Query 025253
Match_columns 255
No_of_seqs 112 out of 133
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12579 DUF3755: Protein of u 99.7 1.3E-17 2.8E-22 111.0 3.1 35 195-229 1-35 (35)
2 PF00249 Myb_DNA-binding: Myb- 98.5 2.9E-07 6.3E-12 63.3 5.9 45 60-108 2-47 (48)
3 smart00717 SANT SANT SWI3, AD 98.3 1.4E-06 3.1E-11 57.0 5.8 46 60-109 2-47 (49)
4 cd00167 SANT 'SWI3, ADA2, N-Co 98.2 3.6E-06 7.7E-11 54.5 5.5 43 61-107 1-43 (45)
5 PF13921 Myb_DNA-bind_6: Myb-l 97.8 6.3E-05 1.4E-09 53.3 5.9 41 62-107 1-41 (60)
6 TIGR01557 myb_SHAQKYF myb-like 96.2 0.017 3.7E-07 42.0 6.0 49 59-111 3-56 (57)
7 PLN03212 Transcription repress 96.2 0.025 5.3E-07 52.4 8.2 43 60-109 79-121 (249)
8 PLN03091 hypothetical protein; 95.9 0.011 2.4E-07 58.6 4.8 47 60-111 68-114 (459)
9 PLN03212 Transcription repress 95.2 0.03 6.6E-07 51.8 5.1 49 59-111 25-74 (249)
10 PLN03091 hypothetical protein; 95.1 0.029 6.3E-07 55.7 4.8 49 60-112 15-64 (459)
11 COG5259 RSC8 RSC chromatin rem 94.6 0.051 1.1E-06 54.5 5.1 55 60-120 280-334 (531)
12 KOG0048 Transcription factor, 93.4 0.12 2.5E-06 46.6 4.6 53 59-117 9-63 (238)
13 KOG4167 Predicted DNA-binding 93.2 0.11 2.3E-06 54.7 4.6 41 58-103 618-658 (907)
14 KOG0048 Transcription factor, 92.5 0.18 3.9E-06 45.4 4.5 41 59-105 62-102 (238)
15 KOG1279 Chromatin remodeling f 89.2 0.78 1.7E-05 46.5 5.9 54 56-114 250-303 (506)
16 KOG0724 Zuotin and related mol 87.0 0.7 1.5E-05 43.0 3.7 51 60-110 32-86 (335)
17 PF05030 SSXT: SSXT protein (N 80.6 3.3 7.1E-05 31.4 4.3 42 175-216 10-51 (65)
18 KOG0457 Histone acetyltransfer 80.5 3.7 8.1E-05 41.0 5.8 48 58-109 71-118 (438)
19 PF07011 DUF1313: Protein of u 77.1 5.8 0.00013 31.7 4.9 50 175-225 17-70 (87)
20 KOG3841 TEF-1 and related tran 73.7 6.5 0.00014 39.1 5.3 51 60-111 77-144 (455)
21 KOG3554 Histone deacetylase co 73.1 3 6.5E-05 42.6 2.9 42 60-105 286-327 (693)
22 PF00046 Homeobox: Homeobox do 73.0 9 0.00019 26.3 4.6 48 59-111 4-51 (57)
23 PF13837 Myb_DNA-bind_4: Myb/S 72.1 8.9 0.00019 28.4 4.7 52 60-111 2-66 (90)
24 KOG0049 Transcription factor, 65.9 6 0.00013 41.9 3.4 39 60-102 413-451 (939)
25 KOG4329 DNA-binding protein [G 64.0 11 0.00023 37.6 4.5 45 59-107 277-322 (445)
26 KOG0050 mRNA splicing protein 63.9 7.1 0.00015 40.2 3.4 43 60-106 8-50 (617)
27 KOG1194 Predicted DNA-binding 62.4 17 0.00036 37.1 5.6 44 56-104 184-227 (534)
28 cd01021 GEWL Goose Egg White L 60.5 10 0.00022 33.2 3.4 45 60-110 115-165 (166)
29 smart00426 TEA TEA domain. 59.3 16 0.00034 28.1 3.8 22 60-81 4-25 (68)
30 PF12579 DUF3755: Protein of u 56.8 8.6 0.00019 25.8 1.8 17 180-196 5-21 (35)
31 PF11626 Rap1_C: TRF2-interact 54.2 8 0.00017 29.8 1.6 41 59-110 47-87 (87)
32 PLN03142 Probable chromatin-re 53.1 17 0.00038 40.0 4.4 39 60-102 825-863 (1033)
33 PRK13923 putative spore coat p 52.3 22 0.00048 31.5 4.2 44 61-105 7-52 (170)
34 cd00086 homeodomain Homeodomai 51.8 67 0.0015 21.5 5.8 48 59-111 4-51 (59)
35 smart00389 HOX Homeodomain. DN 48.2 56 0.0012 21.9 4.9 47 60-111 5-51 (56)
36 KOG0049 Transcription factor, 46.9 33 0.00072 36.6 5.1 48 55-106 355-403 (939)
37 TIGR02894 DNA_bind_RsfA transc 45.0 29 0.00063 30.6 3.7 50 61-111 6-57 (161)
38 PF01285 TEA: TEA/ATTS domain 44.6 24 0.00053 35.2 3.6 50 58-108 48-112 (431)
39 PF11035 SnAPC_2_like: Small n 44.0 41 0.00088 32.9 4.8 52 59-111 21-72 (344)
40 PLN03162 golden-2 like transcr 41.4 2.2E+02 0.0047 28.9 9.4 55 57-111 235-289 (526)
41 PF04504 DUF573: Protein of un 41.0 58 0.0013 25.9 4.6 52 60-111 5-64 (98)
42 PF13404 HTH_AsnC-type: AsnC-t 37.6 43 0.00094 22.6 3.0 24 84-108 18-41 (42)
43 PF07750 GcrA: GcrA cell cycle 33.4 56 0.0012 28.3 3.7 44 60-109 1-44 (162)
44 PF12776 Myb_DNA-bind_3: Myb/S 32.5 97 0.0021 23.1 4.5 50 61-110 1-63 (96)
45 KOG0051 RNA polymerase I termi 31.0 39 0.00084 35.4 2.7 49 58-112 383-431 (607)
46 smart00595 MADF subfamily of S 30.3 61 0.0013 24.0 3.0 25 85-110 29-53 (89)
47 TIGR00601 rad23 UV excision re 28.7 1E+02 0.0023 30.2 5.1 45 175-223 259-303 (378)
48 PF11229 DUF3028: Protein of u 27.4 78 0.0017 33.0 4.1 61 52-114 305-368 (589)
49 COG5114 Histone acetyltransfer 27.3 95 0.0021 30.7 4.4 48 59-110 63-110 (432)
50 PF00831 Ribosomal_L29: Riboso 26.8 2.4E+02 0.0053 20.2 5.6 43 178-221 14-56 (58)
51 KOG2857 Predicted MYND Zn-fing 26.6 1.2E+02 0.0027 26.5 4.6 49 173-225 96-144 (157)
52 PF06875 PRF: Plethodontid rec 26.3 3.2E+02 0.007 25.2 7.4 52 176-230 97-157 (214)
53 PF00763 THF_DHG_CYH: Tetrahyd 26.2 38 0.00082 27.4 1.4 56 185-246 52-110 (117)
54 PRK14176 bifunctional 5,10-met 25.6 48 0.001 31.4 2.1 64 179-248 55-122 (287)
55 PF10415 FumaraseC_C: Fumarase 24.7 29 0.00064 24.9 0.4 28 85-112 13-42 (55)
56 cd06929 NR_LBD_F1 Ligand-bindi 24.7 1.4E+02 0.003 24.6 4.5 42 63-106 127-171 (174)
57 PF15583 Imm41: Immunity prote 24.2 1E+02 0.0023 27.1 3.7 50 58-110 107-156 (158)
58 PF09111 SLIDE: SLIDE; InterP 21.6 3.2E+02 0.007 22.6 6.0 51 58-109 48-110 (118)
59 PRK14172 bifunctional 5,10-met 20.8 73 0.0016 30.1 2.3 60 183-248 53-116 (278)
60 cd04753 Commd5_HCaRG COMM_Doma 20.3 82 0.0018 25.8 2.2 25 199-223 76-100 (110)
No 1
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=99.69 E-value=1.3e-17 Score=110.97 Aligned_cols=35 Identities=63% Similarity=1.149 Sum_probs=33.9
Q ss_pred hhcccccchHHHHHHHHHHHHHHHHhccchhhhhc
Q 025253 195 GTFQIRDNIDLLCKARENILSIMNDLNDMPEIMKQ 229 (255)
Q Consensus 195 ~t~q~qeNidLf~~~RdNI~~ILn~m~~mpgiM~q 229 (255)
++||++||||||||+||||.+||++|++|||||+|
T Consensus 1 st~q~~eNidLf~~~R~NI~~il~~m~~mpgim~q 35 (35)
T PF12579_consen 1 STFQLQENIDLFCQTRDNILAILNDMNDMPGIMSQ 35 (35)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHcchhhhcC
Confidence 58999999999999999999999999999999997
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.51 E-value=2.9e-07 Score=63.26 Aligned_cols=45 Identities=31% Similarity=0.541 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHHHHHHhh
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWM 108 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVAlR~rwm 108 (255)
..||.||..+|.+++.+|+.. +|.+||..+| +||..+|-.|++-+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~----~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD----NWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT----HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc----HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 479999999999999999987 8999999999 99999999998754
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.34 E-value=1.4e-06 Score=57.01 Aligned_cols=46 Identities=37% Similarity=0.596 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~ 109 (255)
..||.+|..+|..++..|.. .+|.+||..+|+||..||..|++-+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~----~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK----NNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 47999999999999999986 47999999999999999999987654
No 4
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.22 E-value=3.6e-06 Score=54.46 Aligned_cols=43 Identities=37% Similarity=0.598 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHh
Q 025253 61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107 (255)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rw 107 (255)
.||.||...|..++.+|+. .+|.+||..+|+||..||..|+.-
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~----~~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK----NNWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc----CCHHHHHhHcCCCCHHHHHHHHHH
Confidence 5999999999999999985 579999999999999999888754
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.80 E-value=6.3e-05 Score=53.27 Aligned_cols=41 Identities=37% Similarity=0.631 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHh
Q 025253 62 WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107 (255)
Q Consensus 62 WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rw 107 (255)
||.||..+|.++...|.. .|.+||..||+||..+|-.|++.
T Consensus 1 WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-----DWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS------HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-----CHHHHHHHHCcCCHHHHHHHHHH
Confidence 999999999999999964 69999999988999999999999
No 6
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.20 E-value=0.017 Score=42.05 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHH---HHHHHHcC-CC-CHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRY---AKIAKQLK-DK-TVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry---~KIA~~Lp-~K-TvrDVAlR~rwm~~k 111 (255)
...||.||...|.+|+..|.... | .+|+..+. .+ |..+|+.+.+.+.-|
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~----~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPD----WATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCc----ccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 46799999999999999998632 5 77877653 55 999999999987654
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.16 E-value=0.025 Score=52.43 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~ 109 (255)
..||.||..+|.+.-..|. .||.+||..||++|- ++.|=||..
T Consensus 79 gpWT~EED~lLlel~~~~G-----nKWs~IAk~LpGRTD--nqIKNRWns 121 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLG-----NRWSLIAGRIPGRTD--NEIKNYWNT 121 (249)
T ss_pred CCCChHHHHHHHHHHHhcc-----ccHHHHHhhcCCCCH--HHHHHHHHH
Confidence 5799999999988877765 489999999999995 555666654
No 8
>PLN03091 hypothetical protein; Provisional
Probab=95.86 E-value=0.011 Score=58.59 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..||.||..+|-+.-.+|. .||.+||..||++|--+|--|+..+.+|
T Consensus 68 gpWT~EED~lLLeL~k~~G-----nKWskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 68 GTFSQQEENLIIELHAVLG-----NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCHHHHHHHHHHHHHhC-----cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999886 3999999999999977776666555555
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.24 E-value=0.03 Score=51.85 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc-CCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-KDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L-p~KTvrDVAlR~rwm~~k 111 (255)
...||.||..+|-++..+|.. .+|.+||..+ +++|.++|-.|+.-+..-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~----~nW~~IAk~~g~gRT~KQCReRW~N~L~P 74 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGE----GRWRSLPKRAGLLRCGKSCRLRWMNYLRP 74 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCc----ccHHHHHHhhhcCCCcchHHHHHHHhhch
Confidence 357999999999999999964 4799999988 699999997776544433
No 10
>PLN03091 hypothetical protein; Provisional
Probab=95.09 E-value=0.029 Score=55.73 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHHHHHHhhcccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVAlR~rwm~~kE 112 (255)
..||.||.++|.+++.+|.. ..|.+||..++ +||.++|-.|+.-+....
T Consensus 15 g~WTpEEDe~L~~~V~kyG~----~nWs~IAk~~g~gRT~KQCRERW~NyLdP~ 64 (459)
T PLN03091 15 GLWSPEEDEKLLRHITKYGH----GCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64 (459)
T ss_pred CCCCHHHHHHHHHHHHHhCc----CCHHHHhhhhccCcCcchHhHHHHhccCCc
Confidence 47999999999999999975 37999999875 999999977755444433
No 11
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=94.62 E-value=0.051 Score=54.46 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccccccccccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKED 120 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kEn~KRRKed 120 (255)
-.||.+|.-.|-+|...|.++ |.|||..+++||+.||++|.-.+---++. ++|-|
T Consensus 280 k~WS~qE~~LLLEGIe~ygDd-----W~kVA~HVgtKt~EqCIl~FL~LPieD~~-l~k~~ 334 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDD-----WDKVARHVGTKTKEQCILHFLQLPIEDNY-LSKGD 334 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhh-----HHHHHHHhCCCCHHHHHHHHHcCCcchhh-hhccc
Confidence 379999999999999999754 99999999999999999999888765553 44444
No 12
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=93.39 E-value=0.12 Score=46.63 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHHHHHHhhcc-ccccccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWMTK-KENGKRR 117 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVAlR~rwm~~-kEn~KRR 117 (255)
.-.||.||..+|-+...+|... +|.-||..++ +++=+.| |.||+.. +-.-||.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~----~W~~i~k~~gl~R~GKSC--RlRW~NyLrP~ikrg 63 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKH----NGTALPKLAGLRRCGKSC--RLRWTNYLRPDLKRG 63 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCC----CcchhhhhcCCCccchHH--HHHhhcccCCCccCC
Confidence 4689999999999999999877 7999999999 7777665 8889884 3333444
No 13
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=93.24 E-value=0.11 Score=54.70 Aligned_cols=41 Identities=32% Similarity=0.525 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHH
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL 103 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAl 103 (255)
-+..||..|.+.|.++|..|.+| |++|+.||++|||.+|.-
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KD-----F~~v~km~~~KtVaqCVe 658 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKD-----FIFVQKMVKSKTVAQCVE 658 (907)
T ss_pred CcccccHHHHHHHHHHHHHhccc-----HHHHHHHhccccHHHHHH
Confidence 35679999999999999888765 789999999999999754
No 14
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.48 E-value=0.18 Score=45.37 Aligned_cols=41 Identities=27% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHH
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~ 105 (255)
.-.||.||..++-++=++|. .||.+||..||++|--+| ..+
T Consensus 62 rg~fT~eEe~~Ii~lH~~~G-----NrWs~IA~~LPGRTDNeI-KN~ 102 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLG-----NRWSLIAGRLPGRTDNEV-KNH 102 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHC-----cHHHHHHhhCCCcCHHHH-HHH
Confidence 46799999999999988885 479999999999999998 444
No 15
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=89.24 E-value=0.78 Score=46.47 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=47.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccccc
Q 025253 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114 (255)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kEn~ 114 (255)
....-.||..|--.|-+++.+|.++ |.|||..++.||..||.+++..+--++.-
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~dd-----W~kVa~hVg~ks~eqCI~kFL~LPieD~~ 303 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGDD-----WNKVADHVGTKSQEQCILKFLRLPIEDPY 303 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhccc-----HHHHHhccCCCCHHHHHHHHHhcCccchh
Confidence 3455689999999999999999765 89999999999999999999998877654
No 16
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=0.7 Score=43.04 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHhhhcCC-c--hhhHHHHHHHHcCC-CCHHHHHHHHHhhcc
Q 025253 60 TEWTPEEQSILEDLLAKYASD-S--AVNRYAKIAKQLKD-KTVRDVALRCRWMTK 110 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e-~--~~~Ry~KIA~~Lp~-KTvrDVAlR~rwm~~ 110 (255)
..|+.++.+.++.+|..|..+ + ..++|.+++++||. +++.|+.-++.-...
T Consensus 32 ~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (335)
T KOG0724|consen 32 SLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVF 86 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHH
Confidence 459999999999999999975 3 78999999999999 999999888776653
No 17
>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []. The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].
Probab=80.58 E-value=3.3 Score=31.37 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHH
Q 025253 175 ITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSI 216 (255)
Q Consensus 175 ~~~~LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~I 216 (255)
.++.+|++|.+|+--|-.+....+.+|=+..+...-+|+.-+
T Consensus 10 ~IQk~LdEN~~LI~~I~e~qn~Gr~~Ec~qyq~~LhrNL~yL 51 (65)
T PF05030_consen 10 QIQKMLDENDQLIQCIQEYQNKGRAQECVQYQQILHRNLVYL 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998643
No 18
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=80.52 E-value=3.7 Score=41.03 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~ 109 (255)
...+||.+|--.|-+|+..|.=. =|.-||..++.||.+||---+..+.
T Consensus 71 ~~~~WtadEEilLLea~~t~G~G----NW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFG----NWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCC----cHHHHHHHHcccchHHHHHHHHHHH
Confidence 45689999999999999999755 4999999999999999999887765
No 19
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=77.11 E-value=5.8 Score=31.72 Aligned_cols=50 Identities=26% Similarity=0.431 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccc----ccchHHHHHHHHHHHHHHHHhccchh
Q 025253 175 ITGDILEQNAQMFNQISANFGTFQI----RDNIDLLCKARENILSIMNDLNDMPE 225 (255)
Q Consensus 175 ~~~~LLEqNaqllnQI~aNl~t~q~----qeNidLf~~~RdNI~~ILn~m~~mpg 225 (255)
.++.+|+||--|++||..|=.+ ++ .-|..|..+...||..+..--.++..
T Consensus 17 qVQ~iLDqNR~LI~eINqNHeS-r~PdnL~RNV~LIrELN~NI~rVv~lY~dLs~ 70 (87)
T PF07011_consen 17 QVQSILDQNRLLINEINQNHES-RIPDNLSRNVGLIRELNGNISRVVDLYSDLSS 70 (87)
T ss_pred HHHHHHHHhHHHHHHHhhcccc-cCCchhhHhHHHHHHHHhhHHHHHHHHHHHhH
Confidence 5688999999999999999844 43 44689999999999998876555443
No 20
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=73.67 E-value=6.5 Score=39.11 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHhhhcCC-----------------chhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASD-----------------SAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e-----------------~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
-.||.+=-..|.|+|+.||+- .=+.||+|.-. =..+|-++|...++=+.++
T Consensus 77 gvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrt-gktRTrKQVSSHIQVlarr 144 (455)
T KOG3841|consen 77 GVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT-GKTRTRKQVSSHIQVLARR 144 (455)
T ss_pred cccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH
Confidence 359999889999999999982 23789999854 4568999999999988755
No 21
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=73.13 E-value=3 Score=42.56 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHH
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~ 105 (255)
.+||.-|-..||++|.||.++=+-.|- +.||=|+++++.-=|
T Consensus 286 EEWSasEanLFEeALeKyGKDFndIrq----dfLPWKSl~sIveyY 327 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKDFNDIRQ----DFLPWKSLTSIVEYY 327 (693)
T ss_pred hhccchhhHHHHHHHHHhcccHHHHHH----hhcchHHHHHHHHHH
Confidence 579999999999999999999544564 889999999987644
No 22
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=73.04 E-value=9 Score=26.28 Aligned_cols=48 Identities=25% Similarity=0.442 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...+|.++..+||+.... ...++......||..|+ -|..+| ..|+..+
T Consensus 4 r~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~l~-l~~~~V---~~WF~nr 51 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQE-NPYPSKEEREELAKELG-LTERQV---KNWFQNR 51 (57)
T ss_dssp SSSSSHHHHHHHHHHHHH-SSSCHHHHHHHHHHHHT-SSHHHH---HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-hcccccccccccccccc-cccccc---ccCHHHh
Confidence 356899999999999997 55567889999999995 999999 5677654
No 23
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=72.12 E-value=8.9 Score=28.41 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHhh--hcC-------CchhhHHHHHHHHcC----CCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAK--YAS-------DSAVNRYAKIAKQLK----DKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~k--y~~-------e~~~~Ry~KIA~~Lp----~KTvrDVAlR~rwm~~k 111 (255)
..||.+|-..|-+.... +.. -....-|..||..|. ++|+.+|--|++-|.++
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46999999999888877 221 123347999999985 68888888888877754
No 24
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=65.91 E-value=6 Score=41.90 Aligned_cols=39 Identities=31% Similarity=0.383 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHH
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVA 102 (255)
-.||..|...|-.+..+|... -|.|||..||+||-|+.-
T Consensus 413 ~rW~l~edeqL~~~V~~YG~g----~WakcA~~Lp~~t~~q~~ 451 (939)
T KOG0049|consen 413 ERWTLVEDEQLLYAVKVYGKG----NWAKCAMLLPKKTSRQLR 451 (939)
T ss_pred CceeecchHHHHHHHHHHccc----hHHHHHHHccccchhHHH
Confidence 469999999999999999865 599999999999986643
No 25
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=63.99 E-value=11 Score=37.59 Aligned_cols=45 Identities=24% Similarity=0.460 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHH-HHHh
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL-RCRW 107 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAl-R~rw 107 (255)
...||.+|-+.||++|..|.++=...| |..|+.++|+++.- =|.|
T Consensus 277 l~~wsEeEcr~FEegl~~yGKDF~lIr----~nkvrtRsvgElVeyYYlW 322 (445)
T KOG4329|consen 277 LSGWSEEECRNFEEGLELYGKDFHLIR----ANKVRTRSVGELVEYYYLW 322 (445)
T ss_pred cccCCHHHHHHHHHHHHHhcccHHHHH----hcccccchHHHHHHHHHHh
Confidence 457999999999999999999965555 36789999998654 3444
No 26
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=63.95 E-value=7.1 Score=40.22 Aligned_cols=43 Identities=28% Similarity=0.536 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHH
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~r 106 (255)
..|+..|..+|.-+.-+|... -|.+||..|+-||.|+|-.|+-
T Consensus 8 gvwrntEdeilkaav~kyg~n----qws~i~sll~~kt~rqC~~rw~ 50 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKN----QWSRIASLLNRKTARQCKARWE 50 (617)
T ss_pred ceecccHHHHHHHHHHHcchH----HHHHHHHHHhhcchhHHHHHHH
Confidence 469999999999999999865 6999999999999999987753
No 27
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=62.36 E-value=17 Score=37.07 Aligned_cols=44 Identities=18% Similarity=0.444 Sum_probs=37.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHH
Q 025253 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104 (255)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR 104 (255)
+.+.-+||.||.-.||.+...|.. +|.||=.+||.|++-.+.+=
T Consensus 184 ~~~~d~WT~Ed~vlFe~aF~~~GK-----~F~kIrq~LP~rsLaSlvqy 227 (534)
T KOG1194|consen 184 TEFPDEWTAEDIVLFEQAFQFFGK-----DFHKIRQALPHRSLASLVQY 227 (534)
T ss_pred CCCcccchHHHHHHHHHHHHHhcc-----cHHHHHHHccCccHHHHHHH
Confidence 456678999999999999999974 68999999999998765443
No 28
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=60.49 E-value=10 Score=33.21 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCCC-----HHHHHHHHHhhcc
Q 025253 60 TEWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDKT-----VRDVALRCRWMTK 110 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~-~~~Ry~KIA~~Lp~KT-----vrDVAlR~rwm~~ 110 (255)
-.|+.+++ |+-+|+-|-..+ .|.||.. +|--| |+||.-|++|+..
T Consensus 115 ~~w~~~~~--l~~aLAAYNAG~g~V~~y~g----ipp~~et~~Yv~~Vlar~~~~~~ 165 (166)
T cd01021 115 PTWTKEQQ--LKGGISAYNAGAGNVRSYEG----MDIGTTGNDYSNDVVARAQYYKR 165 (166)
T ss_pred CCCchhhh--hhhHHHHhccCHHHHhhcCC----CCCCcchHHHHHHHHHHHHHHhc
Confidence 45888644 445999999986 8999943 55443 8899999999863
No 29
>smart00426 TEA TEA domain.
Probab=59.29 E-value=16 Score=28.06 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCc
Q 025253 60 TEWTPEEQSILEDLLAKYASDS 81 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~ 81 (255)
..|+.+=-.+|.++|..|+...
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~g 25 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPCG 25 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCccC
Confidence 4699999999999999999863
No 30
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=56.80 E-value=8.6 Score=25.75 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 025253 180 LEQNAQMFNQISANFGT 196 (255)
Q Consensus 180 LEqNaqllnQI~aNl~t 196 (255)
+++|..||-|++.||.+
T Consensus 5 ~~eNidLf~~~R~NI~~ 21 (35)
T PF12579_consen 5 LQENIDLFCQTRDNILA 21 (35)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 78999999999999965
No 31
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=54.16 E-value=8 Score=29.81 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
.--||.|+...|..+ ....+.| .+.......|+.|.+|+.+
T Consensus 47 ~GiWT~eDD~~L~~~-----~~~~~~~------L~~khG~~~i~~R~~FL~k 87 (87)
T PF11626_consen 47 PGIWTPEDDEMLRSG-----DKDDIER------LIKKHGEERIERRKEFLEK 87 (87)
T ss_dssp TT---HHHHHHHTS-------HHHHHH------HHHHH-HHHHHHHHHHHT-
T ss_pred CCCcCHHHHHHHHcC-----CHHHHHH------HHHHhCHHHHHHHHHHHhC
Confidence 345999999999655 1112222 2223467888889888753
No 32
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=53.06 E-value=17 Score=39.96 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHH
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVA 102 (255)
.+||.-|-..|-.+..+|..+ -|.+||..+.+||+.+|.
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~----~~~~i~~~~~~k~~~ev~ 863 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRN----DIKSIASEMEGKTEEEVE 863 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHh----HHHHHHHHhcCCCHHHHH
Confidence 568888888888888888754 489999999999999997
No 33
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=52.28 E-value=22 Score=31.48 Aligned_cols=44 Identities=18% Similarity=0.510 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhhhcCC--chhhHHHHHHHHcCCCCHHHHHHHH
Q 025253 61 EWTPEEQSILEDLLAKYASD--SAVNRYAKIAKQLKDKTVRDVALRC 105 (255)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e--~~~~Ry~KIA~~Lp~KTvrDVAlR~ 105 (255)
-||.||...|.+.+.+|-.+ +.+.-|..++..|. +|+-.|..|+
T Consensus 7 awt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~-rt~aac~fRw 52 (170)
T PRK13923 7 AWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK-RTAAACGFRW 52 (170)
T ss_pred hhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-hhHHHHHhHH
Confidence 59999999999999999998 47788888999997 7777666665
No 34
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=51.75 E-value=67 Score=21.53 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...+|.+...+||+.+...+ .++......||..++ -|.++|. .|+..+
T Consensus 4 r~~~~~~~~~~Le~~f~~~~-~P~~~~~~~la~~~~-l~~~qV~---~WF~nr 51 (59)
T cd00086 4 RTRFTPEQLEELEKEFEKNP-YPSREEREELAKELG-LTERQVK---IWFQNR 51 (59)
T ss_pred CCcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHC-cCHHHHH---HHHHHH
Confidence 45789999999999999944 566788999999997 8888886 465544
No 35
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=48.25 E-value=56 Score=21.90 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+|.++..+||+.+.+-+ .++......||..+. -|.++|. .|+..+
T Consensus 5 ~~~~~~~~~~L~~~f~~~~-~P~~~~~~~la~~~~-l~~~qV~---~WF~nr 51 (56)
T smart00389 5 TSFTPEQLEELEKEFQKNP-YPSREEREELAAKLG-LSERQVK---VWFQNR 51 (56)
T ss_pred CcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHC-cCHHHHH---HhHHHH
Confidence 4589999999999998766 455678899999986 7877775 466554
No 36
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=46.88 E-value=33 Score=36.63 Aligned_cols=48 Identities=17% Similarity=0.437 Sum_probs=39.7
Q ss_pred cCCCC-CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHH
Q 025253 55 NSGIS-TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106 (255)
Q Consensus 55 ~~~~~-~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~r 106 (255)
++++. -.||.+|...|-.+..+|.... |.||-..+||++--++--||-
T Consensus 355 dPsikhg~wt~~ED~~L~~AV~~Yg~kd----w~k~R~~vPnRSdsQcR~RY~ 403 (939)
T KOG0049|consen 355 DPSVKHGRWTDQEDVLLVCAVSRYGAKD----WAKVRQAVPNRSDSQCRERYT 403 (939)
T ss_pred CccccCCCCCCHHHHHHHHHHHHhCccc----hhhHHHhcCCccHHHHHHHHH
Confidence 44444 3599999999999999998764 889999999999888777763
No 37
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.00 E-value=29 Score=30.60 Aligned_cols=50 Identities=18% Similarity=0.442 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHhhhcCC--chhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 61 EWTPEEQSILEDLLAKYASD--SAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e--~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
-||.||..+|-+...+|=.+ +...=|..+|..|. +|.--|-.|..-..+|
T Consensus 6 AWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~-RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 6 AWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN-RTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-ccHHHhcchHHHHHHH
Confidence 49999999999999999988 57788999999998 8887665544433333
No 38
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=44.62 E-value=24 Score=35.16 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCC---------------chhhHHHHHHHHcCCCCHHHHHHHHHhh
Q 025253 58 ISTEWTPEEQSILEDLLAKYASD---------------SAVNRYAKIAKQLKDKTVRDVALRCRWM 108 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e---------------~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm 108 (255)
-...|+.+=-.+|.+||+.|++- .-|.+|++..... .+|-++|+.+++-+
T Consensus 48 ~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~-~rt~kqvsshiqvl 112 (431)
T PF01285_consen 48 GEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGK-TRTRKQVSSHIQVL 112 (431)
T ss_dssp GS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCc-ccchhHHHHHHHHH
Confidence 33579999999999999999984 1366888876654 48999999999999
No 39
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=43.96 E-value=41 Score=32.86 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.+-||..|-+.|-.+|..-...+++ -|..||..|+++..-+|.-=++|++.+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~ep-d~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEP-DAAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCc-CHHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 4689999999999999876555554 466699999999999998888888743
No 40
>PLN03162 golden-2 like transcription factor; Provisional
Probab=41.39 E-value=2.2e+02 Score=28.86 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
+....||.|=.++|.+++.....+..+=+-|.=.+.+++-|...|+..+|.+.-.
T Consensus 235 KpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~ 289 (526)
T PLN03162 235 KAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSH 289 (526)
T ss_pred CCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHh
Confidence 3558899999999999999999764333333334679999999999999988754
No 41
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=40.96 E-value=58 Score=25.85 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHhhhcCCc-------hhhHHHHHHHHcCCC-CHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDS-------AVNRYAKIAKQLKDK-TVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~-------~~~Ry~KIA~~Lp~K-TvrDVAlR~rwm~~k 111 (255)
-.||.|+--.|-+||+.|..+. ...=|..|...|... |..+|.-.+|.|.+|
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 4699999999999999995542 123455565665543 888999999999876
No 42
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=37.62 E-value=43 Score=22.63 Aligned_cols=24 Identities=29% Similarity=0.417 Sum_probs=20.3
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHhh
Q 025253 84 NRYAKIAKQLKDKTVRDVALRCRWM 108 (255)
Q Consensus 84 ~Ry~KIA~~Lp~KTvrDVAlR~rwm 108 (255)
.=|..||..|+ -|...|.-|++.|
T Consensus 18 ~s~~~la~~lg-lS~~~v~~Ri~rL 41 (42)
T PF13404_consen 18 RSYAELAEELG-LSESTVRRRIRRL 41 (42)
T ss_dssp S-HHHHHHHHT-S-HHHHHHHHHHH
T ss_pred ccHHHHHHHHC-cCHHHHHHHHHHh
Confidence 45899999998 9999999999987
No 43
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=33.45 E-value=56 Score=28.29 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~ 109 (255)
++||.|+...|.++.. .. .-+..||..|++-|---|+=++.-+.
T Consensus 1 M~Wtde~~~~L~~lw~---~G---~SasqIA~~lg~vsRnAViGk~hRlg 44 (162)
T PF07750_consen 1 MSWTDERVERLRKLWA---EG---LSASQIARQLGGVSRNAVIGKAHRLG 44 (162)
T ss_pred CCCCHHHHHHHHHHHH---cC---CCHHHHHHHhCCcchhhhhhhhhccc
Confidence 5799999998887763 22 34789999999888888888877764
No 44
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=32.52 E-value=97 Score=23.09 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHhhhcC------Cc--hhhHHHHHHHHcCC-----CCHHHHHHHHHhhcc
Q 025253 61 EWTPEEQSILEDLLAKYAS------DS--AVNRYAKIAKQLKD-----KTVRDVALRCRWMTK 110 (255)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~------e~--~~~Ry~KIA~~Lp~-----KTvrDVAlR~rwm~~ 110 (255)
.||.++-++|-++|..... .. ...-|..|+..|-. .|..+|--|++.+.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 5999999999999976622 21 34569999988753 466777777766654
No 45
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=31.02 E-value=39 Score=35.40 Aligned_cols=49 Identities=31% Similarity=0.384 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE 112 (255)
..-.||.||... |.+|..+- -.+|..|+.+|+ +.+.||..|-|.+..--
T Consensus 383 ~rg~wt~ee~ee----L~~l~~~~-g~~W~~Ig~~lg-r~P~~crd~wr~~~~~g 431 (607)
T KOG0051|consen 383 KRGKWTPEEEEE----LKKLVVEH-GNDWKEIGKALG-RMPMDCRDRWRQYVKCG 431 (607)
T ss_pred ccCCCCcchHHH----HHHHHHHh-cccHHHHHHHHc-cCcHHHHHHHHHhhccc
Confidence 445799999654 55666654 358999999998 99999999999988643
No 46
>smart00595 MADF subfamily of SANT domain.
Probab=30.28 E-value=61 Score=24.01 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 85 RYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 85 Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
=|..||..|+. |+.||..|.+-|..
T Consensus 29 aW~~Ia~~l~~-~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEELGL-SVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 59999999986 99999998887763
No 47
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.72 E-value=1e+02 Score=30.21 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhccc
Q 025253 175 ITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDM 223 (255)
Q Consensus 175 ~~~~LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~ILn~m~~m 223 (255)
.+.+++.+|=++|..|-..|. +.|..||..+++|--..|..|++-
T Consensus 259 ~lR~~vq~NP~~L~~lLqql~----~~nP~l~q~I~~n~e~Fl~ll~~~ 303 (378)
T TIGR00601 259 QLRQVVQQNPQLLPPLLQQIG----QENPQLLQQISQHPEQFLQMLNEP 303 (378)
T ss_pred HHHHHHHHCHHHHHHHHHHHH----hhCHHHHHHHHHCHHHHHHHhcCc
Confidence 478899999999999999994 599999999999999999999864
No 48
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=27.41 E-value=78 Score=32.96 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=44.1
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhhcCC---chhhHHHHHHHHcCCCCHHHHHHHHHhhcccccc
Q 025253 52 LRHNSGISTEWTPEEQSILEDLLAKYASD---SAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114 (255)
Q Consensus 52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e---~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kEn~ 114 (255)
+|.-....--|+.= -...|..+..||.+ ..+.-|+.+|.||...|-.+ +-|+.||.|...-
T Consensus 305 MKlP~P~~h~Ws~L-c~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~e-idrItqitK~nie 368 (589)
T PF11229_consen 305 MKLPSPAQHCWSLL-CETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTDTE-IDRITQITKDNIE 368 (589)
T ss_pred hcCCChhhHHHHHH-HHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCHHH-HHHHHHhhhccch
Confidence 34333333456632 23456667788877 47899999999999999998 8999999887653
No 49
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=27.29 E-value=95 Score=30.70 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
...|+.+|--.|-+++.... +--|+-||.-++.++.+||-..+-.|.-
T Consensus 63 ~e~WgadEEllli~~~~TlG----lGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLG----LGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcC----CCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 35799999888888887654 5569999999999999999988877763
No 50
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=26.83 E-value=2.4e+02 Score=20.18 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhc
Q 025253 178 DILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLN 221 (255)
Q Consensus 178 ~LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~ILn~m~ 221 (255)
+.|++--.-|-.++...++.++ +|...|..+|.+|-.|+.-++
T Consensus 14 ~~l~elk~eL~~Lr~q~~~~~l-~n~~~ir~~Rr~IARi~Tvl~ 56 (58)
T PF00831_consen 14 EKLEELKKELFNLRFQKATGQL-ENPHRIREIRRDIARILTVLR 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHh
Confidence 3444444455667777788888 999999999999999887665
No 51
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=26.64 E-value=1.2e+02 Score=26.55 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhccchh
Q 025253 173 GGITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLNDMPE 225 (255)
Q Consensus 173 ~g~~~~LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~ILn~m~~mpg 225 (255)
+-...+|++++.+++|-..+=...+| ++||..|-|=|+.+..-+.+--+
T Consensus 96 dp~Lr~Li~sid~~~n~~kel~aamq----eelfvefadailq~ve~s~dee~ 144 (157)
T KOG2857|consen 96 DPHLRNLIESIDELLNIMKELVAAMQ----EELFVEFADAILQQVEPSPDEEK 144 (157)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhc----chHHHHHHHHHHHhhcCCCcHHH
Confidence 45678899999999998887776666 34999999988877665555433
No 52
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=26.26 E-value=3.2e+02 Score=25.24 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc---ccccc------hHHHHHHHHHHHHHHHHhccchhhhhcC
Q 025253 176 TGDILEQNAQMFNQISANFGTF---QIRDN------IDLLCKARENILSIMNDLNDMPEIMKQM 230 (255)
Q Consensus 176 ~~~LLEqNaqllnQI~aNl~t~---q~qeN------idLf~~~RdNI~~ILn~m~~mpgiM~qM 230 (255)
-..-|.+|.++++-|-.=|..- |..=| ...|.+++-|+++++..+ .+||.+|
T Consensus 97 D~~RL~~n~~AySal~~~L~~v~~~Q~dLNP~~~~L~~~Le~a~~~~qgL~sni---aaIMtaL 157 (214)
T PF06875_consen 97 DEERLKNNYYAYSALLEFLQLVMDDQADLNPFAPELLRQLEEARASAQGLLSNI---AAIMTAL 157 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHc
Confidence 4567999999999888777443 22224 456788999999998776 4788885
No 53
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.21 E-value=38 Score=27.35 Aligned_cols=56 Identities=20% Similarity=0.482 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhc---cchhhhhcCCCCccccchhhhhccC
Q 025253 185 QMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLN---DMPEIMKQMPPLPVKVNDDLANSFL 246 (255)
Q Consensus 185 qllnQI~aNl~t~q~qeNidLf~~~RdNI~~ILn~m~---~mpgiM~qMPPLPVklNe~La~siL 246 (255)
.....+--+...+.+.++++ -.-+.+++..++ ++-|||-|+| ||-.+|+.-+-..+
T Consensus 52 k~~~~~Gi~~~~~~l~~~~~-----~~el~~~i~~lN~D~~V~GIlvq~P-LP~~i~~~~i~~~I 110 (117)
T PF00763_consen 52 KAAEKLGIEFELIELPEDIS-----EEELLELIEKLNEDPSVHGILVQLP-LPKHIDERKILEAI 110 (117)
T ss_dssp HHHHHHT-EEEEEEE-TTSS-----HHHHHHHHHHHHH-TT-SEEEEESS-SSTTSHHHHHHHTS
T ss_pred HHHHHcCCceEEEECCCCcC-----HHHHHHHHHHHhCCCCCCEEEEcCC-CCCCccHHHHHhcc
Confidence 34444444445555544432 123333444444 6679999996 79999987554443
No 54
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.65 E-value=48 Score=31.44 Aligned_cols=64 Identities=17% Similarity=0.366 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhc---cchhhhhcCCCCccccchh-hhhccCCC
Q 025253 179 ILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLN---DMPEIMKQMPPLPVKVNDD-LANSFLPR 248 (255)
Q Consensus 179 LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~ILn~m~---~mpgiM~qMPPLPVklNe~-La~siLP~ 248 (255)
-.+........+-=+...+++.+++. .+-+.++++.++ ++-|||-|+| ||-.+|++ +++.|-|.
T Consensus 55 Yv~~k~k~~~~~Gi~~~~~~l~~~~~-----~~el~~~I~~LN~D~~V~GIlvqlP-LP~~i~~~~i~~~I~p~ 122 (287)
T PRK14176 55 YVRLKHKACERVGIRAEDQFLPADTT-----QEELLELIDSLNKRKDVHGILLQLP-LPKHLDPQEAMEAIDPA 122 (287)
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCCC-----HHHHHHHHHHHhCCCCCCeEEEcCC-CCCCCCHHHHHhccCcc
Confidence 33444455555544445556665542 344555666666 4559999997 79999987 55555554
No 55
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=24.68 E-value=29 Score=24.94 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=17.6
Q ss_pred HHHHHHH--HcCCCCHHHHHHHHHhhcccc
Q 025253 85 RYAKIAK--QLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 85 Ry~KIA~--~Lp~KTvrDVAlR~rwm~~kE 112 (255)
+-.+||. .--++|||||++...||...+
T Consensus 13 ~aa~iAk~A~~~g~svre~v~~~g~lt~ee 42 (55)
T PF10415_consen 13 KAAEIAKEALAEGRSVREVVLEEGLLTEEE 42 (55)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCCCHHH
Confidence 3444553 346799999999999998654
No 56
>cd06929 NR_LBD_F1 Ligand-binding domain of nuclear receptor family 1. Ligand-binding domain (LBD) of nuclear receptor (NR) family 1: This is one of the major subfamily of nuclear receptors, including thyroid receptor, retinoid acid receptor, ecdysone receptor, farnesoid X receptor, vitamin D receptor, and other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=24.67 E-value=1.4e+02 Score=24.56 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHhhhcCC---chhhHHHHHHHHcCCCCHHHHHHHHH
Q 025253 63 TPEEQSILEDLLAKYASD---SAVNRYAKIAKQLKDKTVRDVALRCR 106 (255)
Q Consensus 63 T~eEq~~LE~~L~ky~~e---~~~~Ry~KIA~~Lp~KTvrDVAlR~r 106 (255)
-.+.|..+-++|.+|... ....||.+|-..|| ++|.++.+..
T Consensus 127 v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~Ll~~l~--~lr~l~~~~~ 171 (174)
T cd06929 127 VEKLQERLLEALQRYLKVNHPDAPQMFAKLLKKLT--ELRTLNELHA 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhH--HHHHHHHHHH
Confidence 356778888888887421 35689999999999 5888887753
No 57
>PF15583 Imm41: Immunity protein 41
Probab=24.23 E-value=1e+02 Score=27.14 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
+...=|.||...|..+|..|+..| ..| -++.|+|+-...+.|--|.-+.+
T Consensus 107 IrI~at~EE~~~~~~aL~dF~~~p--~~Y-dL~Em~deedi~Emae~~e~lr~ 156 (158)
T PF15583_consen 107 IRITATSEENTAINKALKDFARNP--LEY-DLSEMCDEEDIYEMAEICEELRK 156 (158)
T ss_pred EEEecCHHHHHHHHHHHHHHHhCH--Hhh-hHHHhCCHHHHHHHHHHHHHHHh
Confidence 556779999999999999999987 355 57899999999999988876643
No 58
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=21.62 E-value=3.2e+02 Score=22.57 Aligned_cols=51 Identities=25% Similarity=0.452 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH------------cCCCCHHHHHHHHHhhc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ------------LKDKTVRDVALRCRWMT 109 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~------------Lp~KTvrDVAlR~rwm~ 109 (255)
....||.||.+-|--.|.+|.=+. ..-|.+|-+. +..+|+-++..||.-+-
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~-~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDA-EGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCC-CchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 457899999999999999999864 3567777665 46799999999998775
No 59
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.84 E-value=73 Score=30.06 Aligned_cols=60 Identities=22% Similarity=0.539 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhc---cchhhhhcCCCCccccchh-hhhccCCC
Q 025253 183 NAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLN---DMPEIMKQMPPLPVKVNDD-LANSFLPR 248 (255)
Q Consensus 183 NaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~ILn~m~---~mpgiM~qMPPLPVklNe~-La~siLP~ 248 (255)
.......|-=+...+++.+++. .+-+.+.++.++ ++-|||-|+| ||-.+|++ +.+.|-|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~~-----~~el~~~I~~lN~d~~V~GIlvqlP-LP~~~~~~~i~~~I~p~ 116 (278)
T PRK14172 53 QEKVANSLGIDFKKIKLDESIS-----EEDLINEIEELNKDNNVHGIMLQLP-LPKHLDEKKITNKIDAN 116 (278)
T ss_pred HHHHHHHcCCEEEEEECCCCCC-----HHHHHHHHHHHhCCCCCCeEEEcCC-CCCCCCHHHHHhccCcc
Confidence 3444444444445556666642 233455556665 4569999997 79999976 55555554
No 60
>cd04753 Commd5_HCaRG COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=20.31 E-value=82 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.1
Q ss_pred cccchHHHHHHHHHHHHHHHHhccc
Q 025253 199 IRDNIDLLCKARENILSIMNDLNDM 223 (255)
Q Consensus 199 ~qeNidLf~~~RdNI~~ILn~m~~m 223 (255)
+.=-++-|++.|.||-.+|++|.++
T Consensus 76 fe~~~~kF~~Lry~~a~~l~em~~l 100 (110)
T cd04753 76 FEVPVAKFHELRYNVALILKEMNDL 100 (110)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788999999999999999874
Done!