Query 025253
Match_columns 255
No_of_seqs 112 out of 133
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgx_A KIAA1903 protein; MYB D 99.3 2.3E-12 7.9E-17 97.1 7.2 51 60-111 9-59 (73)
2 4eef_G F-HB80.4, designed hema 99.3 3E-13 1E-17 102.3 -1.1 47 59-106 20-66 (74)
3 2cqq_A RSGI RUH-037, DNAJ homo 99.2 5.5E-11 1.9E-15 88.8 6.8 51 59-111 8-58 (72)
4 2cqr_A RSGI RUH-043, DNAJ homo 99.1 1.2E-10 4E-15 87.3 7.8 53 58-111 17-69 (73)
5 2cjj_A Radialis; plant develop 99.1 6.8E-11 2.3E-15 92.4 6.4 52 59-111 8-59 (93)
6 2yum_A ZZZ3 protein, zinc fing 99.0 9.6E-10 3.3E-14 81.1 6.7 53 59-111 8-61 (75)
7 2eqr_A N-COR1, N-COR, nuclear 98.7 4.1E-08 1.4E-12 70.4 6.9 49 58-111 11-59 (61)
8 2yus_A SWI/SNF-related matrix- 98.6 9.3E-08 3.2E-12 72.2 6.5 51 54-109 13-63 (79)
9 2cu7_A KIAA1915 protein; nucle 98.6 8.7E-08 3E-12 70.3 5.7 48 60-112 10-57 (72)
10 2yqk_A Arginine-glutamic acid 98.5 2.6E-07 8.8E-12 66.8 6.8 47 59-111 9-56 (63)
11 2crg_A Metastasis associated p 98.4 5.7E-07 1.9E-11 66.4 6.5 50 58-112 7-57 (70)
12 1x41_A Transcriptional adaptor 98.4 6.2E-07 2.1E-11 63.7 6.1 49 59-111 8-56 (60)
13 2elk_A SPCC24B10.08C protein; 98.2 1.9E-06 6.5E-11 60.9 6.1 46 59-108 9-55 (58)
14 1guu_A C-MYB, MYB proto-oncoge 98.2 2.2E-06 7.4E-11 58.7 5.3 47 60-110 4-50 (52)
15 2d9a_A B-MYB, MYB-related prot 98.2 3.4E-06 1.2E-10 59.4 5.9 48 60-111 9-56 (60)
16 2dim_A Cell division cycle 5-l 98.2 4.3E-06 1.5E-10 60.7 6.4 49 60-112 10-58 (70)
17 1gvd_A MYB proto-oncogene prot 98.1 4.6E-06 1.6E-10 57.2 5.2 46 60-109 4-49 (52)
18 2din_A Cell division cycle 5-l 98.1 2.5E-06 8.7E-11 61.3 3.7 47 60-112 10-56 (66)
19 2iw5_B Protein corest, REST co 98.0 9.5E-06 3.2E-10 72.7 6.9 50 57-111 131-180 (235)
20 1w0t_A Telomeric repeat bindin 98.0 1.3E-05 4.5E-10 55.3 5.6 48 60-111 3-52 (53)
21 2ltp_A Nuclear receptor corepr 97.2 1.1E-06 3.7E-11 67.3 0.0 48 60-112 17-64 (89)
22 1gv2_A C-MYB, MYB proto-oncoge 97.9 1.2E-05 4.3E-10 61.8 5.1 48 59-111 56-103 (105)
23 2k9n_A MYB24; R2R3 domain, DNA 97.9 1.6E-05 5.4E-10 61.9 5.0 47 60-111 54-100 (107)
24 1ity_A TRF1; helix-turn-helix, 97.8 4.5E-05 1.6E-09 55.2 6.9 51 58-112 9-61 (69)
25 1h8a_C AMV V-MYB, MYB transfor 97.8 2.2E-05 7.4E-10 62.7 4.9 48 59-111 79-126 (128)
26 3osg_A MYB21; transcription-DN 97.8 2.3E-05 7.9E-10 62.7 4.7 47 60-111 63-109 (126)
27 3sjm_A Telomeric repeat-bindin 97.8 6.9E-05 2.3E-09 54.2 6.7 48 59-110 11-60 (64)
28 4a69_C Nuclear receptor corepr 97.7 5E-05 1.7E-09 58.9 6.1 43 58-105 42-84 (94)
29 1gv2_A C-MYB, MYB proto-oncoge 97.7 3.4E-05 1.2E-09 59.4 4.9 47 60-110 5-51 (105)
30 2llk_A Cyclin-D-binding MYB-li 97.7 7.8E-05 2.7E-09 55.7 6.6 50 55-110 18-68 (73)
31 2k9n_A MYB24; R2R3 domain, DNA 97.7 4.7E-05 1.6E-09 59.1 5.3 47 60-110 2-48 (107)
32 3zqc_A MYB3; transcription-DNA 97.6 7.5E-05 2.6E-09 60.0 5.2 49 60-113 55-103 (131)
33 1h89_C C-MYB, MYB proto-oncoge 97.6 6.6E-05 2.3E-09 61.8 5.0 48 59-111 110-157 (159)
34 3osg_A MYB21; transcription-DN 97.6 7.6E-05 2.6E-09 59.6 5.2 47 59-110 11-57 (126)
35 1ug2_A 2610100B20RIK gene prod 97.6 0.00048 1.6E-08 54.1 9.3 57 52-110 26-82 (95)
36 1h8a_C AMV V-MYB, MYB transfor 97.5 0.00014 4.8E-09 57.9 6.1 49 59-111 27-75 (128)
37 1x58_A Hypothetical protein 49 97.3 0.00041 1.4E-08 50.7 5.6 51 58-113 7-60 (62)
38 3zqc_A MYB3; transcription-DNA 97.2 0.00017 5.9E-09 57.8 3.1 48 60-111 3-50 (131)
39 2xag_B REST corepressor 1; ami 97.2 0.00053 1.8E-08 66.9 6.9 50 57-111 378-427 (482)
40 1h89_C C-MYB, MYB proto-oncoge 97.2 0.00051 1.7E-08 56.5 5.6 50 59-112 58-107 (159)
41 2ckx_A NGTRF1, telomere bindin 97.0 0.00096 3.3E-08 50.8 5.4 47 61-111 2-52 (83)
42 2roh_A RTBP1, telomere binding 96.7 0.0043 1.5E-07 50.5 7.5 51 57-111 29-83 (122)
43 2aje_A Telomere repeat-binding 96.7 0.0024 8.1E-08 50.7 5.5 53 55-111 9-65 (105)
44 2xag_B REST corepressor 1; ami 96.6 0.00034 1.2E-08 68.3 0.0 48 58-111 188-235 (482)
45 1ign_A Protein (RAP1); RAP1,ye 96.3 0.0037 1.3E-07 56.4 4.8 53 60-112 9-62 (246)
46 2lr8_A CAsp8-associated protei 95.1 0.00089 3E-08 50.0 0.0 56 52-110 7-62 (70)
47 3hm5_A DNA methyltransferase 1 96.0 0.0069 2.4E-07 47.3 4.5 54 60-118 31-89 (93)
48 2juh_A Telomere binding protei 95.7 0.011 3.7E-07 48.1 4.6 49 58-110 16-68 (121)
49 1ofc_X ISWI protein; nuclear p 94.1 0.048 1.6E-06 50.4 4.8 39 60-102 111-149 (304)
50 1irz_A ARR10-B; helix-turn-hel 92.1 0.49 1.7E-05 34.5 6.6 52 58-111 6-59 (64)
51 4b4c_A Chromodomain-helicase-D 90.4 0.26 8.9E-06 41.5 4.4 43 59-103 7-51 (211)
52 4iej_A DNA methyltransferase 1 87.0 0.9 3.1E-05 35.4 5.0 48 60-112 31-83 (93)
53 2y9y_A Imitation switch protei 83.5 1.2 4.2E-05 42.2 5.1 39 60-102 124-163 (374)
54 1fex_A TRF2-interacting telome 78.1 4.4 0.00015 28.4 5.3 49 59-109 2-55 (59)
55 2dmt_A Homeobox protein BARH-l 69.8 23 0.00079 25.3 7.6 52 55-111 17-68 (80)
56 2da3_A Alpha-fetoprotein enhan 65.3 14 0.00046 26.2 5.5 51 56-111 18-68 (80)
57 1wh5_A ZF-HD homeobox family p 64.4 38 0.0013 24.5 8.5 51 57-111 19-72 (80)
58 2ebi_A DNA binding protein GT- 61.9 8.8 0.0003 28.0 4.0 53 59-111 4-65 (86)
59 2hzd_A Transcriptional enhance 60.3 11 0.00039 28.6 4.4 52 59-111 6-74 (82)
60 1ofc_X ISWI protein; nuclear p 59.2 20 0.00067 33.0 6.7 54 56-110 209-274 (304)
61 1wh7_A ZF-HD homeobox family p 56.6 54 0.0019 23.8 8.6 49 58-111 20-72 (80)
62 2dmp_A Zinc fingers and homeob 56.0 36 0.0012 25.0 6.6 45 62-111 20-64 (89)
63 2ecb_A Zinc fingers and homeob 42.6 78 0.0027 23.7 6.6 46 61-111 17-62 (89)
64 2hi3_A Homeodomain-only protei 40.0 80 0.0027 22.0 6.0 50 58-111 5-54 (73)
65 2dmn_A Homeobox protein TGIF2L 39.3 58 0.002 23.5 5.3 50 58-111 10-61 (83)
66 1uhs_A HOP, homeodomain only p 38.0 85 0.0029 21.7 5.9 50 58-111 4-53 (72)
67 3a02_A Homeobox protein arista 35.8 84 0.0029 20.8 5.4 49 58-111 2-50 (60)
68 2kt0_A Nanog, homeobox protein 35.4 1.2E+02 0.004 21.5 8.5 50 57-111 24-73 (84)
69 1puf_A HOX-1.7, homeobox prote 33.5 1.2E+02 0.0042 21.2 7.0 54 53-111 11-64 (77)
70 2h1k_A IPF-1, pancreatic and d 33.3 67 0.0023 21.6 4.6 48 59-111 7-54 (63)
71 2cuf_A FLJ21616 protein; homeo 31.7 86 0.0029 23.0 5.3 37 57-94 9-45 (95)
72 1ezj_A Nucleocapsid phosphopro 30.8 46 0.0016 26.4 3.7 36 177-217 65-100 (115)
73 2ecc_A Homeobox and leucine zi 30.7 1.5E+02 0.0051 21.6 6.4 48 59-111 7-54 (76)
74 2ly9_A Zinc fingers and homeob 28.2 1.5E+02 0.005 20.4 6.3 50 57-111 8-57 (74)
75 2xb0_X Chromo domain-containin 27.1 1.1E+02 0.0039 27.4 6.1 52 59-112 3-63 (270)
76 3nar_A ZHX1, zinc fingers and 27.1 1.4E+02 0.0049 21.8 5.8 49 58-111 28-76 (96)
77 3o6q_A Stage II sporulation pr 27.0 40 0.0014 28.4 2.9 24 175-198 7-30 (157)
78 2dmu_A Homeobox protein goosec 26.9 1.4E+02 0.0049 20.3 5.5 49 58-111 10-58 (70)
79 1pve_A HHR23B, UV excision rep 26.6 45 0.0015 24.6 2.8 44 175-222 17-60 (72)
80 1ign_A Protein (RAP1); RAP1,ye 25.6 1.4E+02 0.0048 26.7 6.4 28 84-111 172-199 (246)
81 2f4m_B UV excision repair prot 25.5 79 0.0027 22.4 3.9 44 175-222 15-58 (61)
82 2da1_A Alpha-fetoprotein enhan 24.6 1.7E+02 0.0057 19.9 5.8 49 58-111 10-58 (70)
83 1x2m_A LAG1 longevity assuranc 24.2 87 0.003 22.2 3.9 43 65-111 10-52 (64)
84 2da6_A Hepatocyte nuclear fact 23.4 1.2E+02 0.0039 23.6 4.8 36 57-93 8-43 (102)
85 4g9s_A Lysozyme G, goose-type 23.2 33 0.0011 28.6 1.8 45 61-110 135-184 (187)
86 2djn_A Homeobox protein DLX-5; 22.7 1.9E+02 0.0064 19.7 5.6 49 58-111 10-58 (70)
87 1bw5_A ISL-1HD, insulin gene e 22.5 1.8E+02 0.0062 19.5 5.5 49 58-111 6-54 (66)
88 1k61_A Mating-type protein alp 22.3 1.7E+02 0.0059 19.2 5.8 48 60-111 3-52 (60)
89 2ko4_A Mediator of RNA polymer 21.7 42 0.0014 25.5 1.8 25 215-239 11-38 (81)
90 2dn0_A Zinc fingers and homeob 21.6 2.1E+02 0.0071 19.9 6.8 48 59-111 12-59 (76)
91 2k40_A Homeobox expressed in E 21.3 1.9E+02 0.0066 19.4 5.2 48 59-111 5-52 (67)
92 2da5_A Zinc fingers and homeob 21.2 1.5E+02 0.005 20.8 4.7 47 60-111 12-58 (75)
93 2da2_A Alpha-fetoprotein enhan 21.0 2E+02 0.0069 19.5 6.7 49 58-111 10-58 (70)
94 2cpz_A CUG triplet repeat RNA- 21.0 1.9E+02 0.0065 20.8 5.4 25 52-79 27-51 (115)
95 2vi6_A Homeobox protein nanog; 20.9 1.9E+02 0.0065 19.1 5.7 48 59-111 7-54 (62)
96 2e1o_A Homeobox protein PRH; D 20.8 2.1E+02 0.0071 19.5 5.6 49 58-111 10-58 (70)
97 1x2n_A Homeobox protein pknox1 20.7 2.1E+02 0.0072 19.6 5.6 50 58-111 10-61 (73)
98 2dms_A Homeobox protein OTX2; 20.6 2.2E+02 0.0077 19.8 6.6 50 57-111 9-58 (80)
No 1
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.33 E-value=2.3e-12 Score=97.10 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..||.||+++||++|+.|+.+. .+||.+||+.+|+||+.||..||..+...
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~t-p~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHK-PGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSS-SSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCC-ccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4699999999999999999986 68999999999999999999999998554
No 2
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.26 E-value=3e-13 Score=102.30 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHH
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~r 106 (255)
+..||.||+++||.+|++||.++ .+||.|||+.||+||+.||..+|+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~t-pdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDT-PDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSC-CSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCC-CcHHHHHHHHcCCCCHHHHHHHHH
Confidence 55799999999999999999997 699999999999999999988775
No 3
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.16 E-value=5.5e-11 Score=88.83 Aligned_cols=51 Identities=29% Similarity=0.562 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||+++||.+|++||.++ ..||.+||+.| +||+.||..|++-|.+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t-~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGT-PGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTC-TTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCC-CcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45799999999999999999987 68999999998 79999999999988544
No 4
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.14 E-value=1.2e-10 Score=87.34 Aligned_cols=53 Identities=26% Similarity=0.441 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
....||.||+++|+++|.+|+.+. ..||.+||.+||+||+.+|-.||..+...
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~-~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGS-SDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSS-HHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCC-CchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 346799999999999999999875 68999999999999999999999987654
No 5
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.13 E-value=6.8e-11 Score=92.39 Aligned_cols=52 Identities=23% Similarity=0.496 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||+++|+++|++|+.+. ..||.+||+.||+||+.||..||+-+.++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~-~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDT-PDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTC-TTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCC-CchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999885 58999999999999999999999988654
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=9.6e-10 Score=81.06 Aligned_cols=53 Identities=38% Similarity=0.547 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~-~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||+.+|++++.+|..+. ...+|.+||..||+||.+||..|++++..+
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 35799999999999999999874 568999999999999999999999777765
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=4.1e-08 Score=70.36 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
....||.||.++|+++|.+|+. +|.+||..||+||+.||..+|--..+.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-----~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-----NFGLIASYLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-----CHHHHHHHCTTSCHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHHHhcCC
Confidence 4468999999999999999973 699999999999999998776443333
No 8
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.58 E-value=9.3e-08 Score=72.24 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=44.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253 54 HNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (255)
Q Consensus 54 ~~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~ 109 (255)
........||.||..+|.+++.+|. .+|.+||..||+||.++|..|+.-+.
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-----~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-----DDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-----SCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-----CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3334567899999999999999999 48999999999999999999887663
No 9
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.56 E-value=8.7e-08 Score=70.31 Aligned_cols=48 Identities=35% Similarity=0.538 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE 112 (255)
..||.||..+|.+++.+|.. +|.+||..||+||..+|-.|++.+.++.
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999986 8999999999999999999999887663
No 10
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=2.6e-07 Score=66.82 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~-~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||.++||++|.+|+.+ |.+||. +||+||+.||..-| .+-+|
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v~fY-Y~wKk 56 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKN-----FFRIRKELLPNKETGELITFY-YYWKK 56 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSC-----HHHHHHHSCTTSCHHHHHHHH-HHHHC
T ss_pred CCCcCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCcHHHHHHHH-hcccC
Confidence 3689999999999999999997 899998 69999999996443 44444
No 11
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.39 E-value=5.7e-07 Score=66.41 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCCCHHHHHHHHHhhcccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~-~Lp~KTvrDVAlR~rwm~~kE 112 (255)
....||.||.++||++|.+|+.+ |.+||. +||+||+.||..=|=-..+.+
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v~fYY~wKkt~ 57 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYYMWKTTD 57 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCCHHHHHHHHHhhcCCc
Confidence 34579999999999999999997 899999 699999999997765333333
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.38 E-value=6.2e-07 Score=63.70 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||..+|.+++.+|.. .+|.+||..||+||.++|..|+..+...
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 357999999999999999974 4799999999999999999998877654
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.24 E-value=1.9e-06 Score=60.94 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHHHHHHhh
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWM 108 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVAlR~rwm 108 (255)
...||.||..+|.+++.+|.. .+|.+||..+| +||.++|..|+..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~----~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL----GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT----TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 457999999999999999963 57999999999 99999999988754
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.19 E-value=2.2e-06 Score=58.72 Aligned_cols=47 Identities=26% Similarity=0.394 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
..||.||..+|.++..+|.. .+|.+||..||++|..+|-.|++.+..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGT----DDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCS----SCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 57999999999999999975 379999999999999999998876543
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.16 E-value=3.4e-06 Score=59.45 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..||.||..+|.++..+|.. .+|.+||..||++|..+|-.|++.+...
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQ----QDWKFLASHFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCT----TCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence 57999999999999999973 4799999999999999999998877654
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=4.3e-06 Score=60.72 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE 112 (255)
-.||.||..+|.++..+|.. .+|.+||..||++|.++|-.|++.+....
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~ 58 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGK----NQWSRIASLLHRKSAKQCKARWYEWLDPS 58 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS----SCHHHHHHHSTTCCHHHHHHHHHHTSCSS
T ss_pred CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHhcCCCHHHHHHHHHHHcCCc
Confidence 47999999999999999973 47999999999999999999988877654
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.08 E-value=4.6e-06 Score=57.17 Aligned_cols=46 Identities=33% Similarity=0.464 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~ 109 (255)
..||.||..+|.++..+|.. .+|.+||..||++|..+|-.|+..+.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCc----ChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 47999999999999999974 46999999999999999988877554
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=2.5e-06 Score=61.27 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE 112 (255)
..||.||..+|.++...|.. +|.+||. +|+||.++|-.|++.+..+.
T Consensus 10 ~~WT~eED~~L~~~~~~~g~-----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPT-----QWRTIAP-IIGRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTT-----CHHHHHH-HHSSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-----CHHHHhc-ccCcCHHHHHHHHHHHhChH
Confidence 57999999999999888874 8999999 88999999999999887664
No 19
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.00 E-value=9.5e-06 Score=72.71 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.....||.||.++|+++|.+|..+ |.+||..|++||+.+|-..+.+..++
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD-----W~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC-----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 356689999999999999999875 99999999999999999888766654
No 20
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.96 E-value=1.3e-05 Score=55.28 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp--~KTvrDVAlR~rwm~~k 111 (255)
..||.||..+|.++..+|.. .+|.+||..+| ++|..||-.|++-+.+.
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 47999999999999999963 47999999999 99999999988877653
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.19 E-value=1.1e-06 Score=67.30 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE 112 (255)
..||.||..+|.+++..|.. +|.+||..||++|..+|-.|+..+.++.
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~-----~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGR-----NWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 47999999999999999964 6999999999999999999988776654
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.90 E-value=1.2e-05 Score=61.82 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||..+|.+++.+|.. +|.+||..||++|..+|.-|++-+.++
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999973 799999999999999999998876654
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.85 E-value=1.6e-05 Score=61.88 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..||.||..+|.+++.+|.. +|.+||..||++|..+|..|++.+.++
T Consensus 54 ~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEYGP-----KWNKISKFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999974 799999999999999999998887765
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.83 E-value=4.5e-05 Score=55.19 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CCCHHHHHHHHHhhcccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp--~KTvrDVAlR~rwm~~kE 112 (255)
....||.||..+|.++..+|.. .+|.+||..|| ++|..+|-.|++-+.+..
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCS----SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCC
Confidence 4568999999999999999963 47999999999 999999999988887664
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.78 E-value=2.2e-05 Score=62.68 Aligned_cols=48 Identities=29% Similarity=0.414 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||..+|.+++.+|.. +|.+||..||++|..+|.-|++-+.++
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-----CHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 357999999999999999974 799999999999999999998877654
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.76 E-value=2.3e-05 Score=62.68 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..||.||..+|.+++.+|.. +|.+||..||++|..+|--|++.+.+|
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGR-----QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999973 699999999999999999988887765
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.75 E-value=6.9e-05 Score=54.22 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CCCHHHHHHHHHhhcc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTK 110 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp--~KTvrDVAlR~rwm~~ 110 (255)
...||.||..+|.++..+|... .|.+||..+| ++|..||--|++-|.+
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~----~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEG----NWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT----CHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCC----chHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 3579999999999999999643 6999999977 9999998888876654
No 28
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.74 E-value=5e-05 Score=58.90 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHH
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~ 105 (255)
....||.||..+|+++|..|+++ |-+||..||+||+.||..=|
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~-----F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTC-----HHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC-----HHHHHHHcCCCCHHHHHHHH
Confidence 45679999999999999999864 78999999999999998655
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.71 E-value=3.4e-05 Score=59.36 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
..||.||..+|.++..+|.. .+|.+||..||++|.++|..|++-+..
T Consensus 5 ~~WT~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhCC----CcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence 57999999999999999975 369999999999999999888776544
No 30
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.71 E-value=7.8e-05 Score=55.66 Aligned_cols=50 Identities=30% Similarity=0.460 Sum_probs=42.0
Q ss_pred cCCCC-CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 55 NSGIS-TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 55 ~~~~~-~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
++.+. ..||.||..+|.++..+|.. +|.+||..| ++|..+|--|++.+.+
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-----kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-----DWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-----CHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-----CHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 44433 58999999999999999984 499999999 9999999988887654
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.68 E-value=4.7e-05 Score=59.15 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
..||.||..+|.++..+|.. .+|.+||..||++|.++|-.|+.-+..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA----KDWIRISQLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS----SCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCC----CCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence 36999999999999999974 479999999999999999888765443
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.58 E-value=7.5e-05 Score=59.96 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKEN 113 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kEn 113 (255)
..||.||..+|.++..+|.. +|.+||..||++|..+|--|++-+.++..
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGS-----KWSVIAKLIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCS-----CHHHHTTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999984 69999999999999999988887776654
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.57 E-value=6.6e-05 Score=61.79 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||..+|.+++.+|.. +|.+||..||++|.-+|--|++.+.++
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred ccCCChHHHHHHHHHHHHHCC-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 368999999999999999974 899999999999999999998877655
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.57 E-value=7.6e-05 Score=59.65 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
...||.||..+|.++..+|.. +|.+||..||++|.++|..|++-+..
T Consensus 11 k~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGS-----DWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTT-----CHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 457999999999999999964 69999999999999999888876553
No 35
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.56 E-value=0.00048 Score=54.12 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=46.7
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 52 LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
+++.......||.||.+++-....+-... .++|..||..|.||+.-+|-.|++.+-+
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s--~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQEQGAQ--PHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHTTSC--TTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEeccccCHHHHHHHHhcCCC--hhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 45555678899999999887776665443 4789999999999999999999998753
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.52 E-value=0.00014 Score=57.91 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...||.||..+|.+++.+|.. .+|.+||..||++|.++|-.|+.-+...
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGP----KRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCS----CCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 357999999999999999975 3699999999999999998888766544
No 37
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.29 E-value=0.00041 Score=50.74 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH---HcCCCCHHHHHHHHHhhccccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAK---QLKDKTVRDVALRCRWMTKKEN 113 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~---~Lp~KTvrDVAlR~rwm~~kEn 113 (255)
....||.||...|.++..+|.. .|.+|+. .++++|-=|+.-|+|-|.+++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-----HWNSILWSFPFQKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-----CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-----hHHHHHHhCCCccCcccchHHHHHHHHHhccc
Confidence 5578999999999999999974 6999994 7889999999999999988764
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.20 E-value=0.00017 Score=57.80 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
-.||.||..+|.+++.+|.. ..|.+||..||++|.++|..|++-+...
T Consensus 3 g~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 50 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGP----QNWPRITSFLPNRSPKQCRERWFNHLDP 50 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCS----CCGGGGTTSCTTSCHHHHHHHHHHHTST
T ss_pred CCCCHHHHHHHHHHHHHhCc----CCHHHHHHHHCCCCHHHHHHHHhhccCc
Confidence 46999999999999999964 3699999999999999998888665543
No 39
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.19 E-value=0.00053 Score=66.92 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.+...||.||...|.++|.+|..+ |.+||..|++||+.+|-.-+.|+.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkd-----w~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTC-----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999875 99999999999999999988765543
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.17 E-value=0.00051 Score=56.47 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~kE 112 (255)
...||.||..+|.++..+|.. .+|.+||..||++|..+|..|++-+....
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS----CCHHHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred CCCCChHHHHHHHHHHHHhCc----ccHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 468999999999999999975 46999999999999999998887665543
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.01 E-value=0.00096 Score=50.79 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH----cCCCCHHHHHHHHHhhccc
Q 025253 61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ----LKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~----Lp~KTvrDVAlR~rwm~~k 111 (255)
.||.||..+|-++..+|... +|.+||.. |+++|..||-.|.+=|.++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g----~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTG----RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSS----CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC----CcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 69999999999999999753 79999997 9999999998888877754
No 42
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.74 E-value=0.0043 Score=50.54 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCCCHHHHHHHHHhhccc
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L----p~KTvrDVAlR~rwm~~k 111 (255)
.....||.||..+|-++..+|.. -+|.+||..+ +++|-.|+--|.|=|.++
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGT----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 35578999999999999999975 3799999985 899999988888777754
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.69 E-value=0.0024 Score=50.75 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=44.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCCCHHHHHHHHHhhccc
Q 025253 55 NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 55 ~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L----p~KTvrDVAlR~rwm~~k 111 (255)
.......||.||..+|-++..+|... +|.+|+..+ +++|..||--|.|=|.++
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g----~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTG----RWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSS----SHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----ChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34456789999999999999999753 799999976 899998888888877765
No 44
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.59 E-value=0.00034 Score=68.27 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
....||.+|.++||++|.+|+++ |.+|+..||+||+.||.. +-++-+|
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKd-----F~~I~~~lp~Ksv~e~V~-yYY~WKK 235 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKT-----FHRIQQMLPDKSIASLVK-FYYSWKK 235 (482)
T ss_dssp ------------------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCcc-----HHHHHHHcCCCCHHHHHH-Hhccccc
Confidence 34579999999999999999987 688999999999999984 3333444
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.27 E-value=0.0037 Score=56.40 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhH-HHHHHHHcCCCCHHHHHHHHHhhcccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNR-YAKIAKQLKDKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~R-y~KIA~~Lp~KTvrDVAlR~rwm~~kE 112 (255)
..||.||..+|-++..+|+..-.-.+ |.+||..||++|.++|=-|++...++.
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence 48999999999999999987521223 999999999999999999999877664
No 46
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.13 E-value=0.00089 Score=50.04 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=45.1
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhcc
Q 025253 52 LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~ 110 (255)
+++...+-..||.||.+++-....+-.. +...|..||..| |||+-+|-.|++.+-+
T Consensus 7 ~~~~ge~vvlWTReeDR~IL~~cq~~G~--s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 7 IKKKGEIIILWTRNDDRVILLECQKRGP--SSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5666667889999999987666554433 347999999999 9999999999998764
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.01 E-value=0.0069 Score=47.30 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc-----CCCCHHHHHHHHHhhcccccccccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-----KDKTVRDVALRCRWMTKKENGKRRK 118 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L-----p~KTvrDVAlR~rwm~~kEn~KRRK 118 (255)
.+||.||-..|-++..+|. .||+.||..+ +++|+.|+--|+--+.++-...|.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fd-----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~ 89 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHhC-----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999996 5999999999 5899999999998888776555554
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.68 E-value=0.011 Score=48.09 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCCCHHHHHHHHHhhcc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTK 110 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L----p~KTvrDVAlR~rwm~~ 110 (255)
....||.||..+|-++..+|.. -+|.+||..+ +++|-.||--|.|=|.+
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~----G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGT----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGG----GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 4468999999999999999963 4899999995 89999998888887776
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.07 E-value=0.048 Score=50.39 Aligned_cols=39 Identities=31% Similarity=0.456 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHH
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVA 102 (255)
.+||..|-..|..|+.+|..+. |.+||+.+++||+.+|.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~----~~~IA~ev~~Kt~eEV~ 149 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDD----IDNIAKDVEGKTPEEVI 149 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC----HHHHTTSSTTCCHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHH----HHHHHHHhcCCCHHHHH
Confidence 4799999999999999998754 89999999999999994
No 50
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.05 E-value=0.49 Score=34.50 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH--HcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAK--QLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~--~Lp~KTvrDVAlR~rwm~~k 111 (255)
....||.|....|.+++..+..+.. ...+|.. .+++.|...|+.+.|.+.-+
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~A--tPk~Il~~M~v~gLT~~~VkSHLQKYR~~ 59 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERA--VPKKILDLMNVDKLTRENVASHLQKFRVA 59 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTC--CHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCC--CcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999986631 2333433 36789999999999987643
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.35 E-value=0.26 Score=41.52 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH--HcCCCCHHHHHH
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK--QLKDKTVRDVAL 103 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~--~Lp~KTvrDVAl 103 (255)
...||..|...|..++.+|..-. .||..|+. .|.+||..||--
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~--~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPL--ERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGG--GCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCch--hHHHHHHHHhccCCCCHHHHHH
Confidence 36799999999999999998532 69999996 499999998864
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=86.99 E-value=0.9 Score=35.39 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-----CCCHHHHHHHHHhhcccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-----DKTVRDVALRCRWMTKKE 112 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-----~KTvrDVAlR~rwm~~kE 112 (255)
.+||.||-.-|=++..+|. .||+-|++... ++||.|+--|+--+.++-
T Consensus 31 ~~WT~eETd~LfdLc~~fd-----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l 83 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999996 59999999874 799999999987666553
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=83.54 E-value=1.2 Score=42.19 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CCCHHHHH
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVA 102 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp-~KTvrDVA 102 (255)
.+||.-|-..|-.|+.+|..+. |.+||+.+. +||+.||.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d----~~~IA~ev~~~Kt~eEV~ 163 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNS----IQAIARELAPGKTLEEVR 163 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTC----HHHHHSSCCCSSSHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhH----HHHHHHHHccCCCHHHHH
Confidence 4799999999999999999754 789999998 99999998
No 54
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=78.08 E-value=4.4 Score=28.42 Aligned_cols=49 Identities=10% Similarity=0.249 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcCC----chhhHHHHHHH-HcCCCCHHHHHHHHHhhc
Q 025253 59 STEWTPEEQSILEDLLAKYASD----SAVNRYAKIAK-QLKDKTVRDVALRCRWMT 109 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e----~~~~Ry~KIA~-~Lp~KTvrDVAlR~rwm~ 109 (255)
.+.+|.||..+|-+-+.+|... ..-.=|..+|. .+|+.|-.-. |.||+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSw--RdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSL--KDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHH--HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHH--HHHHHH
Confidence 4679999999999999999643 24578999999 8999998754 555543
No 55
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.85 E-value=23 Score=25.29 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=38.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 55 NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 55 ~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.-...+.+|.++..+||.....-+ .+....-..||..|. -|.+.|-. |+..+
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~-L~~~qV~v---WFqNR 68 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESLG-LSQLQVKT---WYQNR 68 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC-CCHHHeee---ccHHH
Confidence 344568899999999999987633 344556678999997 88888864 76654
No 56
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=65.35 E-value=14 Score=26.22 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
-...+.+|.+...+||.....- ..+....-..||..|. -|.+.|-. |+..+
T Consensus 18 rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l~-l~~~qV~~---WFqNr 68 (80)
T 2da3_A 18 KRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEVG-LKKRVVQV---WFQNT 68 (80)
T ss_dssp TTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHHT-SCHHHHHH---HHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHC-cCHHHhHH---HhHHH
Confidence 3456788999999999988653 3344555678999996 88888754 77654
No 57
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=64.44 E-value=38 Score=24.52 Aligned_cols=51 Identities=10% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhh---cCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 57 GISTEWTPEEQSILEDLLAKY---ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky---~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...+..|.+....||....+. ...+....-..||..|. -|.+.|-. |+.+.
T Consensus 19 R~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lg-L~~~~Vkv---WFqNr 72 (80)
T 1wh5_A 19 RHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETG-VPRQVLKV---WLHNN 72 (80)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSC-CCHHHHHH---HHHHH
T ss_pred CCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhC-CCcccccC---Ccccc
Confidence 356789999999999988772 22334455678999996 88888765 77654
No 58
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=61.93 E-value=8.8 Score=28.01 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcCC-----chhhHHHHHHHHcC----CCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASD-----SAVNRYAKIAKQLK----DKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e-----~~~~Ry~KIA~~Lp----~KTvrDVAlR~rwm~~k 111 (255)
...||.+|-.+|-++....... ..-..|..||..|. ++|+.+|--|.+-|.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999998887543221 24458999999876 78998888888777654
No 59
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=60.30 E-value=11 Score=28.57 Aligned_cols=52 Identities=19% Similarity=0.440 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCc-----------------hhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDS-----------------AVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~-----------------~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...|+++=-..|.++|..|+... -+.+|+++.. -.-+|-++|+.+++-|.+.
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~t-Gk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT-GKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHH-SCCCCSHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHH-cccCCccchhHHHHHHHHH
Confidence 35799998999999999999641 2456777764 4568999999999988765
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=59.22 E-value=20 Score=33.00 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=42.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHH------------HHcCCCCHHHHHHHHHhhcc
Q 025253 56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIA------------KQLKDKTVRDVALRCRWMTK 110 (255)
Q Consensus 56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA------------~~Lp~KTvrDVAlR~rwm~~ 110 (255)
+...-.||.||.+.|--+|.+|.-+.. .-|.+|- -.+-.+|+-+|+.||.-+-.
T Consensus 209 ~~k~k~yteeEDRfLL~~l~k~G~~~~-g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 209 NNKGKNYTEIEDRFLVCMLHKLGFDKE-NVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHHCTTST-THHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 334568999999999999999998641 3466664 24668999999999999873
No 61
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=56.63 E-value=54 Score=23.80 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHHHHHHHhhh----cCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKY----ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky----~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+|| .+..- ...+...+-..||..|. -+.+.|-. |+.+.
T Consensus 20 ~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lg-L~e~qVkv---WFqNr 72 (80)
T 1wh7_A 20 FRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETG-VRRQVLKI---WMHNN 72 (80)
T ss_dssp CCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSC-CCHHHHHH---HHHTT
T ss_pred CCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhC-cCcCcccc---ccccc
Confidence 45789999999999 67660 22233445578999996 78887755 87765
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.97 E-value=36 Score=25.01 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 62 WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 62 WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.|.++..+||....+- ..+....-..||..|. -|.+.|-. |+.+.
T Consensus 20 ~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~-l~~~qV~v---WFqNR 64 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKS-SFPTQAELDRLRVETK-LSRREIDS---WFSER 64 (89)
T ss_dssp CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCHHHHHHHHHHHccC-CCCCHHHHHHHHHHhC-CCHHhccH---hhHhH
Confidence 6999999999998763 3344455578999997 88888854 77654
No 63
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.56 E-value=78 Score=23.68 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..|.+...+||..... ...+...+-..||..|. -|.++|-. |+.+.
T Consensus 17 ~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~lg-Lte~qVkv---WFqNR 62 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN-SSVLTDEELNRLRAQTK-LTRREIDA---WFTEK 62 (89)
T ss_dssp CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHTC-CCHHHHHH---HHHHH
T ss_pred cCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhC-cChHHCee---ccccc
Confidence 6799999999999865 34455566778999998 89999976 87765
No 64
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=40.03 E-value=80 Score=21.96 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+.+|.+...+||....++...+....-..||..|. -|.+.|-. |+...
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~-l~~~qV~~---WFqNR 54 (73)
T 2hi3_A 5 TVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG-LTEEQTQK---WFKQR 54 (73)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHT-SCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHH---HHHHH
Confidence 3567899999999999987555555556678999997 88888863 77654
No 65
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=39.26 E-value=58 Score=23.50 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHhhh--cCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKY--ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky--~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+||+.+..| ...+....-..||..+. -|.++|-. |+...
T Consensus 10 ~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g-Ls~~qV~~---WFqNr 61 (83)
T 2dmn_A 10 RKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN-LSLLQISN---WFINA 61 (83)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC-cCHHHhhH---Hhhhh
Confidence 44668999999999999765 33344455567899887 89999976 77655
No 66
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=38.02 E-value=85 Score=21.69 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+||....+....+....-..||..|. -|.+.|-. |+..+
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNR 53 (72)
T 1uhs_A 4 GAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG-LTEEQTQK---WFKQR 53 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHC-cCHHHhhH---HhHHH
Confidence 3467899999999999976555555556678999997 88888864 76654
No 67
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=35.79 E-value=84 Score=20.85 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+.+|.+...+||.....- ..+....-..||..|+ -|.+.|-. |+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~-l~~~qV~~---WFqNr 50 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKIG-LTEARIQV---WFQNR 50 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT-SCHHHHHH---HHHHH
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHC-cCHHHHHH---Hhhhh
Confidence 34678999999999998663 3444555678999996 88888863 66544
No 68
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=35.40 E-value=1.2e+02 Score=21.48 Aligned_cols=50 Identities=12% Similarity=0.329 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...+.+|.+...+||.....- ..+....-..||..|+ -|.+.|- .|+...
T Consensus 24 r~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~-l~~~qV~---vWFqNR 73 (84)
T 2kt0_A 24 KTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNILN-LSYKQVK---TWFQNQ 73 (84)
T ss_dssp CCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHTT-CCHHHHH---HHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcC-CCHHHHH---HHHHHH
Confidence 456789999999999998653 3344555678999997 8888885 477654
No 69
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=33.55 E-value=1.2e+02 Score=21.17 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=38.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 53 RHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 53 K~~~~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
+..-...+..|.+...+||.....- ..+....-..||..|+ -|.+.|-. |+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~-l~~~qV~v---WFqNR 64 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLLN-LTERQVKI---WFQNR 64 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHC-cCHHHHHH---HHHHH
Confidence 3334456789999999999998653 3444555678999997 88888853 66654
No 70
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=33.28 E-value=67 Score=21.64 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.+..|.+...+||.....- ..++...-..||..|+ -|.+.|-. |+...
T Consensus 7 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNr 54 (63)
T 2h1k_A 7 RTAYTRAQLLELEKEFLFN-KYISRPRRVELAVMLN-LTERHIKI---WFQNR 54 (63)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhC-cCHHHhhH---HHHhh
Confidence 4678999999999998653 3444555678999997 88888863 66654
No 71
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.74 E-value=86 Score=22.96 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=28.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK 94 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp 94 (255)
...+.||.++..+||..+.. ...+....-..||..|.
T Consensus 9 r~R~~ft~~ql~~Le~~F~~-~~yP~~~~r~~lA~~l~ 45 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNE-NQYPDEAKREEIANACN 45 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHC
Confidence 45678999999999999887 44455566678888875
No 72
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=30.84 E-value=46 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHH
Q 025253 177 GDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIM 217 (255)
Q Consensus 177 ~~LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~IL 217 (255)
..-.|+|.++|.||-.-+.+++ |+..|+-+|-..-+
T Consensus 65 ~~kv~en~~~L~QIQ~ei~s~r-----d~hkR~~E~QkEQ~ 100 (115)
T 1ezj_A 65 ARKVDENKQLLKQIQESVESFR-----DIYKRFSEYQKEQN 100 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHH
Confidence 3457899999999999999888 88888888765433
No 73
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=30.74 E-value=1.5e+02 Score=21.63 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
....|.+...+||..+.. ...+.......||..++ -|.++|-. |+...
T Consensus 7 r~kfT~~Ql~~Le~~F~~-~~YPs~~er~~LA~~tg-Lte~qIkv---WFqNr 54 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQ-CQWARREDYQKLEQITG-LPRPEIIQ---WFGDT 54 (76)
T ss_dssp CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHTC-CCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHC-cCHHHhhH---HhHhh
Confidence 345899999999999984 34455677888999998 89998875 77654
No 74
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.22 E-value=1.5e+02 Score=20.41 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
+..+..|.+...+||....+- ..+.......||..|+ -+.+.|- .|+..+
T Consensus 8 ~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l~-l~~~qV~---~WFqNr 57 (74)
T 2ly9_A 8 GIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKITG-LTKGEIK---KWFSDT 57 (74)
T ss_dssp CTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHC-CCHHHHH---HHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC-cCHHHee---eCChhH
Confidence 356789999999999998753 2344556678999986 8888885 376654
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=27.14 E-value=1.1e+02 Score=27.35 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH--HcCCCCHHH-------HHHHHHhhcccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK--QLKDKTVRD-------VALRCRWMTKKE 112 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~--~Lp~KTvrD-------VAlR~rwm~~kE 112 (255)
...||.-|.+.|-.++.+|..-. .||..|+. .|++|...+ +..+|+...+-+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~--~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~av~e~ 63 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLK--EILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEE 63 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCT--TCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999865 48988874 588888655 456676665433
No 76
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=27.12 E-value=1.4e+02 Score=21.83 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+||..+.+- ..+.......||..|+ -|.+.|- .|+..+
T Consensus 28 ~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~-L~~~qV~---vWFqNR 76 (96)
T 3nar_A 28 KICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKESG-LARTDIV---SWFGDT 76 (96)
T ss_dssp CSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHC-CCHHHHH---HHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC-CCHHHee---ecchhh
Confidence 45778999999999998752 2344556678999986 8888886 366544
No 77
>3o6q_A Stage II sporulation protein SA; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=27.03 E-value=40 Score=28.38 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcc
Q 025253 175 ITGDILEQNAQMFNQISANFGTFQ 198 (255)
Q Consensus 175 ~~~~LLEqNaqllnQI~aNl~t~q 198 (255)
-|.+|||+|.++|.--..-+.+||
T Consensus 7 dT~~lle~Nn~ll~s~~~klKt~~ 30 (157)
T 3o6q_A 7 DTREILEENNEMLHMYLNRLKTYQ 30 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHH
Confidence 489999999999988877777777
No 78
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.90 E-value=1.4e+02 Score=20.29 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+.+|.+...+||..+.. ...+....-..||..|. -|.+.|-. |+...
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNr 58 (70)
T 2dmu_A 10 HRTIFTDEQLEALENLFQE-TKYPDVGTREQLARKVH-LREEKVEV---WFKNR 58 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHC-CCHHHeeh---ccccc
Confidence 4577999999999999876 33444556678999997 88888874 77654
No 79
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=26.58 E-value=45 Score=24.57 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhcc
Q 025253 175 ITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLND 222 (255)
Q Consensus 175 ~~~~LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~ILn~m~~ 222 (255)
.+.+++.+|=++|.++-..|. +.|..||..++.|=...|.-|++
T Consensus 17 qlR~~vqqNP~lL~~lLqqL~----~~NPqL~q~I~~n~e~Fl~ll~e 60 (72)
T 1pve_A 17 QMRQIIQQNPSLLPALLQQIG----RENPQLLQQISQHQEHFIQMLNE 60 (72)
T ss_dssp THHHHHTTCGGGHHHHHHHHH----TTCHHHHHHHHTTHHHHHHHHHS
T ss_pred HHHHHHHHCHHHHHHHHHHHH----hHCHHHHHHHHHCHHHHHHHHcC
Confidence 478999999999999999995 59999999999998888888864
No 80
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=25.63 E-value=1.4e+02 Score=26.74 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=22.4
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 84 NRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 84 ~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.+|..||...|..|---+=-|++.+..+
T Consensus 172 ~~fk~ia~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 172 EFFKHFAEEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp THHHHHHHHTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHCCCCChhhHHHHHHHHHhh
Confidence 3899999999999977777777765543
No 81
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=25.48 E-value=79 Score=22.43 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhcc
Q 025253 175 ITGDILEQNAQMFNQISANFGTFQIRDNIDLLCKARENILSIMNDLND 222 (255)
Q Consensus 175 ~~~~LLEqNaqllnQI~aNl~t~q~qeNidLf~~~RdNI~~ILn~m~~ 222 (255)
.+.+++.+|=++|..+-..|. +.|..|+..++.|=...|.-+++
T Consensus 15 ~lR~~vq~NP~~L~~lLqql~----~~nP~l~~~I~~n~e~Fl~ll~e 58 (61)
T 2f4m_B 15 QMRQIIQQNPSLLPALLQQIG----RENPQLLQQISQHQEHFIQMLNE 58 (61)
T ss_dssp HHHHHHHHCGGGHHHHHHHHH----HHCHHHHHHHHHSHHHHHHHHTS
T ss_pred HHHHHHHHCHHHHHHHHHHHH----hHCHHHHHHHHHCHHHHHHHHcc
Confidence 467899999999999999885 49999999999998888887764
No 82
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=24.62 E-value=1.7e+02 Score=19.87 Aligned_cols=49 Identities=10% Similarity=0.207 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+||.....- ..+....-..||..|. -|.+.|-. |+...
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNr 58 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKSG-LPQKVIKH---WFRNT 58 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHhC-CCHHHHHH---Hhhhh
Confidence 45779999999999998542 2233345568999997 88888864 77654
No 83
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=24.16 E-value=87 Score=22.15 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 65 EEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 65 eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
+....||.....+...+...+-..||..|. -|.++|-. |+...
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~-LterQVkv---WFqNR 52 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLD-WDVRSIQR---WFRQR 52 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHC-SCHHHHHH---HHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHHH---HHHHH
Confidence 357899999965555544455667999998 99999976 77654
No 84
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.35 E-value=1.2e+02 Score=23.58 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL 93 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~L 93 (255)
...+.||.+.+.+||....+=+ .+...+-..||..|
T Consensus 8 r~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~l 43 (102)
T 2da6_A 8 RNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEEC 43 (102)
T ss_dssp CCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Confidence 3568899999999999976543 45566777899998
No 85
>4g9s_A Lysozyme G, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Salmo salar} PDB: 3mgw_A
Probab=23.24 E-value=33 Score=28.64 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCC----CHHHHHHHHHhhcc
Q 025253 61 EWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDK----TVRDVALRCRWMTK 110 (255)
Q Consensus 61 ~WT~eEq~~LE~~L~ky~~e~-~~~Ry~KIA~~Lp~K----TvrDVAlR~rwm~~ 110 (255)
.|+.+.+ |.-+|+-|-..+ .|.+|..|- |.. =|+||..|.+|+.+
T Consensus 135 ~~~~~g~--~~~alAAYNaG~g~V~~~~~i~---~~~et~dYv~~Vlara~~yk~ 184 (187)
T 4g9s_A 135 VWPKEHQ--LKGGISAYNAGDKNVRTYERMD---VGTTGGDYSNDVVARSQWFKS 184 (187)
T ss_dssp TSCHHHH--HHHHHHHHHHCGGGCCSSSCTT---TTSGGGCHHHHHHHHHHHHHH
T ss_pred CCCcCcc--HHHHHHHHccCchhHHhccCCC---CCchhhhHHHHHHHHHHHHHH
Confidence 3444433 344777787775 777885432 222 28899999999864
No 86
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.67 E-value=1.9e+02 Score=19.73 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+||.....- ..+....-..||..|. -|.+.|- .|+...
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~-l~~~qV~---~WFqNr 58 (70)
T 2djn_A 10 PRTIYSSFQLAALQRRFQKT-QYLALPERAELAASLG-LTQTQVK---IWFQNK 58 (70)
T ss_dssp SSCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHSS-CCHHHHH---HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHhC-CCHHHHH---HHHHHH
Confidence 35778999999999988653 3344556678999997 8888886 377654
No 87
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=22.48 E-value=1.8e+02 Score=19.50 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+||.....- ..++...-..||..|+ -|.+.|-. |+...
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~-l~~~qV~~---WFqNr 54 (66)
T 1bw5_A 6 VRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMTG-LSPRVIRV---WFQNK 54 (66)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT-SCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHC-cCHHHHHH---HhHHH
Confidence 34678999999999998763 3444455678999987 88888864 77654
No 88
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=22.32 E-value=1.7e+02 Score=19.18 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHhhh--cCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKY--ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky--~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
+..|.+...+||..+... ...++...-..||..++ -|.++|-. |+...
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~g-l~~~qV~~---WFqNr 52 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS-LSRIQIKN---WVSNR 52 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHC-cCHHHHHH---HHHHH
Confidence 467899999999999872 33344445567999987 88888853 66544
No 89
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.66 E-value=42 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.594 Sum_probs=19.9
Q ss_pred HHHHHhccc---hhhhhcCCCCccccch
Q 025253 215 SIMNDLNDM---PEIMKQMPPLPVKVND 239 (255)
Q Consensus 215 ~ILn~m~~m---pgiM~qMPPLPVklNe 239 (255)
-++++|+.. +.+.++||.||.-||.
T Consensus 11 ql~n~mrn~PIP~~LL~kIPnLPpgVnT 38 (81)
T 2ko4_A 11 QLVNQMKVAPIPKQLLQRIPNIPPNINT 38 (81)
T ss_dssp HHHGGGGSCBCCHHHHTTSSSCCTTTCB
T ss_pred HHHHHHhcCCCCHHHHhhCCCCCCCcch
Confidence 357778754 5899999999998884
No 90
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=2.1e+02 Score=19.87 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.+..|.+...+||....+-+ .+....-..||..|. -|.+.|-. |+..+
T Consensus 12 R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~-l~~~qV~~---WFqNr 59 (76)
T 2dn0_A 12 KNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVTG-LSTREVRK---WFSDR 59 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC-CChHHhhH---HhHHH
Confidence 57789999999999986533 333455678999997 88888854 77654
No 91
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=21.27 E-value=1.9e+02 Score=19.42 Aligned_cols=48 Identities=15% Similarity=0.430 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.+.+|.+...+||..... ...++...-..||..|+ -|.+.|-. |+...
T Consensus 5 Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l~-l~~~qV~~---WFqNr 52 (67)
T 2k40_A 5 RTAFTQNQIEVLENVFRV-NCYPGIDILEDLAQKLN-LELDRIQI---WFQNR 52 (67)
T ss_dssp SCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHC-cCHHHhhH---hhHhH
Confidence 467899999999999865 33344556678999997 88888864 76654
No 92
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.23 E-value=1.5e+02 Score=20.76 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 60 ~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..-|.++..+||....+-+ .+....-..||..|. -|.+.|-. |+..+
T Consensus 12 ~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~-l~~~qV~~---WFqNR 58 (75)
T 2da5_A 12 KERAPEQLRALESSFAQNP-LPLDEELDRLRSETK-MTRREIDS---WFSER 58 (75)
T ss_dssp CCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred ccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC-CCHHHhhH---hhHHH
Confidence 3469999999999886533 344455567999997 88888875 87765
No 93
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.02 E-value=2e+02 Score=19.46 Aligned_cols=49 Identities=14% Similarity=0.358 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+||.....- ..+....-..||..|. -|.+.|-. |+..+
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNr 58 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLLN-LPTRVIVV---WFQNA 58 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHSC-CCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhC-CCHHHhHH---hhHhh
Confidence 45779999999999998663 3444556678999997 88888854 66654
No 94
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=21.00 E-value=1.9e+02 Score=20.75 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=18.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhhcC
Q 025253 52 LRHNSGISTEWTPEEQSILEDLLAKYAS 79 (255)
Q Consensus 52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~ 79 (255)
--+...+..++|.+| |.+.+.+|..
T Consensus 27 ~l~V~nLp~~~t~~~---l~~~F~~~G~ 51 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQD---LLQMFMPFGN 51 (115)
T ss_dssp CEEEESCCSSCCHHH---HHHHHGGGSC
T ss_pred EEEEeCCCCCCCHHH---HHHHHHhcCC
Confidence 346677888888877 6677888864
No 95
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=20.92 E-value=1.9e+02 Score=19.15 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 59 ~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
.+.+|.+...+||.....- ..++...-..||..|+ -|.+.|- .|+.+.
T Consensus 7 Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~-l~~~qV~---~WFqNr 54 (62)
T 2vi6_A 7 RTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSILN-LSYKQVK---TWFQNQ 54 (62)
T ss_dssp -CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT-CCHHHHH---HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhC-CCHHHhh---HHhHHh
Confidence 4678999999999998653 3444455578999997 8888885 377654
No 96
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.80 E-value=2.1e+02 Score=19.50 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+.+|.++..+||.....- ..+....-..||..|. -|.+.|-. |+..+
T Consensus 10 ~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~-l~~~qV~~---WFqNr 58 (70)
T 2e1o_A 10 GQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKMLQ-LSERQVKT---WFQNR 58 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTT-CCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHC-CCHHHhhH---hhHhh
Confidence 34679999999999998653 3344555678999997 88888863 66654
No 97
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.74 E-value=2.1e+02 Score=19.57 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHhhh--cCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 58 ISTEWTPEEQSILEDLLAKY--ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 58 ~~~~WT~eEq~~LE~~L~ky--~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
..+..|.+...+||..+..+ ...+....-..||..+. -|.++|-. |+...
T Consensus 10 ~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~-L~~~qV~~---WFqNr 61 (73)
T 1x2n_A 10 KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN-LTLLQVNN---WFINA 61 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC-cCHHHHHH---HhHHH
Confidence 34679999999999999652 33343445567888886 88888864 66554
No 98
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.58 E-value=2.2e+02 Score=19.84 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCCCHHHHHHHHHhhccc
Q 025253 57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111 (255)
Q Consensus 57 ~~~~~WT~eEq~~LE~~L~ky~~e~~~~Ry~KIA~~Lp~KTvrDVAlR~rwm~~k 111 (255)
...+.+|.+...+||.....-+ .+....-..||..|. -|.+.|- .|+..+
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~-l~~~qV~---~WFqNR 58 (80)
T 2dms_A 9 RERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKIN-LPESRVQ---VWFKNR 58 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT-CCHHHHH---HHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC-cCHHHhh---hhhHHH
Confidence 3457899999999999987633 444566678999997 8888885 377654
Done!