BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025254
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V+++G G SGL+ L + YVIL+ E W+ +++ L L + +P
Sbjct: 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWHSLHLFSPAGWSSIPG 62
Query: 68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127
P P+S + +RA+ + +L Y + + P +R R + + E + +
Sbjct: 63 WPMPASQGPYPARAEVLAYLAQYEQKYAL-PVLRPIRVQRVSHFGERLRV-------VAR 114
Query: 128 PGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGK 187
GR+ + R ++ A+G +TP+ +GL SF G +HS Y P+ G
Sbjct: 115 DGRQ----WLARAVISATGTWGEAYTPEYQGLESFA------GIQLHSAHYSTPAPFAGM 164
Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLW----------RFEQVWDPQAQGR 236
V ++G GNSG +I +++ A T + PA L R + W Q +GR
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGR 223
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 33/222 (14%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL 68
+V++VGAG +GL Q + E + +W Y R C + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGAR-------CDVESI 75
Query: 69 PFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
+ S+ + ++ + + +L+H F++ IR+ V SA DE
Sbjct: 76 DYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLR 135
Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
W V+ G E+ S RFLVVA+G +N TP GL F TG+++H+ +
Sbjct: 136 WTVRTDR----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTAR 181
Query: 178 Y-KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
+ +G + GK V V+G+G+SG++ +A A + + RS
Sbjct: 182 WPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 33/222 (14%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL 68
+V++VGAG +GL Q + E + +W Y R C + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGAR-------CDVESI 75
Query: 69 PFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
+ S+ + ++ + + +L+H F++ IR+ V SA DE
Sbjct: 76 DYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLR 135
Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
W V+ G E+ S RFLVVA+G +N TP GL F TG+++H+ +
Sbjct: 136 WTVRTDR----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTAR 181
Query: 178 Y-KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
+ +G + GK V V+G+G+SG++ +A A + + RS
Sbjct: 182 WPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 33/222 (14%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHL 68
+V++VGAG +GL Q + E + +W Y R C + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGAR-------CDVESI 75
Query: 69 PFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
+ S+ + ++ + + +L+H F++ IR+ V SA DE
Sbjct: 76 DYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLR 135
Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
W V+ G E+ S RFLVVA+G +N TP GL F TG+++H+ +
Sbjct: 136 WTVRTDR----GDEV----SARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTAR 181
Query: 178 Y-KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218
+ +G + GK V V+G+G+SG++ +A A + + RS
Sbjct: 182 WPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V++VGAG SGL L ++E +W Y R C +
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68 LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
+ + S+ + S+ + + +++ F++ I + +V +A++DEATN
Sbjct: 70 IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
W V ++ G I R+L++ASG+ + P P+ GL F + TG H
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V++VGAG SGL L ++E +W Y R C +
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68 LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
+ + S+ + S+ + + +++ F++ I + +V +A++DEATN
Sbjct: 70 IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
W V ++ G I R+L++ASG+ + P P+ GL F + TG H
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V++VGAG SGL L ++E +W Y R C +
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CDIES 69
Query: 68 LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
+ + S+ + S+ + + +++ F++ I + +V +A++DEATN
Sbjct: 70 IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
W V ++ G I R+L++ASG+ + P P+ GL F + TG H
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V++VGAG SGL L ++E +W Y R C +
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGAR-------CAIES 69
Query: 68 LPFPSSY-----------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN 116
+ + S+ + S+ + + +++ F++ I + +V +A++DEATN
Sbjct: 70 IEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN 129
Query: 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHST 176
W V ++ G I R+L++ASG+ + P P+ GL F + TG H
Sbjct: 130 TWTVDTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP 181
Query: 177 QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 25/229 (10%)
Query: 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
+ ++ ++ +++GAG +G+ A ++ + + +E W Y RL
Sbjct: 4 RAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESY 63
Query: 62 ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM 117
F +P F S+ + + +++ ++ R+ V +A Y E +
Sbjct: 64 AYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRL 123
Query: 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQ 177
W V N EE + RFL+ A+G + PDI+G+ SF GE HS++
Sbjct: 124 WEVTLDN--------EEVVTCRFLISATGPLSASRMPDIKGIDSF------KGESFHSSR 169
Query: 178 Y---KNGKPYG----GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+ G P G GK V V+G+G +G++I A A + + R+P
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP 218
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136
++++ + +E+L+ V F++ ++ V SA Y + N+W V + E Y
Sbjct: 116 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDH--------GEVY 167
Query: 137 SGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGN 196
+++V A G + P++ GL +F GE IH+ + GK G+ V V+G+G+
Sbjct: 168 RAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGKSLAGRRVGVIGTGS 221
Query: 197 SGMEIALDLANHAAKTSLVVRSP 219
+G ++ LA ++ VR+P
Sbjct: 222 TGQQVITSLAPEVEHLTVFVRTP 244
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136
++++ + +E+L+ V F++ ++ V SA Y + N+W V + E Y
Sbjct: 83 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDH--------GEVY 134
Query: 137 SGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGN 196
+++V A G + P++ GL +F GE IH+ + GK G+ V V+G+G+
Sbjct: 135 RAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGKSLAGRRVGVIGTGS 188
Query: 197 SGMEIALDLANHAAKTSLVVRSP 219
+G ++ LA ++ VR+P
Sbjct: 189 TGQQVITSLAPEVEHLTVFVRTP 211
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 13/160 (8%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 95 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
EE+ ++V +G + P+ P+ G F G ++H+ +++ + K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKFG------GRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAKTSL-VVRSPACLWRFEQVWD 230
VGS +S +I + AK + R+ +++ + WD
Sbjct: 203 VGSSSSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWD 242
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 95 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
EE+ ++V +G + P+ P+ G F G ++H+ +++ + K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKFG------GRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAKTSL-VVRSPACLWRFEQVWD 230
VGS S +I + AK + R+ +++ + WD
Sbjct: 203 VGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWD 242
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V + +
Sbjct: 95 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIY 151
Query: 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLV 191
EE+ ++V +G + P+ P+ G F G ++H+ +++ + K VL+
Sbjct: 152 SEEF---DYVVCCTGHFSTPYVPEFEGFEKFG------GRILHAHDFRDALEFKDKTVLL 202
Query: 192 VGSGNSGMEIALDLANHAAKTSL-VVRSPACLWRFEQVWD 230
VGS S +I + AK + R+ +++ + WD
Sbjct: 203 VGSSYSAEDIGSQCYKYGAKKLISCYRTAPXGYKWPENWD 242
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V +
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HT 151
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
+ YS F +V +G + P+ P+ G F G ++H+ +++ + K V
Sbjct: 152 TDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFG------GRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAKTSL-VVRSPACLWRFEQVWD 230
L+VGS S +I + AK + R+ +++ + WD
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWD 247
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V +
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HT 151
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
+ YS F +V +G + P+ P+ G F G ++H+ +++ + K V
Sbjct: 152 TDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFG------GRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAKTSL-VVRSPACLWRFEQVWD 230
L+VGS S +I + AK + R+ +++ + WD
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWD 247
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V +
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HT 151
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
+ YS F +V +G + P+ P+ G F G ++H+ +++ + K V
Sbjct: 152 TDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFG------GRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAKTSL-VVRSPACLWRFEQVWD 230
L+VGS S +I + AK + R+ +++ + WD
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWD 247
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131
+SYP R +++ V + IR+ +V ++E + + V +
Sbjct: 100 ASYP---PREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HT 151
Query: 132 IEEYYSGRF--LVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNV 189
+ YS F +V +G + P+ P+ G F G ++H+ +++ + K V
Sbjct: 152 TDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFG------GRILHAHDFRDALEFKDKTV 205
Query: 190 LVVGSGNSGMEIALDLANHAAKTSL-VVRSPACLWRFEQVWD 230
L+VGS S +I + AK + R+ +++ + WD
Sbjct: 206 LLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWD 247
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIA 202
+ +G P+ P+I+GL + + G+ V+HS+ ++ + + G++VLVVG +S ++
Sbjct: 171 ICNGHYEVPYIPNIKGLDEYAKAVPGS--VLHSSLFREPELFVGESVLVVGGASSANDLV 228
Query: 203 LDL---ANHAAKTSLV 215
L A H SL+
Sbjct: 229 RHLTPVAKHPIYQSLL 244
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIA 202
+ +G P+ P+I+GL + + G+ V+HS+ ++ + + G++VLVVG +S ++
Sbjct: 173 ICNGHYEVPYIPNIKGLDEYAKAVPGS--VLHSSLFREPELFVGESVLVVGGASSANDLV 230
Query: 203 LDL---ANHAAKTSLV 215
L A H SL+
Sbjct: 231 RHLTPVAKHPIYQSLL 246
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+G + GK V V+G GNSG+E A+DLA +L+ +P
Sbjct: 349 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 388
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+G + GK V V+G GNSG+E A+DLA +L+ +P
Sbjct: 138 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 177
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 179 KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
K+ + GK VL+VG G+S ++ AL+L + A + +L+ R P
Sbjct: 145 KSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP 185
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 8 VEVIMVGAGTSGLATAACLSLQSIPYVILER 38
V+V++VGAG GL+TA L+ Q + +++ER
Sbjct: 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPAC 221
+VLVVG+G G+ A+ LA + +V R P
Sbjct: 7 DVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL 40
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 34/224 (15%)
Query: 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD-RLRLHLAKQFCQL 65
G + ++V A G C+++ +P ++ W Y+ D R+ A ++
Sbjct: 34 GAKTLLVEAKALG---GTCVNVGCVPKKVM---------W--YASDLATRVSHANEYGLY 79
Query: 66 PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN--MWNVKAS 123
+LP + F + +F + D YV N I YQ+++E D +N +
Sbjct: 80 QNLPLDKEHLTF-NWPEFKQKRDAYVHRLN---GI-YQKNLEKEKVDVVFGWARFNKDGN 134
Query: 124 NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKP 183
+ E YS ++VA+G F +I G + + G + +P
Sbjct: 135 VEVQKRDNTTEVYSANHILVATGGKA-IFPENIPGF-ELGTDSDGFFRL-------EEQP 185
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227
K V+VVG+G G+E+A ++T LV+R L +F++
Sbjct: 186 ---KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDE 226
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ IE + +++ N G ++R ++ V +Y + +KA+N + G+E + YS
Sbjct: 120 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGKE--KIYSAE 175
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 176 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 223
Query: 200 EIALDLANHAAKTSLVVRSPACLWRFEQ 227
E A LA +++VRS L F+Q
Sbjct: 224 ECAGFLAGIGLDVTVMVRS-ILLRGFDQ 250
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ IE + +++ N G ++R ++ V +Y + +KA+N + G+E + YS
Sbjct: 114 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGKE--KIYSAE 169
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 170 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 217
Query: 200 EIALDLANHAAKTSLVVRSPACLWRFEQ 227
E A LA +++VRS L F+Q
Sbjct: 218 ECAGFLAGIGLDVTVMVRS-ILLRGFDQ 244
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ IE + +++ N G ++R ++ V +Y + +KA+N + G+E + YS
Sbjct: 120 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGKE--KIYSAE 175
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 176 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 223
Query: 200 EIALDLANHAAKTSLVVRSPACLWRFEQ 227
E A LA +++VRS L F+Q
Sbjct: 224 ECAGFLAGIGLDVTVMVRS-ILLRGFDQ 250
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ IE + +++ N G ++R ++ V +Y + +KA+N + G+E + YS
Sbjct: 122 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGKE--KIYSAE 177
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 178 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 225
Query: 200 EIALDLANHAAKTSLVVRSPACLWRFEQ 227
E A LA +++VRS L F+Q
Sbjct: 226 ECAGFLAGIGLDVTVMVRS-ILLRGFDQ 252
>pdb|2CUL|A Chain A, Crystal Structure Of The Gida-Related Protein From Thermus
Thermophilus Hb8
Length = 232
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWR--------------FEQVWDPQA 233
VL+VG+G SG E A LA + L+ +S + E+ +DP+
Sbjct: 5 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKD 64
Query: 234 QGRSFFHESCLWKVPGYRCRHL 255
+ FH + + G R HL
Sbjct: 65 ERVWAFHARAKYLLEGLRPLHL 86
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQV 228
+N L++GSG S +A L K S++ RSP L F+++
Sbjct: 119 QNALILGSGGSAKALACGLKKQGLKVSVLNRSPRGLDFFQRL 160
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 130 REIEEYYSG-RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYG--- 185
E+++ + G + L V T PF +I L + +++ +++NGK YG
Sbjct: 46 EELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNT 105
Query: 186 -----------------GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227
K++LV+G+G + + L AK L R+ + Q
Sbjct: 106 DWIGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQ 164
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 130 REIEEYYSG-RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYG--- 185
E+++ + G + L V T PF +I L + +++ +++NGK YG
Sbjct: 52 EELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNT 111
Query: 186 -----------------GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227
K++LV+G+G + + L AK L R+ + Q
Sbjct: 112 DWIGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQ 170
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195
Y R +++A+G F P R L + TG ++ K+ + + GK V++VG G
Sbjct: 118 YRSRAVLIAAG--LGAFEP--RKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGG 172
Query: 196 NSGMEIALDLANHAAKTSLVVR 217
+S ++ + L +AA +LV R
Sbjct: 173 DSALDWTVGLIKNAASVTLVHR 194
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQV-----WDPQAQ 234
+G Y + V V+G GN+ +E AL L+N A++ L+ R +R E++ D
Sbjct: 139 DGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG--FRAEKILIKRLMDKVEN 196
Query: 235 GRSFFHES-CLWKVPG 249
G H + L +V G
Sbjct: 197 GNIILHTNRTLEEVTG 212
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQV-----WDPQAQGRSF 238
Y + V V+G GN+ +E AL L+N A++ L+ R +R E++ D G
Sbjct: 143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG--FRAEKILIKRLMDKVENGNII 200
Query: 239 FHES-CLWKVPG 249
H + L +V G
Sbjct: 201 LHTNRTLEEVTG 212
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQV-----WDPQAQGRSF 238
Y + V V+G GN+ +E AL L+N A++ L+ R +R E++ D G
Sbjct: 143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG--FRAEKILIKRLMDKVENGNII 200
Query: 239 FHES-CLWKVPG 249
H + L +V G
Sbjct: 201 LHTNRTLEEVTG 212
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQV-----WDPQAQGRSF 238
Y + V V+G GN+ +E AL L+N A++ L+ R +R E++ D G
Sbjct: 143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG--FRAEKILIKRLMDKVENGNII 200
Query: 239 FHES-CLWKVPG 249
H + L +V G
Sbjct: 201 LHTNRTLEEVTG 212
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQV-----WDPQAQGRSF 238
Y + V V+G GN+ +E AL L+N A++ L+ R +R E++ D G
Sbjct: 143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG--FRAEKILIKRLMDKVENGNII 200
Query: 239 FHES-CLWKVPG 249
H + L +V G
Sbjct: 201 LHTNRTLEEVTG 212
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V+++G G SGLA A LS I ++LE +
Sbjct: 23 DVVVIGGGISGLAAAKLLSEYKINVLVLEARD 54
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRL 54
+ ++ V ++GAG SGLA A L + + + E E + S D L
Sbjct: 9 KHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGL 60
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195
+ + +++A+G + P I+G + T YKN K V V+G G
Sbjct: 101 FEAKSVIIATGGS--PKRTGIKGESEYWGKGVSTCATCDGFFYKN------KEVAVLGGG 152
Query: 196 NSGMEIALDLANHAAKTSLVVR 217
++ +E A+ LAN K L+ R
Sbjct: 153 DTAVEEAIYLANICKKVYLIHR 174
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40
+V ++GAG SGL L I VILER+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ E + +++ N G ++R ++ V +Y + + A+N + G+E + YS
Sbjct: 100 KMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATN--NKGKE--KVYSAE 155
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 156 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 203
Query: 200 EIALDLANHAAKTSLVVRSPACLWRFEQ 227
E A LA +++VRS L F+Q
Sbjct: 204 ECAGFLAGIGLDVTVMVRS-ILLRGFDQ 230
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 82 QFIEHLDHYVSHFNIG--PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139
+ E + +++ N G ++R ++ V +Y + + A+N + G+E + YS
Sbjct: 100 KMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATN--NKGKE--KVYSAE 155
Query: 140 FLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 156 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 203
Query: 200 EIALDLANHAAKTSLVVRSPACLWRFEQ 227
E A LA +++VRS L F+Q
Sbjct: 204 ECAGFLAGIGLDVTVMVRS-ILLRGFDQ 230
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219
+G + GK V+ +G GNSG A+ ++ + +++ P
Sbjct: 149 DGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,215,757
Number of Sequences: 62578
Number of extensions: 335108
Number of successful extensions: 1288
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 107
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)