os11g0197600 PE=2 SV=1
Length = 406
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 33 SNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVN 84
S+ GG A I T + A AL+ N+GI+ + T + ++ED + + S N
Sbjct: 145 SDEGGMVTAAITTEKMAPALKENNGITGKRTRDVDYLMEDRVVVFKKSSEAN 196
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 131 KEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQI 190
KEK D +K + ++A P+ S PP +P +DDG I + + Q ++ ++I
Sbjct: 451 KEKIHDLESKITKLVSATPSLQSILPPDLP--SDDGALQEEIAKLQEKMTIQQKEVESRI 508
Query: 191 SANFGTFQ-IRDNIDLLCKARENILSIMNDL 220
+ Q +R+N+ L E I ++ ++L
Sbjct: 509 AEQLEEEQRLRENVKYL---NEQIATLQSEL 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.124 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,519,387
Number of Sequences: 539616
Number of extensions: 3776556
Number of successful extensions: 30514
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 27279
Number of HSP's gapped (non-prelim): 3197
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)