Query 025254
Match_columns 255
No_of_seqs 158 out of 2265
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 7.5E-37 1.6E-41 267.5 19.1 209 8-227 2-224 (531)
2 COG2072 TrkA Predicted flavopr 100.0 1.4E-34 3.1E-39 249.2 23.9 210 5-227 6-216 (443)
3 PLN02172 flavin-containing mon 100.0 3.2E-33 6.9E-38 241.7 24.1 202 6-219 9-237 (461)
4 KOG1399 Flavin-containing mono 100.0 1.5E-31 3.3E-36 227.6 19.9 200 7-217 6-217 (448)
5 PF13738 Pyr_redox_3: Pyridine 100.0 5.9E-31 1.3E-35 205.7 14.8 190 11-221 1-202 (203)
6 TIGR01292 TRX_reduct thioredox 99.9 6.8E-23 1.5E-27 169.4 20.2 174 8-219 1-174 (300)
7 COG0492 TrxB Thioredoxin reduc 99.9 1.2E-22 2.6E-27 166.2 18.8 174 7-224 3-180 (305)
8 PRK10262 thioredoxin reductase 99.9 4E-22 8.7E-27 166.5 20.0 176 5-219 4-179 (321)
9 PRK15317 alkyl hydroperoxide r 99.9 6.8E-22 1.5E-26 174.7 20.6 176 5-219 209-384 (517)
10 TIGR03143 AhpF_homolog putativ 99.9 7.3E-22 1.6E-26 175.6 20.2 174 6-219 3-176 (555)
11 COG1249 Lpd Pyruvate/2-oxoglut 99.9 3.2E-22 6.9E-27 171.5 13.2 201 6-234 3-220 (454)
12 TIGR03140 AhpF alkyl hydropero 99.9 4.3E-21 9.4E-26 169.4 20.4 176 5-219 210-385 (515)
13 PF13434 K_oxygenase: L-lysine 99.9 1.3E-22 2.9E-27 169.3 9.9 204 7-227 2-232 (341)
14 PRK05249 soluble pyridine nucl 99.9 7E-21 1.5E-25 166.5 16.0 197 6-227 4-215 (461)
15 PRK06416 dihydrolipoamide dehy 99.9 9.6E-21 2.1E-25 165.7 16.2 193 6-227 3-212 (462)
16 TIGR01421 gluta_reduc_1 glutat 99.9 6.9E-21 1.5E-25 165.6 14.9 188 7-227 2-206 (450)
17 PRK06467 dihydrolipoamide dehy 99.9 9.3E-21 2E-25 165.7 15.8 195 6-227 3-214 (471)
18 PRK06370 mercuric reductase; V 99.9 1.4E-20 2.9E-25 164.6 14.9 190 6-226 4-210 (463)
19 PLN02507 glutathione reductase 99.8 2.6E-20 5.6E-25 163.7 15.9 193 7-226 25-242 (499)
20 PRK07251 pyridine nucleotide-d 99.8 4.7E-20 1E-24 160.2 16.8 188 7-227 3-197 (438)
21 PRK08010 pyridine nucleotide-d 99.8 6.9E-20 1.5E-24 159.3 16.6 188 7-227 3-198 (441)
22 PRK06116 glutathione reductase 99.8 3E-20 6.4E-25 162.0 14.3 186 6-225 3-205 (450)
23 TIGR02053 MerA mercuric reduct 99.8 1.8E-20 3.8E-25 164.0 12.5 191 8-227 1-206 (463)
24 TIGR01424 gluta_reduc_2 glutat 99.8 3.4E-20 7.4E-25 161.3 14.2 188 7-226 2-205 (446)
25 PRK05976 dihydrolipoamide dehy 99.8 5.2E-20 1.1E-24 161.3 15.3 198 6-227 3-220 (472)
26 PRK14694 putative mercuric red 99.8 1.2E-19 2.6E-24 158.8 17.1 193 6-225 5-215 (468)
27 PRK12779 putative bifunctional 99.8 8.6E-20 1.9E-24 169.6 15.5 166 6-224 305-485 (944)
28 PRK14727 putative mercuric red 99.8 1.7E-19 3.6E-24 158.2 16.5 196 4-226 13-226 (479)
29 PTZ00052 thioredoxin reductase 99.8 4E-20 8.7E-25 162.5 11.4 196 6-226 4-220 (499)
30 PRK13748 putative mercuric red 99.8 2.1E-19 4.6E-24 160.8 16.0 192 7-226 98-308 (561)
31 PLN02546 glutathione reductase 99.8 5.4E-20 1.2E-24 162.7 10.9 188 7-226 79-291 (558)
32 PTZ00058 glutathione reductase 99.8 4.4E-19 9.4E-24 156.9 16.5 197 6-227 47-277 (561)
33 PRK06292 dihydrolipoamide dehy 99.8 1.5E-19 3.3E-24 158.0 13.3 191 7-226 3-208 (460)
34 PRK12831 putative oxidoreducta 99.8 1.5E-19 3.2E-24 157.6 13.0 163 6-219 139-314 (464)
35 PRK07818 dihydrolipoamide dehy 99.8 7.3E-19 1.6E-23 153.9 17.1 197 7-227 4-212 (466)
36 PRK06115 dihydrolipoamide dehy 99.8 7E-19 1.5E-23 153.8 16.3 194 7-227 3-214 (466)
37 TIGR01438 TGR thioredoxin and 99.8 7.8E-19 1.7E-23 153.8 15.4 194 7-227 2-219 (484)
38 PRK13512 coenzyme A disulfide 99.8 1.1E-18 2.3E-23 151.6 15.9 175 8-226 2-187 (438)
39 PRK09564 coenzyme A disulfide 99.8 1.1E-18 2.3E-23 152.1 15.7 177 8-224 1-186 (444)
40 TIGR01350 lipoamide_DH dihydro 99.8 5.3E-19 1.1E-23 154.7 13.7 192 8-226 2-209 (461)
41 KOG0404 Thioredoxin reductase 99.8 1.7E-18 3.7E-23 131.2 14.4 176 7-219 8-190 (322)
42 TIGR01316 gltA glutamate synth 99.8 6E-19 1.3E-23 153.4 13.7 160 6-219 132-305 (449)
43 PRK06327 dihydrolipoamide dehy 99.8 1.5E-18 3.2E-23 152.2 15.5 197 6-226 3-222 (475)
44 PRK04965 NADH:flavorubredoxin 99.8 5E-19 1.1E-23 151.0 12.1 169 8-225 3-179 (377)
45 PRK06912 acoL dihydrolipoamide 99.8 1.7E-18 3.8E-23 151.1 15.2 191 9-226 2-209 (458)
46 PTZ00153 lipoamide dehydrogena 99.8 6.9E-19 1.5E-23 157.7 12.8 203 7-228 116-353 (659)
47 PRK07846 mycothione reductase; 99.8 1.1E-18 2.4E-23 151.8 13.3 188 7-227 1-206 (451)
48 TIGR01423 trypano_reduc trypan 99.8 1.4E-18 3.1E-23 151.9 13.7 199 6-227 2-230 (486)
49 PRK07845 flavoprotein disulfid 99.8 4.9E-18 1.1E-22 148.5 16.4 198 8-227 2-217 (466)
50 KOG0405 Pyridine nucleotide-di 99.8 1.6E-18 3.4E-23 139.2 11.6 208 1-228 14-230 (478)
51 PRK09754 phenylpropionate diox 99.8 2.1E-18 4.6E-23 148.0 13.3 173 7-225 3-182 (396)
52 PRK12778 putative bifunctional 99.8 1.4E-18 3.1E-23 159.8 12.6 166 6-224 430-609 (752)
53 PRK11749 dihydropyrimidine deh 99.8 1.9E-18 4.1E-23 150.8 12.5 165 6-224 139-312 (457)
54 PRK09853 putative selenate red 99.8 5.2E-18 1.1E-22 156.2 14.9 164 6-225 538-709 (1019)
55 PRK14989 nitrite reductase sub 99.8 1.1E-18 2.4E-23 160.8 10.4 171 8-225 4-183 (847)
56 PLN02852 ferredoxin-NADP+ redu 99.8 7.7E-18 1.7E-22 146.1 14.5 161 6-219 25-220 (491)
57 TIGR02374 nitri_red_nirB nitri 99.8 9.3E-19 2E-23 161.2 9.0 170 10-225 1-178 (785)
58 PRK12770 putative glutamate sy 99.8 1.6E-17 3.4E-22 140.5 15.3 176 3-219 14-206 (352)
59 PTZ00318 NADH dehydrogenase-li 99.8 4.5E-18 9.8E-23 147.1 11.3 181 6-226 9-226 (424)
60 COG1252 Ndh NADH dehydrogenase 99.8 2.8E-18 6E-23 144.1 9.2 176 7-228 3-209 (405)
61 PRK12814 putative NADPH-depend 99.8 9E-18 1.9E-22 151.9 12.6 166 6-225 192-363 (652)
62 PRK12775 putative trifunctiona 99.7 1.2E-17 2.7E-22 156.5 13.4 162 6-219 429-605 (1006)
63 COG3634 AhpF Alkyl hydroperoxi 99.7 2.5E-17 5.5E-22 132.5 12.8 178 5-219 209-387 (520)
64 KOG1335 Dihydrolipoamide dehyd 99.7 2.5E-17 5.4E-22 133.9 12.4 208 6-232 38-256 (506)
65 TIGR03315 Se_ygfK putative sel 99.7 4.9E-17 1.1E-21 150.4 13.5 162 7-224 537-706 (1012)
66 TIGR03452 mycothione_red mycot 99.7 6.4E-17 1.4E-21 140.9 13.4 187 7-226 2-208 (452)
67 COG3486 IucD Lysine/ornithine 99.7 1.3E-16 2.9E-21 131.1 13.1 200 5-227 3-231 (436)
68 PRK12810 gltD glutamate syntha 99.7 7.1E-17 1.5E-21 141.3 12.0 159 6-218 142-314 (471)
69 PRK12769 putative oxidoreducta 99.7 1.1E-16 2.3E-21 145.4 13.3 165 6-224 326-507 (654)
70 TIGR01318 gltD_gamma_fam gluta 99.7 1.7E-16 3.6E-21 138.6 12.8 165 6-224 140-321 (467)
71 PRK09897 hypothetical protein; 99.7 1.1E-15 2.4E-20 134.1 16.7 195 8-227 2-251 (534)
72 KOG4716 Thioredoxin reductase 99.7 1E-15 2.2E-20 122.9 13.1 196 6-219 18-231 (503)
73 TIGR01372 soxA sarcosine oxida 99.7 2.2E-15 4.8E-20 142.0 17.1 175 7-219 163-351 (985)
74 PRK12809 putative oxidoreducta 99.7 6.7E-16 1.5E-20 139.7 12.7 165 6-224 309-490 (639)
75 TIGR03169 Nterm_to_SelD pyridi 99.7 6.8E-16 1.5E-20 131.2 11.9 167 9-225 1-188 (364)
76 TIGR01317 GOGAT_sm_gam glutama 99.7 8.6E-16 1.9E-20 134.7 11.8 160 6-219 142-317 (485)
77 PRK13984 putative oxidoreducta 99.6 2E-15 4.3E-20 136.2 12.4 157 6-216 282-454 (604)
78 PTZ00188 adrenodoxin reductase 99.6 1.7E-14 3.7E-19 123.8 14.8 163 6-219 38-251 (506)
79 KOG1800 Ferredoxin/adrenodoxin 99.6 6.3E-15 1.4E-19 120.0 11.4 160 6-219 19-214 (468)
80 PRK06567 putative bifunctional 99.6 9.7E-15 2.1E-19 133.6 11.8 39 6-44 382-420 (1028)
81 COG4529 Uncharacterized protei 99.6 3.9E-13 8.4E-18 113.6 20.2 205 8-231 2-241 (474)
82 PRK12771 putative glutamate sy 99.6 2.5E-14 5.4E-19 128.0 12.6 159 6-219 136-301 (564)
83 COG2081 Predicted flavoprotein 99.6 4.9E-14 1.1E-18 116.3 12.7 135 7-153 3-171 (408)
84 COG0493 GltD NADPH-dependent g 99.5 2.8E-14 6.1E-19 122.8 10.4 158 6-217 122-294 (457)
85 KOG1336 Monodehydroascorbate/f 99.5 1.1E-13 2.5E-18 116.1 13.2 173 7-227 74-253 (478)
86 PF03486 HI0933_like: HI0933-l 99.5 1.6E-13 3.5E-18 117.2 11.6 134 8-152 1-169 (409)
87 PF13454 NAD_binding_9: FAD-NA 99.5 1.3E-12 2.9E-17 97.5 12.4 126 11-147 1-155 (156)
88 KOG2495 NADH-dehydrogenase (ub 99.5 3.4E-13 7.4E-18 111.6 9.7 191 6-229 54-274 (491)
89 COG1251 NirB NAD(P)H-nitrite r 99.5 7.1E-13 1.5E-17 116.6 11.5 174 7-226 3-184 (793)
90 TIGR02032 GG-red-SF geranylger 99.4 2E-12 4.2E-17 106.5 12.1 131 8-149 1-148 (295)
91 TIGR02023 BchP-ChlP geranylger 99.4 7.5E-12 1.6E-16 107.3 14.5 137 8-150 1-156 (388)
92 PRK08244 hypothetical protein; 99.4 8.7E-12 1.9E-16 110.2 15.3 133 8-149 3-159 (493)
93 PRK06847 hypothetical protein; 99.4 1.2E-11 2.6E-16 105.6 15.4 133 6-150 3-164 (375)
94 PF01494 FAD_binding_3: FAD bi 99.4 4.1E-12 8.9E-17 107.2 12.2 134 8-149 2-172 (356)
95 TIGR03385 CoA_CoA_reduc CoA-di 99.4 3.3E-12 7.1E-17 110.9 11.8 159 21-222 1-172 (427)
96 PRK04176 ribulose-1,5-biphosph 99.4 6.7E-12 1.5E-16 101.2 12.4 139 6-149 24-173 (257)
97 PRK10157 putative oxidoreducta 99.4 1.3E-11 2.9E-16 106.9 14.9 135 1-149 1-164 (428)
98 PRK06834 hypothetical protein; 99.4 1.6E-11 3.5E-16 108.0 15.4 132 7-150 3-157 (488)
99 PF07992 Pyr_redox_2: Pyridine 99.4 2.3E-13 5E-18 105.9 3.1 150 9-193 1-159 (201)
100 TIGR00292 thiazole biosynthesi 99.4 1.3E-11 2.8E-16 99.2 12.9 141 6-149 20-170 (254)
101 PRK06183 mhpA 3-(3-hydroxyphen 99.4 3.6E-11 7.8E-16 107.3 16.3 137 6-150 9-175 (538)
102 PRK06184 hypothetical protein; 99.4 2.9E-11 6.2E-16 107.1 15.6 134 7-149 3-168 (502)
103 PRK06126 hypothetical protein; 99.3 4.3E-11 9.2E-16 107.1 16.3 139 5-150 5-189 (545)
104 PRK07190 hypothetical protein; 99.3 3.5E-11 7.6E-16 105.8 15.0 135 1-149 1-165 (487)
105 COG0654 UbiH 2-polyprenyl-6-me 99.3 2E-11 4.3E-16 104.6 13.2 131 7-149 2-162 (387)
106 PRK08013 oxidoreductase; Provi 99.3 2.2E-11 4.8E-16 104.8 13.4 130 7-150 3-169 (400)
107 PLN02463 lycopene beta cyclase 99.3 2.4E-11 5.2E-16 105.3 13.4 130 7-150 28-170 (447)
108 PRK08132 FAD-dependent oxidore 99.3 6.2E-11 1.3E-15 106.1 16.5 137 5-150 21-186 (547)
109 PRK08773 2-octaprenyl-3-methyl 99.3 3.6E-11 7.7E-16 103.3 14.3 136 1-149 1-169 (392)
110 PRK07364 2-octaprenyl-6-methox 99.3 3E-11 6.4E-16 104.6 13.8 136 6-150 17-182 (415)
111 PRK10015 oxidoreductase; Provi 99.3 6.7E-11 1.4E-15 102.6 15.0 134 1-149 1-164 (429)
112 TIGR01790 carotene-cycl lycope 99.3 3.1E-11 6.6E-16 103.6 12.6 129 9-149 1-141 (388)
113 COG0644 FixC Dehydrogenases (f 99.3 2.2E-11 4.9E-16 104.6 11.6 132 7-149 3-152 (396)
114 COG1635 THI4 Ribulose 1,5-bisp 99.3 2.3E-11 5.1E-16 92.6 10.1 138 7-149 30-178 (262)
115 PRK06185 hypothetical protein; 99.3 7.4E-11 1.6E-15 101.8 14.2 136 5-149 4-169 (407)
116 PRK07045 putative monooxygenas 99.3 1.2E-10 2.6E-15 99.9 15.1 134 6-149 4-165 (388)
117 PRK07333 2-octaprenyl-6-methox 99.3 6.6E-11 1.4E-15 102.0 13.5 131 8-150 2-168 (403)
118 PRK07494 2-octaprenyl-6-methox 99.3 7.1E-11 1.5E-15 101.3 13.6 133 6-150 6-168 (388)
119 PRK06753 hypothetical protein; 99.3 9.1E-11 2E-15 100.1 13.8 127 8-149 1-152 (373)
120 PRK08163 salicylate hydroxylas 99.3 4.6E-11 1E-15 102.7 11.9 132 7-150 4-167 (396)
121 PRK05714 2-octaprenyl-3-methyl 99.3 5.4E-11 1.2E-15 102.6 11.9 131 8-150 3-169 (405)
122 KOG0399 Glutamate synthase [Am 99.3 4.4E-11 9.5E-16 109.1 11.5 158 6-211 1784-1949(2142)
123 PRK08020 ubiF 2-octaprenyl-3-m 99.3 7.3E-11 1.6E-15 101.3 12.5 133 6-150 4-170 (391)
124 PRK06617 2-octaprenyl-6-methox 99.3 1.1E-10 2.4E-15 99.7 13.2 129 8-150 2-161 (374)
125 PF05834 Lycopene_cycl: Lycope 99.2 1.5E-10 3.2E-15 98.7 13.2 128 9-149 1-142 (374)
126 PRK07588 hypothetical protein; 99.2 1.4E-10 3E-15 99.7 13.0 130 8-150 1-159 (391)
127 PRK08294 phenol 2-monooxygenas 99.2 3.7E-10 8E-15 102.3 16.2 145 5-150 30-211 (634)
128 TIGR01988 Ubi-OHases Ubiquinon 99.2 1.4E-10 3.1E-15 99.2 12.8 130 9-150 1-164 (385)
129 COG3380 Predicted NAD/FAD-depe 99.2 6.4E-11 1.4E-15 92.9 9.4 126 8-149 2-160 (331)
130 PRK11445 putative oxidoreducta 99.2 2.9E-10 6.4E-15 96.2 14.1 131 8-150 2-158 (351)
131 PLN00093 geranylgeranyl diphos 99.2 2E-10 4.4E-15 99.9 13.4 139 7-149 39-199 (450)
132 PRK07236 hypothetical protein; 99.2 2.1E-10 4.6E-15 98.3 13.4 135 1-150 1-155 (386)
133 PRK07608 ubiquinone biosynthes 99.2 1.8E-10 3.9E-15 98.8 12.9 130 7-150 5-168 (388)
134 TIGR01984 UbiH 2-polyprenyl-6- 99.2 1.4E-10 3.1E-15 99.2 11.8 129 9-149 1-162 (382)
135 PRK08243 4-hydroxybenzoate 3-m 99.2 4.4E-10 9.5E-15 96.6 14.7 133 7-150 2-164 (392)
136 PRK07538 hypothetical protein; 99.2 7E-10 1.5E-14 96.0 15.7 137 8-150 1-166 (413)
137 PLN02697 lycopene epsilon cycl 99.2 4.5E-10 9.8E-15 99.0 14.3 130 6-149 107-248 (529)
138 TIGR01989 COQ6 Ubiquinone bios 99.2 2.7E-10 5.9E-15 99.2 12.8 135 8-150 1-184 (437)
139 PF01266 DAO: FAD dependent ox 99.2 1.8E-10 4E-15 97.2 11.4 60 78-150 144-204 (358)
140 PRK09126 hypothetical protein; 99.2 3.9E-10 8.5E-15 96.8 13.6 132 7-150 3-168 (392)
141 PF01946 Thi4: Thi4 family; PD 99.2 1.8E-10 3.9E-15 88.2 9.9 138 6-149 16-165 (230)
142 PRK06475 salicylate hydroxylas 99.2 3.3E-10 7.1E-15 97.6 12.9 134 8-150 3-168 (400)
143 TIGR02028 ChlP geranylgeranyl 99.2 5.1E-10 1.1E-14 96.3 14.0 138 8-149 1-160 (398)
144 PRK08850 2-octaprenyl-6-methox 99.2 4.7E-10 1E-14 96.8 13.0 132 7-150 4-169 (405)
145 TIGR00275 flavoprotein, HI0933 99.2 4.3E-10 9.4E-15 96.7 12.6 128 11-151 1-162 (400)
146 PRK06996 hypothetical protein; 99.2 4.7E-10 1E-14 96.6 12.7 132 7-147 11-172 (398)
147 PRK05868 hypothetical protein; 99.2 1.3E-09 2.8E-14 93.0 14.9 130 8-150 2-161 (372)
148 PRK13369 glycerol-3-phosphate 99.2 9.4E-10 2E-14 97.4 14.5 63 80-150 154-216 (502)
149 TIGR02360 pbenz_hydroxyl 4-hyd 99.2 8.6E-10 1.9E-14 94.7 13.7 135 7-150 2-164 (390)
150 PRK05732 2-octaprenyl-6-methox 99.1 7.7E-10 1.7E-14 95.1 13.1 131 7-149 3-169 (395)
151 PRK08849 2-octaprenyl-3-methyl 99.1 7.5E-10 1.6E-14 94.9 13.0 131 8-150 4-168 (384)
152 PF12831 FAD_oxidored: FAD dep 99.1 4.9E-11 1.1E-15 103.4 4.7 131 9-147 1-148 (428)
153 COG0446 HcaD Uncharacterized N 99.1 4.8E-10 1.1E-14 96.7 10.9 167 10-226 1-175 (415)
154 PRK12266 glpD glycerol-3-phosp 99.1 1.1E-09 2.5E-14 96.9 13.0 39 5-43 4-42 (508)
155 TIGR03219 salicylate_mono sali 99.1 1.3E-09 2.8E-14 94.4 13.0 129 8-150 1-160 (414)
156 PRK05192 tRNA uridine 5-carbox 99.1 1.3E-09 2.9E-14 96.6 12.5 132 6-149 3-157 (618)
157 TIGR01377 soxA_mon sarcosine o 99.1 2.2E-09 4.8E-14 91.8 13.4 60 78-150 142-201 (380)
158 PF00070 Pyr_redox: Pyridine n 99.1 2.5E-09 5.5E-14 70.4 10.4 79 9-124 1-79 (80)
159 PRK11259 solA N-methyltryptoph 99.1 3.5E-09 7.6E-14 90.4 13.5 61 78-151 146-206 (376)
160 PRK11728 hydroxyglutarate oxid 99.1 3.6E-09 7.9E-14 90.9 13.1 58 79-149 147-204 (393)
161 PRK06481 fumarate reductase fl 99.0 1.1E-08 2.3E-13 90.8 15.7 38 7-44 61-98 (506)
162 TIGR01813 flavo_cyto_c flavocy 99.0 1.3E-08 2.8E-13 88.9 16.0 135 9-150 1-193 (439)
163 COG0578 GlpA Glycerol-3-phosph 99.0 4E-09 8.6E-14 91.8 12.2 56 87-149 170-225 (532)
164 PLN02661 Putative thiazole syn 99.0 2.9E-09 6.2E-14 88.4 10.7 139 6-149 91-244 (357)
165 KOG2820 FAD-dependent oxidored 99.0 7.1E-09 1.5E-13 84.0 12.3 145 1-155 1-218 (399)
166 PF00890 FAD_binding_2: FAD bi 99.0 6.1E-09 1.3E-13 90.2 12.8 136 9-150 1-204 (417)
167 PRK11101 glpA sn-glycerol-3-ph 99.0 6E-09 1.3E-13 93.1 12.9 36 6-41 5-40 (546)
168 PLN02985 squalene monooxygenas 99.0 1.4E-08 3.1E-13 89.9 15.0 137 6-150 42-209 (514)
169 PRK05976 dihydrolipoamide dehy 99.0 2.1E-08 4.6E-13 88.2 15.8 105 7-154 180-284 (472)
170 TIGR03329 Phn_aa_oxid putative 99.0 7.6E-09 1.7E-13 90.7 12.6 60 78-151 180-239 (460)
171 COG1249 Lpd Pyruvate/2-oxoglut 99.0 1.5E-08 3.2E-13 87.7 14.0 107 5-156 171-277 (454)
172 PF01134 GIDA: Glucose inhibit 99.0 8.3E-09 1.8E-13 87.0 12.0 127 9-147 1-150 (392)
173 PRK12409 D-amino acid dehydrog 99.0 1.4E-08 3E-13 87.9 13.7 64 79-149 195-258 (410)
174 PLN02464 glycerol-3-phosphate 99.0 1.1E-08 2.4E-13 92.6 13.0 39 6-44 70-108 (627)
175 PTZ00383 malate:quinone oxidor 99.0 1.3E-08 2.9E-13 89.3 13.1 63 78-150 208-274 (497)
176 PLN02927 antheraxanthin epoxid 99.0 1.1E-08 2.4E-13 92.1 12.7 132 5-150 79-249 (668)
177 TIGR01350 lipoamide_DH dihydro 99.0 4.9E-08 1.1E-12 85.7 16.6 103 7-154 170-272 (461)
178 PRK08274 tricarballylate dehyd 99.0 2.9E-08 6.3E-13 87.3 15.0 138 6-150 3-193 (466)
179 PF13450 NAD_binding_8: NAD(P) 99.0 1.4E-09 3.1E-14 69.0 5.0 49 12-60 1-49 (68)
180 PRK08275 putative oxidoreducta 99.0 3.2E-08 7E-13 88.7 15.5 141 5-150 7-201 (554)
181 TIGR01789 lycopene_cycl lycope 98.9 1.1E-08 2.4E-13 87.1 11.9 122 9-149 1-138 (370)
182 COG0579 Predicted dehydrogenas 98.9 2.1E-08 4.4E-13 85.6 13.3 62 78-149 150-211 (429)
183 TIGR03364 HpnW_proposed FAD de 98.9 1.6E-08 3.5E-13 86.0 12.7 34 8-41 1-34 (365)
184 PRK01747 mnmC bifunctional tRN 98.9 9.5E-09 2.1E-13 94.0 11.9 60 78-150 405-464 (662)
185 TIGR02053 MerA mercuric reduct 98.9 1.1E-07 2.4E-12 83.5 17.6 104 7-154 166-269 (463)
186 PRK04965 NADH:flavorubredoxin 98.9 3.4E-08 7.3E-13 84.5 13.9 98 7-148 141-238 (377)
187 TIGR00136 gidA glucose-inhibit 98.9 3.3E-08 7.1E-13 87.7 13.9 131 8-149 1-154 (617)
188 PRK08958 sdhA succinate dehydr 98.9 5.1E-08 1.1E-12 87.8 15.5 43 1-43 1-43 (588)
189 PRK07573 sdhA succinate dehydr 98.9 4.3E-08 9.4E-13 89.0 15.0 37 7-43 35-71 (640)
190 PRK06912 acoL dihydrolipoamide 98.9 9.9E-08 2.1E-12 83.7 16.7 102 7-154 170-271 (458)
191 PLN00128 Succinate dehydrogena 98.9 5.5E-08 1.2E-12 88.2 15.2 38 7-44 50-87 (635)
192 PRK09078 sdhA succinate dehydr 98.9 4.5E-08 9.8E-13 88.4 14.6 38 6-43 11-48 (598)
193 PTZ00139 Succinate dehydrogena 98.9 6.7E-08 1.4E-12 87.5 15.6 39 6-44 28-66 (617)
194 PRK07121 hypothetical protein; 98.9 7.9E-09 1.7E-13 91.4 9.6 38 7-44 20-57 (492)
195 PRK06416 dihydrolipoamide dehy 98.9 1.1E-07 2.4E-12 83.5 16.7 104 7-154 172-275 (462)
196 PF04820 Trp_halogenase: Trypt 98.9 3.9E-09 8.5E-14 92.0 7.4 62 77-149 150-211 (454)
197 PRK13339 malate:quinone oxidor 98.9 5.8E-08 1.2E-12 85.2 14.5 35 6-40 5-41 (497)
198 PRK06263 sdhA succinate dehydr 98.9 5.2E-08 1.1E-12 87.1 14.5 143 1-150 1-198 (543)
199 PRK07251 pyridine nucleotide-d 98.9 5.2E-08 1.1E-12 85.0 13.8 100 7-154 157-256 (438)
200 TIGR01373 soxB sarcosine oxida 98.9 6.4E-08 1.4E-12 83.6 14.2 35 6-40 29-65 (407)
201 PRK07057 sdhA succinate dehydr 98.9 1E-07 2.2E-12 86.0 15.8 36 6-41 11-46 (591)
202 PRK08641 sdhA succinate dehydr 98.9 8.3E-08 1.8E-12 86.5 15.0 37 7-43 3-39 (589)
203 PRK07804 L-aspartate oxidase; 98.9 5.2E-08 1.1E-12 87.0 13.6 139 7-150 16-211 (541)
204 TIGR01320 mal_quin_oxido malat 98.9 6.2E-08 1.3E-12 85.2 13.4 67 78-150 175-241 (483)
205 PRK06452 sdhA succinate dehydr 98.8 8.9E-08 1.9E-12 85.9 14.5 39 6-44 4-42 (566)
206 PRK06854 adenylylsulfate reduc 98.8 8.7E-08 1.9E-12 86.7 14.2 35 7-41 11-47 (608)
207 PRK06370 mercuric reductase; V 98.8 9.7E-08 2.1E-12 83.9 14.2 105 6-154 170-274 (463)
208 PRK06327 dihydrolipoamide dehy 98.8 3.3E-07 7.1E-12 80.8 17.0 105 7-154 183-287 (475)
209 PRK05249 soluble pyridine nucl 98.8 1.1E-07 2.3E-12 83.6 13.9 100 7-153 175-274 (461)
210 PRK07818 dihydrolipoamide dehy 98.8 2.6E-07 5.7E-12 81.2 16.4 105 7-154 172-276 (466)
211 KOG1335 Dihydrolipoamide dehyd 98.8 1.4E-07 3E-12 77.9 13.3 159 6-210 210-368 (506)
212 TIGR00551 nadB L-aspartate oxi 98.8 8.3E-08 1.8E-12 84.8 13.2 135 7-150 2-190 (488)
213 PRK06175 L-aspartate oxidase; 98.8 9.4E-08 2E-12 83.1 13.3 38 6-44 3-40 (433)
214 TIGR01812 sdhA_frdA_Gneg succi 98.8 1.5E-07 3.1E-12 84.8 14.9 35 9-43 1-35 (566)
215 PRK08401 L-aspartate oxidase; 98.8 5.8E-08 1.3E-12 85.2 11.9 34 8-41 2-35 (466)
216 PRK09754 phenylpropionate diox 98.8 5.9E-08 1.3E-12 83.5 11.7 96 7-147 144-239 (396)
217 PRK06115 dihydrolipoamide dehy 98.8 1.9E-07 4.1E-12 82.1 14.4 106 6-153 173-278 (466)
218 PRK06116 glutathione reductase 98.8 1.5E-07 3.3E-12 82.4 13.8 102 7-154 167-268 (450)
219 PRK12842 putative succinate de 98.8 1.1E-07 2.4E-12 85.7 13.0 39 6-44 8-46 (574)
220 PRK07803 sdhA succinate dehydr 98.8 1.9E-07 4.1E-12 84.8 14.4 37 7-43 8-44 (626)
221 KOG2415 Electron transfer flav 98.8 7.5E-08 1.6E-12 80.3 10.6 143 4-149 73-256 (621)
222 PLN02815 L-aspartate oxidase 98.8 2.1E-07 4.6E-12 83.7 14.4 37 7-44 29-65 (594)
223 PRK05257 malate:quinone oxidor 98.8 1.2E-07 2.7E-12 83.5 12.6 64 81-150 183-247 (494)
224 PRK05945 sdhA succinate dehydr 98.8 1.8E-07 3.9E-12 84.2 14.0 37 7-43 3-41 (575)
225 PRK08205 sdhA succinate dehydr 98.8 2.7E-07 5.9E-12 83.2 14.9 37 6-43 4-40 (583)
226 TIGR01424 gluta_reduc_2 glutat 98.8 1.9E-07 4E-12 81.7 13.5 100 7-153 166-265 (446)
227 PRK06069 sdhA succinate dehydr 98.8 2.3E-07 5E-12 83.6 14.3 39 6-44 4-45 (577)
228 PRK12839 hypothetical protein; 98.8 1.8E-07 4E-12 83.9 13.3 44 1-44 1-45 (572)
229 PRK00711 D-amino acid dehydrog 98.7 1.2E-07 2.6E-12 82.1 11.9 33 9-41 2-34 (416)
230 COG1252 Ndh NADH dehydrogenase 98.7 1.1E-07 2.4E-12 80.6 11.0 132 8-195 156-300 (405)
231 COG0665 DadA Glycine/D-amino a 98.7 8.1E-08 1.8E-12 82.3 10.4 38 6-43 3-40 (387)
232 PF06039 Mqo: Malate:quinone o 98.7 2.7E-07 5.9E-12 78.5 12.9 64 80-149 180-244 (488)
233 PRK09231 fumarate reductase fl 98.7 2.7E-07 5.8E-12 83.1 13.8 39 6-44 3-43 (582)
234 TIGR01176 fum_red_Fp fumarate 98.7 3.8E-07 8.2E-12 82.1 14.7 38 7-44 3-42 (580)
235 PLN02507 glutathione reductase 98.7 3E-07 6.5E-12 81.4 13.9 101 7-154 203-303 (499)
236 TIGR01811 sdhA_Bsu succinate d 98.7 3.9E-07 8.5E-12 82.3 14.8 33 10-42 1-33 (603)
237 PRK07846 mycothione reductase; 98.7 6.4E-07 1.4E-11 78.4 15.7 100 7-154 166-265 (451)
238 PRK12835 3-ketosteroid-delta-1 98.7 5.7E-07 1.2E-11 81.0 15.5 39 6-44 10-48 (584)
239 KOG2614 Kynurenine 3-monooxyge 98.7 1.6E-07 3.6E-12 78.3 11.0 37 7-43 2-38 (420)
240 PRK08626 fumarate reductase fl 98.7 4.5E-07 9.8E-12 82.6 14.8 37 6-42 4-40 (657)
241 TIGR01421 gluta_reduc_1 glutat 98.7 4.1E-07 8.8E-12 79.6 14.0 103 7-154 166-268 (450)
242 PRK14727 putative mercuric red 98.7 1E-06 2.2E-11 77.7 16.4 94 7-147 188-281 (479)
243 PRK07845 flavoprotein disulfid 98.7 3.7E-07 7.9E-12 80.3 13.5 101 7-154 177-277 (466)
244 PRK14694 putative mercuric red 98.7 3.3E-07 7.1E-12 80.6 13.2 98 7-153 178-275 (468)
245 PRK09564 coenzyme A disulfide 98.7 3.3E-07 7.1E-12 80.1 13.1 96 7-147 149-244 (444)
246 PRK06292 dihydrolipoamide dehy 98.7 1.1E-06 2.4E-11 77.2 16.3 104 6-154 168-271 (460)
247 PTZ00367 squalene epoxidase; P 98.7 2.3E-07 4.9E-12 83.0 11.9 34 7-40 33-66 (567)
248 PRK08010 pyridine nucleotide-d 98.7 4.1E-07 8.8E-12 79.5 13.3 99 7-153 158-256 (441)
249 KOG1298 Squalene monooxygenase 98.7 1.4E-07 3.1E-12 77.9 9.6 136 6-150 44-209 (509)
250 PRK06467 dihydrolipoamide dehy 98.7 5.3E-07 1.1E-11 79.4 13.9 104 7-154 174-277 (471)
251 PRK08255 salicylyl-CoA 5-hydro 98.7 8.7E-08 1.9E-12 88.9 9.3 119 8-150 1-142 (765)
252 PRK09077 L-aspartate oxidase; 98.7 6.7E-07 1.4E-11 79.9 14.1 38 6-44 7-44 (536)
253 TIGR03452 mycothione_red mycot 98.7 1.5E-06 3.2E-11 76.1 16.0 100 7-154 169-268 (452)
254 KOG2404 Fumarate reductase, fl 98.7 2.9E-07 6.3E-12 74.4 10.3 139 8-151 10-208 (477)
255 PRK08071 L-aspartate oxidase; 98.7 5.8E-07 1.2E-11 79.8 13.3 37 7-44 3-39 (510)
256 PRK13977 myosin-cross-reactive 98.6 1.1E-06 2.4E-11 77.6 14.7 39 7-45 22-64 (576)
257 TIGR01438 TGR thioredoxin and 98.6 7.5E-07 1.6E-11 78.6 13.7 102 7-153 180-281 (484)
258 PRK13512 coenzyme A disulfide 98.6 3.7E-07 8E-12 79.6 11.6 96 7-153 148-243 (438)
259 PRK13748 putative mercuric red 98.6 5.4E-07 1.2E-11 81.1 12.9 99 7-154 270-368 (561)
260 PTZ00306 NADH-dependent fumara 98.6 1.2E-06 2.6E-11 84.8 15.9 39 6-44 408-446 (1167)
261 PRK06134 putative FAD-binding 98.6 1.6E-06 3.4E-11 78.3 15.8 39 6-44 11-49 (581)
262 TIGR01423 trypano_reduc trypan 98.6 2.1E-06 4.7E-11 75.7 16.1 102 6-153 186-290 (486)
263 PRK12837 3-ketosteroid-delta-1 98.6 4.5E-07 9.9E-12 80.6 12.0 43 1-44 1-43 (513)
264 PRK07395 L-aspartate oxidase; 98.6 3.5E-07 7.6E-12 81.8 11.2 39 5-44 7-45 (553)
265 PRK14989 nitrite reductase sub 98.6 9.3E-07 2E-11 82.6 14.3 102 7-152 145-246 (847)
266 TIGR03385 CoA_CoA_reduc CoA-di 98.6 6.3E-07 1.4E-11 78.0 12.5 95 7-147 137-231 (427)
267 PRK12845 3-ketosteroid-delta-1 98.6 6.3E-07 1.4E-11 80.4 12.6 38 6-44 15-52 (564)
268 COG1233 Phytoene dehydrogenase 98.6 5.9E-08 1.3E-12 85.6 6.0 41 7-47 3-43 (487)
269 PRK07843 3-ketosteroid-delta-1 98.6 1.9E-06 4E-11 77.4 15.5 40 5-44 5-44 (557)
270 PRK12834 putative FAD-binding 98.6 1.3E-06 2.7E-11 78.4 14.2 39 6-44 3-43 (549)
271 PTZ00052 thioredoxin reductase 98.6 1E-06 2.2E-11 78.1 13.3 100 7-154 182-281 (499)
272 COG1148 HdrA Heterodisulfide r 98.6 1.4E-07 2.9E-12 80.1 7.1 94 7-124 124-217 (622)
273 PRK07512 L-aspartate oxidase; 98.6 6.8E-07 1.5E-11 79.4 11.9 34 6-41 8-41 (513)
274 KOG2755 Oxidoreductase [Genera 98.6 1.9E-07 4E-12 73.3 7.2 152 9-219 1-165 (334)
275 PTZ00058 glutathione reductase 98.6 1.4E-06 3E-11 77.9 13.4 103 7-154 237-339 (561)
276 PRK07208 hypothetical protein; 98.6 1.4E-07 3E-12 83.3 6.7 41 6-46 3-43 (479)
277 KOG0029 Amine oxidase [Seconda 98.5 1.1E-07 2.4E-12 83.4 5.4 39 6-44 14-52 (501)
278 TIGR02374 nitri_red_nirB nitri 98.5 8.2E-07 1.8E-11 82.7 11.4 101 7-153 140-240 (785)
279 COG0445 GidA Flavin-dependent 98.5 3.7E-07 8E-12 78.8 8.1 130 6-148 3-157 (621)
280 PRK12844 3-ketosteroid-delta-1 98.5 4.2E-06 9.1E-11 75.1 15.3 39 6-44 5-43 (557)
281 COG1053 SdhA Succinate dehydro 98.5 1.2E-06 2.6E-11 78.1 11.5 39 5-43 4-42 (562)
282 COG0446 HcaD Uncharacterized N 98.5 2.6E-06 5.6E-11 73.5 13.3 99 7-147 136-235 (415)
283 PTZ00153 lipoamide dehydrogena 98.5 2.4E-06 5.3E-11 77.6 13.5 110 7-154 312-430 (659)
284 PRK12843 putative FAD-binding 98.5 4.1E-06 8.9E-11 75.6 14.9 38 7-44 16-53 (578)
285 PTZ00318 NADH dehydrogenase-li 98.5 4E-06 8.8E-11 72.9 14.0 91 8-147 174-278 (424)
286 PRK13800 putative oxidoreducta 98.5 4.1E-06 8.9E-11 79.3 15.1 35 7-41 13-47 (897)
287 TIGR02061 aprA adenosine phosp 98.5 6E-07 1.3E-11 81.0 9.0 33 9-41 1-37 (614)
288 TIGR03378 glycerol3P_GlpB glyc 98.5 1.4E-06 3.1E-11 74.4 10.8 61 80-150 262-324 (419)
289 TIGR00137 gid_trmFO tRNA:m(5)U 98.5 6.2E-07 1.3E-11 76.9 8.4 35 8-42 1-35 (433)
290 COG2907 Predicted NAD/FAD-bind 98.5 5.2E-07 1.1E-11 73.7 7.4 39 5-44 6-44 (447)
291 PLN02546 glutathione reductase 98.5 3.7E-06 7.9E-11 75.3 13.3 102 6-153 251-352 (558)
292 TIGR03140 AhpF alkyl hydropero 98.5 3.2E-06 6.8E-11 75.3 12.5 100 7-153 352-452 (515)
293 PRK11883 protoporphyrinogen ox 98.4 3.1E-07 6.8E-12 80.3 5.8 38 8-45 1-40 (451)
294 TIGR01292 TRX_reduct thioredox 98.4 3.2E-06 6.8E-11 69.8 11.5 95 7-147 141-236 (300)
295 KOG0042 Glycerol-3-phosphate d 98.4 1.9E-07 4.1E-12 80.2 4.1 40 6-45 66-105 (680)
296 PRK10262 thioredoxin reductase 98.4 4.5E-06 9.7E-11 69.8 12.4 105 7-153 146-250 (321)
297 PLN02576 protoporphyrinogen ox 98.4 5.4E-07 1.2E-11 79.9 6.8 41 5-45 10-51 (496)
298 COG3075 GlpB Anaerobic glycero 98.4 1.3E-06 2.8E-11 70.9 8.1 34 7-40 2-35 (421)
299 TIGR02485 CobZ_N-term precorri 98.4 3.3E-06 7.1E-11 73.6 10.9 62 80-150 122-184 (432)
300 PLN02676 polyamine oxidase 98.4 8.1E-07 1.8E-11 78.4 6.7 47 5-51 24-71 (487)
301 TIGR00562 proto_IX_ox protopor 98.4 7.2E-07 1.6E-11 78.4 6.3 38 7-44 2-43 (462)
302 PLN02268 probable polyamine ox 98.4 6.4E-07 1.4E-11 78.1 5.7 38 8-45 1-38 (435)
303 TIGR02733 desat_CrtD C-3',4' d 98.4 9.2E-07 2E-11 78.4 6.6 37 8-44 2-38 (492)
304 PRK15317 alkyl hydroperoxide r 98.3 7.3E-06 1.6E-10 73.1 11.9 96 7-147 351-447 (517)
305 PF00070 Pyr_redox: Pyridine n 98.3 9.2E-07 2E-11 58.1 4.4 39 188-227 1-39 (80)
306 COG0029 NadB Aspartate oxidase 98.3 7.2E-06 1.6E-10 70.3 10.7 132 9-149 9-196 (518)
307 PRK07233 hypothetical protein; 98.3 7.5E-07 1.6E-11 77.5 5.1 36 9-44 1-36 (434)
308 COG3349 Uncharacterized conser 98.3 8.1E-07 1.8E-11 76.5 5.1 41 8-48 1-44 (485)
309 PLN02568 polyamine oxidase 98.3 1.4E-06 3.1E-11 77.6 6.1 41 7-47 5-50 (539)
310 TIGR02730 carot_isom carotene 98.3 1.4E-06 3.1E-11 77.2 6.1 37 8-44 1-37 (493)
311 TIGR00031 UDP-GALP_mutase UDP- 98.3 1.2E-06 2.5E-11 74.4 5.1 37 8-44 2-38 (377)
312 TIGR02734 crtI_fam phytoene de 98.3 1.3E-06 2.7E-11 77.7 5.6 35 10-44 1-35 (502)
313 KOG1346 Programmed cell death 98.3 3.4E-06 7.4E-11 70.6 7.3 181 6-218 177-383 (659)
314 COG1232 HemY Protoporphyrinoge 98.2 1.7E-06 3.8E-11 74.5 5.7 41 8-48 1-43 (444)
315 KOG2852 Possible oxidoreductas 98.2 2.5E-05 5.3E-10 62.6 11.3 39 6-44 9-53 (380)
316 KOG0685 Flavin-containing amin 98.2 2.1E-06 4.5E-11 73.0 5.6 41 6-46 20-61 (498)
317 PRK12416 protoporphyrinogen ox 98.2 2.3E-06 4.9E-11 75.3 5.7 37 8-44 2-44 (463)
318 KOG1336 Monodehydroascorbate/f 98.2 1.9E-05 4.1E-10 67.3 10.5 107 7-157 213-319 (478)
319 COG0562 Glf UDP-galactopyranos 98.2 2.3E-06 5E-11 69.3 4.8 39 7-45 1-39 (374)
320 PTZ00363 rab-GDP dissociation 98.2 2.3E-06 4.9E-11 74.3 4.9 42 6-47 3-44 (443)
321 KOG3851 Sulfide:quinone oxidor 98.2 1.4E-05 3E-10 64.8 8.9 37 5-41 37-75 (446)
322 TIGR03169 Nterm_to_SelD pyridi 98.1 5.3E-05 1.1E-09 64.5 12.7 91 7-147 145-241 (364)
323 COG2509 Uncharacterized FAD-de 98.1 2.3E-05 5E-10 66.5 10.0 58 81-149 173-230 (486)
324 KOG2311 NAD/FAD-utilizing prot 98.1 1.7E-05 3.7E-10 67.6 9.0 132 6-148 27-185 (679)
325 TIGR02731 phytoene_desat phyto 98.1 3.3E-06 7.1E-11 74.1 5.0 36 9-44 1-36 (453)
326 PRK12770 putative glutamate sy 98.1 7.2E-05 1.6E-09 63.5 13.0 97 7-147 172-284 (352)
327 PF13434 K_oxygenase: L-lysine 98.1 4.3E-05 9.4E-10 64.3 11.3 134 6-146 189-338 (341)
328 TIGR01316 gltA glutamate synth 98.1 0.00012 2.7E-09 64.1 14.3 104 7-153 272-389 (449)
329 PLN02529 lysine-specific histo 98.1 5.5E-06 1.2E-10 75.9 5.6 39 6-44 159-197 (738)
330 KOG2665 Predicted FAD-dependen 98.1 4.6E-05 1E-09 61.8 9.8 39 5-43 46-86 (453)
331 COG1231 Monoamine oxidase [Ami 98.1 6.4E-06 1.4E-10 69.9 5.2 40 5-44 5-44 (450)
332 PRK05335 tRNA (uracil-5-)-meth 98.0 6.8E-06 1.5E-10 70.3 5.0 35 8-42 3-37 (436)
333 TIGR03143 AhpF_homolog putativ 98.0 8.2E-05 1.8E-09 66.9 11.6 35 7-41 143-177 (555)
334 TIGR02732 zeta_caro_desat caro 98.0 8.6E-06 1.9E-10 71.8 5.0 36 9-44 1-36 (474)
335 KOG2495 NADH-dehydrogenase (ub 98.0 1.8E-05 4E-10 66.6 6.2 103 7-154 218-334 (491)
336 PLN02328 lysine-specific histo 98.0 1.3E-05 2.7E-10 74.1 5.5 40 6-45 237-276 (808)
337 KOG2960 Protein involved in th 98.0 7.4E-06 1.6E-10 62.6 3.4 138 7-148 76-233 (328)
338 PF00732 GMC_oxred_N: GMC oxid 98.0 9.2E-06 2E-10 67.1 4.3 35 8-42 1-36 (296)
339 KOG2853 Possible oxidoreductas 98.0 5.4E-05 1.2E-09 62.1 8.4 35 6-40 85-123 (509)
340 PRK12831 putative oxidoreducta 97.9 0.00034 7.4E-09 61.6 14.2 35 6-40 280-314 (464)
341 PLN02487 zeta-carotene desatur 97.9 1.3E-05 2.8E-10 71.7 5.3 38 7-44 75-112 (569)
342 KOG2844 Dimethylglycine dehydr 97.9 6.4E-05 1.4E-09 66.7 8.9 60 78-149 184-243 (856)
343 PRK01438 murD UDP-N-acetylmura 97.9 4.7E-05 1E-09 67.3 8.4 34 7-40 16-49 (480)
344 PLN02612 phytoene desaturase 97.9 2E-05 4.3E-10 71.0 5.4 39 6-44 92-130 (567)
345 PRK11749 dihydropyrimidine deh 97.9 0.00028 6.1E-09 62.0 12.5 104 6-152 272-388 (457)
346 KOG3855 Monooxygenase involved 97.9 0.00031 6.7E-09 59.1 11.8 34 6-39 35-72 (481)
347 PRK12778 putative bifunctional 97.9 0.00057 1.2E-08 63.8 14.8 34 7-40 570-604 (752)
348 COG3573 Predicted oxidoreducta 97.8 0.00028 6.1E-09 57.9 10.9 35 6-40 4-38 (552)
349 TIGR02462 pyranose_ox pyranose 97.8 2.1E-05 4.6E-10 69.8 4.9 40 8-47 1-40 (544)
350 TIGR01318 gltD_gamma_fam gluta 97.8 0.0013 2.8E-08 58.0 16.0 34 7-40 282-316 (467)
351 PRK12769 putative oxidoreducta 97.8 0.002 4.3E-08 59.3 16.5 101 7-147 468-582 (654)
352 PLN03000 amine oxidase 97.8 4.3E-05 9.4E-10 70.8 5.5 41 6-46 183-223 (881)
353 PRK12814 putative NADPH-depend 97.7 0.0017 3.6E-08 59.7 15.7 35 6-40 322-357 (652)
354 KOG1276 Protoporphyrinogen oxi 97.7 7.6E-05 1.6E-09 62.9 6.2 42 7-48 11-54 (491)
355 PLN02976 amine oxidase 97.7 4.7E-05 1E-09 73.5 5.5 43 6-48 692-734 (1713)
356 PRK12810 gltD glutamate syntha 97.7 0.0011 2.4E-08 58.5 13.9 112 7-152 281-401 (471)
357 PRK02106 choline dehydrogenase 97.7 4.3E-05 9.2E-10 68.9 4.8 35 6-40 4-39 (560)
358 PRK05329 anaerobic glycerol-3- 97.7 6.6E-05 1.4E-09 64.9 4.9 34 7-40 2-35 (422)
359 TIGR01372 soxA sarcosine oxida 97.6 0.00051 1.1E-08 65.9 11.2 95 7-152 317-412 (985)
360 KOG0405 Pyridine nucleotide-di 97.6 0.00031 6.7E-09 57.9 7.8 104 6-155 188-291 (478)
361 COG0492 TrxB Thioredoxin reduc 97.6 0.001 2.2E-08 55.1 10.6 98 6-153 142-240 (305)
362 COG2303 BetA Choline dehydroge 97.5 0.00011 2.4E-09 65.8 4.5 39 2-40 2-40 (542)
363 PRK12809 putative oxidoreducta 97.5 0.0082 1.8E-07 55.1 16.7 34 7-40 451-485 (639)
364 COG1206 Gid NAD(FAD)-utilizing 97.5 0.00033 7.1E-09 57.3 6.3 35 8-42 4-38 (439)
365 PF06100 Strep_67kDa_ant: Stre 97.5 0.0052 1.1E-07 53.4 13.7 39 7-45 2-44 (500)
366 TIGR01317 GOGAT_sm_gam glutama 97.4 0.013 2.7E-07 52.1 15.8 36 6-41 282-318 (485)
367 PRK12779 putative bifunctional 97.4 0.0032 7E-08 60.0 12.5 34 7-40 447-480 (944)
368 KOG3923 D-aspartate oxidase [A 97.4 0.00033 7.2E-09 56.4 4.9 34 7-40 3-43 (342)
369 TIGR01810 betA choline dehydro 97.3 0.0002 4.4E-09 64.1 3.9 33 9-41 1-34 (532)
370 PRK09853 putative selenate red 97.3 0.0083 1.8E-07 57.2 14.3 35 6-40 667-703 (1019)
371 TIGR03862 flavo_PP4765 unchara 97.3 0.0026 5.6E-08 54.2 9.9 61 79-152 84-144 (376)
372 PRK12775 putative trifunctiona 97.3 0.0091 2E-07 57.5 14.4 35 6-40 570-605 (1006)
373 PLN02785 Protein HOTHEAD 97.2 0.0004 8.8E-09 62.7 4.7 35 6-41 54-88 (587)
374 PLN02172 flavin-containing mon 97.2 0.0012 2.7E-08 57.9 7.4 35 6-40 203-237 (461)
375 KOG4254 Phytoene desaturase [C 97.1 0.00042 9.2E-09 59.0 3.6 39 6-44 13-51 (561)
376 TIGR03315 Se_ygfK putative sel 97.1 0.014 3E-07 55.9 13.6 35 6-40 665-701 (1012)
377 KOG1346 Programmed cell death 97.1 0.0022 4.8E-08 54.2 7.5 97 6-147 346-447 (659)
378 PF00743 FMO-like: Flavin-bind 97.1 0.0026 5.6E-08 56.9 8.3 35 6-40 182-216 (531)
379 KOG4716 Thioredoxin reductase 97.1 0.0016 3.5E-08 53.7 6.1 102 7-148 198-299 (503)
380 PRK13984 putative oxidoreducta 97.0 0.033 7.2E-07 50.9 15.2 31 7-37 418-454 (604)
381 COG3486 IucD Lysine/ornithine 97.0 0.0079 1.7E-07 50.9 9.9 52 97-154 292-343 (436)
382 PRK05329 anaerobic glycerol-3- 97.0 0.0071 1.5E-07 52.5 9.9 95 11-149 219-318 (422)
383 KOG1238 Glucose dehydrogenase/ 96.9 0.0012 2.5E-08 58.8 4.3 37 6-42 56-93 (623)
384 PRK12771 putative glutamate sy 96.8 0.024 5.3E-07 51.3 12.5 34 7-40 267-301 (564)
385 COG1251 NirB NAD(P)H-nitrite r 96.8 0.0035 7.6E-08 56.7 6.4 100 7-152 145-244 (793)
386 PF01210 NAD_Gly3P_dh_N: NAD-d 96.8 0.0017 3.6E-08 48.4 3.7 32 9-40 1-32 (157)
387 PF13450 NAD_binding_8: NAD(P) 96.7 0.002 4.3E-08 40.7 3.4 29 191-219 1-29 (68)
388 PF00996 GDI: GDP dissociation 96.7 0.002 4.4E-08 55.8 4.6 44 5-48 2-45 (438)
389 COG0569 TrkA K+ transport syst 96.7 0.0026 5.5E-08 50.4 4.5 33 8-40 1-33 (225)
390 PF02737 3HCDH_N: 3-hydroxyacy 96.6 0.0029 6.4E-08 48.3 4.2 32 9-40 1-32 (180)
391 PF03721 UDPG_MGDP_dh_N: UDP-g 96.6 0.0024 5.1E-08 49.0 3.5 34 8-41 1-34 (185)
392 PRK06719 precorrin-2 dehydroge 96.5 0.0051 1.1E-07 45.8 4.8 34 6-39 12-45 (157)
393 PRK07066 3-hydroxybutyryl-CoA 96.5 0.0051 1.1E-07 51.3 5.1 40 1-40 1-40 (321)
394 PF13241 NAD_binding_7: Putati 96.5 0.0033 7.1E-08 43.3 3.4 35 6-40 6-40 (103)
395 TIGR01470 cysG_Nterm siroheme 96.4 0.0059 1.3E-07 47.6 5.0 36 6-41 8-43 (205)
396 PRK06718 precorrin-2 dehydroge 96.3 0.0081 1.8E-07 46.7 4.9 35 6-40 9-43 (202)
397 KOG0404 Thioredoxin reductase 96.3 0.024 5.3E-07 44.2 7.3 99 6-148 156-254 (322)
398 PRK05335 tRNA (uracil-5-)-meth 96.2 0.0051 1.1E-07 53.1 3.9 33 187-219 3-35 (436)
399 COG3634 AhpF Alkyl hydroperoxi 96.2 0.072 1.6E-06 44.4 10.1 106 6-158 353-459 (520)
400 COG1004 Ugd Predicted UDP-gluc 96.2 0.0063 1.4E-07 51.3 4.1 33 8-40 1-33 (414)
401 PF13241 NAD_binding_7: Putati 96.1 0.006 1.3E-07 42.0 3.0 36 184-219 5-40 (103)
402 PRK02705 murD UDP-N-acetylmura 96.1 0.0073 1.6E-07 53.2 4.2 33 9-41 2-34 (459)
403 PRK06129 3-hydroxyacyl-CoA deh 96.1 0.0083 1.8E-07 50.0 4.4 33 8-40 3-35 (308)
404 TIGR00137 gid_trmFO tRNA:m(5)U 96.1 0.0066 1.4E-07 52.5 3.8 32 188-219 2-33 (433)
405 PRK07819 3-hydroxybutyryl-CoA 96.0 0.01 2.2E-07 48.8 4.6 34 8-41 6-39 (286)
406 PF02558 ApbA: Ketopantoate re 96.0 0.011 2.4E-07 43.5 4.3 31 10-40 1-31 (151)
407 PRK09260 3-hydroxybutyryl-CoA 95.9 0.011 2.4E-07 48.7 4.5 33 8-40 2-34 (288)
408 PRK14106 murD UDP-N-acetylmura 95.9 0.013 2.9E-07 51.4 5.2 34 7-40 5-38 (450)
409 PRK08293 3-hydroxybutyryl-CoA 95.9 0.012 2.6E-07 48.5 4.5 33 8-40 4-36 (287)
410 PF01262 AlaDh_PNT_C: Alanine 95.9 0.015 3.3E-07 43.8 4.6 35 6-40 19-53 (168)
411 PRK08268 3-hydroxy-acyl-CoA de 95.8 0.014 3E-07 52.0 4.9 40 1-40 1-40 (507)
412 PF01488 Shikimate_DH: Shikima 95.8 0.024 5.2E-07 41.1 5.4 35 6-40 11-46 (135)
413 TIGR03197 MnmC_Cterm tRNA U-34 95.8 0.029 6.3E-07 48.1 6.8 62 77-151 131-192 (381)
414 PRK06249 2-dehydropantoate 2-r 95.8 0.019 4.1E-07 47.9 5.4 34 7-40 5-38 (313)
415 PRK07236 hypothetical protein; 95.8 0.012 2.7E-07 50.5 4.2 35 185-219 5-39 (386)
416 PRK06035 3-hydroxyacyl-CoA deh 95.7 0.015 3.2E-07 48.1 4.3 33 8-40 4-36 (291)
417 COG1148 HdrA Heterodisulfide r 95.7 0.013 2.7E-07 50.8 3.9 34 186-219 124-157 (622)
418 PRK07530 3-hydroxybutyryl-CoA 95.7 0.017 3.8E-07 47.6 4.7 33 8-40 5-37 (292)
419 KOG4405 GDP dissociation inhib 95.6 0.016 3.5E-07 49.1 4.1 48 5-52 6-53 (547)
420 PF01494 FAD_binding_3: FAD bi 95.6 0.014 3.1E-07 49.0 4.0 32 188-219 3-34 (356)
421 PRK05708 2-dehydropantoate 2-r 95.6 0.024 5.1E-07 47.2 5.1 33 8-40 3-35 (305)
422 PRK06522 2-dehydropantoate 2-r 95.6 0.02 4.3E-07 47.4 4.6 32 9-40 2-33 (304)
423 PF00899 ThiF: ThiF family; I 95.6 0.02 4.4E-07 41.4 4.1 34 7-40 2-36 (135)
424 PRK12921 2-dehydropantoate 2-r 95.5 0.022 4.7E-07 47.2 4.8 30 9-38 2-31 (305)
425 KOG0029 Amine oxidase [Seconda 95.5 0.018 4E-07 51.0 4.5 40 184-224 13-52 (501)
426 PRK12409 D-amino acid dehydrog 95.5 0.016 3.6E-07 50.1 4.1 33 187-219 2-34 (410)
427 PRK05808 3-hydroxybutyryl-CoA 95.5 0.02 4.4E-07 47.0 4.4 33 8-40 4-36 (282)
428 PRK06130 3-hydroxybutyryl-CoA 95.5 0.024 5.2E-07 47.2 4.9 34 7-40 4-37 (311)
429 PLN02545 3-hydroxybutyryl-CoA 95.5 0.022 4.8E-07 47.1 4.6 33 8-40 5-37 (295)
430 PRK04148 hypothetical protein; 95.5 0.016 3.5E-07 41.6 3.2 34 7-41 17-50 (134)
431 PRK06719 precorrin-2 dehydroge 95.4 0.021 4.5E-07 42.5 3.9 35 183-217 10-44 (157)
432 PRK08163 salicylate hydroxylas 95.4 0.019 4.2E-07 49.4 4.3 34 186-219 4-37 (396)
433 PF01593 Amino_oxidase: Flavin 95.4 0.017 3.8E-07 49.7 4.0 40 99-148 225-264 (450)
434 PRK11064 wecC UDP-N-acetyl-D-m 95.4 0.022 4.8E-07 49.5 4.5 33 8-40 4-36 (415)
435 TIGR02352 thiamin_ThiO glycine 95.4 0.048 1E-06 45.7 6.3 62 77-151 133-195 (337)
436 PLN02852 ferredoxin-NADP+ redu 95.4 0.024 5.3E-07 50.1 4.6 35 185-219 25-61 (491)
437 PTZ00188 adrenodoxin reductase 95.3 0.033 7.1E-07 49.0 5.1 35 185-219 38-73 (506)
438 TIGR01470 cysG_Nterm siroheme 95.3 0.026 5.7E-07 44.0 4.1 36 184-219 7-42 (205)
439 PRK06847 hypothetical protein; 95.3 0.023 5E-07 48.5 4.2 34 186-219 4-37 (375)
440 COG1635 THI4 Ribulose 1,5-bisp 95.3 0.03 6.5E-07 43.6 4.2 37 183-219 27-63 (262)
441 PF13478 XdhC_C: XdhC Rossmann 95.3 0.019 4.1E-07 41.6 3.0 32 10-41 1-32 (136)
442 PRK06718 precorrin-2 dehydroge 95.2 0.025 5.5E-07 44.0 3.9 35 184-218 8-42 (202)
443 PRK11883 protoporphyrinogen ox 95.2 0.022 4.9E-07 49.8 4.0 33 187-219 1-35 (451)
444 PTZ00082 L-lactate dehydrogena 95.2 0.043 9.3E-07 45.9 5.4 36 6-41 5-41 (321)
445 TIGR00518 alaDH alanine dehydr 95.2 0.034 7.4E-07 47.5 4.9 35 6-40 166-200 (370)
446 PRK07233 hypothetical protein; 95.2 0.021 4.5E-07 49.7 3.8 32 188-219 1-32 (434)
447 PRK05868 hypothetical protein; 95.2 0.022 4.8E-07 48.8 3.8 33 187-219 2-34 (372)
448 PF01266 DAO: FAD dependent ox 95.2 0.025 5.4E-07 47.5 4.1 32 188-219 1-32 (358)
449 PRK14619 NAD(P)H-dependent gly 95.2 0.037 8.1E-07 46.1 5.0 35 6-40 3-37 (308)
450 PRK06753 hypothetical protein; 95.2 0.024 5.1E-07 48.4 3.9 32 188-219 2-33 (373)
451 PF02254 TrkA_N: TrkA-N domain 95.1 0.028 6.1E-07 39.3 3.6 31 10-40 1-31 (116)
452 PRK08229 2-dehydropantoate 2-r 95.1 0.037 8E-07 46.7 4.8 33 8-40 3-35 (341)
453 cd05292 LDH_2 A subgroup of L- 95.1 0.037 8E-07 46.1 4.7 33 9-41 2-36 (308)
454 PRK12439 NAD(P)H-dependent gly 95.1 0.041 8.9E-07 46.5 5.0 39 1-40 1-39 (341)
455 PLN00093 geranylgeranyl diphos 95.1 0.061 1.3E-06 47.3 6.2 35 185-219 38-72 (450)
456 PRK14620 NAD(P)H-dependent gly 95.0 0.038 8.1E-07 46.4 4.7 32 9-40 2-33 (326)
457 TIGR03026 NDP-sugDHase nucleot 95.0 0.03 6.4E-07 48.7 4.2 33 9-41 2-34 (411)
458 PRK06475 salicylate hydroxylas 95.0 0.026 5.7E-07 48.7 3.8 33 187-219 3-35 (400)
459 TIGR01763 MalateDH_bact malate 95.0 0.045 9.7E-07 45.5 5.0 34 8-41 2-36 (305)
460 PRK11259 solA N-methyltryptoph 95.0 0.027 5.9E-07 48.0 3.9 33 187-219 4-36 (376)
461 PRK14618 NAD(P)H-dependent gly 95.0 0.044 9.6E-07 46.0 5.0 34 7-40 4-37 (328)
462 TIGR02354 thiF_fam2 thiamine b 95.0 0.04 8.7E-07 42.8 4.4 34 7-40 21-55 (200)
463 PF00056 Ldh_1_N: lactate/mala 95.0 0.052 1.1E-06 39.6 4.7 33 8-40 1-36 (141)
464 PRK07045 putative monooxygenas 95.0 0.028 6.2E-07 48.3 3.9 33 187-219 6-38 (388)
465 COG0654 UbiH 2-polyprenyl-6-me 95.0 0.03 6.5E-07 48.2 4.0 33 187-219 3-35 (387)
466 PRK06567 putative bifunctional 94.9 0.033 7.2E-07 52.9 4.4 36 184-219 381-416 (1028)
467 PLN02268 probable polyamine ox 94.9 0.03 6.5E-07 48.9 3.9 33 187-219 1-33 (435)
468 PRK00066 ldh L-lactate dehydro 94.9 0.059 1.3E-06 45.0 5.3 37 5-41 4-42 (315)
469 PF03446 NAD_binding_2: NAD bi 94.9 0.047 1E-06 40.9 4.3 33 8-40 2-34 (163)
470 TIGR02032 GG-red-SF geranylger 94.9 0.033 7.2E-07 45.5 3.9 32 188-219 2-33 (295)
471 PRK00094 gpsA NAD(P)H-dependen 94.8 0.041 8.9E-07 46.0 4.4 33 8-40 2-34 (325)
472 PRK07364 2-octaprenyl-6-methox 94.8 0.047 1E-06 47.3 4.9 34 186-219 18-51 (415)
473 PF07992 Pyr_redox_2: Pyridine 94.8 0.035 7.5E-07 42.7 3.7 32 188-219 1-32 (201)
474 TIGR01377 soxA_mon sarcosine o 94.8 0.035 7.5E-07 47.5 3.9 32 188-219 2-33 (380)
475 PRK07588 hypothetical protein; 94.8 0.035 7.5E-07 47.8 3.9 32 188-219 2-33 (391)
476 cd01075 NAD_bind_Leu_Phe_Val_D 94.7 0.069 1.5E-06 41.5 5.1 34 7-40 28-61 (200)
477 PRK15116 sulfur acceptor prote 94.7 0.053 1.1E-06 44.0 4.6 35 7-41 30-65 (268)
478 PRK04690 murD UDP-N-acetylmura 94.7 0.047 1E-06 48.3 4.6 34 7-40 8-41 (468)
479 TIGR02964 xanthine_xdhC xanthi 94.7 0.063 1.4E-06 43.1 4.9 36 6-41 99-134 (246)
480 cd01080 NAD_bind_m-THF_DH_Cycl 94.7 0.069 1.5E-06 40.2 4.8 34 6-39 43-77 (168)
481 cd05311 NAD_bind_2_malic_enz N 94.7 0.064 1.4E-06 42.5 4.9 35 6-40 24-61 (226)
482 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.7 0.044 9.4E-07 48.8 4.3 34 7-40 5-38 (503)
483 cd00401 AdoHcyase S-adenosyl-L 94.7 0.057 1.2E-06 46.6 4.9 34 7-40 202-235 (413)
484 PRK06184 hypothetical protein; 94.6 0.043 9.4E-07 48.9 4.3 33 187-219 4-36 (502)
485 PRK09424 pntA NAD(P) transhydr 94.6 0.055 1.2E-06 48.0 4.8 35 6-40 164-198 (509)
486 PRK07208 hypothetical protein; 94.6 0.042 9E-07 48.7 4.1 34 186-219 4-37 (479)
487 PRK08773 2-octaprenyl-3-methyl 94.6 0.038 8.1E-07 47.6 3.7 34 186-219 6-39 (392)
488 COG0686 Ald Alanine dehydrogen 94.6 0.035 7.6E-07 45.4 3.2 34 7-40 168-201 (371)
489 PRK09126 hypothetical protein; 94.6 0.038 8.2E-07 47.5 3.6 33 187-219 4-36 (392)
490 PLN02353 probable UDP-glucose 94.5 0.054 1.2E-06 47.8 4.5 33 8-40 2-36 (473)
491 TIGR02360 pbenz_hydroxyl 4-hyd 94.5 0.046 9.9E-07 47.1 4.0 33 187-219 3-35 (390)
492 TIGR01988 Ubi-OHases Ubiquinon 94.5 0.041 8.8E-07 47.1 3.7 32 188-219 1-32 (385)
493 COG0665 DadA Glycine/D-amino a 94.5 0.051 1.1E-06 46.5 4.2 34 186-219 4-37 (387)
494 PRK08013 oxidoreductase; Provi 94.4 0.042 9.2E-07 47.5 3.6 33 187-219 4-36 (400)
495 PRK15057 UDP-glucose 6-dehydro 94.4 0.057 1.2E-06 46.5 4.3 32 9-41 2-33 (388)
496 PRK07531 bifunctional 3-hydrox 94.4 0.065 1.4E-06 47.7 4.8 33 8-40 5-37 (495)
497 PRK07494 2-octaprenyl-6-methox 94.4 0.042 9.1E-07 47.2 3.5 33 187-219 8-40 (388)
498 PRK06223 malate dehydrogenase; 94.4 0.073 1.6E-06 44.3 4.8 34 8-41 3-37 (307)
499 COG0771 MurD UDP-N-acetylmuram 94.4 0.058 1.3E-06 46.9 4.3 37 6-42 6-42 (448)
500 PF01488 Shikimate_DH: Shikima 94.4 0.08 1.7E-06 38.3 4.5 37 183-219 9-46 (135)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=7.5e-37 Score=267.51 Aligned_cols=209 Identities=35% Similarity=0.582 Sum_probs=171.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc---------CCCCCeEEecccccccCCCCCCCCCCCCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK---------YSYDRLRLHLAKQFCQLPHLPFPSSYPMFV 78 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (255)
++|+|||||++||++|..|.+.|.+++++|+.+.+||.|.+ .+|+.+.++.+..++.|+++++++.++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 79999999999999999999999999999999999999974 358889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCC---CCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 025254 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (255)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~ 155 (255)
+..++.+|+..+++++++..+++++++|+++++.++ .+.|.|++.+.. +..+ -.+|.||+|+|.++.|++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g----~~~~-~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG----KEET-EEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT----EEEE-EEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC----eEEE-EEeCeEEEcCCCcCCCCCCh
Confidence 999999999999999999999999999999998753 257999876432 3355 67999999999999999995
Q ss_pred --CCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 156 --IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 156 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
+||.+.| .|.++|+.+|.....+.+|+|+|||+|.||+|+|.+++....+|++..|++.+++|+..
T Consensus 157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~ 224 (531)
T PF00743_consen 157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYW 224 (531)
T ss_dssp ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------
T ss_pred hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccc
Confidence 9999999 99999999999988899999999999999999999999999999999999999999864
No 2
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=249.21 Aligned_cols=210 Identities=34% Similarity=0.600 Sum_probs=192.8
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCC-eEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHH
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (255)
...+||+|||||++|+++|..|.+.|.+ ++|+|++..+||.|..++|+.+.++.+...+.|+..+++ +...+++..+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence 3578999999999999999999999998 999999999999999999999999999999999999987 44556666668
Q ss_pred HHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 025254 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (255)
Q Consensus 84 ~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~ 163 (255)
.+|+.++++++++...+.+++.|..+..+++++.|+|++.++.. .+ +.+|+||+|||.++.|++|.++|.+.|
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~-~~a~~vV~ATG~~~~P~iP~~~G~~~f- 157 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GE-LTADFVVVATGHLSEPYIPDFAGLDEF- 157 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----ee-EecCEEEEeecCCCCCCCCCCCCccCC-
Confidence 89999999999999888999999999998877899999988632 44 679999999999999999999999999
Q ss_pred cCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
.+..+|+.++.....+.+|+|+|||+|+||+|++..|.+.|++|+++.|++.+++|+..
T Consensus 158 -----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~ 216 (443)
T COG2072 158 -----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPL 216 (443)
T ss_pred -----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccc
Confidence 99999999999999999999999999999999999999999999999999988888655
No 3
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=3.2e-33 Score=241.74 Aligned_cols=202 Identities=26% Similarity=0.439 Sum_probs=178.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccC--------------------CCCCeEEecccccccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------------SYDRLRLHLAKQFCQL 65 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~ 65 (255)
..++|+|||||++||++|..|++.|.+|+|+|+.+.+||.|.+. +|..++++.+...+.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 36899999999999999999999999999999999999999652 4677788888888988
Q ss_pred CCCCCCCC-------CCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEee
Q 025254 66 PHLPFPSS-------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (255)
Q Consensus 66 ~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~ 138 (255)
+++++... .+.|++..++.+|+.++++++++..+++++++|++++..+ +.|.|++.+... ...+ ..|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~---~~~~-~~~ 162 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG---FSKD-EIF 162 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC---ceEE-EEc
Confidence 88887542 3568999999999999999999987779999999999865 789998865321 2246 689
Q ss_pred CEEEEeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEec
Q 025254 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (255)
Q Consensus 139 d~vViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~ 218 (255)
|.||+|+|+.+.|.+|.+||.+.| .|..+|+..++....+.+++|+|||+|.+|+|+|..|...+.+|++++|+
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 999999999999999999999999 99999999999888889999999999999999999999999999999997
Q ss_pred C
Q 025254 219 P 219 (255)
Q Consensus 219 ~ 219 (255)
+
T Consensus 237 ~ 237 (461)
T PLN02172 237 S 237 (461)
T ss_pred c
Confidence 6
No 4
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-31 Score=227.65 Aligned_cols=200 Identities=35% Similarity=0.563 Sum_probs=181.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccC--------C-CCCeEEecccccccCCCCCCCCCCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPMF 77 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (255)
.++|+|||||+|||.+|+.|.+.|.+++++||..++||.|.+. . |..++++.+++++.++++++++..+.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 6899999999999999999999999999999999999999987 5 999999999999999999999986655
Q ss_pred -CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCC
Q 025254 78 -VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156 (255)
Q Consensus 78 -~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~ 156 (255)
++..++.+||.++++++++...++++++|..++.... +.|.|.+.+..++ +.. .-||.|++|||++..|++|.+
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~---~~~-~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ---IEE-EIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc---eeE-EEeeEEEEcccCcCCCCCCcC
Confidence 8888999999999999999988899999989888652 6999999886432 246 779999999999877999999
Q ss_pred CC--ccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEe
Q 025254 157 RG--LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217 (255)
Q Consensus 157 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r 217 (255)
+| .+.| .|.++|+.+|.....+.+++|+|||.|.||+|++..++....+|.+..+
T Consensus 161 ~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399|consen 161 PGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred CCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence 88 6688 9999999999999999999999999999999999999999888887764
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.97 E-value=5.9e-31 Score=205.74 Aligned_cols=190 Identities=34% Similarity=0.597 Sum_probs=134.4
Q ss_pred EEECCCHHHHHHHHHHhhCCCC-eEEEeccCCCCcccccCCCCCeEEeccccc---ccCCCCC---CC-----CCCCCCC
Q 025254 11 IMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLP---FP-----SSYPMFV 78 (255)
Q Consensus 11 vIIG~G~~Gl~~a~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~-----~~~~~~~ 78 (255)
+|||||++||++|..|.++|.+ ++|+|+++.+||.|... ++...+..+..+ +.++.+. +. .....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 99999999999999841 211111112111 1111110 00 0124568
Q ss_pred CHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCC
Q 025254 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (255)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g 158 (255)
+..++.+|+.++++++++.+ +++++|+++++.+ +.|.|++.++ .+ ++||+||+|||..+.|.+|.++|
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i--~~~~~V~~v~~~~--~~w~v~~~~~-------~~-~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEI--RFNTRVESVRRDG--DGWTVTTRDG-------RT-IRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGE--ETS--EEEEEEET--TTEEEEETTS--------E-EEEEEEEE---SSCSB---S-TT
T ss_pred CHHHHHHHHHHHHhhcCccc--ccCCEEEEEEEec--cEEEEEEEec-------ce-eeeeeEEEeeeccCCCCcccccc
Confidence 88999999999999999875 9999999999997 6699999885 57 89999999999988999999988
Q ss_pred ccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCce
Q 025254 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPAC 221 (255)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~ 221 (255)
.. ....+|+..+.......+++|+|||+|.||+|++..|.+.|.+|+++.|++.|
T Consensus 148 -~~-------~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 148 -SA-------FRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp -GG-------CSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred -cc-------ccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 22 23678998888777788999999999999999999999999999999999844
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.91 E-value=6.8e-23 Score=169.43 Aligned_cols=174 Identities=25% Similarity=0.389 Sum_probs=131.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (255)
+||+|||||++|+++|..|.+.|.+|+|||+.. .||.|.... .+..++. ++......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPG------FPEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCC------CCCCCChHHHHHHH
Confidence 589999999999999999999999999999986 555443110 0001111 11123456888899
Q ss_pred HHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccCCC
Q 025254 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT 167 (255)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~~~ 167 (255)
.+.++++++.+ +. .+|++++..+ +.|.+.+.++ .+ +++|+||+|+| +.|..|.+||...+
T Consensus 64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~-------~~-~~~d~liiAtG--~~~~~~~i~g~~~~----- 123 (300)
T TIGR01292 64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG-------KE-YTAKAVIIATG--ASARKLGIPGEDEF----- 123 (300)
T ss_pred HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC-------CE-EEeCEEEECCC--CCcccCCCCChhhc-----
Confidence 99999988775 66 7999998865 6777777543 57 99999999999 56777888887655
Q ss_pred CCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+..++...........+++++|||+|.+|+|++..+.+.+.+|+++.|.+
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 444444333333334467899999999999999999999999999999987
No 7
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-22 Score=166.17 Aligned_cols=174 Identities=25% Similarity=0.390 Sum_probs=136.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCC-eEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCC---CCHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF---VSRAQ 82 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 82 (255)
.+||+||||||+||+||.++.+.+.+ ++|+|+.. .||..... ...+.++.+ ....+
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~-------------------~~venypg~~~~~~g~~ 62 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKT-------------------TDVENYPGFPGGILGPE 62 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccc-------------------eeecCCCCCccCCchHH
Confidence 58999999999999999999999998 56665543 44321100 011233333 44678
Q ss_pred HHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccc
Q 025254 83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF 162 (255)
Q Consensus 83 ~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~ 162 (255)
+.+.+.+.+..+++.. .. ..|.+++... +.|.|.+.+ .+ +++++||+||| ..+..|.+|+..+|
T Consensus 63 L~~~~~~~a~~~~~~~--~~-~~v~~v~~~~--~~F~v~t~~--------~~-~~ak~vIiAtG--~~~~~~~~~~e~e~ 126 (305)
T COG0492 63 LMEQMKEQAEKFGVEI--VE-DEVEKVELEG--GPFKVKTDK--------GT-YEAKAVIIATG--AGARKLGVPGEEEF 126 (305)
T ss_pred HHHHHHHHHhhcCeEE--EE-EEEEEEeecC--ceEEEEECC--------Ce-EEEeEEEECcC--CcccCCCCCcchhh
Confidence 8888888888888764 33 6777777764 388888877 56 89999999999 66778888887788
Q ss_pred ccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeec
Q 025254 163 CSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWR 224 (255)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~ 224 (255)
.+..++.+..++. .+.+++++|||+|.+|+|.|..|.+.+.+|++++|++ .+.+
T Consensus 127 ------~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~-~~ra 180 (305)
T COG0492 127 ------EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD-EFRA 180 (305)
T ss_pred ------cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc-ccCc
Confidence 8888888888887 7788999999999999999999999999999999998 4444
No 8
>PRK10262 thioredoxin reductase; Provisional
Probab=99.90 E-value=4e-22 Score=166.48 Aligned_cols=176 Identities=18% Similarity=0.304 Sum_probs=132.1
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
++.+||+||||||+|+++|..|++.|++++++|+. ..||.+... ..++.++. .+...+..++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~----------~~~~~~~~------~~~~~~~~~~~ 66 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT----------TEVENWPG------DPNDLTGPLLM 66 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC----------ceECCCCC------CCCCCCHHHHH
Confidence 45799999999999999999999999999999965 456543211 00111111 12234556778
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~ 164 (255)
+++.+.+..++... +.+ +|++++..+ +.|.++... .. +.||+||+||| +.|..|++||.+.+
T Consensus 67 ~~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~--------~~-~~~d~vilAtG--~~~~~~~i~g~~~~-- 128 (321)
T PRK10262 67 ERMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS--------GE-YTCDALIIATG--ASARYLGLPSEEAF-- 128 (321)
T ss_pred HHHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC--------CE-EEECEEEECCC--CCCCCCCCCCHHHc--
Confidence 88888888877643 444 677787755 667776532 46 89999999999 66788889997766
Q ss_pred CCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+..++...........+++++|||+|.+|+|+|..|.+.+.+|+++.|++
T Consensus 129 ----~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 129 ----KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred ----CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 566566655555445578999999999999999999999999999999987
No 9
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.90 E-value=6.8e-22 Score=174.68 Aligned_cols=176 Identities=19% Similarity=0.270 Sum_probs=136.5
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
...+||+||||||+|+++|.+|++.|.+|+|+++. +||.|.... .+..+. . ..+....++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-------------~~~~~~---~-~~~~~~~~l~ 269 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-------------GIENFI---S-VPETEGPKLA 269 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-------------cccccC---C-CCCCCHHHHH
Confidence 34689999999999999999999999999999863 777664210 000000 0 1134567889
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~ 164 (255)
+++.+.++++++.. +.+++|+++...+ +.+.|.+.++ .. +.+|.||+||| +.+..+++||...+
T Consensus 270 ~~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g-------~~-i~a~~vViAtG--~~~r~~~ipG~~~~-- 333 (517)
T PRK15317 270 AALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG-------AV-LKAKTVILATG--ARWRNMNVPGEDEY-- 333 (517)
T ss_pred HHHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCCHHHh--
Confidence 99999999998766 8899999998865 6777877553 57 89999999999 55677888887666
Q ss_pred CCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+..++.....+.....+++++|||+|.+|+|+|..|...+.+|+++.+.+
T Consensus 334 ----~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 334 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred ----cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 555555444444344568999999999999999999999999999999987
No 10
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.89 E-value=7.3e-22 Score=175.62 Aligned_cols=174 Identities=21% Similarity=0.398 Sum_probs=130.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..+||+||||||+|+++|..|++.|++|+|+|+.. +||.+.... ....++. .......++.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~----------~i~~~pg-------~~~~~~~~l~~ 64 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITS----------EVVNYPG-------ILNTTGPELMQ 64 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEecc----------ccccCCC-------CcCCCHHHHHH
Confidence 35899999999999999999999999999999964 666432110 0000111 01234567888
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
++.+.++++++. ..+++|++++..+ ..+.|.+.+ .. +.+++||+||| +.|..|+++|.+.+
T Consensus 65 ~l~~~~~~~gv~---~~~~~V~~i~~~~--~~~~V~~~~--------g~-~~a~~lVlATG--a~p~~~~ipG~~~~--- 125 (555)
T TIGR03143 65 EMRQQAQDFGVK---FLQAEVLDVDFDG--DIKTIKTAR--------GD-YKTLAVLIATG--ASPRKLGFPGEEEF--- 125 (555)
T ss_pred HHHHHHHHcCCE---EeccEEEEEEecC--CEEEEEecC--------CE-EEEeEEEECCC--CccCCCCCCCHHHh---
Confidence 888888888876 3477899988754 456666644 45 78999999999 66778889997665
Q ss_pred CCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+..++...........+++++|||+|.+|+|+|..+.+.|.+|+++.|.+
T Consensus 126 ---~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 126 ---TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred ---CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 555444443333344568999999999999999999999999999999987
No 11
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.88 E-value=3.2e-22 Score=171.46 Aligned_cols=201 Identities=15% Similarity=0.183 Sum_probs=129.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCCCCCeEEeccccccc-CC----CCCCCCCCCCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ-LP----HLPFPSSYPMFVS 79 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~ 79 (255)
..+|++|||+||+|..+|..++++|.+|+++|+...+|| +-+..+.+.-.+......+. +. .+......+ -.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id 81 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KID 81 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC-CcC
Confidence 469999999999999999999999999999999976776 44444444332222222211 11 011111110 122
Q ss_pred HHHHHHHHHH-----------HHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 80 RAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 80 ~~~~~~~l~~-----------~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
..++.+..++ +.+..++++ ..+ ...-+ +..+|.+... .. .+ ++++++|+|||
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~v--i~G-~a~f~------~~~~v~V~~~-~~----~~-~~a~~iiIATG-- 144 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDV--IRG-EARFV------DPHTVEVTGE-DK----ET-ITADNIIIATG-- 144 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEE--EEE-EEEEC------CCCEEEEcCC-Cc----eE-EEeCEEEEcCC--
Confidence 2233333222 233334432 221 22111 1223444432 11 77 99999999999
Q ss_pred CCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccccc
Q 025254 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQV 228 (255)
Q Consensus 149 s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 228 (255)
|+|..|+.++.+.. .++.+.+..... .-|++++|||+|.+|+|+|..++++|.+||+++|.+ +++|.+|.
T Consensus 145 S~p~~~~~~~~~~~--------~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~ 214 (454)
T COG1249 145 SRPRIPPGPGIDGA--------RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDP 214 (454)
T ss_pred CCCcCCCCCCCCCC--------eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCH
Confidence 88999988887643 345555544434 678999999999999999999999999999999999 99998776
Q ss_pred cCCccc
Q 025254 229 WDPQAQ 234 (255)
Q Consensus 229 ~~~~~~ 234 (255)
......
T Consensus 215 ei~~~~ 220 (454)
T COG1249 215 EISKEL 220 (454)
T ss_pred HHHHHH
Confidence 554433
No 12
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.88 E-value=4.3e-21 Score=169.44 Aligned_cols=176 Identities=19% Similarity=0.284 Sum_probs=130.6
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
...+||+||||||+|+++|..|++.|.+|+|+|. .+||.+... . .+..+.. ..+....++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~-~---------~~~~~~~-------~~~~~~~~l~ 270 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT-V---------GIENLIS-------VPYTTGSQLA 270 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-c---------Ccccccc-------cCCCCHHHHH
Confidence 3468999999999999999999999999999975 467654321 0 0000000 0113456788
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~ 164 (255)
+.+.+.++++++.+ +.+++|+++...+ +.+.+.+.++ .. +.+|+||+|+| +.+..|++||...+
T Consensus 271 ~~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g-------~~-i~~d~lIlAtG--a~~~~~~ipG~~~~-- 334 (515)
T TIGR03140 271 ANLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG-------EV-LKAKSVIVATG--ARWRKLGVPGEKEY-- 334 (515)
T ss_pred HHHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEEECCC--CCcCCCCCCCHHHc--
Confidence 88888888888766 8889999998765 5677777553 57 89999999999 55677888886555
Q ss_pred CCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+..++.....+.....+++++|||+|.+|+|+|..|+..+.+|+++.+.+
T Consensus 335 ----~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 335 ----IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred ----CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 333333333323233457899999999999999999999999999999876
No 13
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.88 E-value=1.3e-22 Score=169.30 Aligned_cols=204 Identities=27% Similarity=0.390 Sum_probs=128.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCC-CCeEEEeccCCCCcccccCCC-CCeEEec--ccccccCCCCCCCCC---------
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYSY-DRLRLHL--AKQFCQLPHLPFPSS--------- 73 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g-~~v~lie~~~~~g~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~--------- 73 (255)
.+|+++||.||++|++|..|.+.+ .++..+|+.+.+ .|...+. +...+.. .+.+..+.+...+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999886 899999997755 5776552 3322222 112222211111111
Q ss_pred --------CCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCC--CcEEEEEcccCCCCceeeEEEeeCEEEE
Q 025254 74 --------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGREIEEYYSGRFLVV 143 (255)
Q Consensus 74 --------~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~i~~d~vVi 143 (255)
-..+|++.++.+|+++.+++++..+ +++.+|++|...... ..|.|.+.+..+ +..+ +.|+.||+
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v--~~~~~V~~I~~~~~~~~~~~~V~~~~~~g---~~~~-~~ar~vVl 153 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQV--RYGSEVTSIEPDDDGDEDLFRVTTRDSDG---DGET-YRARNVVL 153 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTE--EESEEEEEEEEEEETTEEEEEEEEEETTS----EEE-EEESEEEE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCce--EECCEEEEEEEecCCCccEEEEEEeecCC---CeeE-EEeCeEEE
Confidence 1135789999999999999987545 999999999988733 258898865222 3377 99999999
Q ss_pred eecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCC--CCCCCeEEEEcCCcCHHHHHHHHhhhcC--eEEEEEecC
Q 025254 144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP 219 (255)
Q Consensus 144 AtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~g~~~~e~a~~l~~~g~--~v~~~~r~~ 219 (255)
|+| ..|.+|.+...... ...++|+.++.... ....++|+|||+|.||+|++..|.+.+. +|+++.|++
T Consensus 154 a~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 154 ATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 999 77888865321111 36799999886642 5578899999999999999999999975 899999999
Q ss_pred ceeecccc
Q 025254 220 ACLWRFEQ 227 (255)
Q Consensus 220 ~~~~~~~~ 227 (255)
.+.|.++
T Consensus 226 -~~~~~d~ 232 (341)
T PF13434_consen 226 -GFFPMDD 232 (341)
T ss_dssp -S-EB---
T ss_pred -ccCCCcc
Confidence 7777544
No 14
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.86 E-value=7e-21 Score=166.51 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=122.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccc-ccCCCCCeEEecc-cccccCCCC-CC-CCCCCCCCCHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLA-KQFCQLPHL-PF-PSSYPMFVSRA 81 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~ 81 (255)
..+||+|||||++|+.+|..|++.|.+|+|||+...+||.| ...+.+...+... ..+..+... .+ ........+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 36899999999999999999999999999999987788865 3333332111100 000000000 00 00001112333
Q ss_pred HHHHH-----------HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 82 QFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 82 ~~~~~-----------l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
++.++ +.+.+.+.++.+ +.+ ++..++ ...+.|...++ +... ++||+||+||| +.
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviATG--s~ 148 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDG-----EVET-LTADKIVIATG--SR 148 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--CC
Confidence 33332 333444555543 433 343332 14555655432 2247 89999999999 77
Q ss_pred CCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
|..|++++... ..++....... ....+++++|||+|.+|+|+|..+.+.|.+|+++++++ +++|..+
T Consensus 149 p~~p~~~~~~~--------~~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d 215 (461)
T PRK05249 149 PYRPPDVDFDH--------PRIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLD 215 (461)
T ss_pred CCCCCCCCCCC--------CeEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCC
Confidence 77777655422 12344433332 23357899999999999999999999999999999998 7777543
No 15
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=9.6e-21 Score=165.65 Aligned_cols=193 Identities=18% Similarity=0.217 Sum_probs=118.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccc-ccCCCCCeEEeccccccc----CCCCCCCCCCCCCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (255)
..+||+||||||+|+++|..|++.|.+|+|+|+.. +||.+ ...+.+...+......+. ...+..... ....+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 46899999999999999999999999999999987 88743 444444322111111111 111111100 112333
Q ss_pred HHHHHHHH-----------HHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 81 AQFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 81 ~~~~~~l~-----------~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
.++.++.. ..+++.++.+ ..+ +++.++. ..+.|...++ + .. ++||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~~~----~~~~v~~~~~--~----~~-~~~d~lViAtG--s 144 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLVDP----NTVRVMTEDG--E----QT-YTAKNIILATG--S 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEccC----CEEEEecCCC--c----EE-EEeCEEEEeCC--C
Confidence 44444433 3344455543 443 4444321 3444443221 1 67 89999999999 5
Q ss_pred CCCCCCCCCccccccCCCCCCc-EEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 150 NPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
.|..| ||.+. .+. +++..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+
T Consensus 145 ~p~~~--pg~~~-------~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~ 212 (462)
T PRK06416 145 RPREL--PGIEI-------DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGED 212 (462)
T ss_pred CCCCC--CCCCC-------CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCC
Confidence 56443 34432 222 333332222 22346899999999999999999999999999999998 7777643
No 16
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.86 E-value=6.9e-21 Score=165.61 Aligned_cols=188 Identities=16% Similarity=0.243 Sum_probs=114.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc-cccCCCCCeEEeccccc----ccCCCCCCCCCCCCCCCHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA 81 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 81 (255)
++||+||||||+|+.+|..|++.|.+|+|+|+.. +||. .+..+.+...+...... .....+..........+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 5899999999999999999999999999999964 7773 33333332111000000 0011111110100011212
Q ss_pred HHHH-----------HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 82 QFIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 82 ~~~~-----------~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
++.+ .+...++..++.+ +.++.+ ..+ .. +|.+.. .. +.||+||+||| ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~----~~~-~~--~v~v~~--------~~-~~~d~vIiAtG--s~ 140 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHAR----FTK-DG--TVEVNG--------RD-YTAPHILIATG--GK 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEE----Ecc-CC--EEEECC--------EE-EEeCEEEEecC--CC
Confidence 2222 2333344445543 555322 111 12 344432 67 89999999999 77
Q ss_pred CCCC-CCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 151 PFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 151 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
|.+| ++||.+.. .....+.. ....+++++|||+|.+|+|+|..+.+.|.+|++++|.+ ++++..+
T Consensus 141 p~~p~~i~g~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d 206 (450)
T TIGR01421 141 PSFPENIPGAELG----------TDSDGFFA-LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFD 206 (450)
T ss_pred CCCCCCCCCCcee----------EcHHHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccC
Confidence 8888 77775421 11222211 22246899999999999999999999999999999998 6776543
No 17
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=9.3e-21 Score=165.67 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=117.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc-cccCCCCCeEEe-cccccc---cCCCCCCCCCCCCCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLH-LAKQFC---QLPHLPFPSSYPMFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~ 80 (255)
.++||+||||||+|+.+|..|++.|.+|+|||+.+.+||. .+..+.+...+. ....+. ....+..... ....+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~ 81 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDI 81 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCH
Confidence 4699999999999999999999999999999998777873 333344332111 000000 0111111000 001222
Q ss_pred HHHHHHHH-----------HHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 81 AQFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 81 ~~~~~~l~-----------~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
..+.++.. ..++..++.+ .. ..+..++ .+.+.|...++ +..+ ++||+||+||| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~~-g~a~~~~----~~~v~v~~~~g-----~~~~-~~~d~lViATG--s 146 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTV--VN-GLGKFTG----GNTLEVTGEDG-----KTTV-IEFDNAIIAAG--S 146 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC-----ceEE-EEcCEEEEeCC--C
Confidence 33333222 2334445553 33 3333322 14444544332 2257 89999999999 6
Q ss_pred CCC-CCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 150 NPF-TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 150 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
.|. +|.+++.. ..++...+... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ +++|..+
T Consensus 147 ~p~~~p~~~~~~---------~~v~~~~~~~~-~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d 214 (471)
T PRK06467 147 RPIQLPFIPHDD---------PRIWDSTDALE-LKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAAD 214 (471)
T ss_pred CCCCCCCCCCCC---------CcEEChHHhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCC
Confidence 665 34444321 12333333222 22346899999999999999999999999999999998 7887654
No 18
>PRK06370 mercuric reductase; Validated
Probab=99.85 E-value=1.4e-20 Score=164.64 Aligned_cols=190 Identities=15% Similarity=0.206 Sum_probs=116.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccc-ccCCCCCeEE-ecccccc---cCCCCCCCCCCCCCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRL-HLAKQFC---QLPHLPFPSSYPMFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 80 (255)
.++||+||||||+|+.+|..|++.|.+|+|+|+.. +||.+ ...+.+...+ .....+. ....+.+........+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 46999999999999999999999999999999974 56532 2222221100 0000000 00011111000001222
Q ss_pred HHHHHHH-----------HHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 81 AQFIEHL-----------DHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 81 ~~~~~~l-----------~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
.++.++. ...+++. ++.+ +.++.+ .+ +..+|.+.+ .+ +++|+||+|||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~-~~------~~~~v~v~~--------~~-~~~d~lViATG-- 142 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHAR-FE------SPNTVRVGG--------ET-LRAKRIFINTG-- 142 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEE-Ec------cCCEEEECc--------EE-EEeCEEEEcCC--
Confidence 3333322 2233333 4443 444332 11 122344432 67 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 149 s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
+.|..|++||.+.. .++...+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..
T Consensus 143 s~p~~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~ 210 (463)
T PRK06370 143 ARAAIPPIPGLDEV--------GYLTNETIFS-LDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPRE 210 (463)
T ss_pred CCCCCCCCCCCCcC--------ceEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCccc
Confidence 78888988887542 2344333332 22347899999999999999999999999999999998 777654
No 19
>PLN02507 glutathione reductase
Probab=99.85 E-value=2.6e-20 Score=163.66 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=118.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEec---------cCCCCccc-ccCCCCCeEEecccccc----cCCCCCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPS 72 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~---------~~~~g~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~ 72 (255)
++||+||||||+|+.+|..++++|.+|+|||+ ...+||.+ ...+++.-.+.....++ ....+....
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 58999999999999999999999999999996 24577743 33444432221111110 001111110
Q ss_pred CCCCCCCHHHHHHH-----------HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEE
Q 025254 73 SYPMFVSRAQFIEH-----------LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (255)
Q Consensus 73 ~~~~~~~~~~~~~~-----------l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~v 141 (255)
....-.+...+.++ +...+...++. ....++..++. ..+.|+..++ ++.+ +.||+|
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd~----~~v~V~~~~g-----~~~~-~~~d~L 171 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVGP----NEVEVTQLDG-----TKLR-YTAKHI 171 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEecC----CEEEEEeCCC-----cEEE-EEcCEE
Confidence 00001222222222 22233334544 33335544432 4566665443 2257 899999
Q ss_pred EEeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCce
Q 025254 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPAC 221 (255)
Q Consensus 142 ViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~ 221 (255)
|+||| +.|..|.+||.+.. ....+... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ +
T Consensus 172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ 237 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA----------ITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-L 237 (499)
T ss_pred EEecC--CCCCCCCCCCccce----------echHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-C
Confidence 99999 77888888875321 12222211 22246899999999999999999999999999999988 6
Q ss_pred eeccc
Q 025254 222 LWRFE 226 (255)
Q Consensus 222 ~~~~~ 226 (255)
+++..
T Consensus 238 ~l~~~ 242 (499)
T PLN02507 238 PLRGF 242 (499)
T ss_pred cCccc
Confidence 66643
No 20
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.85 E-value=4.7e-20 Score=160.21 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=114.1
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC-CCcc-cccCCCCCeEEecccccccCCCCCCCCCCCCCCC-HHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASI-WKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVS-RAQF 83 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 83 (255)
.+||+||||||+|+++|..|++.|.+|+|||+.+. +||. .+..+.+..... ...... .++..... ...+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~------~~~~~~--~~~~~~~~~~~~~ 74 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLL------VAAEKN--LSFEQVMATKNTV 74 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhh------hhhhcC--CCHHHHHHHHHHH
Confidence 58999999999999999999999999999999864 5663 222222211000 000000 01110000 0111
Q ss_pred ----HHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCc
Q 025254 84 ----IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL 159 (255)
Q Consensus 84 ----~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~ 159 (255)
.....+...+.++.. ..+ +...+ + ... |.+.... +... +++|+||+||| +.|..|++||.
T Consensus 75 ~~~~~~~~~~~~~~~gV~~--~~g-~~~~~---~-~~~--v~v~~~~----~~~~-~~~d~vViATG--s~~~~p~i~G~ 138 (438)
T PRK07251 75 TSRLRGKNYAMLAGSGVDL--YDA-EAHFV---S-NKV--IEVQAGD----EKIE-LTAETIVINTG--AVSNVLPIPGL 138 (438)
T ss_pred HHHHHHHHHHHHHhCCCEE--EEE-EEEEc---c-CCE--EEEeeCC----CcEE-EEcCEEEEeCC--CCCCCCCCCCc
Confidence 111122333445442 322 22222 1 133 3333211 1257 89999999999 67888888886
Q ss_pred cccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 160 CSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
+.. . .++....... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ +++|..+
T Consensus 139 ~~~------~-~v~~~~~~~~-~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~ 197 (438)
T PRK07251 139 ADS------K-HVYDSTGIQS-LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREE 197 (438)
T ss_pred CCC------C-cEEchHHHhc-chhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCC
Confidence 533 2 2343333332 22347899999999999999999999999999999998 7777643
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.84 E-value=6.9e-20 Score=159.33 Aligned_cols=188 Identities=18% Similarity=0.223 Sum_probs=118.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC-CCCcccc-cCCCCCeEEecccccccCCCCCCCCCCCCC-CCHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWK-KYSYDRLRLHLAKQFCQLPHLPFPSSYPMF-VSRAQF 83 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 83 (255)
.+||+|||||++|+.+|..|++.|.+|+|||+.+ .+||.+. ..+.+... +...... ...+... .....+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~------l~~~~~~--~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKT------LVHDAQQ--HTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHH------HHHHhcc--CCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999976 4677553 22222110 0000000 0011000 001122
Q ss_pred HHHHHH-----HHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCC
Q 025254 84 IEHLDH-----YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (255)
Q Consensus 84 ~~~l~~-----~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g 158 (255)
.+++.. ..+..++. ....++..++. +.+.|...++ ..+ +.+|+||+||| +.|.+|++||
T Consensus 75 ~~~~~~~~~~~~~~~~gv~---~~~g~~~~i~~----~~~~v~~~~g------~~~-~~~d~lviATG--s~p~~p~i~G 138 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNID---VIDGQAEFINN----HSLRVHRPEG------NLE-IHGEKIFINTG--AQTVVPPIPG 138 (441)
T ss_pred HHHHHHhHHHHHhhcCCcE---EEEEEEEEecC----CEEEEEeCCC------eEE-EEeCEEEEcCC--CcCCCCCCCC
Confidence 222221 11122433 22234544432 4556655442 147 89999999999 7788888988
Q ss_pred ccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
.+.. .+ ++....... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|..+
T Consensus 139 ~~~~------~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~ 198 (441)
T PRK08010 139 ITTT------PG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPRED 198 (441)
T ss_pred ccCC------CC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcC
Confidence 7543 22 333333332 23356899999999999999999999999999999988 7777543
No 22
>PRK06116 glutathione reductase; Validated
Probab=99.84 E-value=3e-20 Score=162.00 Aligned_cols=186 Identities=21% Similarity=0.235 Sum_probs=115.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccc-ccCCCCCeEEecccccc----c-CCCCCCCCCCCCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC----Q-LPHLPFPSSYPMFVS 79 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~-~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~ 79 (255)
..+||+||||||+|+.+|..|++.|.+|+|||+. .+||.+ +..+.+...+.....+. . ...+.+....+ ..+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~ 80 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN-KFD 80 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC-CcC
Confidence 3589999999999999999999999999999996 577743 23333221110000000 0 00011100000 111
Q ss_pred HHHHH-----------HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 80 RAQFI-----------EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 80 ~~~~~-----------~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
...+. +.+.+.+.+.++.+ ..+ +++.++ ..+|++ ++ .. ++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~------~~~v~~-~g-------~~-~~~d~lViATG-- 140 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVD------AHTVEV-NG-------ER-YTADHILIATG-- 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc------CCEEEE-CC-------EE-EEeCEEEEecC--
Confidence 11222 22333344456553 443 454442 123555 22 67 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecc
Q 025254 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRF 225 (255)
Q Consensus 149 s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (255)
+.|.+|+++|.+.. ++...... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .+++.
T Consensus 141 s~p~~p~i~g~~~~----------~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~ 205 (450)
T PRK06116 141 GRPSIPDIPGAEYG----------ITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRG 205 (450)
T ss_pred CCCCCCCCCCccee----------EchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccc
Confidence 77888888875422 23322222 22346899999999999999999999999999999988 55554
No 23
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.84 E-value=1.8e-20 Score=163.98 Aligned_cols=191 Identities=17% Similarity=0.201 Sum_probs=117.2
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccc-cCCCCCeEEecccccccCC---CCCCC-----CCCCCC-
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQLP---HLPFP-----SSYPMF- 77 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~- 77 (255)
+||+||||||+|+.+|..|++.|.+|+|||+.. +||.|. ..+.+...+.......... .+... .++...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999976 777543 2222221111111111110 01000 011100
Q ss_pred CCHHHHHHH-----HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 025254 78 VSRAQFIEH-----LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 78 ~~~~~~~~~-----l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
...+++... +...+++.++++ ..+ ++..+ +..+|.+.++ ... +.+|+||+||| +.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~------~~~~v~v~~g------~~~-~~~~~lIiATG--s~p~ 141 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFK------DPKTVKVDLG------REV-RGAKRFLIATG--ARPA 141 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEc------cCCEEEEcCC------eEE-EEeCEEEEcCC--CCCC
Confidence 111222222 223344555543 333 33322 1234555432 146 89999999999 7788
Q ss_pred CCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 153 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
.|++||.+.. .+++..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ +++|..+
T Consensus 142 ~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d 206 (463)
T TIGR02053 142 IPPIPGLKEA--------GYLTSEEALA-LDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREE 206 (463)
T ss_pred CCCCCCcccC--------ceECchhhhC-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccC
Confidence 8888887543 2333333332 22236899999999999999999999999999999998 7777643
No 24
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.84 E-value=3.4e-20 Score=161.28 Aligned_cols=188 Identities=15% Similarity=0.170 Sum_probs=117.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc-cccCCCCCeEEeccccc----ccCCCCCCCCCCCCCCCH-
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSR- 80 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~- 80 (255)
++||+||||||+|+++|..+++.|.+|+|+|+. .+||. ....+.+...+...... -..+.+..... ..-.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999995 57773 23333332211111000 00111111000 000111
Q ss_pred ----------HHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 81 ----------AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 81 ----------~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
..+.+++...+++.++++ .. .++..++. ..+.+.. + + .. ++||+||+||| +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~v~~----~~v~v~~-~---g----~~-~~~d~lIiATG--s~ 141 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVEL--LE-GRARLVGP----NTVEVLQ-D---G----TT-YTAKKILIAVG--GR 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EE-EEEEEecC----CEEEEec-C---C----eE-EEcCEEEEecC--Cc
Confidence 123344455556666653 33 36655543 2333321 2 1 67 89999999999 77
Q ss_pred CCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 151 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
|..|++||.+.. ....+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .+++..
T Consensus 142 p~~p~i~G~~~~----------~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~ 205 (446)
T TIGR01424 142 PQKPNLPGHELG----------ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGF 205 (446)
T ss_pred CCCCCCCCccce----------echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCccc
Confidence 888888875421 11111111 12347899999999999999999999999999999988 666643
No 25
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.84 E-value=5.2e-20 Score=161.30 Aligned_cols=198 Identities=19% Similarity=0.219 Sum_probs=118.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccc-cCCCCCeEEeccccccc-C---CCCCCCCCCCCCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ-L---PHLPFPSSYPMFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~ 80 (255)
..+||+||||||+|+.+|..|++.|.+|+|+|+. .+||.+. ..+.+...+......+. . ..+....... ..+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~ 80 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGP-ALDF 80 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCC-ccCH
Confidence 4699999999999999999999999999999997 5787553 22222211111000000 0 0111100000 0111
Q ss_pred -------HHHHHHH----HHHHHhcCCCCeeEeccEEEEEEEc---CCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 025254 81 -------AQFIEHL----DHYVSHFNIGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASG 146 (255)
Q Consensus 81 -------~~~~~~l----~~~~~~~~l~~~~~~~~~v~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG 146 (255)
.++.+.+ .+.+++.++. ....+++.++.. +..+.+.|...++ +... ++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~---~~~g~a~~i~~~~~~~~~~~~~v~~~~g-----~~~~-~~~d~lViATG 151 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKID---VFHGIGRILGPSIFSPMPGTVSVETETG-----ENEM-IIPENLLIATG 151 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEeCCCCCcCCceEEEEEeCCC-----ceEE-EEcCEEEEeCC
Confidence 1222222 2334445655 333466666543 1113566665442 1257 89999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCCc-EEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecc
Q 025254 147 ETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRF 225 (255)
Q Consensus 147 ~~s~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (255)
+.|..+ |+.+ . .+. +++..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.+ +++|.
T Consensus 152 --s~p~~~--p~~~-~------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~ 218 (472)
T PRK05976 152 --SRPVEL--PGLP-F------DGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPT 218 (472)
T ss_pred --CCCCCC--CCCC-C------CCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCc
Confidence 556433 2322 1 222 333333322 22346899999999999999999999999999999998 77776
Q ss_pred cc
Q 025254 226 EQ 227 (255)
Q Consensus 226 ~~ 227 (255)
.+
T Consensus 219 ~~ 220 (472)
T PRK05976 219 ED 220 (472)
T ss_pred CC
Confidence 43
No 26
>PRK14694 putative mercuric reductase; Provisional
Probab=99.84 E-value=1.2e-19 Score=158.77 Aligned_cols=193 Identities=16% Similarity=0.186 Sum_probs=119.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc-CCCCCeEEeccccccc-CCCCCCCCCCC---CCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPHLPFPSSYP---MFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~ 80 (255)
.++||+|||||++|+.+|..|++.|.+|+|||+. .+||+|.. .+.+.-.+......+. .....+....+ .-.+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 83 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDR 83 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCH
Confidence 4799999999999999999999999999999997 58887642 2211111000000000 00001000000 01233
Q ss_pred HHHHHHHHHHHHh------------c-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 81 AQFIEHLDHYVSH------------F-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 81 ~~~~~~l~~~~~~------------~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
.++.++..+.... . ++. ....+++.++. +.+.|++.++ +..+ ++||+||+|||
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~---~~~g~v~~id~----~~~~V~~~~g-----~~~~-~~~d~lViATG- 149 (468)
T PRK14694 84 SALLAQQQARVEELRESKYQSILRENAAIT---VLNGEARFVDE----RTLTVTLNDG-----GEQT-VHFDRAFIGTG- 149 (468)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcCCCeE---EEEEEEEEecC----CEEEEEecCC-----CeEE-EECCEEEEeCC-
Confidence 3444333332221 1 222 33335666632 5677877653 2257 99999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecc
Q 025254 148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRF 225 (255)
Q Consensus 148 ~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (255)
+.|..|++||.+.. ..++..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+. +++|.
T Consensus 150 -s~p~~p~i~G~~~~--------~~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~ 215 (468)
T PRK14694 150 -ARPAEPPVPGLAET--------PYLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQ 215 (468)
T ss_pred -CCCCCCCCCCCCCC--------ceEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCC
Confidence 78888998887542 2233222211 2234689999999999999999999999999999874 45554
No 27
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.83 E-value=8.6e-20 Score=169.60 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=120.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||||||||++|.+|++.|++|+|||+.+.+||...+. .|.|....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------IP~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------IPEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc------------------------CCCCcChHHHHH
Confidence 46899999999999999999999999999999999888875432 122333356677
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.++..|+.+ +.+..+. ..+++.+. .. ..||.|++|||+ ..|..+++||.+.
T Consensus 361 ~~i~~l~~~Gv~f--~~n~~vG----------~dit~~~l-------~~-~~yDAV~LAtGA-~~pr~l~IpG~dl---- 415 (944)
T PRK12779 361 DVVEKIKLLGGRF--VKNFVVG----------KTATLEDL-------KA-AGFWKIFVGTGA-GLPTFMNVPGEHL---- 415 (944)
T ss_pred HHHHHHHhhcCeE--EEeEEec----------cEEeHHHh-------cc-ccCCEEEEeCCC-CCCCcCCCCCCcC----
Confidence 7777788888766 7765441 12444432 34 579999999996 3577788888642
Q ss_pred CCCCCcEEecccCCC---------------CCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeec
Q 025254 166 ATGTGEVIHSTQYKN---------------GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWR 224 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~---------------~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~ 224 (255)
. .++...++.. .....+++|+|||+|.+|+|+|..+.++|.+|+++.|++...+|
T Consensus 416 ---~-GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp 485 (944)
T PRK12779 416 ---L-GVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP 485 (944)
T ss_pred ---c-CcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccc
Confidence 1 2333222211 01225789999999999999999999999999999998633444
No 28
>PRK14727 putative mercuric reductase; Provisional
Probab=99.83 E-value=1.7e-19 Score=158.21 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=117.0
Q ss_pred ccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc-CCCCCeEEecccccc----cCCCCCCCCCCCCCC
Q 025254 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFV 78 (255)
Q Consensus 4 ~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 78 (255)
.+.++|++|||+|++|+.+|..|++.|.+|+++|+...+||.|.. .+.+...+....... ..+...+....+. .
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~-~ 91 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS-I 91 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc-c
Confidence 345799999999999999999999999999999998778997753 223322111111111 1111111111111 1
Q ss_pred CHHHHHHHHHHHHH------------hc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEee
Q 025254 79 SRAQFIEHLDHYVS------------HF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS 145 (255)
Q Consensus 79 ~~~~~~~~l~~~~~------------~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAt 145 (255)
+...+..+...... .. ++.. .. .+. ...+ .+.+.|...++ +..+ ++||+||+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~-G~a---~f~~-~~~v~v~~~~g-----~~~~-~~~d~lViAT 158 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTL--LK-GYA---RFKD-GNTLVVRLHDG-----GERV-LAADRCLIAT 158 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEE--EE-EEE---EEec-CCEEEEEeCCC-----ceEE-EEeCEEEEec
Confidence 22222222111111 11 2221 11 122 1222 25566665443 2257 8999999999
Q ss_pred cCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecc
Q 025254 146 GETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRF 225 (255)
Q Consensus 146 G~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (255)
| +.|.+|++||.+.. ..+...+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+. .+++.
T Consensus 159 G--s~p~~p~i~G~~~~--------~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~ 225 (479)
T PRK14727 159 G--STPTIPPIPGLMDT--------PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFR 225 (479)
T ss_pred C--CCCCCCCCCCcCcc--------ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCc
Confidence 9 78888888886432 1222222111 2234689999999999999999999999999999885 45554
Q ss_pred c
Q 025254 226 E 226 (255)
Q Consensus 226 ~ 226 (255)
.
T Consensus 226 ~ 226 (479)
T PRK14727 226 E 226 (479)
T ss_pred c
Confidence 3
No 29
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.83 E-value=4e-20 Score=162.54 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=115.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC--------CCCcc-cccCCCCCeEEeccccccc-C----CCCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASI-WKKYSYDRLRLHLAKQFCQ-L----PHLPFP 71 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~--------~~g~~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~ 71 (255)
..+||+||||||+|+.+|..|++.|.+|+|||+.. .+||. -+..+++...+........ + ..+.+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~ 83 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK 83 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence 35899999999999999999999999999999732 36663 3333343221111111000 0 011111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccE---EEEEE---EcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEee
Q 025254 72 SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRS---VESAS---YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS 145 (255)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~---v~~i~---~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAt 145 (255)
...-.+..++.+++...++.++... ....+ |+-+. ... +..+|.+.+.. +... ++||+||+||
T Consensus 84 --~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~--~~~~v~v~~~~----~~~~-i~~d~lIIAT 152 (499)
T PTZ00052 84 --TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLK--DEHTVSYGDNS----QEET-ITAKYILIAT 152 (499)
T ss_pred --CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEc--cCCEEEEeeCC----CceE-EECCEEEEec
Confidence 0112455666766666665543221 11111 11111 111 22334443221 1267 9999999999
Q ss_pred cCCCCCCCCC-CCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeec
Q 025254 146 GETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWR 224 (255)
Q Consensus 146 G~~s~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~ 224 (255)
| +.|..|. +||.... .+...+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+. .+++
T Consensus 153 G--s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~ 218 (499)
T PTZ00052 153 G--GRPSIPEDVPGAKEY---------SITSDDIFS-LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLR 218 (499)
T ss_pred C--CCCCCCCCCCCccce---------eecHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccc
Confidence 9 7777774 7775432 122222222 2224679999999999999999999999999999874 3455
Q ss_pred cc
Q 025254 225 FE 226 (255)
Q Consensus 225 ~~ 226 (255)
..
T Consensus 219 ~~ 220 (499)
T PTZ00052 219 GF 220 (499)
T ss_pred cC
Confidence 43
No 30
>PRK13748 putative mercuric reductase; Provisional
Probab=99.82 E-value=2.1e-19 Score=160.80 Aligned_cols=192 Identities=18% Similarity=0.168 Sum_probs=116.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccc-cCCCCCeEEecccccc-cCCCC----CCCCCCCCCCCH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC-QLPHL----PFPSSYPMFVSR 80 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~ 80 (255)
.+||+||||||+|+.+|..|++.|.+|+|||+. .+||.|. ..+.+...+....... ..... ......+ ..+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 175 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP-TIDR 175 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCC-ccCH
Confidence 589999999999999999999999999999998 6888664 2233322111111000 00001 1110111 1233
Q ss_pred HHHHHHHHHHH------------Hhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 81 AQFIEHLDHYV------------SHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 81 ~~~~~~l~~~~------------~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
..+.++..+.. ... ++. ....+++.++ ...+.|...++ +..+ ++||+||+|||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviAtG- 241 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAIT---VLHGEARFKD----DQTLIVRLNDG-----GERV-VAFDRCLIATG- 241 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeE---EEEEEEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC-
Confidence 34433322222 111 222 2223444332 24555655432 2257 99999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 148 ~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
+.|.+|++||.+.. ..+...+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.|.. +++..
T Consensus 242 -s~p~~p~i~g~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~ 308 (561)
T PRK13748 242 -ASPAVPPIPGLKET--------PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFRE 308 (561)
T ss_pred -CCCCCCCCCCCCcc--------ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--ccccc
Confidence 77888888886542 1222222111 22346899999999999999999999999999999853 55543
No 31
>PLN02546 glutathione reductase
Probab=99.82 E-value=5.4e-20 Score=162.67 Aligned_cols=188 Identities=15% Similarity=0.225 Sum_probs=114.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEecc---------CCCCc-ccccCCCCCeEEeccccccc----CCCCCCC-
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE---------NCYAS-IWKKYSYDRLRLHLAKQFCQ----LPHLPFP- 71 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~---------~~~g~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~- 71 (255)
++||+|||+|++|+.+|..++++|.+|+|+|+. ..+|| +-+..+.+.-.+........ ...+...
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 589999999999999999999999999999962 33555 22223322221111111100 0111110
Q ss_pred -----CCCCCCCC-----HHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEE
Q 025254 72 -----SSYPMFVS-----RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (255)
Q Consensus 72 -----~~~~~~~~-----~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~v 141 (255)
.+|..... ...+.+++.+.+++.++.+ . ..+++.++. . +|.+.+ .. +.||+|
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~--i-~G~a~~vd~----~--~V~v~G--------~~-~~~D~L 220 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL--I-EGRGKIVDP----H--TVDVDG--------KL-YTARNI 220 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--E-EeEEEEccC----C--EEEECC--------EE-EECCEE
Confidence 01111111 1122233444444555542 3 334444432 2 244422 67 899999
Q ss_pred EEeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCce
Q 025254 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPAC 221 (255)
Q Consensus 142 ViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~ 221 (255)
|+||| +.|..|++||.+.. +....... ....+++++|||+|.+|+|+|..+...|.+|+++.+.+ +
T Consensus 221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~ 286 (558)
T PLN02546 221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-K 286 (558)
T ss_pred EEeCC--CCCCCCCCCChhhc----------cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-c
Confidence 99999 78888888886432 22222221 22357899999999999999999999999999999988 7
Q ss_pred eeccc
Q 025254 222 LWRFE 226 (255)
Q Consensus 222 ~~~~~ 226 (255)
+++..
T Consensus 287 il~~~ 291 (558)
T PLN02546 287 VLRGF 291 (558)
T ss_pred ccccc
Confidence 76654
No 32
>PTZ00058 glutathione reductase; Provisional
Probab=99.82 E-value=4.4e-19 Score=156.91 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=115.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCCCCCeEEeccccccc----CCCCCCCCCCCCCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (255)
.++||+|||||++|+.+|..+++.|.+|+|||+.. +|| +-+..+.+...+........ ...+..... .-.+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~--~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQ--FSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCcc--CccCH
Confidence 36899999999999999999999999999999974 666 33333333322211111111 011111100 01122
Q ss_pred HHHH-----------HHHHHHHHhcCCCCeeEecc-EEEE---EE-----E------cCCCCcEEEEEc---ccCCCCce
Q 025254 81 AQFI-----------EHLDHYVSHFNIGPSIRYQR-SVES---AS-----Y------DEATNMWNVKAS---NLLSPGRE 131 (255)
Q Consensus 81 ~~~~-----------~~l~~~~~~~~l~~~~~~~~-~v~~---i~-----~------~~~~~~~~v~~~---~~~~~~~~ 131 (255)
..+. +.+.+.++..+++. ..+. ++++ +. . ..+.+..+|... ...++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--- 198 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC---
Confidence 2222 22223334445543 3332 1111 00 0 000122223210 00111
Q ss_pred eeEEEeeCEEEEeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCe
Q 025254 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (255)
Q Consensus 132 ~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~ 211 (255)
.+ ++||+||+||| +.|..|+++|.+. .+.+.++.. .. .+++++|||+|.+|+|+|..+.+.|.+
T Consensus 199 -~~-i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~-l~-~pk~VvIIGgG~iGlE~A~~l~~~G~~ 262 (561)
T PTZ00058 199 -QV-IEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFK-IK-EAKRIGIAGSGYIAVELINVVNRLGAE 262 (561)
T ss_pred -cE-EECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhh-cc-CCCEEEEECCcHHHHHHHHHHHHcCCc
Confidence 57 99999999999 7888888887531 233333322 11 278999999999999999999999999
Q ss_pred EEEEEecCceeecccc
Q 025254 212 TSLVVRSPACLWRFEQ 227 (255)
Q Consensus 212 v~~~~r~~~~~~~~~~ 227 (255)
|+++.+.+ +++|..+
T Consensus 263 Vtli~~~~-~il~~~d 277 (561)
T PTZ00058 263 SYIFARGN-RLLRKFD 277 (561)
T ss_pred EEEEEecc-cccccCC
Confidence 99999998 7777544
No 33
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.82 E-value=1.5e-19 Score=158.05 Aligned_cols=191 Identities=16% Similarity=0.207 Sum_probs=113.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc-CCCCCeEEec-cc---ccccCCCCCCCCCCCCCCCHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHL-AK---QFCQLPHLPFPSSYPMFVSRA 81 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~-~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 81 (255)
.+||+|||||++|+.+|..|++.|.+|+|||+ ..+||.|.. .+.+...+.. .. ....++.+..... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 58999999999999999999999999999999 568886642 2222110000 00 0001111111101 1234555
Q ss_pred HHHHHHHHHHHhcCCC----------CeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 82 QFIEHLDHYVSHFNIG----------PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 82 ~~~~~l~~~~~~~~l~----------~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
++.+++.+....+.-. +. ....++..+ +..++.+.. .+ +++|+||+|||+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~~~~------~~~~v~v~~--------~~-~~~d~lIiATGs--~- 141 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKID-KIKGTARFV------DPNTVEVNG--------ER-IEAKNIVIATGS--R- 141 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCE-EEEEEEEEc------cCCEEEECc--------EE-EEeCEEEEeCCC--C-
Confidence 6666655544432111 10 111122111 122344421 67 999999999995 4
Q ss_pred CCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
+|.+||..... ...+++..+.. .....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ +++|..
T Consensus 142 -~p~ipg~~~~~-----~~~~~~~~~~~-~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~ 208 (460)
T PRK06292 142 -VPPIPGVWLIL-----GDRLLTSDDAF-ELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLE 208 (460)
T ss_pred -CCCCCCCcccC-----CCcEECchHHh-CccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcch
Confidence 44555543220 12233332222 223457899999999999999999999999999999988 777643
No 34
>PRK12831 putative oxidoreductase; Provisional
Probab=99.82 E-value=1.5e-19 Score=157.56 Aligned_cols=163 Identities=22% Similarity=0.268 Sum_probs=114.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..+||+||||||+|+++|..|++.|++|+|+|+.+.+||.+.+. ++.+. .+..++..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~--------l~~~~~~~ 195 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFR--------LPKETVVK 195 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCcc--------CCccHHHH
Confidence 46899999999999999999999999999999988888765321 11111 11223556
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
+..+.+++.++.+ +.++.+. .. +...+.. .. +.||.||+|||+ +.|..+++||.+.
T Consensus 196 ~~~~~~~~~gv~i--~~~~~v~--------~~--v~~~~~~------~~-~~~d~viiAtGa-~~~~~l~ipG~~~---- 251 (464)
T PRK12831 196 KEIENIKKLGVKI--ETNVVVG--------KT--VTIDELL------EE-EGFDAVFIGSGA-GLPKFMGIPGENL---- 251 (464)
T ss_pred HHHHHHHHcCCEE--EcCCEEC--------Cc--CCHHHHH------hc-cCCCEEEEeCCC-CCCCCCCCCCcCC----
Confidence 6666777777765 7776551 11 2222210 23 579999999995 2567778888652
Q ss_pred CCCCCcEEecccCCC-------------CCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 166 ATGTGEVIHSTQYKN-------------GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~-------------~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..++...++.. .....+++++|||+|.+|+|+|..+.++|.+|+++.|+.
T Consensus 252 ----~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 252 ----NGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred ----cCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 12333322211 122467899999999999999999999999999999976
No 35
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.82 E-value=7.3e-19 Score=153.86 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=110.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCCCCCeEEecccccc-c----CCCCCCCCCCCCCCCH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFC-Q----LPHLPFPSSYPMFVSR 80 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~ 80 (255)
.+||+||||||+|+.+|..|++.|.+|+|||+.. +|| +....+.+.-.......+. . ...+.... ....+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCH
Confidence 5899999999999999999999999999999964 555 3333333321100000000 0 00111110 011222
Q ss_pred HHHHHHHHHHHHhc--CCCCeeEe-ccEEEEEEE---cCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 81 AQFIEHLDHYVSHF--NIGPSIRY-QRSVESASY---DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 81 ~~~~~~l~~~~~~~--~l~~~~~~-~~~v~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
..+..+.++...+. ++.. +. ...|+.+.. ..+...+.|...++ +..+ ++||+||+||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~g~~~~~~~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~p~~~ 150 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHF--LMKKNKITEIHGYGTFTDANTLEVDLNDG-----GTET-VTFDNAIIATG--SSTRLL 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhCCCEEEEEEEEEcCCCEEEEEecCC-----CeeE-EEcCEEEEeCC--CCCCCC
Confidence 22222222221110 1110 11 012222221 01124444443332 2257 89999999999 666543
Q ss_pred CCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
||.+ . .+.++...+... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ +++|..+
T Consensus 151 --pg~~-~------~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d 212 (466)
T PRK07818 151 --PGTS-L------SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNED 212 (466)
T ss_pred --CCCC-C------CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccC
Confidence 4432 1 223333332211 22346899999999999999999999999999999998 7887654
No 36
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.81 E-value=7e-19 Score=153.77 Aligned_cols=194 Identities=17% Similarity=0.187 Sum_probs=112.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc-cccCCCCCeEEeccccccc------CCCCCCCCCCCCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFCQ------LPHLPFPSSYPMFVS 79 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 79 (255)
++||+||||||+|+.+|..+++.|.+|+|||+...+||. .+..+.+...+......+. ...+.... ..-.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~--~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV--KPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc--cCccC
Confidence 489999999999999999999999999999986668873 2333332221111111110 00111000 00112
Q ss_pred HHHHHHHH-----------HHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 80 RAQFIEHL-----------DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 80 ~~~~~~~l-----------~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
..++.++. ....+..++.. ..+ +. +..+ ...+.|...++ ++.+ ++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~a---~~~~-~~~v~v~~~~g-----~~~~-~~~d~lVIATG-- 145 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDW--IKG-WG---RLDG-VGKVVVKAEDG-----SETQ-LEAKDIVIATG-- 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EE---EEcc-CCEEEEEcCCC-----ceEE-EEeCEEEEeCC--
Confidence 22222111 11222233332 222 21 1111 23444544332 2257 99999999999
Q ss_pred CCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 149 s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
++|. .+||.+.. ...++....... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ +++|..+
T Consensus 146 s~p~--~ipg~~~~------~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d 214 (466)
T PRK06115 146 SEPT--PLPGVTID------NQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTD 214 (466)
T ss_pred CCCC--CCCCCCCC------CCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCC
Confidence 5553 34554321 112333333222 22357899999999999999999999999999999988 7777543
No 37
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.81 E-value=7.8e-19 Score=153.79 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=113.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC--------CCCcc-cccCCCCCeEEeccccccc----CCCCCCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASI-WKKYSYDRLRLHLAKQFCQ----LPHLPFPSS 73 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~--------~~g~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 73 (255)
++||+|||+|++|+.+|..+++.|.+|++||+.. .+||. .+..+.+...+........ ...+.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 36663 3334444322111111111 011111100
Q ss_pred CCCCCCHHHHHHHHHH-----------HHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEE
Q 025254 74 YPMFVSRAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (255)
Q Consensus 74 ~~~~~~~~~~~~~l~~-----------~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vV 142 (255)
.....+...+.++..+ .++..++. .+..+..-++ .....|...++ +... +++|+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~---~i~G~a~f~~----~~~v~v~~~~g-----~~~~-~~~d~lV 148 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN---YENAYAEFVD----KHRIKATNKKG-----KEKI-YSAERFL 148 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcC----CCEEEEeccCC-----CceE-EEeCEEE
Confidence 0001222222222222 23333444 2222332221 13333332221 2257 9999999
Q ss_pred EeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCcee
Q 025254 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACL 222 (255)
Q Consensus 143 iAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~ 222 (255)
+||| +.|..|++||.... .+...+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.| + .+
T Consensus 149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~-~~ 214 (484)
T TIGR01438 149 IATG--ERPRYPGIPGAKEL---------CITSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S-IL 214 (484)
T ss_pred EecC--CCCCCCCCCCccce---------eecHHHhhc-ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c-cc
Confidence 9999 78888888886432 122222222 223467899999999999999999999999999997 4 56
Q ss_pred ecccc
Q 025254 223 WRFEQ 227 (255)
Q Consensus 223 ~~~~~ 227 (255)
+|..+
T Consensus 215 l~~~d 219 (484)
T TIGR01438 215 LRGFD 219 (484)
T ss_pred ccccC
Confidence 66543
No 38
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.81 E-value=1.1e-18 Score=151.60 Aligned_cols=175 Identities=16% Similarity=0.175 Sum_probs=113.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCC-CCHHHHH
Q 025254 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF-VSRAQFI 84 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (255)
++|+|||||++|+.+|..|+++ +.+|+|||+++..+ +.....+ .. .... ....+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~~lp--------------~~-----~~~~~~~~~~~~ 60 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANCALP--------------YY-----IGEVVEDRKYAL 60 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccCCcc--------------hh-----hcCccCCHHHcc
Confidence 4899999999999999999887 56999999988643 1110000 00 0000 1111222
Q ss_pred HHH-HHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 025254 85 EHL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (255)
Q Consensus 85 ~~l-~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~ 163 (255)
.+. ..+.++.++.+ +.+++|++++..+ +.+.+.... ++ +... ++||+||+||| +.|..|++++.
T Consensus 61 ~~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~~v~~~~~~--~~--~~~~-~~yd~lviAtG--s~~~~~~~~~~---- 125 (438)
T PRK13512 61 AYTPEKFYDRKQITV--KTYHEVIAINDER--QTVTVLNRK--TN--EQFE-ESYDKLILSPG--ASANSLGFESD---- 125 (438)
T ss_pred cCCHHHHHHhCCCEE--EeCCEEEEEECCC--CEEEEEECC--CC--cEEe-eecCEEEECCC--CCCCCCCCCCC----
Confidence 221 23334556655 8889999998765 554444322 11 2256 79999999999 66766664321
Q ss_pred cCCCCCCcEEecccCCCC-------CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 164 SSATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
.++......+. ....+++++|||+|.+|+|+|..+.+.|.+|+++++++ ++++..
T Consensus 126 -------~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~ 187 (438)
T PRK13512 126 -------ITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLM 187 (438)
T ss_pred -------CeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhc
Confidence 12222211110 12246899999999999999999999999999999998 666643
No 39
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.80 E-value=1.1e-18 Score=152.15 Aligned_cols=177 Identities=16% Similarity=0.255 Sum_probs=116.7
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
++|+|||||++|+++|..|++++ .+|+|||+.+..+ |..... +... ...+....++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~~~--------------~~~~----~~~~~~~~~~~~ 60 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGACGL--------------PYFV----GGFFDDPNTMIA 60 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecCCC--------------ceEe----ccccCCHHHhhc
Confidence 37999999999999999999875 4899999988542 110000 0000 000112223333
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
+..+.+.+.++.+ +.+++|++++..+ ..+.+.... ++ +... ++||+||+||| ++|..|.++|.+.
T Consensus 61 ~~~~~~~~~gv~~--~~~~~V~~id~~~--~~v~~~~~~--~~--~~~~-~~yd~lviAtG--~~~~~~~i~g~~~---- 125 (444)
T PRK09564 61 RTPEEFIKSGIDV--KTEHEVVKVDAKN--KTITVKNLK--TG--SIFN-DTYDKLMIATG--ARPIIPPIKNINL---- 125 (444)
T ss_pred CCHHHHHHCCCeE--EecCEEEEEECCC--CEEEEEECC--CC--CEEE-ecCCEEEECCC--CCCCCCCCCCcCC----
Confidence 4445556667665 7889999998765 554443311 11 1123 34999999999 6777788877642
Q ss_pred CCCCCcEEecccCCCC-------CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeec
Q 025254 166 ATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWR 224 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~ 224 (255)
..+++...+.+. ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++
T Consensus 126 ----~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~ 186 (444)
T PRK09564 126 ----ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILP 186 (444)
T ss_pred ----CCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCc
Confidence 233433332110 11246899999999999999999999999999999988 6665
No 40
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.80 E-value=5.3e-19 Score=154.73 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=113.0
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccc-cCCCCCeEEecccccc----cCCCCCCCCCCCCCCCHHH
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRAQ 82 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 82 (255)
+||+|||||++|+++|..|++.|.+|+|||+ +.+||.|. ..+++...+......+ ....+..... ....+...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHHH
Confidence 7999999999999999999999999999999 67888543 2333321111111100 0111111000 00112222
Q ss_pred HHHHH-----------HHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 83 FIEHL-----------DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 83 ~~~~l-----------~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
+.++. ....+..++.. ..+ ++..++ ...+.+...++ ... ++||+||+||| +.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g------~~~-~~~d~lVlAtG--~~p 143 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTV--IKG-EAKFLD----PGTVLVTGENG------EET-LTAKNIIIATG--SRP 143 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc----CCEEEEecCCC------cEE-EEeCEEEEcCC--CCC
Confidence 22221 22333344442 332 333332 24444544331 157 89999999999 677
Q ss_pred CCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
..|+++ . .+ .+..++...........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..
T Consensus 144 ~~~~~~-~-~~------~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~ 209 (461)
T TIGR01350 144 RSLPGP-F-DF------DGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGE 209 (461)
T ss_pred CCCCCC-C-CC------CCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCC
Confidence 666654 1 11 222222222222223346899999999999999999999999999999998 676643
No 41
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-18 Score=131.16 Aligned_cols=176 Identities=18% Similarity=0.268 Sum_probs=133.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCC---CHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFV---SRAQF 83 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 83 (255)
..+|+|||+||++..+|.++++...+-+++|..- .++.-... .+....-.+++|.|| ...++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~i~pGG--------------QLtTTT~veNfPGFPdgi~G~~l 72 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANGIAPGG--------------QLTTTTDVENFPGFPDGITGPEL 72 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccCcCCCc--------------eeeeeeccccCCCCCcccccHHH
Confidence 4599999999999999999999999999999854 11111000 011111223445554 46899
Q ss_pred HHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCc--cc
Q 025254 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL--CS 161 (255)
Q Consensus 84 ~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~--~~ 161 (255)
++.+++...++|.. .+-..|.+++... ..|.+.+.. .. +.+|.||+|||+..+ ...+||. ..
T Consensus 73 ~d~mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~--------~~-v~~~avI~atGAsAk--Rl~~pg~ge~~ 136 (322)
T KOG0404|consen 73 MDKMRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA--------RP-VTADAVILATGASAK--RLHLPGEGEGE 136 (322)
T ss_pred HHHHHHHHHhhcce---eeeeehhhccccC--CCeEEEecC--------Cc-eeeeeEEEeccccee--eeecCCCCcch
Confidence 99999999999987 4445788888877 788888855 67 899999999996443 4445554 33
Q ss_pred cccCCCCCCcEEecccCCCC--CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 162 FCSSATGTGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
| ..+.+..+..++. ..+.++..+|||||.+++|-|..|.+-+.+|.+++|++
T Consensus 137 f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd 190 (322)
T KOG0404|consen 137 F------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRD 190 (322)
T ss_pred H------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhh
Confidence 5 6666666666664 34789999999999999999999999999999999998
No 42
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.80 E-value=6e-19 Score=153.38 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=111.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.+. ++. +....++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~---------~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IPE---------FRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CCC---------ccCCHHHHH
Confidence 46899999999999999999999999999999998887754321 111 111134455
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+...++.+ +.+..+ + ..+++.+ .. ..||+||+|||+ +.|..|++||.+.
T Consensus 188 ~~~~~l~~~gv~~--~~~~~v------~----~~v~~~~--------~~-~~yd~viiAtGa-~~p~~~~ipG~~~---- 241 (449)
T TIGR01316 188 TEIKTLKKLGVTF--RMNFLV------G----KTATLEE--------LF-SQYDAVFIGTGA-GLPKLMNIPGEEL---- 241 (449)
T ss_pred HHHHHHHhCCcEE--EeCCcc------C----CcCCHHH--------HH-hhCCEEEEeCCC-CCCCcCCCCCCCC----
Confidence 5555566667655 666533 1 1133322 23 568999999995 2577788888642
Q ss_pred CCCCCcEEecccCCC--------------CCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 166 ATGTGEVIHSTQYKN--------------GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~--------------~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
. .+++..++.. .....+++++|||+|.+|+|+|..+.++|.+|+++.|++
T Consensus 242 ---~-gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 242 ---C-GVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred ---C-CcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 1 2333332210 112357899999999999999999999999999999986
No 43
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.80 E-value=1.5e-18 Score=152.19 Aligned_cols=197 Identities=14% Similarity=0.181 Sum_probs=115.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEec------cCCCCcccc-cCCCCCeE-EecccccccC----CCCCCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER------ENCYASIWK-KYSYDRLR-LHLAKQFCQL----PHLPFPSS 73 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~------~~~~g~~~~-~~~~~~~~-~~~~~~~~~~----~~~~~~~~ 73 (255)
..+|++|||||++|+++|..+++.|.+|+|||+ ...+||.+. ..+.+... ......+..+ ..+.....
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 358999999999999999999999999999998 245666543 22222111 0100110000 11111000
Q ss_pred CCCCCCHHHHHH-----------HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEE
Q 025254 74 YPMFVSRAQFIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (255)
Q Consensus 74 ~~~~~~~~~~~~-----------~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vV 142 (255)
.. -.+...+.+ ......+..++. ....++..++..+ +.++|.+... ++ .+ +++|+||
T Consensus 83 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~~~~--~~~~v~v~~~-~~----~~-~~~d~lV 150 (475)
T PRK06327 83 GV-KIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT---VLKGRGSFVGKTD--AGYEIKVTGE-DE----TV-ITAKHVI 150 (475)
T ss_pred CC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEecCCC--CCCEEEEecC-CC----eE-EEeCEEE
Confidence 00 011122222 222233344554 3344565665444 4566666432 11 57 9999999
Q ss_pred EeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCcee
Q 025254 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACL 222 (255)
Q Consensus 143 iAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~ 222 (255)
+||| +.|..++ +.. + .+..++..+........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .+
T Consensus 151 iATG--s~p~~~p--~~~-~------~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~ 218 (475)
T PRK06327 151 IATG--SEPRHLP--GVP-F------DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AF 218 (475)
T ss_pred EeCC--CCCCCCC--CCC-C------CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-cc
Confidence 9999 5554332 221 2 222233222211222346899999999999999999999999999999988 66
Q ss_pred eccc
Q 025254 223 WRFE 226 (255)
Q Consensus 223 ~~~~ 226 (255)
+|..
T Consensus 219 l~~~ 222 (475)
T PRK06327 219 LAAA 222 (475)
T ss_pred CCcC
Confidence 6643
No 44
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.80 E-value=5e-19 Score=150.97 Aligned_cols=169 Identities=20% Similarity=0.317 Sum_probs=115.5
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
++|+|||||++|+.+|..|++++ .+|+||++++... |.... .+..........++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~--------------l~~~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPD--------------LSHVFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCc--------------CcHHHhCCCCHHHhhc
Confidence 58999999999999999998864 5899999977421 11000 0001111122233333
Q ss_pred -HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 025254 86 -HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (255)
Q Consensus 86 -~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~ 164 (255)
...++++++++.+ +.+++|++++... . .|.+.+ .. +.||+||+||| +.|..|+++|.+.
T Consensus 62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~--~--~v~~~~--------~~-~~yd~LVlATG--~~~~~p~i~G~~~--- 121 (377)
T PRK04965 62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA--Q--VVKSQG--------NQ-WQYDKLVLATG--ASAFVPPIPGREL--- 121 (377)
T ss_pred CCHHHHHHhCCCEE--ECCCEEEEEECCC--C--EEEECC--------eE-EeCCEEEECCC--CCCCCCCCCCCce---
Confidence 2445566777665 8888999998754 2 354432 67 89999999999 6777888887532
Q ss_pred CCCCCCcEEecccCCC-----CCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecc
Q 025254 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRF 225 (255)
Q Consensus 165 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (255)
++......+ .....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++.
T Consensus 122 -------v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~ 179 (377)
T PRK04965 122 -------MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLAS 179 (377)
T ss_pred -------EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccch
Confidence 222222111 111246899999999999999999999999999999988 66554
No 45
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.79 E-value=1.7e-18 Score=151.11 Aligned_cols=191 Identities=15% Similarity=0.182 Sum_probs=112.3
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCCCCCeEEeccccccc----CCCCCCCCC-CCCCCCHHH
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ----LPHLPFPSS-YPMFVSRAQ 82 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 82 (255)
+|+|||||++|+.+|..+++.|.+|+|||++. +|| +.+..+.+...+......+. ...+..... .....+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 89999999999999999999999999999986 454 33333333221111000000 001111000 000122233
Q ss_pred HHHHHHHH-----------HHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 83 FIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 83 ~~~~l~~~-----------~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
+..+..+. ++..++. ....++..++ ...+.|...++ ..+ ++||+||+||| +.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~----~~~v~v~~~~~------~~~-~~~d~lviATG--s~p 144 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET----DHRVRVEYGDK------EEV-VDAEQFIIAAG--SEP 144 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc----CCEEEEeeCCC------cEE-EECCEEEEeCC--CCC
Confidence 33332222 2222333 2233333332 24445544221 157 89999999999 667
Q ss_pred CCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
..|++++.+. ..+++..... .....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..
T Consensus 145 ~~~p~~~~~~--------~~v~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~ 209 (458)
T PRK06912 145 TELPFAPFDG--------KWIINSKHAM-SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGE 209 (458)
T ss_pred CCCCCCCCCC--------CeEEcchHHh-CccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccc
Confidence 6666555432 1233333222 223346899999999999999999999999999999998 777754
No 46
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.79 E-value=6.9e-19 Score=157.72 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=114.9
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEecc-CCCCc-ccccCCCCCeE-EecccccccC------CCCCCC-----C
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYAS-IWKKYSYDRLR-LHLAKQFCQL------PHLPFP-----S 72 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~-~~~g~-~~~~~~~~~~~-~~~~~~~~~~------~~~~~~-----~ 72 (255)
.+||+|||+|++|+.+|..+++.|.+|+|||+. ..+|| +-+..+.+... ......+... ..+... .
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999999975 24676 22223222211 1111000000 000000 0
Q ss_pred ----------C--CCCCCCHHHHHHHHHHHHHhcC--CCC-----eeEeccEEEEEEEcCC--CCcEEEEEcccCCCCce
Q 025254 73 ----------S--YPMFVSRAQFIEHLDHYVSHFN--IGP-----SIRYQRSVESASYDEA--TNMWNVKASNLLSPGRE 131 (255)
Q Consensus 73 ----------~--~~~~~~~~~~~~~l~~~~~~~~--l~~-----~~~~~~~v~~i~~~~~--~~~~~v~~~~~~~~~~~ 131 (255)
. ...-++...+.++.+....... +.. .+...++.+.+..... .+..+|.+.. ++
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~--~g--- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEK--SG--- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEcc--CC---
Confidence 0 0011234444444444333210 000 0011112222322110 0111233321 11
Q ss_pred eeEEEeeCEEEEeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCe
Q 025254 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (255)
Q Consensus 132 ~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~ 211 (255)
.+ +.+|+||+||| +.|..|+.++.+. ..++...+... ....+++++|||+|.+|+|+|..+.+.|.+
T Consensus 271 -~~-i~ad~lIIATG--S~P~~P~~~~~~~--------~~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~e 337 (659)
T PTZ00153 271 -KE-FKVKNIIIATG--STPNIPDNIEVDQ--------KSVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGSE 337 (659)
T ss_pred -EE-EECCEEEEcCC--CCCCCCCCCCCCC--------CcEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCCe
Confidence 67 89999999999 7777776544322 13444433322 223478999999999999999999999999
Q ss_pred EEEEEecCceeeccccc
Q 025254 212 TSLVVRSPACLWRFEQV 228 (255)
Q Consensus 212 v~~~~r~~~~~~~~~~~ 228 (255)
|+++++.+ +++|..+.
T Consensus 338 VTLIe~~~-~ll~~~d~ 353 (659)
T PTZ00153 338 VVSFEYSP-QLLPLLDA 353 (659)
T ss_pred EEEEeccC-cccccCCH
Confidence 99999999 78876443
No 47
>PRK07846 mycothione reductase; Reviewed
Probab=99.79 E-value=1.1e-18 Score=151.80 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=111.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCCCCCeEEecccccc-cC---CCCCCCCCCCCCCCHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFC-QL---PHLPFPSSYPMFVSRA 81 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~ 81 (255)
++||+|||+||+|..+|..+ .|.+|+|||+.. +|| +-+..+.|...+......+ .. ..+..... ..-.+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence 37999999999999888764 599999999965 555 3333333322111111111 00 11111100 0112334
Q ss_pred HHHHHHHHHHHh-------------cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 82 QFIEHLDHYVSH-------------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 82 ~~~~~l~~~~~~-------------~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
++.++......+ .++.+ ..+ +...+ +..+|++.++ .+ ++||+||+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~a~~~------~~~~V~v~~g-------~~-~~~d~lViATG-- 137 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDV--YRG-HARFI------GPKTLRTGDG-------EE-ITADQVVIAAG-- 137 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEE--EEE-EEEEe------cCCEEEECCC-------CE-EEeCEEEEcCC--
Confidence 444444333322 22221 221 22222 2233555442 57 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 149 s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
++|.+|+++|.+.. .+....+.. .....+++++|||+|.+|+|+|..+.+.|.+|+++.|++ +++|..+
T Consensus 138 s~p~~p~i~g~~~~--------~~~~~~~~~-~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d 206 (451)
T PRK07846 138 SRPVIPPVIADSGV--------RYHTSDTIM-RLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLD 206 (451)
T ss_pred CCCCCCCCCCcCCc--------cEEchHHHh-hhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccC
Confidence 78888888875322 122222222 122347899999999999999999999999999999998 6766543
No 48
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.79 E-value=1.4e-18 Score=151.86 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=112.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC-CCCeEEEecc--------CCCCc-ccccCCCCCeEEecccccc----cCCCCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERE--------NCYAS-IWKKYSYDRLRLHLAKQFC----QLPHLPFP 71 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~-g~~v~lie~~--------~~~g~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 71 (255)
.++||+|||+|++|+.+|..++++ |.+|+|||+. ..+|| +-+..+.+...+....... ....+...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 468999999999999999999997 8999999984 35776 3333333322211111110 00111110
Q ss_pred CC-CCCCCCHHHHHHHHHHH-----------HHh-cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEee
Q 025254 72 SS-YPMFVSRAQFIEHLDHY-----------VSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (255)
Q Consensus 72 ~~-~~~~~~~~~~~~~l~~~-----------~~~-~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~ 138 (255)
.. ...-.+...+.++.+.. ++. .++.+ ..+ +..-+ + .....|.......+ .+... ++|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~--i~G-~a~f~---~-~~~v~V~~~~~~~~-~~~~~-~~~ 152 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTF--FLG-WGALE---D-KNVVLVRESADPKS-AVKER-LQA 152 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEE--EEE-EEEEc---c-CCEEEEeeccCCCC-CcceE-EEC
Confidence 00 00012222333322221 222 13331 222 22111 1 13333332111000 01257 999
Q ss_pred CEEEEeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhh---cCeEEEE
Q 025254 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLV 215 (255)
Q Consensus 139 d~vViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~---g~~v~~~ 215 (255)
|+||+||| +.|..|+++|.+.. +...+... ....+++++|||+|.+|+|+|..+..+ |.+|+++
T Consensus 153 d~lIIATG--s~p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli 219 (486)
T TIGR01423 153 EHILLATG--SWPQMLGIPGIEHC----------ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLC 219 (486)
T ss_pred CEEEEecC--CCCCCCCCCChhhe----------echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 99999999 77888888886422 22222111 223478999999999999999877665 8999999
Q ss_pred EecCceeecccc
Q 025254 216 VRSPACLWRFEQ 227 (255)
Q Consensus 216 ~r~~~~~~~~~~ 227 (255)
++.+ +++|..+
T Consensus 220 ~~~~-~il~~~d 230 (486)
T TIGR01423 220 YRNN-MILRGFD 230 (486)
T ss_pred ecCC-ccccccC
Confidence 9998 7777654
No 49
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.79 E-value=4.9e-18 Score=148.48 Aligned_cols=198 Identities=14% Similarity=0.107 Sum_probs=116.6
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc-cccCCCCCeEEecccc----cccCCCCCCCCC--CCCCCCH
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQ----FCQLPHLPFPSS--YPMFVSR 80 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~ 80 (255)
+||+|||+|++|+.+|..+++.|.+|+++|+.. +||. -...+.+......... +-....+..... .....+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 589999999999999999999999999999976 6663 2223322211100000 000000110000 0001121
Q ss_pred HHHH-----------HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 81 AQFI-----------EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 81 ~~~~-----------~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
..+. +.+.+.++..++.+ +. .+++.++...+...+.|...++ +..+ +.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~~~~~~~~~~v~V~~~~g-----~~~~-~~~d~lViATG--s 149 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRV--IA-GRGRLIDPGLGPHRVKVTTADG-----GEET-LDADVVLIATG--A 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EE-EEEEEeecccCCCEEEEEeCCC-----ceEE-EecCEEEEcCC--C
Confidence 2222 23334445556553 33 3555543111125555655432 1247 89999999999 6
Q ss_pred CCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
.|..|+.++.. ...+++...... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|..+
T Consensus 150 ~p~~~p~~~~~--------~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d 217 (466)
T PRK07845 150 SPRILPTAEPD--------GERILTWRQLYD-LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGED 217 (466)
T ss_pred CCCCCCCCCCC--------CceEEeehhhhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCC
Confidence 66655433321 122444444333 22346899999999999999999999999999999988 7777643
No 50
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=1.6e-18 Score=139.22 Aligned_cols=208 Identities=18% Similarity=0.174 Sum_probs=126.6
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCCCCCe-EEeccc---ccccCCCCCCCCCCC
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRL-RLHLAK---QFCQLPHLPFPSSYP 75 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 75 (255)
|++....+|++|||||.+|+++|+..+..|.++.++|..-.+|| +-...+.+.- ..+... .+-....+.++....
T Consensus 14 ~a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~ 93 (478)
T KOG0405|consen 14 MAADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEE 93 (478)
T ss_pred ccccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccc
Confidence 34445679999999999999999999999999999999866776 2233333321 111111 111112222222111
Q ss_pred CCCCHHHHHHHHHHHHHhcC-CCCeeEeccEEEEEEE---cCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 76 MFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASY---DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~v~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
.-.+...+.+--..++.+++ +..+...+..|.-++- ....+...|...++. ... +.++++++|+| ++|
T Consensus 94 ~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~-----~~~-Ytak~iLIAtG--g~p 165 (478)
T KOG0405|consen 94 GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT-----KIV-YTAKHILIATG--GRP 165 (478)
T ss_pred cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe-----eEE-EecceEEEEeC--Ccc
Confidence 11111222222222222211 1100011222221211 111245556665542 266 89999999999 889
Q ss_pred CCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccccc
Q 025254 152 FTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQV 228 (255)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 228 (255)
.+|.+||.+.- +.+..+.+ .+..+++++|+|+|++|+|+|..++.+|.+++++.|.+ .+|..+|.
T Consensus 166 ~~PnIpG~E~g----------idSDgff~-Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~ 230 (478)
T KOG0405|consen 166 IIPNIPGAELG----------IDSDGFFD-LEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDE 230 (478)
T ss_pred CCCCCCchhhc----------cccccccc-hhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhH
Confidence 99999987532 44444444 55678999999999999999999999999999999999 67766543
No 51
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.78 E-value=2.1e-18 Score=148.00 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=110.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC--CeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
+.+|+|||||++|+.+|..|++.+. +|+|+++....+ |... ..+..+... ...+ .....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~--~l~~~~~~~---~~~~--~~~~~----- 63 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERP--PLSKSMLLE---DSPQ--LQQVL----- 63 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCC--CCCHHHHCC---CCcc--ccccC-----
Confidence 4689999999999999999999876 799999987543 1100 000000000 0000 00000
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~ 164 (255)
-.++..+.++.. +.++.|+.++... ..|.+.++ .. +.||+||+||| +.|..+++++..
T Consensus 64 --~~~~~~~~~i~~--~~g~~V~~id~~~----~~v~~~~g-------~~-~~yd~LViATG--s~~~~~p~~~~~---- 121 (396)
T PRK09754 64 --PANWWQENNVHL--HSGVTIKTLGRDT----RELVLTNG-------ES-WHWDQLFIATG--AAARPLPLLDAL---- 121 (396)
T ss_pred --CHHHHHHCCCEE--EcCCEEEEEECCC----CEEEECCC-------CE-EEcCEEEEccC--CCCCCCCCCCcC----
Confidence 012233456654 7888899998754 33555543 67 99999999999 666555544422
Q ss_pred CCCCCCcEEecccCCC-----CCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecc
Q 025254 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRF 225 (255)
Q Consensus 165 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (255)
...++......+ .....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ ++++.
T Consensus 122 ----~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~ 182 (396)
T PRK09754 122 ----GERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGR 182 (396)
T ss_pred ----CCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhh
Confidence 112333221111 112247899999999999999999999999999999988 66654
No 52
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.78 E-value=1.4e-18 Score=159.81 Aligned_cols=166 Identities=23% Similarity=0.261 Sum_probs=114.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+||||||+|+++|..|++.|++|+|+|+.+.+||.+.+. ++.+. ...++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~r---------lp~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------------IPEFR---------LPKKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCCC---------CCHHHHH
Confidence 46899999999999999999999999999999988888765421 11111 1124455
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+.++++.+ +.+..+. .. +++.+. .. ..||.||+|||+ +.|..+++||.+..
T Consensus 486 ~~~~~l~~~gv~~--~~~~~v~--------~~--v~~~~l-------~~-~~ydavvlAtGa-~~~~~l~ipG~~~~--- 541 (752)
T PRK12778 486 VEIENLKKLGVKF--ETDVIVG--------KT--ITIEEL-------EE-EGFKGIFIASGA-GLPNFMNIPGENSN--- 541 (752)
T ss_pred HHHHHHHHCCCEE--ECCCEEC--------Cc--CCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCCCCCCC---
Confidence 5556667777665 7765441 11 233322 34 679999999996 25677788886421
Q ss_pred CCCCCcEEecccCCC-------------CCCCCCCeEEEEcCCcCHHHHHHHHhhhcCe-EEEEEecCceeec
Q 025254 166 ATGTGEVIHSTQYKN-------------GKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPACLWR 224 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~-------------~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~~~~r~~~~~~~ 224 (255)
.++...++.. .....+++++|||+|.+|+|+|..+.++|.+ |+++.|++...+|
T Consensus 542 -----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~ 609 (752)
T PRK12778 542 -----GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMP 609 (752)
T ss_pred -----CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 2333332211 1123578999999999999999999999987 9999998633344
No 53
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.78 E-value=1.9e-18 Score=150.82 Aligned_cols=165 Identities=20% Similarity=0.249 Sum_probs=114.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+... . +.+....++..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHHH
Confidence 46899999999999999999999999999999998887754321 0 11111235666
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
+..+.+.+.++.+ +.++.+.. . +++.+ .. +.||+||+|||+. .+..++++|.+.
T Consensus 195 ~~~~~l~~~gv~~--~~~~~v~~--------~--v~~~~--------~~-~~~d~vvlAtGa~-~~~~~~i~G~~~---- 248 (457)
T PRK11749 195 REVERLLKLGVEI--RTNTEVGR--------D--ITLDE--------LR-AGYDAVFIGTGAG-LPRFLGIPGENL---- 248 (457)
T ss_pred HHHHHHHHcCCEE--EeCCEECC--------c--cCHHH--------HH-hhCCEEEEccCCC-CCCCCCCCCccC----
Confidence 6667777777655 77765411 1 22222 34 6799999999963 355667777542
Q ss_pred CCCCCcEEecccCCC--------CCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEecCceeec
Q 025254 166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPACLWR 224 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~--------~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~ 224 (255)
..+++..++.. .....+++++|||+|.+|+|+|..+.+.|. +|+++.|++...+|
T Consensus 249 ----~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~ 312 (457)
T PRK11749 249 ----GGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMP 312 (457)
T ss_pred ----CCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 12333322211 112257899999999999999999999997 89999997633344
No 54
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.77 E-value=5.2e-18 Score=156.24 Aligned_cols=164 Identities=26% Similarity=0.329 Sum_probs=111.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+||||||+|+++|..|++.|++|+|+|+.+.+||..... . +.+....++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------I---------P~~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------I---------PQFRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------c---------ccccccHHHHH
Confidence 46899999999999999999999999999999998888764321 1 11111234445
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+...++++ +.++.+ .+.. .+. .. ..+|+||+|||+. .+..++++|.+.
T Consensus 594 ~die~l~~~GVe~--~~gt~V-di~l-----------e~L-------~~-~gYDaVILATGA~-~~~~l~IpG~~~---- 646 (1019)
T PRK09853 594 HDIEFVKAHGVKF--EFGCSP-DLTV-----------EQL-------KN-EGYDYVVVAIGAD-KNGGLKLEGGNQ---- 646 (1019)
T ss_pred HHHHHHHHcCCEE--EeCcee-EEEh-----------hhh-------ee-ccCCEEEECcCCC-CCCCCCCCCccC----
Confidence 5556667777665 777665 2221 111 34 5689999999963 334455666431
Q ss_pred CCCCCcEEecccCCC------CCCCCCCeEEEEcCCcCHHHHHHHHhhh-c-CeEEEEEecCceeecc
Q 025254 166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSPACLWRF 225 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~g~~~~e~a~~l~~~-g-~~v~~~~r~~~~~~~~ 225 (255)
.++...++.. .....+++|+|||+|.+|+|+|..+.+. | .+|+++.|++...+|.
T Consensus 647 -----gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA 709 (1019)
T PRK09853 647 -----NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA 709 (1019)
T ss_pred -----CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc
Confidence 1232222211 1223579999999999999999998888 4 4899999987445553
No 55
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.77 E-value=1.1e-18 Score=160.77 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=117.9
Q ss_pred CeEEEECCCHHHHHHHHHHhhC----CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHH
Q 025254 8 VEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~----g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (255)
++|||||+|++|+.+|..|.++ +++|+||++.+.++ |..+.+. . .+.. ....++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~--~------------~~~~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLS--S------------YFSH-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcch--H------------hHcC-CCHHHc
Confidence 5899999999999999999764 46999999998653 2211100 0 0000 111223
Q ss_pred HHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 025254 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (255)
Q Consensus 84 ~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~ 163 (255)
.....++.+..++.+ +.+.+|++++... ..|.+.++ .. +.||+||+||| +.|..|++||.+..
T Consensus 62 ~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G-------~~-i~yD~LVIATG--s~p~~p~ipG~~~~- 124 (847)
T PRK14989 62 SLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG-------RT-VFYDKLIMATG--SYPWIPPIKGSETQ- 124 (847)
T ss_pred cCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC-------cE-EECCEEEECCC--CCcCCCCCCCCCCC-
Confidence 323334555667665 8888899987643 34555543 67 89999999999 77888888887532
Q ss_pred cCCCCCCcEEecccCCCC-----CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecc
Q 025254 164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRF 225 (255)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (255)
.++......+. ....+++++|||+|.+|+|+|..|.++|.+|+++++.+ ++++.
T Consensus 125 -------~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~ 183 (847)
T PRK14989 125 -------DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAE 183 (847)
T ss_pred -------CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhh
Confidence 22322221110 12246899999999999999999999999999999998 77764
No 56
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.77 E-value=7.7e-18 Score=146.09 Aligned_cols=161 Identities=19% Similarity=0.142 Sum_probs=109.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhh--CCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~--~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (255)
.+++|+||||||+|+++|..|++ .|++|+|||+.+.++|..++.. .+.+.....+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~~~~k~v 81 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDHPETKNV 81 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCcchhHHH
Confidence 46799999999999999999987 6999999999998887655321 1233334456
Q ss_pred HHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 025254 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (255)
Q Consensus 84 ~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~ 163 (255)
.+.+.+.+...++.+ +.+..+. .. ++..+ .. ..||.||+|+|+. .+..+++||.+.
T Consensus 82 ~~~~~~~~~~~~v~~--~~nv~vg--------~d--vtl~~--------L~-~~yDaVIlAtGa~-~~~~l~IpG~d~-- 137 (491)
T PLN02852 82 TNQFSRVATDDRVSF--FGNVTLG--------RD--VSLSE--------LR-DLYHVVVLAYGAE-SDRRLGIPGEDL-- 137 (491)
T ss_pred HHHHHHHHHHCCeEE--EcCEEEC--------cc--ccHHH--------Hh-hhCCEEEEecCCC-CCCCCCCCCCCC--
Confidence 666666666655543 5543331 11 23322 33 5689999999953 235667777542
Q ss_pred cCCCCCCcEEecccCCC------------CCCCCCCeEEEEcCCcCHHHHHHHHhhh--------------------cC-
Q 025254 164 SSATGTGEVIHSTQYKN------------GKPYGGKNVLVVGSGNSGMEIALDLANH--------------------AA- 210 (255)
Q Consensus 164 ~~~~~~~~~~~~~~~~~------------~~~~~~~~v~ViG~g~~~~e~a~~l~~~--------------------g~- 210 (255)
..++...++.. .....+++++|||+|.+|+|+|..|.+. +.
T Consensus 138 ------~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 138 ------PGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred ------CCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 23344333210 0123578999999999999999998765 54
Q ss_pred eEEEEEecC
Q 025254 211 KTSLVVRSP 219 (255)
Q Consensus 211 ~v~~~~r~~ 219 (255)
+|+++.|+.
T Consensus 212 ~V~iv~RRg 220 (491)
T PLN02852 212 KVYLVGRRG 220 (491)
T ss_pred EEEEEEcCC
Confidence 699999997
No 57
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.77 E-value=9.3e-19 Score=161.16 Aligned_cols=170 Identities=21% Similarity=0.207 Sum_probs=116.9
Q ss_pred EEEECCCHHHHHHHHHHhhC---CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 10 VIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 10 vvIIG~G~~Gl~~a~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
|||||+|++|+.+|.+|.+. +++|+|||+.+.++ |..+.+ +.......+..++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--------------~~~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--------------SSVLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--------------cHHHCCCCCHHHccCC
Confidence 68999999999999999875 46899999988653 111100 0000111122233222
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~~ 166 (255)
..+++++.++++ +.+++|++++... ..|.+.++ .+ +.||+||+||| +.|..|++||.+..
T Consensus 60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g-------~~-~~yD~LVlATG--s~p~~p~ipG~~~~---- 119 (785)
T TIGR02374 60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG-------RT-LSYDKLILATG--SYPFILPIPGADKK---- 119 (785)
T ss_pred CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC-------cE-eeCCEEEECCC--CCcCCCCCCCCCCC----
Confidence 334456667665 8899999998653 34666553 67 89999999999 77888888886532
Q ss_pred CCCCcEEecccCCC-----CCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecc
Q 025254 167 TGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRF 225 (255)
Q Consensus 167 ~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (255)
.++......+ .....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ ++++.
T Consensus 120 ----~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~ 178 (785)
T TIGR02374 120 ----GVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAK 178 (785)
T ss_pred ----CEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhh
Confidence 2333222111 011246899999999999999999999999999999988 66654
No 58
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.76 E-value=1.6e-17 Score=140.46 Aligned_cols=176 Identities=20% Similarity=0.205 Sum_probs=111.8
Q ss_pred cccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHH
Q 025254 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (255)
Q Consensus 3 ~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (255)
.+..+++|+|||+|++|+.+|..|++.|.+|+++|+.+.+++.+.... +.. ..+...
T Consensus 14 ~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~---------------~~~--------~~~~~~ 70 (352)
T PRK12770 14 PPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGI---------------PEF--------RIPIER 70 (352)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecC---------------ccc--------ccCHHH
Confidence 345578999999999999999999999999999999988776542110 000 012233
Q ss_pred HHHHHHHHHHhcCCCCeeEeccEEEEEEE--cCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcc
Q 025254 83 FIEHLDHYVSHFNIGPSIRYQRSVESASY--DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC 160 (255)
Q Consensus 83 ~~~~l~~~~~~~~l~~~~~~~~~v~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~ 160 (255)
+.....++ .+.++.+ +.++.+..+.. ....+.+....... +... +.||+||+|||++ .+.+|++||.+
T Consensus 71 ~~~~~~~l-~~~~i~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~d~lviAtGs~-~~~~~~ipg~~ 140 (352)
T PRK12770 71 VREGVKEL-EEAGVVF--HTRTKVCCGEPLHEEEGDEFVERIVSL-----EELV-KKYDAVLIATGTW-KSRKLGIPGED 140 (352)
T ss_pred HHHHHHHH-HhCCeEE--ecCcEEeeccccccccccccccccCCH-----HHHH-hhCCEEEEEeCCC-CCCcCCCCCcc
Confidence 33444443 4446654 77777755432 11012222111111 1145 7899999999952 46677788754
Q ss_pred ccccCCCCCCcEEecccC-----------CCC---CCCCCCeEEEEcCCcCHHHHHHHHhhhcCe-EEEEEecC
Q 025254 161 SFCSSATGTGEVIHSTQY-----------KNG---KPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP 219 (255)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~~~~r~~ 219 (255)
.. .++...++ ... ....+++++|||+|.+|+|+|..+...|.+ |+++.|++
T Consensus 141 ~~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 141 LP--------GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred cc--------CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 21 22222110 010 122368999999999999999999999987 99999875
No 59
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.76 E-value=4.5e-18 Score=147.06 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=114.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+++|||||||++|+.+|..|.+.+.+|+|||+.+..- |..+ .+.......+..++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence 35799999999999999999987778999999977431 1000 0000111122233444
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCC-CceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP-GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~ 164 (255)
.+...+...++. +...+|++|+..+ +.+.+...+.... ..+..+ +.||+||+||| +.+..+.+||..+.
T Consensus 67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g~~-i~yD~LViAtG--s~~~~~~ipG~~e~-- 136 (424)
T PTZ00318 67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANVNTFS-VPYDKLVVAHG--ARPNTFNIPGVEER-- 136 (424)
T ss_pred HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccCCceE-ecCCEEEECCC--cccCCCCCCCHHHc--
Confidence 455555555544 5667999998866 5555532211000 001167 99999999999 77778888886532
Q ss_pred CCCCCCcEEecccCCC----------------C------CCCCCCeEEEEcCCcCHHHHHHHHhhh--------------
Q 025254 165 SATGTGEVIHSTQYKN----------------G------KPYGGKNVLVVGSGNSGMEIALDLANH-------------- 208 (255)
Q Consensus 165 ~~~~~~~~~~~~~~~~----------------~------~~~~~~~v~ViG~g~~~~e~a~~l~~~-------------- 208 (255)
.+....+.+ . .....++++|||+|.+|+|+|..+...
T Consensus 137 -------~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~ 209 (424)
T PTZ00318 137 -------AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVE 209 (424)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 011111000 0 001234899999999999999999763
Q ss_pred cCeEEEEEecCceeeccc
Q 025254 209 AAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 209 g~~v~~~~r~~~~~~~~~ 226 (255)
+.+|+++++.+ +++|..
T Consensus 210 ~~~Vtlv~~~~-~ll~~~ 226 (424)
T PTZ00318 210 ECKVTVLEAGS-EVLGSF 226 (424)
T ss_pred cCEEEEEcCCC-cccccC
Confidence 68899999998 777643
No 60
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.76 E-value=2.8e-18 Score=144.06 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=119.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
+++|||||||.+|+.+|..|.+.. .+|++||+....- |... +++ ...+..+..++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl--~~pl------------L~e--------va~g~l~~~~i~ 60 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL--FTPL------------LYE--------VATGTLSESEIA 60 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc--cchh------------hhh--------hhcCCCChhhee
Confidence 479999999999999999999975 8999999987421 1100 011 111223334444
Q ss_pred HHHHHHHHhcC-CCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 025254 85 EHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (255)
Q Consensus 85 ~~l~~~~~~~~-l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~ 163 (255)
.-+.+.+...+ +. +...+|++|+..+ +. |++.+. .. +.||+||+|+| +.+..+++||..++
T Consensus 61 ~p~~~~~~~~~~v~---~~~~~V~~ID~~~--k~--V~~~~~-------~~-i~YD~LVvalG--s~~~~fgi~G~~E~- 122 (405)
T COG1252 61 IPLRALLRKSGNVQ---FVQGEVTDIDRDA--KK--VTLADL-------GE-ISYDYLVVALG--SETNYFGIPGAAEY- 122 (405)
T ss_pred ccHHHHhcccCceE---EEEEEEEEEcccC--CE--EEeCCC-------cc-ccccEEEEecC--CcCCcCCCCCHHHh-
Confidence 55556555444 44 5666999998865 44 666652 56 99999999999 88889999997765
Q ss_pred cCCCCCCcEEecccC-----------CCCCCCC----CCeEEEEcCCcCHHHHHHHHhhhc-------------CeEEEE
Q 025254 164 SSATGTGEVIHSTQY-----------KNGKPYG----GKNVLVVGSGNSGMEIALDLANHA-------------AKTSLV 215 (255)
Q Consensus 164 ~~~~~~~~~~~~~~~-----------~~~~~~~----~~~v~ViG~g~~~~e~a~~l~~~g-------------~~v~~~ 215 (255)
.-.+....+. ....... --.++|+|+|++|+|+|.+|.+.- .+|+|+
T Consensus 123 -----a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LV 197 (405)
T COG1252 123 -----AFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILV 197 (405)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEE
Confidence 2111111111 0001011 136999999999999999998752 289999
Q ss_pred EecCceeeccccc
Q 025254 216 VRSPACLWRFEQV 228 (255)
Q Consensus 216 ~r~~~~~~~~~~~ 228 (255)
++.+ ++||..+.
T Consensus 198 ea~p-~ILp~~~~ 209 (405)
T COG1252 198 EAGP-RILPMFPP 209 (405)
T ss_pred ccCc-hhccCCCH
Confidence 9999 99997643
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.75 E-value=9e-18 Score=151.90 Aligned_cols=166 Identities=18% Similarity=0.223 Sum_probs=112.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+... + +.+....++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 247 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVID 247 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHHH
Confidence 35799999999999999999999999999999999888876432 1 11111234455
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+...++.+ ++++.+ +. .++..+ .. ..+|.||+|||+. .+..+++||.+.
T Consensus 248 ~~~~~l~~~Gv~i--~~~~~v-~~---------dv~~~~--------~~-~~~DaVilAtGa~-~~~~~~ipG~~~---- 301 (652)
T PRK12814 248 ADIAPLRAMGAEF--RFNTVF-GR---------DITLEE--------LQ-KEFDAVLLAVGAQ-KASKMGIPGEEL---- 301 (652)
T ss_pred HHHHHHHHcCCEE--EeCCcc-cC---------ccCHHH--------HH-hhcCEEEEEcCCC-CCCCCCCCCcCc----
Confidence 5556667777654 666543 11 012222 23 4689999999953 234556777542
Q ss_pred CCCCCcEEecccCCC-----CCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEecCceeecc
Q 025254 166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPACLWRF 225 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~ 225 (255)
. .++...++.. .....+++++|||+|.+|+|+|..+.++|. +|+++.|++...+|.
T Consensus 302 ---~-gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa 363 (652)
T PRK12814 302 ---P-GVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA 363 (652)
T ss_pred ---C-CcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC
Confidence 1 2333222211 123468999999999999999999999986 699999987334543
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=156.54 Aligned_cols=162 Identities=19% Similarity=0.255 Sum_probs=113.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+||||||+||++|..|++.|++|+|+|+.+.+||...+. .+.+....++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------ip~~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------IPSFRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc------------------------CCccCCCHHHHH
Confidence 35899999999999999999999999999999998887653321 122222346666
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+.+.|+.+ +.+..+ + .. ++..... .. ..||.||+|||+ ..|..+++||.+.
T Consensus 485 ~~~~~l~~~Gv~~--~~~~~v-g-------~~--~~~~~l~------~~-~~yDaViIATGa-~~pr~l~IpG~~l---- 540 (1006)
T PRK12775 485 REVQRLVDIGVKI--ETNKVI-G-------KT--FTVPQLM------ND-KGFDAVFLGVGA-GAPTFLGIPGEFA---- 540 (1006)
T ss_pred HHHHHHHHCCCEE--EeCCcc-C-------Cc--cCHHHHh------hc-cCCCEEEEecCC-CCCCCCCCCCcCC----
Confidence 6777778888765 777533 1 11 2222210 13 468999999996 2467788888642
Q ss_pred CCCCCcEEecccCC--------------CCCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEecC
Q 025254 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (255)
Q Consensus 166 ~~~~~~~~~~~~~~--------------~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~~ 219 (255)
..++...++. ......+++|+|||+|.+|+|+|..+.++|. .|+++.|+.
T Consensus 541 ----~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 541 ----GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred ----CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 2344443221 1122358999999999999999999999997 588888865
No 63
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.5e-17 Score=132.45 Aligned_cols=178 Identities=19% Similarity=0.284 Sum_probs=137.1
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
+..+||+||||||+|-++|.+.+++|.+.-++-. .+||.-... +-. .. |.. -.+....++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT----~~I---EN---fIs-------v~~teGpkl~ 269 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDT----MGI---EN---FIS-------VPETEGPKLA 269 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccc----cch---hh---eec-------cccccchHHH
Confidence 3579999999999999999999999998755522 355532111 100 00 000 1123456888
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCC-CCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~ 163 (255)
..+.+.++++.+.+ ....+.+++.+... .+...|++.++ .. ++++.+|+|||+..+ -..+||.++|
T Consensus 270 ~ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG-------av-LkaktvIlstGArWR--n~nvPGE~e~- 336 (520)
T COG3634 270 AALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG-------AV-LKARTVILATGARWR--NMNVPGEDEY- 336 (520)
T ss_pred HHHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC-------ce-eccceEEEecCcchh--cCCCCchHHH-
Confidence 89999999998876 77778888887532 24678888886 77 999999999996322 2467899998
Q ss_pred cCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
....+..+..++...+.+|+|+|||||.||+|+|..|+-.-..||+++..+
T Consensus 337 -----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 337 -----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred -----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 888889999999999999999999999999999999999889999998876
No 64
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.74 E-value=2.5e-17 Score=133.94 Aligned_cols=208 Identities=14% Similarity=0.119 Sum_probs=129.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc-cccCCCCCeEEecccccccCCCC-CCCC----CCCCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFCQLPHL-PFPS----SYPMFVS 79 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 79 (255)
..+||+|||+||+|..+|...++.|++.+++|+...+||. .+..+.+.-.+-....+|+.... .+.. -.+--.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 3589999999999999999999999999999999989883 33333332222111222221111 1000 0111234
Q ss_pred HHHHHHHHHHHHHhcC--CCCeeEeccEEEEEEE---cCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 80 RAQFIEHLDHYVSHFN--IGPSIRYQRSVESASY---DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 80 ~~~~~~~l~~~~~~~~--l~~~~~~~~~v~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
.+.++....+.+++.. +.. .+-..+|+-+.- ..+.....+.-.++ +... ++++++|+||| |. .+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~-lfkknkV~~~kG~gsf~~p~~V~v~k~dg-----~~~i-i~aKnIiiATG--Se--V~ 186 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIEN-LFKKNKVTYVKGFGSFLDPNKVSVKKIDG-----EDQI-IKAKNIIIATG--SE--VT 186 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHH-HhhhcCeEEEeeeEeecCCceEEEeccCC-----CceE-EeeeeEEEEeC--Cc--cC
Confidence 4455555555444431 111 011112322221 11123444444444 3378 99999999999 42 34
Q ss_pred CCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccccccCCc
Q 025254 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQVWDPQ 232 (255)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~ 232 (255)
++||+.- ++..+.+++-......-+++++|||+|.+|.|+..-+.++|.+||+++..+ .+.+..|.....
T Consensus 187 ~~PGI~I-------DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk 256 (506)
T KOG1335|consen 187 PFPGITI-------DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISK 256 (506)
T ss_pred CCCCeEe-------cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHH
Confidence 4566643 444555555555566779999999999999999999999999999999998 777776655443
No 65
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.73 E-value=4.9e-17 Score=150.44 Aligned_cols=162 Identities=22% Similarity=0.303 Sum_probs=105.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+||..... . +.+....+..++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------I---------P~~rlp~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------I---------PEFRISAESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------c---------cccCCCHHHHHH
Confidence 5799999999999999999999999999999998888753211 0 111111244444
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~~ 166 (255)
..+.+...++.+ +.+.. .. +.+... .. ..+|+||+|||++ .+..+.++|...
T Consensus 593 ~ie~l~~~GVe~--~~g~~----------~d--~~ve~l-------~~-~gYDaVIIATGA~-~~~~l~I~G~~~----- 644 (1012)
T TIGR03315 593 DIELVKFHGVEF--KYGCS----------PD--LTVAEL-------KN-QGYKYVILAIGAW-KHGPLRLEGGGE----- 644 (1012)
T ss_pred HHHHHHhcCcEE--EEecc----------cc--eEhhhh-------hc-ccccEEEECCCCC-CCCCCCcCCCCc-----
Confidence 455566667654 55421 01 111111 34 5689999999963 233445555321
Q ss_pred CCCCcEEecccCCC------CCCCCCCeEEEEcCCcCHHHHHHHHhhh-cC-eEEEEEecCceeec
Q 025254 167 TGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVVRSPACLWR 224 (255)
Q Consensus 167 ~~~~~~~~~~~~~~------~~~~~~~~v~ViG~g~~~~e~a~~l~~~-g~-~v~~~~r~~~~~~~ 224 (255)
.++...++.. .....+++|+|||+|.+|+|+|..+.+. |. +|+++.|+....+|
T Consensus 645 ----~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mp 706 (1012)
T TIGR03315 645 ----RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMP 706 (1012)
T ss_pred ----ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccc
Confidence 1222222211 1223589999999999999999998887 75 79999998744444
No 66
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.72 E-value=6.4e-17 Score=140.89 Aligned_cols=187 Identities=16% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCCCCCeEEeccccccc----CCCCCCCCCCCCCCCHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA 81 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (255)
++|++|||+|++|..+|.. ..|.+|+|||+.. +|| +-+..+.|...+........ ...+..... ..-++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 5899999999999988654 4699999999965 666 33333333322111111110 011111100 0012333
Q ss_pred HHHHHHHH-HHHh--------------cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 025254 82 QFIEHLDH-YVSH--------------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG 146 (255)
Q Consensus 82 ~~~~~l~~-~~~~--------------~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG 146 (255)
.+.++... .... .++++ ..+..+.. +..+|.+.++ .+ ++||+||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~~~~~-------~~~~V~~~~g-------~~-~~~d~lIiATG 140 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDV--YDGHARFV-------GPRTLRTGDG-------EE-ITGDQIVIAAG 140 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEE--EEEEEEEe-------cCCEEEECCC-------cE-EEeCEEEEEEC
Confidence 33333222 1111 22221 22221111 2344665442 57 89999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 147 ETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 147 ~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
+.|..|+..+... .......+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++..
T Consensus 141 --s~p~~p~~~~~~~--------~~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~ 208 (452)
T TIGR03452 141 --SRPYIPPAIADSG--------VRYHTNEDIMR-LPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHL 208 (452)
T ss_pred --CCCCCCCCCCCCC--------CEEEcHHHHHh-hhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-cccccc
Confidence 7777775332111 11222222221 22247899999999999999999999999999999988 666643
No 67
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=1.3e-16 Score=131.10 Aligned_cols=200 Identities=25% Similarity=0.370 Sum_probs=136.1
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCC-CCeEEEeccCCCCcccccCCC-CCe--EEecccccccCCC--CCCC-------
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYSY-DRL--RLHLAKQFCQLPH--LPFP------- 71 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g-~~v~lie~~~~~g~~~~~~~~-~~~--~~~~~~~~~~~~~--~~~~------- 71 (255)
....|++.||-||.-|.+|..|...+ .++..+||.+.+ .|...|. +.. .....+.+.+..+ .++.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 35789999999999999999999875 689999998876 5766543 111 1111111111111 1110
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEE--EEEcccCCCCceeeEEEeeCEE
Q 025254 72 --------SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN--VKASNLLSPGREIEEYYSGRFL 141 (255)
Q Consensus 72 --------~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~--v~~~~~~~~~~~~~~~i~~d~v 141 (255)
..-.-++++.++.+|+++.+.++. .. +++.+|+.|...+...... +.+.+. .. ++|+.|
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~-~~--rfg~~V~~i~~~~~d~~~~~~~~t~~~-------~~-y~ar~l 149 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQLP-SL--RFGEEVTDISSLDGDAVVRLFVVTANG-------TV-YRARNL 149 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhCC-cc--ccCCeeccccccCCcceeEEEEEcCCC-------cE-EEeeeE
Confidence 111245889999999999999884 23 9999999773333222332 223332 57 999999
Q ss_pred EEeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCCC-CCCC-CCeEEEEcCCcCHHHHHHHHhhh----cCeEEEE
Q 025254 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNG-KPYG-GKNVLVVGSGNSGMEIALDLANH----AAKTSLV 215 (255)
Q Consensus 142 ViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~ViG~g~~~~e~a~~l~~~----g~~v~~~ 215 (255)
|+++| .+|.+|+. ...+. .++++|+.++... .+.. .++|+|||+|.||+|+...|... ..++.|+
T Consensus 150 Vlg~G--~~P~IP~~--f~~l~-----~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~wi 220 (436)
T COG3486 150 VLGVG--TQPYIPPC--FRSLI-----GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWI 220 (436)
T ss_pred EEccC--CCcCCChH--HhCcC-----ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceee
Confidence 99999 88998864 22330 3478999998753 2233 34499999999999999999876 3458999
Q ss_pred EecCceeecccc
Q 025254 216 VRSPACLWRFEQ 227 (255)
Q Consensus 216 ~r~~~~~~~~~~ 227 (255)
.|+. .++|.+.
T Consensus 221 tR~~-gf~p~d~ 231 (436)
T COG3486 221 TRSS-GFLPMDY 231 (436)
T ss_pred eccC-CCCcccc
Confidence 9999 7777543
No 68
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.71 E-value=7.1e-17 Score=141.32 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=106.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+... + +.+....++..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHH
Confidence 35799999999999999999999999999999999888765421 1 11111234555
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+...++.+ +.++.+.. + +.... .. ..+|.||+|+|+. .+..+.++|.+.
T Consensus 198 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~--------~~-~~~d~vvlAtGa~-~~~~l~ipG~~~---- 251 (471)
T PRK12810 198 RRIELMEAEGIEF--RTNVEVGK-D---------ITAEE--------LL-AEYDAVFLGTGAY-KPRDLGIPGRDL---- 251 (471)
T ss_pred HHHHHHHhCCcEE--EeCCEECC-c---------CCHHH--------HH-hhCCEEEEecCCC-CCCcCCCCCccC----
Confidence 5556677777665 77765421 0 11111 34 5789999999953 355667777542
Q ss_pred CCCCCcEEecccC-------------CCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEec
Q 025254 166 ATGTGEVIHSTQY-------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS 218 (255)
Q Consensus 166 ~~~~~~~~~~~~~-------------~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~ 218 (255)
. .++...++ .......+++++|||+|.+|+|+|..+.++|. +|+.+.+.
T Consensus 252 ---~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 252 ---D-GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred ---C-CcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 1 22222111 11123457899999999999999999888886 78855544
No 69
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.71 E-value=1.1e-16 Score=145.36 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=109.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+||||||+|+++|..|++.|++|+|+|+.+.+||.+.+.. +.+....++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gi------------------------p~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGI------------------------PAFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecC------------------------CCccCCHHHHH
Confidence 468999999999999999999999999999999998888654321 11111234555
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.++++|+.+ +.++.|.. . +.... .. ..||.|++|+|++ .+..+.++|.+.
T Consensus 382 ~~~~~~~~~Gv~~--~~~~~v~~--------~--i~~~~--------~~-~~~DavilAtGa~-~~~~l~i~g~~~---- 435 (654)
T PRK12769 382 RRREIFSAMGIEF--ELNCEVGK--------D--ISLES--------LL-EDYDAVFVGVGTY-RSMKAGLPNEDA---- 435 (654)
T ss_pred HHHHHHHHCCeEE--ECCCEeCC--------c--CCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCCC----
Confidence 5556677777655 77765521 0 11111 23 5789999999963 233445665432
Q ss_pred CCCCCcEEeccc--------------CCC--CCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEecCceeec
Q 025254 166 ATGTGEVIHSTQ--------------YKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPACLWR 224 (255)
Q Consensus 166 ~~~~~~~~~~~~--------------~~~--~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~ 224 (255)
.| ++...+ ... .....+++++|||+|.+|+|+|..+.++|. +|+++.|++...+|
T Consensus 436 ---~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~ 507 (654)
T PRK12769 436 ---PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMP 507 (654)
T ss_pred ---CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCC
Confidence 11 221110 000 012357899999999999999999999986 69999997633344
No 70
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.70 E-value=1.7e-16 Score=138.64 Aligned_cols=165 Identities=17% Similarity=0.224 Sum_probs=111.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||+|++|+++|..|++.|++|+++|+.+.+||.+.+. + +.+....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHHH
Confidence 46899999999999999999999999999999999888765421 1 11111235566
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+++.+.|+.+ +.++.+.. . +...+ .. ..+|.||+|||+... ..++++|.+..
T Consensus 196 ~~~~~~~~~Gv~~--~~~~~v~~--------~--~~~~~--------~~-~~~D~vilAtGa~~~-~~~~i~g~~~~--- 250 (467)
T TIGR01318 196 RRREIFTAMGIEF--HLNCEVGR--------D--ISLDD--------LL-EDYDAVFLGVGTYRS-MRGGLPGEDAP--- 250 (467)
T ss_pred HHHHHHHHCCCEE--ECCCEeCC--------c--cCHHH--------HH-hcCCEEEEEeCCCCC-CcCCCCCcCCC---
Confidence 6667778888765 77776621 0 11222 33 578999999995322 33456665421
Q ss_pred CCCCCcEEecccC-----------C---C--CCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEecCceeec
Q 025254 166 ATGTGEVIHSTQY-----------K---N--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPACLWR 224 (255)
Q Consensus 166 ~~~~~~~~~~~~~-----------~---~--~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~ 224 (255)
.+++..++ . . .....+++++|||+|.+|+|+|..+.++|. +|+++.|++...+|
T Consensus 251 -----gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~ 321 (467)
T TIGR01318 251 -----GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMP 321 (467)
T ss_pred -----CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCC
Confidence 12221110 0 0 012357899999999999999999999995 79999997633344
No 71
>PRK09897 hypothetical protein; Provisional
Probab=99.69 E-value=1.1e-15 Score=134.10 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=119.7
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCCc--ccccCCC-CCeEEecc--------cccccCCCCC-----
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS--IWKKYSY-DRLRLHLA--------KQFCQLPHLP----- 69 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g~--~~~~~~~-~~~~~~~~--------~~~~~~~~~~----- 69 (255)
++|+|||||++|+++|..|.+.+ .+|+|||+...+|. .|..... +.+..+.. ..+..+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998764 48999999887763 3443211 11111211 1111110000
Q ss_pred ----C---CCCCCCCCCHHHHHHHHHHHHHhc-------CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEE
Q 025254 70 ----F---PSSYPMFVSRAQFIEHLDHYVSHF-------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (255)
Q Consensus 70 ----~---~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (255)
. ......|+++..+.+|+.+.+... ++.+.++.+++|+++...+ +.+.|++.++. ..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg------~~- 152 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL------PS- 152 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC------eE-
Confidence 0 001235777777777766644432 3334457788999998876 67877765421 56
Q ss_pred EeeCEEEEeecCCCCCCCCCCCCccccccCCCCCCcEEecccCCC--CCCCCCCeEEEEcCCcCHHHHHHHHhhhc----
Q 025254 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHA---- 209 (255)
Q Consensus 136 i~~d~vViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~ViG~g~~~~e~a~~l~~~g---- 209 (255)
+.+|.||+|+|+. .|..+ ++...+ ....+.. .....+.+|+|+|.|++++|++..|...|
T Consensus 153 i~aD~VVLAtGh~-~p~~~--~~~~~y-----------i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~ 218 (534)
T PRK09897 153 ETFDLAVIATGHV-WPDEE--EATRTY-----------FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI 218 (534)
T ss_pred EEcCEEEECCCCC-CCCCC--hhhccc-----------cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCcee
Confidence 8999999999973 22221 111111 1111111 11223689999999999999999987552
Q ss_pred -----------------CeEEEEEecCceeecccc
Q 025254 210 -----------------AKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 210 -----------------~~v~~~~r~~~~~~~~~~ 227 (255)
.++++++|+. ++|..+
T Consensus 219 ~~~~~~~~l~y~~sg~~~~I~a~SRrG--l~P~~~ 251 (534)
T PRK09897 219 EDDKQHVVFHRDNASEKLNITLMSRTG--ILPEAD 251 (534)
T ss_pred ccCCCcceeeecCCCCCceEEEEeCCC--CCCccc
Confidence 3688888887 566554
No 72
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-15 Score=122.88 Aligned_cols=196 Identities=20% Similarity=0.253 Sum_probs=121.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC--CCCcccccCCCCCeEEecccccccCCC-----------CCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASIWKKYSYDRLRLHLAKQFCQLPH-----------LPFPS 72 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 72 (255)
..+|++|||||.+||+||..++..|.+|.++|--. ..|..|-...--.-.-=+|+.+|+... +.+.-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~ 97 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNV 97 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 46899999999999999999999999999998633 134455431100000001111111110 01100
Q ss_pred CC-CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCC----CCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 73 SY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA----TNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 73 ~~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~----~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
.. .--++...+.+-.++.+...+.-..+.++. ..+.+.+. .+..++...+... ++.. +.++++|+|||
T Consensus 98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~~h~I~at~~~g---k~~~-~ta~~fvIatG- 170 (503)
T KOG4716|consen 98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVDPHKIKATNKKG---KERF-LTAENFVIATG- 170 (503)
T ss_pred ccccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecccceEEEecCCC---ceEE-eecceEEEEec-
Confidence 00 011233456666666666665433222221 22222221 1223344433322 3466 99999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 148 ~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+|..|++||..++ -+.+.+... ..+.+.+.+|||+|++|.|.|.+|+..|.+|+++.|+=
T Consensus 171 -~RPrYp~IpG~~Ey---------~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI 231 (503)
T KOG4716|consen 171 -LRPRYPDIPGAKEY---------GITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI 231 (503)
T ss_pred -CCCCCCCCCCceee---------eeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe
Confidence 89999999998776 255555444 56667788999999999999999999999999999984
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.67 E-value=2.2e-15 Score=142.02 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=112.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.+||+||||||+|+++|..|++.|.+|+|+|+.+.+||.+..... ..+. .+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~---------------------~~~g-~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE---------------------TIDG-KPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc---------------------ccCC-ccHHHHHHH
Confidence 579999999999999999999999999999999988886532100 0000 122344333
Q ss_pred HHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEE-Ec-------ccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCC
Q 025254 87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVK-AS-------NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (255)
Q Consensus 87 l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~-~~-------~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~ 157 (255)
+.+.+..+ ++.+ +.+++|.++.... ....+. .. ..... ..... +++|.||+||| +.+..|+++
T Consensus 221 ~~~~l~~~~~v~v--~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~-~~~~~-i~a~~VILATG--a~~r~~pip 292 (985)
T TIGR01372 221 TVAELTAMPEVTL--LPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPR-ERLWR-IRAKRVVLATG--AHERPLVFA 292 (985)
T ss_pred HHHHHhcCCCcEE--EcCCEEEEEecCC--eEEEEEEeeeccccccCCccc-cceEE-EEcCEEEEcCC--CCCcCCCCC
Confidence 44444444 3544 8888888774311 111110 00 00000 01137 89999999999 667777788
Q ss_pred CccccccCCCCCCcEEecc---cCCC-CCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEecC
Q 025254 158 GLCSFCSSATGTGEVIHST---QYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (255)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~~ 219 (255)
|.+. .+ ++... .+.. .....+++++|||+|.+++|+|..|.+.|. .|+++.+++
T Consensus 293 G~~~-------pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 293 NNDR-------PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCCC-------CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 8643 22 22221 1111 122357899999999999999999999995 578887765
No 74
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.67 E-value=6.7e-16 Score=139.67 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=111.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||+|++|+++|..|++.|++|+++|+.+.+||.+.+... .+. .+ .++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip---------------~~~--------l~-~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIP---------------PFK--------LD-KTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCC---------------ccc--------CC-HHHHH
Confidence 4689999999999999999999999999999999999887654321 111 11 34555
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+...|+.+ ++++++.. . +.+.+ .. ..+|.|++|+|+. .+..+.++|.+.
T Consensus 365 ~~~~~~~~~Gv~~--~~~~~v~~--------~--~~~~~--------l~-~~~DaV~latGa~-~~~~~~i~g~~~---- 418 (639)
T PRK12809 365 QRREIFTAMGIDF--HLNCEIGR--------D--ITFSD--------LT-SEYDAVFIGVGTY-GMMRADLPHEDA---- 418 (639)
T ss_pred HHHHHHHHCCeEE--EcCCccCC--------c--CCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCcc----
Confidence 5566777778765 77765521 0 12222 33 5689999999963 233455666532
Q ss_pred CCCCCcEEeccc-----------CCC-----CCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEecCceeec
Q 025254 166 ATGTGEVIHSTQ-----------YKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPACLWR 224 (255)
Q Consensus 166 ~~~~~~~~~~~~-----------~~~-----~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~ 224 (255)
.+ ++...+ ... .....+++++|||+|.+++|.|..+.++|. +|+++.|++...+|
T Consensus 419 ---~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~ 490 (639)
T PRK12809 419 ---PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMP 490 (639)
T ss_pred ---CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 12 222100 000 012357899999999999999999999985 79999997633244
No 75
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.67 E-value=6.8e-16 Score=131.19 Aligned_cols=167 Identities=17% Similarity=0.254 Sum_probs=108.3
Q ss_pred eEEEECCCHHHHHHHHHHhhC---CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 9 EVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
+|||||||++|+.+|..|.++ +.+|+|||+..... |..+ .+.......+..++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence 589999999999999999654 57999999887421 1000 0000011122334444
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
.+.+.+++.++.+ . ..+|++++..+ . .|.+.++ .+ ++||+||+||| +.+..|.+||..+.
T Consensus 59 ~~~~~~~~~gv~~--~-~~~v~~id~~~--~--~V~~~~g-------~~-~~yD~LviAtG--~~~~~~~i~g~~~~--- 118 (364)
T TIGR03169 59 DLRRLARQAGARF--V-IAEATGIDPDR--R--KVLLANR-------PP-LSYDVLSLDVG--STTPLSGVEGAADL--- 118 (364)
T ss_pred cHHHHHHhcCCEE--E-EEEEEEEeccc--C--EEEECCC-------Cc-ccccEEEEccC--CCCCCCCCCccccc---
Confidence 5556667777663 4 45899998765 3 4666553 56 89999999999 77778888874322
Q ss_pred CCCCCcEEeccc----------CCCC--CCCCCCeEEEEcCCcCHHHHHHHHhhh----c--CeEEEEEecCceeecc
Q 025254 166 ATGTGEVIHSTQ----------YKNG--KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVVRSPACLWRF 225 (255)
Q Consensus 166 ~~~~~~~~~~~~----------~~~~--~~~~~~~v~ViG~g~~~~e~a~~l~~~----g--~~v~~~~r~~~~~~~~ 225 (255)
++.... .... ....+++++|||+|.+|+|+|..|.+. | .+|+++ +.+ .+++.
T Consensus 119 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~ 188 (364)
T TIGR03169 119 ------AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPG 188 (364)
T ss_pred ------ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-ccccc
Confidence 111110 0000 112357999999999999999999863 3 489998 544 45543
No 76
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.66 E-value=8.6e-16 Score=134.72 Aligned_cols=160 Identities=22% Similarity=0.256 Sum_probs=107.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||+|++|+.+|..|++.|++|+|+|+.+.+||...+. .+.+....++..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g------------------------ip~~~~~~~~~~ 197 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG------------------------IPNMKLDKAIVD 197 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc------------------------CCCccCCHHHHH
Confidence 34799999999999999999999999999999998877643221 111111124445
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.++..++.+ +.++.+. .. +.... .. ..||.|++|||+. .|..++++|.+.
T Consensus 198 ~~~~~~~~~Gv~~--~~~~~v~-~~---------~~~~~--------~~-~~~d~VilAtGa~-~~~~l~i~G~~~---- 251 (485)
T TIGR01317 198 RRIDLLSAEGIDF--VTNTEIG-VD---------ISADE--------LK-EQFDAVVLAGGAT-KPRDLPIPGREL---- 251 (485)
T ss_pred HHHHHHHhCCCEE--ECCCEeC-Cc---------cCHHH--------HH-hhCCEEEEccCCC-CCCcCCCCCcCC----
Confidence 5556667777665 7776663 10 11111 34 6789999999953 366777887542
Q ss_pred CCCCCcEEecccC--------C-------CCCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEecC
Q 025254 166 ATGTGEVIHSTQY--------K-------NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (255)
Q Consensus 166 ~~~~~~~~~~~~~--------~-------~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r~~ 219 (255)
.+ ++....+ . ......+++++|||+|.+|+|+|..+.++|. +|+++.+.+
T Consensus 252 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 252 ---KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred ---CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 12 2221110 0 0112457899999999999999888888874 799998876
No 77
>PRK13984 putative oxidoreductase; Provisional
Probab=99.64 E-value=2e-15 Score=136.22 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=105.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||+|++|+++|..|.+.|++|+|+|+.+..+|.+.+. + +.+....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i---------~~~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------I---------PSYRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------C---------CcccCCHHHHH
Confidence 46899999999999999999999999999999999887754321 1 11111134445
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+++.++.+ +.++.|.. + +.... .. ..||+||+|||+. .+..++++|.+..
T Consensus 338 ~~~~~~~~~gv~~--~~~~~v~~----~------~~~~~--------~~-~~yD~vilAtGa~-~~r~l~i~G~~~~--- 392 (604)
T PRK13984 338 KDIAFIEALGVKI--HLNTRVGK----D------IPLEE--------LR-EKHDAVFLSTGFT-LGRSTRIPGTDHP--- 392 (604)
T ss_pred HHHHHHHHCCcEE--ECCCEeCC----c------CCHHH--------HH-hcCCEEEEEcCcC-CCccCCCCCcCCc---
Confidence 5556677777665 77766621 0 11111 34 6799999999952 3566777776421
Q ss_pred CCCCCcEEecccCCC----------CCCCCCCeEEEEcCCcCHHHHHHHHhhhcC------eEEEEE
Q 025254 166 ATGTGEVIHSTQYKN----------GKPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVV 216 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~----------~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~------~v~~~~ 216 (255)
.++...++.. .....+++++|||+|.+|+|+|..+.+++. +|+++.
T Consensus 393 -----gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 393 -----DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred -----CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 2333222211 011236899999999999999999998753 678764
No 78
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.61 E-value=1.7e-14 Score=123.80 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=98.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHh-hCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~-~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
.+++|+||||||+|+++|..|+ +.|++|+|+|+.+.++|.+++..- +.++..+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~ 94 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTY 94 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHH
Confidence 4689999999999999999875 569999999999999988764421 2223445666
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC----------
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP---------- 154 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~---------- 154 (255)
..+...+...++.. +.+.++. . .++... -. -++|.||+|+|+. ...+|
T Consensus 95 ~~f~~~~~~~~v~f--~gnv~VG-----~-----Dvt~ee--------L~-~~YDAVIlAtGA~-~l~ipi~~~~~~~~~ 152 (506)
T PTZ00188 95 KTFDPVFLSPNYRF--FGNVHVG-----V-----DLKMEE--------LR-NHYNCVIFCCGAS-EVSIPIGQQDEDKAV 152 (506)
T ss_pred HHHHHHHhhCCeEE--EeeeEec-----C-----ccCHHH--------HH-hcCCEEEEEcCCC-CCCCCcccccceeee
Confidence 66665555444432 3222221 0 022222 33 5789999999964 22222
Q ss_pred --C------CCCccccccCCCCCCcEEecccCCCC----CC------C-CCCeEEEEcCCcCHHHHHHHHh---------
Q 025254 155 --D------IRGLCSFCSSATGTGEVIHSTQYKNG----KP------Y-GGKNVLVVGSGNSGMEIALDLA--------- 206 (255)
Q Consensus 155 --~------~~g~~~~~~~~~~~~~~~~~~~~~~~----~~------~-~~~~v~ViG~g~~~~e~a~~l~--------- 206 (255)
. ++|.... ...+.......+. .. + ..++++|||.|++|+|+|..|.
T Consensus 153 ~GGe~~~~~l~Gvf~A------~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~T 226 (506)
T PTZ00188 153 SGGETNPRKQNGIFHA------RDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKT 226 (506)
T ss_pred ccccccccccCcEEeh------heEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcC
Confidence 1 1121110 0111111111100 01 1 4568999999999999999753
Q ss_pred -----------hhc-CeEEEEEecC
Q 025254 207 -----------NHA-AKTSLVVRSP 219 (255)
Q Consensus 207 -----------~~g-~~v~~~~r~~ 219 (255)
+.. .+|+++.|+.
T Consensus 227 DI~~~aL~~L~~s~v~~V~ivgRRG 251 (506)
T PTZ00188 227 DISSDYLKVIKRHNIKHIYIVGRRG 251 (506)
T ss_pred CCcHHHHHHHHhCCCcEEEEEEecC
Confidence 223 3699999996
No 79
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.61 E-value=6.3e-15 Score=120.00 Aligned_cols=160 Identities=21% Similarity=0.197 Sum_probs=112.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (255)
...+|+|||+||||+++|..|+++ +.+|.|+|+.+.+.|..++. -.|.++..+.+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG-----------------------VAPDHpEvKnv 75 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG-----------------------VAPDHPEVKNV 75 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec-----------------------cCCCCcchhhH
Confidence 446999999999999999999984 68999999999887765543 23445666677
Q ss_pred HHHHHHHHHhcCCCCeeEeccEE-EEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccc
Q 025254 84 IEHLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF 162 (255)
Q Consensus 84 ~~~l~~~~~~~~l~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~ 162 (255)
.+.+...+++..+.. ..|.+| .. +.+.. -+ -.||.||+|.|+ ..+...++||.+..
T Consensus 76 intFt~~aE~~rfsf--~gNv~vG~d-----------vsl~e--------L~-~~ydavvLaYGa-~~dR~L~IPGe~l~ 132 (468)
T KOG1800|consen 76 INTFTKTAEHERFSF--FGNVKVGRD-----------VSLKE--------LT-DNYDAVVLAYGA-DGDRRLDIPGEELS 132 (468)
T ss_pred HHHHHHHhhccceEE--Eecceeccc-----------ccHHH--------Hh-hcccEEEEEecC-CCCcccCCCCcccc
Confidence 777888888755443 444444 11 23322 34 578999999998 45667888887521
Q ss_pred ccCCCCCCcEEecccCC-----------CCCCCCCCeEEEEcCCcCHHHHHHHHhhh----------------------c
Q 025254 163 CSSATGTGEVIHSTQYK-----------NGKPYGGKNVLVVGSGNSGMEIALDLANH----------------------A 209 (255)
Q Consensus 163 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~ViG~g~~~~e~a~~l~~~----------------------g 209 (255)
.++....+. ....+..+.++|||.|.+++|+|..|... -
T Consensus 133 --------~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~V 204 (468)
T KOG1800|consen 133 --------GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNV 204 (468)
T ss_pred --------cceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCc
Confidence 233333221 12344578999999999999999988521 2
Q ss_pred CeEEEEEecC
Q 025254 210 AKTSLVVRSP 219 (255)
Q Consensus 210 ~~v~~~~r~~ 219 (255)
.+|+|+.|+.
T Consensus 205 kdV~lvgRRg 214 (468)
T KOG1800|consen 205 KDVKLVGRRG 214 (468)
T ss_pred ceEEEEeccC
Confidence 4689999987
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.59 E-value=9.7e-15 Score=133.56 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=35.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..++|+||||||+|+++|+.|++.|++|+++|+.+..|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 568999999999999999999999999999999765443
No 81
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.59 E-value=3.9e-13 Score=113.64 Aligned_cols=205 Identities=17% Similarity=0.166 Sum_probs=127.7
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC---CCeEEEeccCCCCcccc-cCCCCCeEEecccccccCC--C-------------C
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQLP--H-------------L 68 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g---~~v~lie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~--~-------------~ 68 (255)
++|+|||+|++|+.+|.+|.+.- ..|+|+|+...+|+--. ....+..++|.+..-++.. + .
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 69999999999999999999862 24999999998876222 1212222222222222211 1 0
Q ss_pred ------CCCCCCCCCCCHHHHHHHHHHHHHhc---CCCC-eeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEee
Q 025254 69 ------PFPSSYPMFVSRAQFIEHLDHYVSHF---NIGP-SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (255)
Q Consensus 69 ------~~~~~~~~~~~~~~~~~~l~~~~~~~---~l~~-~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~ 138 (255)
....+-+.|+++..|.+|+.+++..+ +-.. ..+...+++++...++...+.+...++ .. ..|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-------~~-~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-------PS-EIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-------Ce-eee
Confidence 01123346788999999988876543 1111 115566778887775345666777665 66 789
Q ss_pred CEEEEeecCCCCCCCCCCCCccccccCCCCCC-cEEecccCCCC---CCCCCCeEEEEcCCcCHHHHHHHHhhhcC--eE
Q 025254 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTG-EVIHSTQYKNG---KPYGGKNVLVVGSGNSGMEIALDLANHAA--KT 212 (255)
Q Consensus 139 d~vViAtG~~s~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~v~ViG~g~~~~e~a~~l~~~g~--~v 212 (255)
|.+|+|||+. .|..+.. . ..+ .+ .-+....+... ......+|+|+|+|.+.+|....+...|. +|
T Consensus 154 d~~Vlatgh~-~~~~~~~-~-~~~------~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~I 224 (474)
T COG4529 154 DIIVLATGHS-APPADPA-A-RDL------KGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPI 224 (474)
T ss_pred eEEEEeccCC-CCCcchh-h-hcc------CCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccce
Confidence 9999999973 3322221 1 111 11 11222222221 22345679999999999999999999885 69
Q ss_pred EEEEecCceeeccccccCC
Q 025254 213 SLVVRSPACLWRFEQVWDP 231 (255)
Q Consensus 213 ~~~~r~~~~~~~~~~~~~~ 231 (255)
|+++|+. +.|..+...+
T Consensus 225 t~iSRrG--l~~~~h~~~~ 241 (474)
T COG4529 225 TAISRRG--LVPRPHIPVP 241 (474)
T ss_pred EEEeccc--cccCCCCCCC
Confidence 9999997 6665544443
No 82
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.57 E-value=2.5e-14 Score=128.04 Aligned_cols=159 Identities=21% Similarity=0.304 Sum_probs=105.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||+||+|+++|..|++.|++|+++|+.+.+||.+... + +.+.-..++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------I---------PAYRLPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------C---------CCccCCHHHHH
Confidence 46899999999999999999999999999999999888865421 1 11111124444
Q ss_pred HHHHHHHhcCCCCeeEeccEE-EEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 025254 86 HLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~ 164 (255)
...+.+.+.++.+ .++..+ .++.. .. .. ..+|.||+|+|+.. +....+++...
T Consensus 192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~-----------~~--------~~-~~~D~Vi~AtG~~~-~~~~~i~g~~~--- 245 (564)
T PRK12771 192 AEIQRILDLGVEV--RLGVRVGEDITL-----------EQ--------LE-GEFDAVFVAIGAQL-GKRLPIPGEDA--- 245 (564)
T ss_pred HHHHHHHHCCCEE--EeCCEECCcCCH-----------HH--------HH-hhCCEEEEeeCCCC-CCcCCCCCCcc---
Confidence 4445566677654 666544 22111 11 22 45799999999642 22334555321
Q ss_pred CCCCCCcEEecccCCC-----CCCCCCCeEEEEcCCcCHHHHHHHHhhhc-CeEEEEEecC
Q 025254 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (255)
Q Consensus 165 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~g~~~~e~a~~l~~~g-~~v~~~~r~~ 219 (255)
.+ ++....+.. .....+++++|||+|.+++|.+..+.+++ .+|+++.|.+
T Consensus 246 ----~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 246 ----AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred ----CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 12 222222111 12345789999999999999999999988 6799999876
No 83
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.57 E-value=4.9e-14 Score=116.30 Aligned_cols=135 Identities=17% Similarity=0.214 Sum_probs=94.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccc---------cCC--CCCeEEecc---cc----cccCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK---------KYS--YDRLRLHLA---KQ----FCQLPHL 68 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~---------~~~--~~~~~~~~~---~~----~~~~~~~ 68 (255)
.+||+||||||+||+||..+++.|.+|+|||+.+.+|.-.. .+. +.....+.+ +. +..|...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 58999999999999999999999999999999997774211 111 111111222 11 1111111
Q ss_pred CCC-----------C--CCCCCCC---HHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCcee
Q 025254 69 PFP-----------S--SYPMFVS---RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (255)
Q Consensus 69 ~~~-----------~--~~~~~~~---~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (255)
++. + .-.-|+. ...+.+.+...+++.++.+ +.+++|.+++.++ ..+.+.+.++
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g------- 151 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG------- 151 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence 000 0 0012332 5677888888899999887 9999999999987 7888998885
Q ss_pred eEEEeeCEEEEeecCCCCCCC
Q 025254 133 EEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 133 ~~~i~~d~vViAtG~~s~~~~ 153 (255)
.+ ++||.+|+|+|+.|.|..
T Consensus 152 ~~-i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 152 ET-VKCDSLILATGGKSWPKL 171 (408)
T ss_pred CE-EEccEEEEecCCcCCCCC
Confidence 57 999999999998877643
No 84
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.55 E-value=2.8e-14 Score=122.83 Aligned_cols=158 Identities=22% Similarity=0.267 Sum_probs=114.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+||||||+|+++|..|++.|++|+++|+.+..||...+. .|.+....++.+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------IP~~kl~k~i~d 177 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------IPDFKLPKDILD 177 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec------------------------CchhhccchHHH
Confidence 35899999999999999999999999999999999888864432 233344457888
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+.+++.|+++ +.++++-. .++... -. -++|.+++|+|. ..|...+++|.+.
T Consensus 178 ~~i~~l~~~Gv~~--~~~~~vG~----------~it~~~--------L~-~e~Dav~l~~G~-~~~~~l~i~g~d~---- 231 (457)
T COG0493 178 RRLELLERSGVEF--KLNVRVGR----------DITLEE--------LL-KEYDAVFLATGA-GKPRPLDIPGEDA---- 231 (457)
T ss_pred HHHHHHHHcCeEE--EEcceECC----------cCCHHH--------HH-HhhCEEEEeccc-cCCCCCCCCCcCC----
Confidence 8888899888655 88876621 133322 22 356999999997 4666677777652
Q ss_pred CCCCCcEEecccCCC--------------CCCCCCCeEEEEcCCcCHHHHHHHHhhhcC-eEEEEEe
Q 025254 166 ATGTGEVIHSTQYKN--------------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVR 217 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~--------------~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~~~~r 217 (255)
..+....++.. .....+++++|||+|.|++|++....++|+ +|+.+.+
T Consensus 232 ----~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~ 294 (457)
T COG0493 232 ----KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYR 294 (457)
T ss_pred ----CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecc
Confidence 12222332211 111234899999999999999999999997 6887753
No 85
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=116.11 Aligned_cols=173 Identities=24% Similarity=0.292 Sum_probs=121.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC--CeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
...++|||+|++|..|+.++.+.|. +++++-+...++ |+..+ ++. ... .....+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~--Ls~-------~~~-------~~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRAR--LSK-------FLL-------TVGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchh--ccc-------cee-------ecccccc
Confidence 4789999999999999999999976 788886655332 11110 000 000 0011222
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcccccc
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~ 164 (255)
....++.+..++.. ++++.|++++..+ . +|...++ .. ++++++++||| +.+.+|++||.+..
T Consensus 131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~--K--~l~~~~G-------e~-~kys~LilATG--s~~~~l~~pG~~~~-- 192 (478)
T KOG1336|consen 131 KRTPEFYKEKGIEL--ILGTSVVKADLAS--K--TLVLGNG-------ET-LKYSKLIIATG--SSAKTLDIPGVELK-- 192 (478)
T ss_pred ccChhhHhhcCceE--EEcceeEEeeccc--c--EEEeCCC-------ce-eecceEEEeec--CccccCCCCCcccc--
Confidence 22233556677776 9999999998865 3 3666665 77 99999999999 67889999997632
Q ss_pred CCCCCCcEEecccCCCC-----CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
++....+..+. ......+++++|+|..|+|++..+...+.+||++++.+ +++|+..
T Consensus 193 ------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf 253 (478)
T KOG1336|consen 193 ------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLF 253 (478)
T ss_pred ------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhh
Confidence 34444433221 11236789999999999999999999999999999999 8888643
No 86
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.51 E-value=1.6e-13 Score=117.17 Aligned_cols=134 Identities=21% Similarity=0.340 Sum_probs=74.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEec----ccccc-cC---CCC-----------
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL----AKQFC-QL---PHL----------- 68 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~----~~~~~-~~---~~~----------- 68 (255)
|||+|||||++||+||..|++.|.+|+|+|+++.+|.-........+.+.. ...+. .+ +.+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 699999999999999999999999999999999776411110000010000 00000 00 000
Q ss_pred -----------CCC--CCCCCCC---CHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCcee
Q 025254 69 -----------PFP--SSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (255)
Q Consensus 69 -----------~~~--~~~~~~~---~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (255)
+.. +.-.-|| ....+.+.|.+.+++.++++ +++++|.++...+ ++.+.|.+.+.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~------- 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG------- 150 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence 000 0011122 35677788888888888877 9999999999876 24488888432
Q ss_pred eEEEeeCEEEEeecCCCCCC
Q 025254 133 EEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 133 ~~~i~~d~vViAtG~~s~~~ 152 (255)
.. +.+|.||+|+|+.+.|.
T Consensus 151 ~~-~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 GE-YEADAVILATGGKSYPK 169 (409)
T ss_dssp EE-EEESEEEE----SSSGG
T ss_pred cc-ccCCEEEEecCCCCccc
Confidence 77 99999999999876654
No 87
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.47 E-value=1.3e-12 Score=97.54 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=90.4
Q ss_pred EEECCCHHHHHHHHHHhhC-----CCCeEEEeccCCC-CcccccCCCCCeEEecccccccCCCCCC--------------
Q 025254 11 IMVGAGTSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQLPHLPF-------------- 70 (255)
Q Consensus 11 vIIG~G~~Gl~~a~~l~~~-----g~~v~lie~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 70 (255)
+|||+|++|++++.+|.++ ..+|+|||+.+.. |+.|.....+...+|.+...++......
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999987 3489999997753 3477765444555555554444322111
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHhc------CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEE
Q 025254 71 ---PSSYPMFVSRAQFIEHLDHYVSHF------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (255)
Q Consensus 71 ---~~~~~~~~~~~~~~~~l~~~~~~~------~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~v 141 (255)
......|+++..+.+||.+.++.. ++.+. +...+|++++..+ +.+.|.+.++ .. +.+|.|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~-~~~~~V~~i~~~~--~~~~v~~~~g-------~~-~~~d~V 149 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVR-HVRAEVVDIRRDD--DGYRVVTADG-------QS-IRADAV 149 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEE-EEeeEEEEEEEcC--CcEEEEECCC-------CE-EEeCEE
Confidence 112346889999999999877653 33333 4566999999987 6688888775 67 899999
Q ss_pred EEeecC
Q 025254 142 VVASGE 147 (255)
Q Consensus 142 ViAtG~ 147 (255)
|+|+|+
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999995
No 88
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.46 E-value=3.4e-13 Score=111.64 Aligned_cols=191 Identities=17% Similarity=0.163 Sum_probs=116.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+++|||+|+|.+|.+++..|-..-++|+||.+...+-=+|. .|...-+-+...-+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------------------LpS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------------------LPSTTVGTVELRSIVE 111 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------------------cCCccccceeehhhhh
Confidence 468999999999999999999988999999988774311110 0111111122234444
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
-........+...+ .+.++.++++... +...+.....++. ..+.. +.||+||+|+| ..++.+++||..+++-
T Consensus 112 PIr~i~r~k~~~~~-y~eAec~~iDp~~--k~V~~~s~t~~~~-~~e~~-i~YDyLViA~G--A~~~TFgipGV~e~~~- 183 (491)
T KOG2495|consen 112 PIRAIARKKNGEVK-YLEAECTKIDPDN--KKVHCRSLTADSS-DKEFV-IGYDYLVIAVG--AEPNTFGIPGVEENAH- 183 (491)
T ss_pred hHHHHhhccCCCce-EEecccEeecccc--cEEEEeeeccCCC-cceee-ecccEEEEecc--CCCCCCCCCchhhchh-
Confidence 44444444432332 5556777777654 4433322221111 24578 99999999999 7778888888765410
Q ss_pred CCCCCcEEecccCC----------C------CCCCCCCeEEEEcCCcCHHHHHHHHhhh--------------cCeEEEE
Q 025254 166 ATGTGEVIHSTQYK----------N------GKPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLV 215 (255)
Q Consensus 166 ~~~~~~~~~~~~~~----------~------~~~~~~~~v~ViG~g~~~~e~a~~l~~~--------------g~~v~~~ 215 (255)
+...+-+...++ . ....+--+++|||||++|+|+|.+|+.. ..+||++
T Consensus 184 --FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLi 261 (491)
T KOG2495|consen 184 --FLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLI 261 (491)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEee
Confidence 011111111111 0 0111224689999999999999999752 3579999
Q ss_pred EecCceeecccccc
Q 025254 216 VRSPACLWRFEQVW 229 (255)
Q Consensus 216 ~r~~~~~~~~~~~~ 229 (255)
+-.+ .+|+..+..
T Consensus 262 EA~d-~iL~mFdkr 274 (491)
T KOG2495|consen 262 EAAD-HILNMFDKR 274 (491)
T ss_pred ccch-hHHHHHHHH
Confidence 9998 777765543
No 89
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.45 E-value=7.1e-13 Score=116.57 Aligned_cols=174 Identities=19% Similarity=0.179 Sum_probs=125.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC---CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (255)
+.+++|||.|++|..+..++++. -++|+++-..++++ |....+. .-.+.-.+..++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls--------------~vl~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLS--------------SVLAGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeec--------------cccCCCccHHHH
Confidence 46899999999999999999884 45899998877543 2221110 011111223344
Q ss_pred HHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccc
Q 025254 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (255)
Q Consensus 84 ~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~ 163 (255)
.-.-.++.++.++.. +.+.+|+.++..+ -.|....+ .. +.+|.||+||| |.|.++++||.+.+
T Consensus 62 ~l~~~dwy~~~~i~L--~~~~~v~~idr~~----k~V~t~~g-------~~-~~YDkLilATG--S~pfi~PiPG~~~~- 124 (793)
T COG1251 62 SLNRNDWYEENGITL--YTGEKVIQIDRAN----KVVTTDAG-------RT-VSYDKLIIATG--SYPFILPIPGSDLP- 124 (793)
T ss_pred hccchhhHHHcCcEE--EcCCeeEEeccCc----ceEEccCC-------cE-eecceeEEecC--ccccccCCCCCCCC-
Confidence 444456677778776 9999999998754 34666665 77 89999999999 88999999998754
Q ss_pred cCCCCCCcEEecccCCCC-----CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
.++...++.+- .....++.+|||+|.-|+|+|..|...|.+|++++-.+ +++.+.
T Consensus 125 -------~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQ 184 (793)
T COG1251 125 -------GVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQ 184 (793)
T ss_pred -------CeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHh
Confidence 34444443321 12234568999999999999999999999999999998 666544
No 90
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.43 E-value=2e-12 Score=106.55 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=84.9
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCC-----CCeEE-------e-cccccccCC----CCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY-----DRLRL-------H-LAKQFCQLP----HLPF 70 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~-----~~~~~-------~-~~~~~~~~~----~~~~ 70 (255)
+||+|||||++|+++|..|++.|.+|+|+|+....+..++.... ..+.. . ....++... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 59999999999999999999999999999999765432221100 00000 0 000000000 0001
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
+.......++..+.+.+.+.+.+.++.+ +++++|+++...+ +.+.+.+.+. ..+ +++|+||+|+|.++
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~------~~~-~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG------EGT-VTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc------cEE-EEeCEEEECCCcch
Confidence 1111122567788889989888877766 8999999998776 5555554431 167 99999999999765
No 91
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.40 E-value=7.5e-12 Score=107.31 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=83.6
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEecc-CCC---CcccccC--------------CCCCeEEecccccccCCCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCY---ASIWKKY--------------SYDRLRLHLAKQFCQLPHLP 69 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~-~~~---g~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 69 (255)
+||+||||||+|+++|..|++.|++|+|+|+. +.. ++..... .+..+....+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999997 211 1110000 11111111111000000001
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCC-CCceeeEEEeeCEEEEeecCC
Q 025254 70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS-PGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~-~~~~~~~~i~~d~vViAtG~~ 148 (255)
....+...+++..+.++|.+.+.+.++++ +. .+|+++...+ +.+.+++.++.. .+++..+ +++|.||.|+|..
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~-i~a~~VI~AdG~~ 154 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGGEKGS-VEADVVIGADGAN 154 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCCcceE-EEeCEEEECCCCC
Confidence 01111123678899999999988888764 44 4688887765 667777654210 0012367 9999999999986
Q ss_pred CC
Q 025254 149 TN 150 (255)
Q Consensus 149 s~ 150 (255)
|.
T Consensus 155 S~ 156 (388)
T TIGR02023 155 SP 156 (388)
T ss_pred cH
Confidence 63
No 92
>PRK08244 hypothetical protein; Provisional
Probab=99.40 E-value=8.7e-12 Score=110.20 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=83.9
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc------cccc--------CC----------CCCeEEecccccc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK--------YS----------YDRLRLHLAKQFC 63 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~------~~~~--------~~----------~~~~~~~~~~~~~ 63 (255)
+||+||||||+|+++|..|++.|.+|+|||+.+.... .+.. .. .............
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 7999999999999999999999999999999764321 0000 00 0001000000000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEE
Q 025254 64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (255)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vVi 143 (255)
.+.............++..+.+.+.+.+.+.++.+ +++++++++...+ +.+++++.+..+ ..+ +++|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~-i~a~~vVg 153 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEI--FRGAEVLAVRQDG--DGVEVVVRGPDG----LRT-LTSSYVVG 153 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEcC--CeEEEEEEeCCc----cEE-EEeCEEEE
Confidence 11100000011112456778888888888777665 9999999998766 566666543211 157 89999999
Q ss_pred eecCCC
Q 025254 144 ASGETT 149 (255)
Q Consensus 144 AtG~~s 149 (255)
|+|..|
T Consensus 154 ADG~~S 159 (493)
T PRK08244 154 ADGAGS 159 (493)
T ss_pred CCCCCh
Confidence 999876
No 93
>PRK06847 hypothetical protein; Provisional
Probab=99.40 E-value=1.2e-11 Score=105.60 Aligned_cols=133 Identities=19% Similarity=0.179 Sum_probs=86.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc------ccc--------CC----------CCCeEEecc--
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK--------YS----------YDRLRLHLA-- 59 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~------~~~--------~~----------~~~~~~~~~-- 59 (255)
..+||+|||||++|+++|..|++.|.+|+|+|+.+..... +.. .. .........
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 3579999999999999999999999999999998643210 000 00 011111100
Q ss_pred cccccCCCCCCC-CCC--CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEE
Q 025254 60 KQFCQLPHLPFP-SSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (255)
Q Consensus 60 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i 136 (255)
..+..++...+. ..+ .....+.++.+.+.+.+...++.+ +++++|+++...+ +.+.+.+.++ .+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~ 150 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADV--RLGTTVTAIEQDD--DGVTVTFSDG-------TT-G 150 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEE--EeCCEEEEEEEcC--CEEEEEEcCC-------CE-E
Confidence 001111100000 001 123457788888988888777665 9999999998765 5677777654 67 8
Q ss_pred eeCEEEEeecCCCC
Q 025254 137 SGRFLVVASGETTN 150 (255)
Q Consensus 137 ~~d~vViAtG~~s~ 150 (255)
.+|.||.|+|.+|.
T Consensus 151 ~ad~vI~AdG~~s~ 164 (375)
T PRK06847 151 RYDLVVGADGLYSK 164 (375)
T ss_pred EcCEEEECcCCCcc
Confidence 99999999998764
No 94
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.39 E-value=4.1e-12 Score=107.20 Aligned_cols=134 Identities=21% Similarity=0.222 Sum_probs=83.7
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc----------------------CC--CC--CeEEecc--
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK----------------------YS--YD--RLRLHLA-- 59 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~----------------------~~--~~--~~~~~~~-- 59 (255)
+||+|||||++|+++|..|++.|++|+|||+.+......+. .. .. .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 69999999999999999999999999999998754211000 00 00 0000000
Q ss_pred ---------cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCc
Q 025254 60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (255)
Q Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 130 (255)
.....+. ............+..+.+.|.+.+++.++.+ +++++++++..+. +..++.+....++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~~~~d~--~~~~~~~~~~~~g-- 154 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDI--RFGTRVVSIEQDD--DGVTVVVRDGEDG-- 154 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEE--EESEEEEEEEEET--TEEEEEEEETCTC--
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhh--eeeeecccccccc--cccccccccccCC--
Confidence 0000000 0000011122457789999999999888655 9999999998876 5555665554333
Q ss_pred eeeEEEeeCEEEEeecCCC
Q 025254 131 EIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 131 ~~~~~i~~d~vViAtG~~s 149 (255)
+..+ +++|.||.|+|.+|
T Consensus 155 ~~~~-i~adlvVgADG~~S 172 (356)
T PF01494_consen 155 EEET-IEADLVVGADGAHS 172 (356)
T ss_dssp EEEE-EEESEEEE-SGTT-
T ss_pred ceeE-EEEeeeecccCccc
Confidence 4468 99999999999876
No 95
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.39 E-value=3.3e-12 Score=110.91 Aligned_cols=159 Identities=16% Similarity=0.298 Sum_probs=99.6
Q ss_pred HHHHHHhhC--CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHhcCC
Q 025254 21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF-VSRAQFIEH-LDHYVSHFNI 96 (255)
Q Consensus 21 ~~a~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~l 96 (255)
++|.+|.+. ..+|+|||+.+... +.....+ ...... ....++..+ ..++..+.++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~--~~~~~l~-------------------~~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS--FANCGLP-------------------YVIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee--EEcCCCC-------------------eEeccccCCHHHcccCCHHHHHHhcCC
Confidence 367888776 46899999988542 1000000 000011 111222333 2334466776
Q ss_pred CCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEe--eCEEEEeecCCCCCCCCCCCCccccccCCCCCCcEEe
Q 025254 97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIH 174 (255)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~--~d~vViAtG~~s~~~~~~~~g~~~~~~~~~~~~~~~~ 174 (255)
.+ +.+++|++++..+ ..+.+.... ++ .. ++ ||+||+||| +.|..|+++|.+. ..++.
T Consensus 60 ~~--~~~~~V~~id~~~--~~v~~~~~~--~~----~~-~~~~yd~lIiATG--~~p~~~~i~G~~~--------~~v~~ 118 (427)
T TIGR03385 60 DV--KTNHEVIEVNDER--QTVVVRNNK--TN----ET-YEESYDYLILSPG--ASPIVPNIEGINL--------DIVFT 118 (427)
T ss_pred eE--EecCEEEEEECCC--CEEEEEECC--CC----CE-EecCCCEEEECCC--CCCCCCCCCCcCC--------CCEEE
Confidence 65 7889999998755 454443321 11 45 66 999999999 6788888888642 12333
Q ss_pred cccCCCC-------CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCcee
Q 025254 175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACL 222 (255)
Q Consensus 175 ~~~~~~~-------~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~ 222 (255)
....... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~ 172 (427)
T TIGR03385 119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE-RI 172 (427)
T ss_pred ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-cc
Confidence 3221110 11346899999999999999999999999999999987 44
No 96
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.39 E-value=6.7e-12 Score=101.17 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCC-CCCeEEecc-cccccCCCCCCCCCCC--CCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 80 (255)
..+||+||||||+|+++|..|++.|.+|+|+|+...+|+ .|.... ++....... ..+..--..++..... ...+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 358999999999999999999999999999999987765 443221 111111000 0011100111111111 12456
Q ss_pred HHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEccc------CCCCceeeEEEeeCEEEEeecCCC
Q 025254 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL------LSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~------~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
.++...+.+.+.+.++.+ +.+++|+++...++.....+.+... ... +..+ ++++.||+|||+++
T Consensus 104 ~~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~--~~~~-i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHV--DPLT-IEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCCC--CcEE-EEcCEEEEEeCCCc
Confidence 788888888888888776 8999999998755212222332211 000 2267 99999999999865
No 97
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.38 E-value=1.3e-11 Score=106.93 Aligned_cols=135 Identities=18% Similarity=0.137 Sum_probs=84.6
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc-------ccc---CCCCC---------eEEec---
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------WKK---YSYDR---------LRLHL--- 58 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~-------~~~---~~~~~---------~~~~~--- 58 (255)
|+. ..+||+||||||+|+++|..|++.|.+|+|+|+.+.++.. +.. ..++. .....
T Consensus 1 m~~--~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~ 78 (428)
T PRK10157 1 MSE--DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLA 78 (428)
T ss_pred CCc--ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEE
Confidence 643 3599999999999999999999999999999998755421 100 00000 00000
Q ss_pred ---ccccc--cCCCCCC-CCCCC-CCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCce
Q 025254 59 ---AKQFC--QLPHLPF-PSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (255)
Q Consensus 59 ---~~~~~--~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (255)
..... .+..... ..... ....+.++.++|.+.+.+.|+.+ +.+++|+++...+ +.+.+...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g------ 148 (428)
T PRK10157 79 FMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG------ 148 (428)
T ss_pred EEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC------
Confidence 00000 0000000 00011 12457788888999898888776 8999999998765 4443222222
Q ss_pred eeEEEeeCEEEEeecCCC
Q 025254 132 IEEYYSGRFLVVASGETT 149 (255)
Q Consensus 132 ~~~~i~~d~vViAtG~~s 149 (255)
.+ +.++.||+|+|.++
T Consensus 149 -~~-i~A~~VI~A~G~~s 164 (428)
T PRK10157 149 -DV-IEAKTVILADGVNS 164 (428)
T ss_pred -cE-EECCEEEEEeCCCH
Confidence 57 89999999999765
No 98
>PRK06834 hypothetical protein; Provisional
Probab=99.38 E-value=1.6e-11 Score=107.97 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=84.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC--c-----cccc--------CCCCCeE-----Eeccc-ccccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S-----IWKK--------YSYDRLR-----LHLAK-QFCQL 65 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g--~-----~~~~--------~~~~~~~-----~~~~~-~~~~~ 65 (255)
.+||+||||||+|+++|..|++.|.+|+|+|+.+... + .+.. ..++.+. ..... ....+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4899999999999999999999999999999976421 1 1100 0000000 00000 00001
Q ss_pred CCCCCCC--CCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEE
Q 025254 66 PHLPFPS--SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (255)
Q Consensus 66 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vVi 143 (255)
.....+. .......+..+.+.+.+.+++.++.+ +++++|+++...+ +.+.+++.++ .+ +++|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~v~~~~--~~v~v~~~~g-------~~-i~a~~vVg 150 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI--YRGREVTGFAQDD--TGVDVELSDG-------RT-LRAQYLVG 150 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-------CE-EEeCEEEE
Confidence 0000111 11122446677788888888877665 9999999998876 5677766442 57 89999999
Q ss_pred eecCCCC
Q 025254 144 ASGETTN 150 (255)
Q Consensus 144 AtG~~s~ 150 (255)
|+|.+|.
T Consensus 151 ADG~~S~ 157 (488)
T PRK06834 151 CDGGRSL 157 (488)
T ss_pred ecCCCCC
Confidence 9998763
No 99
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.37 E-value=2.3e-13 Score=105.92 Aligned_cols=150 Identities=21% Similarity=0.246 Sum_probs=85.4
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH---
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE--- 85 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (255)
||+|||||++|+.+|..|++.+.+++++|+.+..... .......... ........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~~~~~~~~------------------~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGCIPSPLLV------------------EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSHHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-cccccccccc------------------cccccccccccccc
Confidence 7999999999999999999999999999886632210 0000000000 00000001110
Q ss_pred -HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCc-----EEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCc
Q 025254 86 -HLDHYVSHFNIGPSIRYQRSVESASYDEATNM-----WNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL 159 (255)
Q Consensus 86 -~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~-----~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~ 159 (255)
.+.+.+...++.+ +.+.++.+++... .. ..+...... +..+ +.||+||+||| +.|.+|.+||.
T Consensus 62 ~~~~~~~~~~~v~~--~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~----~~~~-~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEI--RLNAKVVSIDPES--KRVVCPAVTIQVVETG----DGRE-IKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEE--EHHHTEEEEEEST--TEEEETCEEEEEEETT----TEEE-EEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccceEEE--eeccccccccccc--cccccCcccceeeccC----CceE-ecCCeeeecCc--cccceeecCCC
Confidence 2222234455554 7889999998876 42 223221111 2278 99999999999 77888888886
Q ss_pred cccccCCCCCCcEEecccCCCCCCCCCCeEEEEc
Q 025254 160 CSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG 193 (255)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG 193 (255)
+.. .....+.....+.. ....+++++|||
T Consensus 131 ~~~----~~~~~~~~~~~~~~-~~~~~~~v~VvG 159 (201)
T PF07992_consen 131 EVA----YFLRGVDDAQRFLE-LLESPKRVAVVG 159 (201)
T ss_dssp TTE----CBTTSEEHHHHHHT-HSSTTSEEEEES
T ss_pred ccc----cccccccccccccc-cccccccccccc
Confidence 211 00122333333333 222345999999
No 100
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.37 E-value=1.3e-11 Score=99.21 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=87.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCC-CCCeEEec-ccccccCCCCCCCCCCC--CCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYS-YDRLRLHL-AKQFCQLPHLPFPSSYP--MFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~ 80 (255)
..+||+|||||++|+++|..|++.|.+|+|+||...+|+ .|.... ++.+.... ...+......++..... ...+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 368999999999999999999999999999999988764 554321 11111110 01111111111111111 12356
Q ss_pred HHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCC-CcEEEEEcccC---CC-CceeeEEEeeCEEEEeecCCC
Q 025254 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLL---SP-GREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~-~~~~v~~~~~~---~~-~~~~~~~i~~d~vViAtG~~s 149 (255)
.++...+.+.+.+.++++ +.++.|.++...++. ....|.+.... .+ ..+..+ ++++.||.|||+.+
T Consensus 100 ~el~~~L~~~a~e~GV~I--~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~-i~Ak~VVdATG~~a 170 (254)
T TIGR00292 100 AEFISTLASKALQAGAKI--FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT-QRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE-EEcCEEEEeecCCc
Confidence 688888888888888765 899999999886621 12223332110 00 002367 99999999999754
No 101
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.36 E-value=3.6e-11 Score=107.34 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=87.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc--------------CC----------CCCeEEecc--
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YS----------YDRLRLHLA-- 59 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~--------------~~----------~~~~~~~~~-- 59 (255)
..+||+|||||++|+++|..|++.|.+|+|+|+.+......+. .. .........
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 4689999999999999999999999999999998754321100 00 111111110
Q ss_pred cccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEE
Q 025254 60 KQFCQLPH-LPFPSSYP--MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (255)
Q Consensus 60 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (255)
.....+.. ......++ ....+..+.+.|.+.+.+. ++.+ +++++|+++...+ +.+++++.+.. + ++.+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v--~~g~~v~~i~~~~--~~v~v~~~~~~-G--~~~~- 160 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRV--RFGHEVTALTQDD--DGVTVTLTDAD-G--QRET- 160 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEE--EcCCEEEEEEEcC--CeEEEEEEcCC-C--CEEE-
Confidence 01111111 00000111 2235667778888877664 6555 9999999999876 66777775421 1 3367
Q ss_pred EeeCEEEEeecCCCC
Q 025254 136 YSGRFLVVASGETTN 150 (255)
Q Consensus 136 i~~d~vViAtG~~s~ 150 (255)
+++|+||.|+|..|.
T Consensus 161 i~ad~vVgADG~~S~ 175 (538)
T PRK06183 161 VRARYVVGCDGANSF 175 (538)
T ss_pred EEEEEEEecCCCchh
Confidence 999999999998764
No 102
>PRK06184 hypothetical protein; Provisional
Probab=99.36 E-value=2.9e-11 Score=107.13 Aligned_cols=134 Identities=18% Similarity=0.260 Sum_probs=84.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc------cccc------------------CCCCCeEEecc-cc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLA-KQ 61 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~------~~~~------------------~~~~~~~~~~~-~~ 61 (255)
.+||+||||||+|+++|..|++.|.+|+|+|+.+.+.. .+.. ..+........ ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 48999999999999999999999999999999764421 1100 00111111000 00
Q ss_pred cccCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeE
Q 025254 62 FCQLPHLP-------FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (255)
Q Consensus 62 ~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (255)
+....... .+.......++..+.+.|.+.+.+.++.+ +++++|+++...+ +.+++++....++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~~~----~~ 154 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRV--EFGCELVGFEQDA--DGVTARVAGPAGE----ET 154 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEEcC--CcEEEEEEeCCCe----EE
Confidence 00000000 00001112446677778888888777655 9999999998776 5666666432222 67
Q ss_pred EEeeCEEEEeecCCC
Q 025254 135 YYSGRFLVVASGETT 149 (255)
Q Consensus 135 ~i~~d~vViAtG~~s 149 (255)
+++|+||.|+|.+|
T Consensus 155 -i~a~~vVgADG~~S 168 (502)
T PRK06184 155 -VRARYLVGADGGRS 168 (502)
T ss_pred -EEeCEEEECCCCch
Confidence 99999999999876
No 103
>PRK06126 hypothetical protein; Provisional
Probab=99.35 E-value=4.3e-11 Score=107.10 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=85.7
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc--------------CCCC--------------CeEE
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYD--------------RLRL 56 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~--------------~~~~--------------~~~~ 56 (255)
...+||+|||||++|+++|..|++.|++|+|+|+.+.....-+. ...+ ....
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 45689999999999999999999999999999998632210000 0000 0000
Q ss_pred e--cccccccCCCCCC--------------CC-CCCCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcE
Q 025254 57 H--LAKQFCQLPHLPF--------------PS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMW 118 (255)
Q Consensus 57 ~--~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~ 118 (255)
. ....+..+..... .. ......++..+.+.|.+.+.+. ++.+ +++++|+++...+ +.+
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v 160 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTL--RYGHRLTDFEQDA--DGV 160 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceE--EeccEEEEEEECC--CeE
Confidence 0 0000111100000 00 0012245667777888877654 5555 9999999998876 556
Q ss_pred EEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 119 NVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 119 ~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
++.+.+..++ +..+ +++|+||.|+|.+|.
T Consensus 161 ~v~~~~~~~g--~~~~-i~ad~vVgADG~~S~ 189 (545)
T PRK06126 161 TATVEDLDGG--ESLT-IRADYLVGCDGARSA 189 (545)
T ss_pred EEEEEECCCC--cEEE-EEEEEEEecCCcchH
Confidence 6666553332 3357 899999999998763
No 104
>PRK07190 hypothetical protein; Provisional
Probab=99.34 E-value=3.5e-11 Score=105.80 Aligned_cols=135 Identities=17% Similarity=0.213 Sum_probs=85.2
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc--------------CCCC----------CeEE
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYD----------RLRL 56 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~--------------~~~~----------~~~~ 56 (255)
|.+ ..+||+||||||+|+++|..|++.|.+|+|+|+.+.....-+. ..++ ....
T Consensus 1 m~~--~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~ 78 (487)
T PRK07190 1 MST--QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSV 78 (487)
T ss_pred CCC--ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEE
Confidence 653 3589999999999999999999999999999998743211000 0000 0000
Q ss_pred ecccccccCCCC---CCCCC-C--CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCc
Q 025254 57 HLAKQFCQLPHL---PFPSS-Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (255)
Q Consensus 57 ~~~~~~~~~~~~---~~~~~-~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 130 (255)
-....+...... ..... . ....++..+.+.|.+.+.+.++.+ +++++|+++...+ +.+.+.+.++
T Consensus 79 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v--~~~~~v~~l~~~~--~~v~v~~~~g----- 149 (487)
T PRK07190 79 WANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAV--KRNTSVVNIELNQ--AGCLTTLSNG----- 149 (487)
T ss_pred ecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEEcC--CeeEEEECCC-----
Confidence 000001000000 00000 0 112345667778888888878766 9999999998876 5566665442
Q ss_pred eeeEEEeeCEEEEeecCCC
Q 025254 131 EIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 131 ~~~~~i~~d~vViAtG~~s 149 (255)
.+ +++++||.|+|..|
T Consensus 150 --~~-v~a~~vVgADG~~S 165 (487)
T PRK07190 150 --ER-IQSRYVIGADGSRS 165 (487)
T ss_pred --cE-EEeCEEEECCCCCH
Confidence 57 99999999999766
No 105
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.34 E-value=2e-11 Score=104.63 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=86.9
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEecc-CCCCccccc-------------------------CCCCCeEEeccc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASIWKK-------------------------YSYDRLRLHLAK 60 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~-~~~g~~~~~-------------------------~~~~~~~~~~~~ 60 (255)
.+||+|||||++|+++|..|++.|++|+|||+. ...-..-+. ..+..+......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 479999999999999999999999999999998 211100000 011111111111
Q ss_pred -ccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhcC-CCCeeEeccEEEEEEEcCCCCcEEEEEc-ccCCCCceeeEEE
Q 025254 61 -QFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYY 136 (255)
Q Consensus 61 -~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~i 136 (255)
....+....... ......++.++.+.|.+.+.+.+ +.+ +++++|+.++..+ +...+++. ++ .+ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~--~~~~~v~~~~~~~--~~v~v~l~~dG-------~~-~ 149 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTL--RFGAEVEAVEQDG--DGVTVTLSFDG-------ET-L 149 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEE--EcCceEEEEEEcC--CceEEEEcCCC-------cE-E
Confidence 111122211111 11123567888898888888765 555 9999999999987 66667776 43 58 9
Q ss_pred eeCEEEEeecCCC
Q 025254 137 SGRFLVVASGETT 149 (255)
Q Consensus 137 ~~d~vViAtG~~s 149 (255)
+||+||.|+|.+|
T Consensus 150 ~a~llVgADG~~S 162 (387)
T COG0654 150 DADLLVGADGANS 162 (387)
T ss_pred ecCEEEECCCCch
Confidence 9999999999876
No 106
>PRK08013 oxidoreductase; Provisional
Probab=99.34 E-value=2.2e-11 Score=104.83 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=83.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc---c---------ccc--------CCCCCe-----------E
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS---I---------WKK--------YSYDRL-----------R 55 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~---~---------~~~--------~~~~~~-----------~ 55 (255)
.+||+||||||+|+++|..|++.|++|+|+|+.+.... . +.. ..++.+ .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 48999999999999999999999999999999875221 0 000 001111 0
Q ss_pred Eeccccc--ccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCC
Q 025254 56 LHLAKQF--CQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG 129 (255)
Q Consensus 56 ~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~ 129 (255)
....... ..+..... ..+ ....+..+.+.|.+.+... ++.+ +++++|+++...+ +.+.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g---- 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSM--GYSHLGHIIENSVIHYALWQKAQQSSDITL--LAPAELQQVAWGE--NEAFLTLKDG---- 152 (400)
T ss_pred EEeCCCCceEEEccccc--CCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeEEEEEcCC----
Confidence 0000000 00000000 111 1245677778888777765 4554 9999999998766 5666776553
Q ss_pred ceeeEEEeeCEEEEeecCCCC
Q 025254 130 REIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 130 ~~~~~~i~~d~vViAtG~~s~ 150 (255)
.+ +++|+||.|+|.+|.
T Consensus 153 ---~~-i~a~lvVgADG~~S~ 169 (400)
T PRK08013 153 ---SM-LTARLVVGADGANSW 169 (400)
T ss_pred ---CE-EEeeEEEEeCCCCcH
Confidence 67 999999999998763
No 107
>PLN02463 lycopene beta cyclase
Probab=99.33 E-value=2.4e-11 Score=105.32 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC-----cccccCCCCCeEE------ecccccccCCCC--CCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-----SIWKKYSYDRLRL------HLAKQFCQLPHL--PFPSS 73 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g-----~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~ 73 (255)
.+||+||||||+|+++|..|++.|.+|+|+|+.+... +.|... +..+-. .-+.....+... .....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 5799999999999999999999999999999976321 222210 000000 000000000000 00001
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
....+++.++.+.+.+.+...++.. ...+|+++...+ +.+.|++.++ .+ +++|.||.|+|..+.
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~---~~~~V~~I~~~~--~~~~V~~~dG-------~~-i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQF---HQAKVKKVVHEE--SKSLVVCDDG-------VK-IQASLVLDATGFSRC 170 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEE---EeeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECcCCCcC
Confidence 1123567888888888888777653 357899998766 6677877664 67 999999999998654
No 108
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.33 E-value=6.2e-11 Score=106.06 Aligned_cols=137 Identities=20% Similarity=0.301 Sum_probs=85.3
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc------ccc--------CCCCCe-----------EEecc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK--------YSYDRL-----------RLHLA 59 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~------~~~--------~~~~~~-----------~~~~~ 59 (255)
...+||+||||||+|+++|..|++.|.+|+|||+.+..... +.. ...+.+ .....
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 45689999999999999999999999999999998754221 100 000000 00000
Q ss_pred cccccCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEE
Q 025254 60 KQFCQLPHLPFP-SSYPMF--VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (255)
Q Consensus 60 ~~~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (255)
.....+...+.. ...+.+ .++..+.++|.+.+.+. ++. ++++++|+++...+ +.+.+.+.+... +.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~- 171 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD--DGVTLTVETPDG----PYT- 171 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC--CEEEEEEECCCC----cEE-
Confidence 111111111100 011111 45667778888877765 444 49999999998876 566666543221 157
Q ss_pred EeeCEEEEeecCCCC
Q 025254 136 YSGRFLVVASGETTN 150 (255)
Q Consensus 136 i~~d~vViAtG~~s~ 150 (255)
+++|+||.|+|.+|.
T Consensus 172 i~ad~vVgADG~~S~ 186 (547)
T PRK08132 172 LEADWVIACDGARSP 186 (547)
T ss_pred EEeCEEEECCCCCcH
Confidence 899999999997663
No 109
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.33 E-value=3.6e-11 Score=103.31 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=85.9
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC----c-------ccc--------cCCCCCe-------
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S-------IWK--------KYSYDRL------- 54 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g----~-------~~~--------~~~~~~~------- 54 (255)
|.. ...+||+|||||++|+++|..|++.|.+|+|+|+.+... + .+. ...++.+
T Consensus 1 ~~~-~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 1 MSR-RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCC-CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 543 356899999999999999999999999999999976321 0 000 0001110
Q ss_pred ----EEeccc--ccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCC
Q 025254 55 ----RLHLAK--QFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127 (255)
Q Consensus 55 ----~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~ 127 (255)
...... ....+....... ......++..+.+.+.+.+.+.++.+ +++++|+++...+ +.+.|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~g-- 153 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQL--HCPARVVALEQDA--DRVRLRLDDG-- 153 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeEEEEEecC--CeEEEEECCC--
Confidence 000000 000110000000 01112446677788888788777665 8999999998766 6677776543
Q ss_pred CCceeeEEEeeCEEEEeecCCC
Q 025254 128 PGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 128 ~~~~~~~~i~~d~vViAtG~~s 149 (255)
.+ +++|.||.|+|.+|
T Consensus 154 -----~~-~~a~~vV~AdG~~S 169 (392)
T PRK08773 154 -----RR-LEAALAIAADGAAS 169 (392)
T ss_pred -----CE-EEeCEEEEecCCCc
Confidence 57 89999999999876
No 110
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.33 E-value=3e-11 Score=104.55 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=81.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC-----c---cccc--------CCCCC----------eEEecc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-----S---IWKK--------YSYDR----------LRLHLA 59 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g-----~---~~~~--------~~~~~----------~~~~~~ 59 (255)
..+||+|||||++|+++|..|++.|++|+|+|+.+... . .+.. ..++. +.....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 46899999999999999999999999999999987532 1 0000 00000 000000
Q ss_pred c--ccccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEE
Q 025254 60 K--QFCQLPHLPFPSSYPMF-VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (255)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (255)
. ....+...........+ .....+.+.|.+.+... ++.+ +++++++++...+ +.+.|++.+.. ++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~v~~~~--~~~~v~~~~~~----~~~~- 167 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITW--LCPAEVVSVEYQQ--DAATVTLEIEG----KQQT- 167 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeeEEEEccCC----cceE-
Confidence 0 00011100000000111 22345666666666654 4544 8899999998766 56777775422 2257
Q ss_pred EeeCEEEEeecCCCC
Q 025254 136 YSGRFLVVASGETTN 150 (255)
Q Consensus 136 i~~d~vViAtG~~s~ 150 (255)
+++|+||.|+|.+|.
T Consensus 168 i~adlvIgADG~~S~ 182 (415)
T PRK07364 168 LQSKLVVAADGARSP 182 (415)
T ss_pred EeeeEEEEeCCCCch
Confidence 899999999998763
No 111
>PRK10015 oxidoreductase; Provisional
Probab=99.31 E-value=6.7e-11 Score=102.57 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=83.3
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccc------ccC----CCCCeEE------eccccccc
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW------KKY----SYDRLRL------HLAKQFCQ 64 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~------~~~----~~~~~~~------~~~~~~~~ 64 (255)
|++ ..+||+||||||+|+++|+.|++.|.+|+|+|+.+.++... ... ..+.+.. ......+.
T Consensus 1 m~~--~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 78 (429)
T PRK10015 1 MSD--DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKIS 78 (429)
T ss_pred CCc--cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEE
Confidence 643 35899999999999999999999999999999987553210 000 0010000 00000000
Q ss_pred C-C-----CCCCCCC------CCCC-CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEE-EEEcccCCCCc
Q 025254 65 L-P-----HLPFPSS------YPMF-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGR 130 (255)
Q Consensus 65 ~-~-----~~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~ 130 (255)
+ . ...+... ...| ..+..+.++|.+.+.+.++.+ +.+++|+++...+ +.+. +...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~------ 148 (429)
T PRK10015 79 FLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD------ 148 (429)
T ss_pred EEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC------
Confidence 0 0 0000000 0112 356778888888888888766 8889999988754 4433 33221
Q ss_pred eeeEEEeeCEEEEeecCCC
Q 025254 131 EIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 131 ~~~~~i~~d~vViAtG~~s 149 (255)
.+ ++++.||+|+|..+
T Consensus 149 --~~-i~A~~VI~AdG~~s 164 (429)
T PRK10015 149 --DI-LEANVVILADGVNS 164 (429)
T ss_pred --eE-EECCEEEEccCcch
Confidence 67 89999999999755
No 112
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.31 E-value=3.1e-11 Score=103.56 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=82.9
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCC----eEE-----eccccc--ccCCCCCCCCCCCC-
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDR----LRL-----HLAKQF--CQLPHLPFPSSYPM- 76 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~----~~~-----~~~~~~--~~~~~~~~~~~~~~- 76 (255)
||+|||||++|+++|..|++.|.+|+|+|+.+..++......+.. +.. ...... +..+........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999999999999999887665222111110 000 000000 00010000001111
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
..++..+.+++.+.+.+.++. ...++|+.+...+ .+.+.|++.++ .+ ++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG-------QR-IQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC-------CE-EEeCEEEECCCCch
Confidence 256788888888888877764 3466888887763 25677777653 57 99999999999766
No 113
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.31 E-value=2.2e-11 Score=104.59 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc------CCCCCeE--------EecccccccCCCCCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------YSYDRLR--------LHLAKQFCQLPHLPFPS 72 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~------~~~~~~~--------~~~~~~~~~~~~~~~~~ 72 (255)
.+||+||||||+|++||+.|++.|.+|+++|+...+|..-.. .....+. .........++......
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 589999999999999999999999999999998866641111 0000000 00111111111111000
Q ss_pred CC----CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 73 SY----PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 73 ~~----~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
.. ....++..+.++|...+++.|..+ +.+++++.+..++ +...+....+. .+ +++++||.|+|..
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~------~e-~~a~~vI~AdG~~ 151 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD------DE-VRAKVVIDADGVN 151 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC------EE-EEcCEEEECCCcc
Confidence 11 112457888999999999999887 9999999999887 45444443321 57 9999999999975
Q ss_pred C
Q 025254 149 T 149 (255)
Q Consensus 149 s 149 (255)
+
T Consensus 152 s 152 (396)
T COG0644 152 S 152 (396)
T ss_pred h
Confidence 4
No 114
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.3e-11 Score=92.56 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=89.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCC-CCCeEEecccc-cccCCCCCCCCCCCCC--CCHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYS-YDRLRLHLAKQ-FCQLPHLPFPSSYPMF--VSRA 81 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 81 (255)
..||+||||||+||+||++|++.|.+|+|+|+.-.+|| .|--.+ ++.+....+.. +..--..++.+.-..+ .+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 46999999999999999999999999999999887765 887643 34444433322 1111111222211111 3456
Q ss_pred HHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCc------EEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM------WNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 82 ~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~------~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
++...+...+-+.+.++ +....|.++...++... |+.....+..- +... +++++||-|||+..
T Consensus 110 e~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhv--DPl~-i~a~~VvDaTGHda 178 (262)
T COG1635 110 EFASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHV--DPLT-IRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhccccc--Ccce-eeEEEEEeCCCCch
Confidence 77777777777888766 88888888887763211 22111111110 2367 99999999999853
No 115
>PRK06185 hypothetical protein; Provisional
Probab=99.29 E-value=7.4e-11 Score=101.84 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=82.1
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-----cccc---------CCCC-----------CeEEecc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-----IWKK---------YSYD-----------RLRLHLA 59 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-----~~~~---------~~~~-----------~~~~~~~ 59 (255)
...+||+|||||++|+++|..|++.|.+|+|+|+.+.... .+.. ..++ .+.....
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 3468999999999999999999999999999999763211 1100 0000 1111000
Q ss_pred cc-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcE-EEEEcccCCCCceeeE
Q 025254 60 KQ-F--CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEE 134 (255)
Q Consensus 60 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~ 134 (255)
.. . ..+...........+.+...+.+.+.+.+... ++.+ +++++|+++...+ +.. .|.+...+ .+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~~~~~~--~~v~~v~~~~~~----g~~~ 155 (407)
T PRK06185 84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTL--RMGAEVTGLIEEG--GRVTGVRARTPD----GPGE 155 (407)
T ss_pred CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEE--EeCCEEEEEEEeC--CEEEEEEEEcCC----CcEE
Confidence 10 0 01111111111112345667778887777654 5554 8899999998765 332 24443211 1157
Q ss_pred EEeeCEEEEeecCCC
Q 025254 135 YYSGRFLVVASGETT 149 (255)
Q Consensus 135 ~i~~d~vViAtG~~s 149 (255)
+++|.||.|+|.+|
T Consensus 156 -i~a~~vI~AdG~~S 169 (407)
T PRK06185 156 -IRADLVVGADGRHS 169 (407)
T ss_pred -EEeCEEEECCCCch
Confidence 89999999999876
No 116
>PRK07045 putative monooxygenase; Reviewed
Probab=99.29 E-value=1.2e-10 Score=99.90 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=82.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC---c---cccc--------CCC-----------CCeEEeccc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S---IWKK--------YSY-----------DRLRLHLAK 60 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g---~---~~~~--------~~~-----------~~~~~~~~~ 60 (255)
..+||+||||||+|+++|..|++.|++|+|+|+.+... + .+.. ... ..+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 35899999999999999999999999999999987541 1 0100 000 111110000
Q ss_pred -ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHh-cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEe
Q 025254 61 -QFCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (255)
Q Consensus 61 -~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~ 137 (255)
....+...... ..+....++.++.+.+.+.+.. .++.+ +++++|+++...++...+.|+..++ .+ +.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~~~~~~~v~~~~g-------~~-~~ 153 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRL--RFETSIERIERDADGTVTSVTLSDG-------ER-VA 153 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeE--EeCCEEEEEEECCCCcEEEEEeCCC-------CE-EE
Confidence 01111100000 0111123566777777776654 34544 9999999999876322345666543 57 89
Q ss_pred eCEEEEeecCCC
Q 025254 138 GRFLVVASGETT 149 (255)
Q Consensus 138 ~d~vViAtG~~s 149 (255)
+|.||.|+|..|
T Consensus 154 ~~~vIgADG~~S 165 (388)
T PRK07045 154 PTVLVGADGARS 165 (388)
T ss_pred CCEEEECCCCCh
Confidence 999999999876
No 117
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.29 E-value=6.6e-11 Score=101.98 Aligned_cols=131 Identities=20% Similarity=0.261 Sum_probs=84.2
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCC------c--cccc--------CCC----------CCeEEecc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA------S--IWKK--------YSY----------DRLRLHLA 59 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g------~--~~~~--------~~~----------~~~~~~~~ 59 (255)
+||+|||||++|+++|..|++.| ++|+|+|+.+... + .+.. ..+ ..+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999985 8999999976321 0 0000 000 00111000
Q ss_pred c-------ccccCCCC-CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCce
Q 025254 60 K-------QFCQLPHL-PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (255)
Q Consensus 60 ~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (255)
. ....+... .....+....++..+.+.+.+.+.+.++.+ +++++|+++...+ +.+.|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g------ 151 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDL--REATSVTDFETRD--EGVTVTLSDG------ 151 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CEEEEEECCC------
Confidence 0 00011000 000011123567788888888888877665 8999999998766 6677776553
Q ss_pred eeEEEeeCEEEEeecCCCC
Q 025254 132 IEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 132 ~~~~i~~d~vViAtG~~s~ 150 (255)
.+ +.+|.||.|+|.+|.
T Consensus 152 -~~-~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 152 -SV-LEARLLVAADGARSK 168 (403)
T ss_pred -CE-EEeCEEEEcCCCChH
Confidence 67 899999999997653
No 118
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.29 E-value=7.1e-11 Score=101.30 Aligned_cols=133 Identities=19% Similarity=0.299 Sum_probs=83.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc------------------ccccC-----CCCCeEEecccc-
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------------------IWKKY-----SYDRLRLHLAKQ- 61 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~------------------~~~~~-----~~~~~~~~~~~~- 61 (255)
..+||+|||||++|+++|..|++.|.+|+|||+.+.... .|..- .+..+.......
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 358999999999999999999999999999999864321 11100 000111100000
Q ss_pred cc-----cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEE
Q 025254 62 FC-----QLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (255)
Q Consensus 62 ~~-----~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (255)
.. .+........ .....++..+.+.+.+.+.+.+... +++++|+++...+ +.+.|++.++ .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 153 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG-------TT- 153 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC-------CE-
Confidence 00 0000000000 0112456677777777777665333 7899999998766 6777877653 67
Q ss_pred EeeCEEEEeecCCCC
Q 025254 136 YSGRFLVVASGETTN 150 (255)
Q Consensus 136 i~~d~vViAtG~~s~ 150 (255)
+++|.||.|+|.+|.
T Consensus 154 ~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 154 LSARLVVGADGRNSP 168 (388)
T ss_pred EEEeEEEEecCCCch
Confidence 899999999998763
No 119
>PRK06753 hypothetical protein; Provisional
Probab=99.28 E-value=9.1e-11 Score=100.11 Aligned_cols=127 Identities=18% Similarity=0.235 Sum_probs=79.7
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc------ccc--------C----------CCCCeEEecccccc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK--------Y----------SYDRLRLHLAKQFC 63 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~------~~~--------~----------~~~~~~~~~~~~~~ 63 (255)
.||+|||||++|+++|..|++.|++|+|+|+.+.+... +.. . ....+.......-
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 48999999999999999999999999999998754311 000 0 0011111100000
Q ss_pred cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEE
Q 025254 64 QLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (255)
Q Consensus 64 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vV 142 (255)
.+....+... .....++..+.+.|.+.+.. . .++++++|++++..+ +.+.|++.++ .+ +++|.||
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~~~vi 145 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENET--DKVTIHFADG-------ES-EAFDLCI 145 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecC--CcEEEEECCC-------CE-EecCEEE
Confidence 0000011000 11124566777777665442 2 359999999998765 6777877654 67 8999999
Q ss_pred EeecCCC
Q 025254 143 VASGETT 149 (255)
Q Consensus 143 iAtG~~s 149 (255)
.|+|.+|
T Consensus 146 gadG~~S 152 (373)
T PRK06753 146 GADGIHS 152 (373)
T ss_pred ECCCcch
Confidence 9999766
No 120
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.27 E-value=4.6e-11 Score=102.72 Aligned_cols=132 Identities=23% Similarity=0.251 Sum_probs=82.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc------ccc--------CCC----------CCeEEec---c
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK--------YSY----------DRLRLHL---A 59 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~------~~~--------~~~----------~~~~~~~---~ 59 (255)
+.||+|||||++|+++|..|++.|++|+|+|+.+.++.. +.. ... ..+.... .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 589999999999999999999999999999998754310 000 000 0010000 0
Q ss_pred cccccCCCCC-CCC--CCC-CCCCHHHHHHHHHHHHHhcC-CCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeE
Q 025254 60 KQFCQLPHLP-FPS--SYP-MFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (255)
Q Consensus 60 ~~~~~~~~~~-~~~--~~~-~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (255)
..+..++... +.. ..+ ....+.++.+.|.+.+.+.+ +.+ +++++|+++...+ +.+.+.+.++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~--~~~~~v~~i~~~~--~~v~v~~~~g-------~~ 152 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEF--RTSTHVVGIEQDG--DGVTVFDQQG-------NR 152 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEE--EeCCEEEEEecCC--CceEEEEcCC-------CE
Confidence 0000100000 000 001 12456677777777776554 444 8899999998765 5677776553 67
Q ss_pred EEeeCEEEEeecCCCC
Q 025254 135 YYSGRFLVVASGETTN 150 (255)
Q Consensus 135 ~i~~d~vViAtG~~s~ 150 (255)
+.+|.||.|+|.+|.
T Consensus 153 -~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 153 -WTGDALIGCDGVKSV 167 (396)
T ss_pred -EecCEEEECCCcChH
Confidence 899999999998764
No 121
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.27 E-value=5.4e-11 Score=102.64 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=81.0
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc------ccc-------c---------CCCCCe-----------
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWK-------K---------YSYDRL----------- 54 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~------~~~-------~---------~~~~~~----------- 54 (255)
+||+|||||++|+++|..|++.|++|+|+|+.+.... .+. . ..++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 7999999999999999999999999999999762100 000 0 001111
Q ss_pred EEecccc--cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCce
Q 025254 55 RLHLAKQ--FCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (255)
Q Consensus 55 ~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (255)
....... ...+...... .......+...+.+.+.+.+.+.++.+ +.++++++++..+ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g------ 152 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGL--LANARLEQMRRSG--DDWLLTLADG------ 152 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEE--EcCCEEEEEEEcC--CeEEEEECCC------
Confidence 0000000 0000000000 000112345566666666666666554 8899999998776 6677777653
Q ss_pred eeEEEeeCEEEEeecCCCC
Q 025254 132 IEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 132 ~~~~i~~d~vViAtG~~s~ 150 (255)
.+ +++|+||.|+|.+|.
T Consensus 153 -~~-~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 153 -RQ-LRAPLVVAADGANSA 169 (405)
T ss_pred -CE-EEeCEEEEecCCCch
Confidence 67 899999999998774
No 122
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.27 E-value=4.4e-11 Score=109.08 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=105.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
+.++|+|||+||+||++|-+|.+.|+.|+++||...+||...+. .+ .+..-+.+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------ip---------nmkldk~vv~ 1839 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------IP---------NMKLDKFVVQ 1839 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------CC---------ccchhHHHHH
Confidence 46899999999999999999999999999999999999875543 11 1111124556
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
...+...+.|+.+ ..|+++-+- +.... -. -+.|.||+|+|+ ..|.-.++||.+.. .
T Consensus 1840 rrv~ll~~egi~f--~tn~eigk~----------vs~d~--------l~-~~~daiv~a~gs-t~prdlpv~grd~k--g 1895 (2142)
T KOG0399|consen 1840 RRVDLLEQEGIRF--VTNTEIGKH----------VSLDE--------LK-KENDAIVLATGS-TTPRDLPVPGRDLK--G 1895 (2142)
T ss_pred HHHHHHHhhCceE--Eeecccccc----------ccHHH--------Hh-hccCeEEEEeCC-CCCcCCCCCCcccc--c
Confidence 6667777778776 777655221 22221 22 356999999997 45666667775431 0
Q ss_pred CCCCCcEEecc-------cC-CCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcCe
Q 025254 166 ATGTGEVIHST-------QY-KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (255)
Q Consensus 166 ~~~~~~~~~~~-------~~-~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~ 211 (255)
.-+.-..+|.. .. .......+++|+|||||.+|.|....-.++|.+
T Consensus 1896 v~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1896 VHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred cHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 00000011110 00 111334689999999999999999999899865
No 123
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.26 E-value=7.3e-11 Score=101.35 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=82.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC----cccc----------------cCCCCCe-----------
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SIWK----------------KYSYDRL----------- 54 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g----~~~~----------------~~~~~~~----------- 54 (255)
..+||+|||||++|+++|..|++.|++|+|+|+.+... ..+. ...++.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 35899999999999999999999999999999975211 0000 0001100
Q ss_pred EE-ecccccccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCce
Q 025254 55 RL-HLAKQFCQLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (255)
Q Consensus 55 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (255)
.. ........+......... ....++..+.+.+.+.+... ++.+ +++++|+++...+ +.+.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g------ 153 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTL--RCPASLQALQRDD--DGWELTLADG------ 153 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEE--EcCCeeEEEEEcC--CeEEEEECCC------
Confidence 00 000000000000000000 01245667777777776665 6554 8899999998766 5677777553
Q ss_pred eeEEEeeCEEEEeecCCCC
Q 025254 132 IEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 132 ~~~~i~~d~vViAtG~~s~ 150 (255)
.+ +++|.||.|+|.+|.
T Consensus 154 -~~-~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 154 -EE-IQAKLVIGADGANSQ 170 (391)
T ss_pred -CE-EEeCEEEEeCCCCch
Confidence 57 899999999998763
No 124
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.26 E-value=1.1e-10 Score=99.65 Aligned_cols=129 Identities=16% Similarity=0.257 Sum_probs=82.2
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC-------Cc----------------cccc-----CCCCCeEEecc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------AS----------------IWKK-----YSYDRLRLHLA 59 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~-------g~----------------~~~~-----~~~~~~~~~~~ 59 (255)
+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|.. .....+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999986311 11 1110 00111111101
Q ss_pred c--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-CCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEE
Q 025254 60 K--QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (255)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i 136 (255)
. ....+... ........+.+.++...|.+.+...+ +. ++++++++++...+ +.+.|.+.+ .+ +
T Consensus 82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~--~~v~v~~~~--------~~-~ 147 (374)
T PRK06617 82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHN--DYSIIKFDD--------KQ-I 147 (374)
T ss_pred CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcC--CeEEEEEcC--------CE-E
Confidence 0 01111110 00001112457788888888877765 44 38899999998766 567777743 46 8
Q ss_pred eeCEEEEeecCCCC
Q 025254 137 SGRFLVVASGETTN 150 (255)
Q Consensus 137 ~~d~vViAtG~~s~ 150 (255)
++|.||.|+|..|.
T Consensus 148 ~adlvIgADG~~S~ 161 (374)
T PRK06617 148 KCNLLIICDGANSK 161 (374)
T ss_pred eeCEEEEeCCCCch
Confidence 99999999998764
No 125
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.24 E-value=1.5e-10 Score=98.72 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=82.5
Q ss_pred eEEEECCCHHHHHHHHHH--hhCCCCeEEEeccCCC--Cc--ccccCCCC-----CeEEec-ccccccCCCCCCCCCCCC
Q 025254 9 EVIMVGAGTSGLATAACL--SLQSIPYVILERENCY--AS--IWKKYSYD-----RLRLHL-AKQFCQLPHLPFPSSYPM 76 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l--~~~g~~v~lie~~~~~--g~--~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~ 76 (255)
||+|||||++|+++|..| ++.|.+|+|||+.+.. +. .|..-... .+.... ......++..........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 7789999999998766 22 33221000 000000 000000111110001111
Q ss_pred --CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 77 --FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 77 --~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
.++...+.+++.+.+...+ .. +++++|+++...+ +.+.|.+.++ .+ ++++.||.|+|..+
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VI--RLNARVTSIEETG--DGVLVVLADG-------RT-IRARVVVDARGPSS 142 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eE--EEccEEEEEEecC--ceEEEEECCC-------CE-EEeeEEEECCCccc
Confidence 3678888888888888444 33 8889999999887 5666777665 67 99999999999543
No 126
>PRK07588 hypothetical protein; Provisional
Probab=99.24 E-value=1.4e-10 Score=99.67 Aligned_cols=130 Identities=14% Similarity=0.140 Sum_probs=80.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc---c---ccc--------CC----------CCCeEEeccc--c
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS---I---WKK--------YS----------YDRLRLHLAK--Q 61 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~---~---~~~--------~~----------~~~~~~~~~~--~ 61 (255)
.||+|||||++|+++|..|++.|++|+|+|+.+.... . |.. .. ...+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 4899999999999999999999999999999874421 1 110 00 0111111000 0
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEee
Q 025254 62 FCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (255)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~ 138 (255)
...+....+..... ...++..+.+.+.+.+.. ++. ++++++|+++...+ +.+.|++.++ .+ +++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~ 147 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHR--DGVRVTFERG-------TP-RDF 147 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECC--CeEEEEECCC-------CE-EEe
Confidence 11111111111111 123456666666554432 444 49999999998766 6777877664 66 899
Q ss_pred CEEEEeecCCCC
Q 025254 139 RFLVVASGETTN 150 (255)
Q Consensus 139 d~vViAtG~~s~ 150 (255)
|.||.|+|.+|.
T Consensus 148 d~vIgADG~~S~ 159 (391)
T PRK07588 148 DLVIGADGLHSH 159 (391)
T ss_pred CEEEECCCCCcc
Confidence 999999998764
No 127
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.24 E-value=3.7e-10 Score=102.27 Aligned_cols=145 Identities=21% Similarity=0.238 Sum_probs=85.8
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhC-CCCeEEEeccCCCCc------cccc--------C--------CC--CCeEEecc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS------IWKK--------Y--------SY--DRLRLHLA 59 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~-g~~v~lie~~~~~g~------~~~~--------~--------~~--~~~~~~~~ 59 (255)
...+||+||||||+||++|..|++. |.+|+|||+.+.... .+.. . .+ ..+..-..
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 3468999999999999999999995 999999999763211 1100 0 00 00100000
Q ss_pred c-----ccc---cCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCC-CCcEEEEEcccCC-
Q 025254 60 K-----QFC---QLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLS- 127 (255)
Q Consensus 60 ~-----~~~---~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~- 127 (255)
. .+. .+...... ..++ ...++..+.+.|.+.+.+.+..+.+++++++++++..+. ...++|++.+...
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 0 000 00000000 0011 124466777888888877665444588999999987642 1346677654311
Q ss_pred CCceeeEEEeeCEEEEeecCCCC
Q 025254 128 PGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 128 ~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
..+++.+ +++|+||.|+|..|.
T Consensus 190 ~~g~~~t-v~A~~lVGaDGa~S~ 211 (634)
T PRK08294 190 HEGEEET-VRAKYVVGCDGARSR 211 (634)
T ss_pred CCCceEE-EEeCEEEECCCCchH
Confidence 0013368 999999999998763
No 128
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.24 E-value=1.4e-10 Score=99.21 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=82.2
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc--------cccc-----------CCCCCeE-----------Eec
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK-----------YSYDRLR-----------LHL 58 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~--------~~~~-----------~~~~~~~-----------~~~ 58 (255)
||+|||||++|+++|..|++.|.+|+|+|+.+..+. .... ..++.+. ...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999975321 0000 0011110 000
Q ss_pred ccc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhcC-CCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeE
Q 025254 59 AKQ--FCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (255)
Q Consensus 59 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (255)
... ...+....... .....+++..+.+.|.+.+.+.+ +.+ +++++|+++...+ +.+.+.+.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~ 149 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTL--LCPARVVELPRHS--DHVELTLDDG-------QQ 149 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--ecCCeEEEEEecC--CeeEEEECCC-------CE
Confidence 000 00000000000 00112456677788888777765 554 9999999998766 6677776653 67
Q ss_pred EEeeCEEEEeecCCCC
Q 025254 135 YYSGRFLVVASGETTN 150 (255)
Q Consensus 135 ~i~~d~vViAtG~~s~ 150 (255)
+.+|.||.|+|.+|.
T Consensus 150 -~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 150 -LRARLLVGADGANSK 164 (385)
T ss_pred -EEeeEEEEeCCCCCH
Confidence 899999999998763
No 129
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.23 E-value=6.4e-11 Score=92.91 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=84.6
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCC-----------------
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF----------------- 70 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 70 (255)
.+|+|||+|++|++||..|+..|++|+++||..-+||....+..+....+....++.-.+..|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 379999999999999999999999999999999898865555444444443333332211110
Q ss_pred -----------C-CCCCC-CC---CHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeE
Q 025254 71 -----------P-SSYPM-FV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (255)
Q Consensus 71 -----------~-~~~~~-~~---~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (255)
+ ..... |. ....+.+++. . ++++ .++++|+.+...+ +.|++...++. ..
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA---t--dL~V--~~~~rVt~v~~~~--~~W~l~~~~g~------~~ 146 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA---T--DLTV--VLETRVTEVARTD--NDWTLHTDDGT------RH 146 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHHh---c--cchh--hhhhhhhhheecC--CeeEEEecCCC------cc
Confidence 0 00011 22 2233333222 2 4445 9999999999986 89999997653 45
Q ss_pred EEeeCEEEEeecCCC
Q 025254 135 YYSGRFLVVASGETT 149 (255)
Q Consensus 135 ~i~~d~vViAtG~~s 149 (255)
..+|.||+|.-.-.
T Consensus 147 -~~~d~vvla~PAPQ 160 (331)
T COG3380 147 -TQFDDVVLAIPAPQ 160 (331)
T ss_pred -cccceEEEecCCCc
Confidence 78999999988643
No 130
>PRK11445 putative oxidoreductase; Provisional
Probab=99.23 E-value=2.9e-10 Score=96.20 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=80.0
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC---------c-cccc--------CCC-CCeEEecccccccCCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---------S-IWKK--------YSY-DRLRLHLAKQFCQLPHL 68 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g---------~-~~~~--------~~~-~~~~~~~~~~~~~~~~~ 68 (255)
+||+||||||+|+++|..|++. .+|+++|+.+..+ + .+.. ... +......+ ..+.....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~~~~~~ 79 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIFAVKTI 79 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-ccceeeEe
Confidence 7999999999999999999999 9999999987431 1 0000 000 00000000 00000000
Q ss_pred CCCC------CCCC-CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEE
Q 025254 69 PFPS------SYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (255)
Q Consensus 69 ~~~~------~~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~v 141 (255)
.... ..+. ..++.++.+.+.+. ...++.+ +++++++++...+ +.+.|.+.... +..+ +++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~a~~v 149 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEV--YHNSLCRKIWRED--DGYHVIFRADG----WEQH-ITARYL 149 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEE--EcCCEEEEEEEcC--CEEEEEEecCC----cEEE-EEeCEE
Confidence 1110 0011 25677887777774 3445554 9999999998766 66777753211 2247 899999
Q ss_pred EEeecCCCC
Q 025254 142 VVASGETTN 150 (255)
Q Consensus 142 ViAtG~~s~ 150 (255)
|.|+|..|.
T Consensus 150 V~AdG~~S~ 158 (351)
T PRK11445 150 VGADGANSM 158 (351)
T ss_pred EECCCCCcH
Confidence 999998764
No 131
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.23 E-value=2e-10 Score=99.92 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=81.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC----CcccccCCC--------------CCeEEeccccc-ccCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----ASIWKKYSY--------------DRLRLHLAKQF-CQLPH 67 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~----g~~~~~~~~--------------~~~~~~~~~~~-~~~~~ 67 (255)
.+||+||||||+|+++|..|++.|++|+|+|+.... |+....... ..+.+..+... ..+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 589999999999999999999999999999997532 110000000 01111111100 00000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCC-CCcEEEEEcccC--CCCceeeEEEeeCEEEEe
Q 025254 68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLL--SPGREIEEYYSGRFLVVA 144 (255)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~--~~~~~~~~~i~~d~vViA 144 (255)
......+-...++..+.++|.+.+.+.|+++ +.+ .++++..... .+.+.|.+.+.. ..+++..+ +++|.||.|
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~-v~a~~VIgA 194 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATL--ING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT-LEVDAVIGA 194 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Eec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE-EEeCEEEEc
Confidence 0000001112678899999999999888764 544 6777764321 245566654320 00002267 999999999
Q ss_pred ecCCC
Q 025254 145 SGETT 149 (255)
Q Consensus 145 tG~~s 149 (255)
+|..|
T Consensus 195 DG~~S 199 (450)
T PLN00093 195 DGANS 199 (450)
T ss_pred CCcch
Confidence 99766
No 132
>PRK07236 hypothetical protein; Provisional
Probab=99.23 E-value=2.1e-10 Score=98.34 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=78.3
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC----Cc-c--ccc--------CCCCCeEEecc---ccc
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS-I--WKK--------YSYDRLRLHLA---KQF 62 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~----g~-~--~~~--------~~~~~~~~~~~---~~~ 62 (255)
|..|. .++|+|||||++|+++|..|++.|++|+|+|+.+.. |+ . +.. ...+....... ..+
T Consensus 1 ~~~~~-~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 79 (386)
T PRK07236 1 MTHMS-GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIY 79 (386)
T ss_pred CCCCC-CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEE
Confidence 55553 589999999999999999999999999999997632 11 0 000 00000000000 000
Q ss_pred ccCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCE
Q 025254 63 CQLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF 140 (255)
Q Consensus 63 ~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~ 140 (255)
......... ...+ .......+.+.+.+ ... ...++++++|+++...+ +.++|++.++ .+ +++|.
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~ 145 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG-------RR-ETADL 145 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCE
Confidence 000000000 0000 11233344444433 222 23459999999998765 6677877664 67 89999
Q ss_pred EEEeecCCCC
Q 025254 141 LVVASGETTN 150 (255)
Q Consensus 141 vViAtG~~s~ 150 (255)
||.|+|..|.
T Consensus 146 vIgADG~~S~ 155 (386)
T PRK07236 146 LVGADGGRST 155 (386)
T ss_pred EEECCCCCch
Confidence 9999998774
No 133
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.22 E-value=1.8e-10 Score=98.81 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=82.1
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc---ccccC----------------CCCCe-----------EE
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS---IWKKY----------------SYDRL-----------RL 56 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~---~~~~~----------------~~~~~-----------~~ 56 (255)
.+||+|||||++|+++|..|++.|.+|+|+|+.+.... .|... ..+.+ ..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999999875421 11110 00000 00
Q ss_pred ecccccccCCCCCCCCCCCC---CCCHHHHHHHHHHHHHhcC-CCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCcee
Q 025254 57 HLAKQFCQLPHLPFPSSYPM---FVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (255)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (255)
.. .....+....+....+. ..++..+.+.+.+.+.+.+ +.+ + +++|+++...+ +.+.|++.++
T Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~--~-~~~v~~i~~~~--~~~~v~~~~g------- 151 (388)
T PRK07608 85 FG-DAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW--F-PARAQGLEVDP--DAATLTLADG------- 151 (388)
T ss_pred EE-CCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEE--E-cceeEEEEecC--CeEEEEECCC-------
Confidence 00 00000000000001111 1346678888888777765 543 5 88999988765 6677777653
Q ss_pred eEEEeeCEEEEeecCCCC
Q 025254 133 EEYYSGRFLVVASGETTN 150 (255)
Q Consensus 133 ~~~i~~d~vViAtG~~s~ 150 (255)
.+ +++|+||.|+|.+|.
T Consensus 152 ~~-~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 QV-LRADLVVGADGAHSW 168 (388)
T ss_pred CE-EEeeEEEEeCCCCch
Confidence 57 899999999998763
No 134
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.22 E-value=1.4e-10 Score=99.20 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=81.2
Q ss_pred eEEEECCCHHHHHHHHHHhhCC-CCeEEEeccCCCCc----------cccc--------CCCCCe----------EEecc
Q 025254 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSYDRL----------RLHLA 59 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g-~~v~lie~~~~~g~----------~~~~--------~~~~~~----------~~~~~ 59 (255)
||+|||||++|+++|..|++.| ++|+|+|+.+...- .+.. ..++.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999764311 0000 000000 00000
Q ss_pred c--ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEE
Q 025254 60 K--QFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (255)
Q Consensus 60 ~--~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (255)
. ....+....+..... ...++.++.+.|.+.+... ++.+ +++++|+++...+ +.+++.+.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 148 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQL--YCPARYKEIIRNQ--DYVRVTLDNG-------QQ- 148 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-
Confidence 0 000000000000000 1145677888888877763 6665 8899999998766 6677777553 57
Q ss_pred EeeCEEEEeecCCC
Q 025254 136 YSGRFLVVASGETT 149 (255)
Q Consensus 136 i~~d~vViAtG~~s 149 (255)
+++|.||.|+|.+|
T Consensus 149 ~~ad~vV~AdG~~S 162 (382)
T TIGR01984 149 LRAKLLIAADGANS 162 (382)
T ss_pred EEeeEEEEecCCCh
Confidence 89999999999876
No 135
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.21 E-value=4.4e-10 Score=96.59 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=79.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC---C----ccccc---------C----------CCCCeEEeccc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---A----SIWKK---------Y----------SYDRLRLHLAK 60 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~---g----~~~~~---------~----------~~~~~~~~~~~ 60 (255)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. + +.... . ....+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 479999999999999999999999999999998741 1 00000 0 00111111111
Q ss_pred ccccCCCCCCCCCC--C--CCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEE
Q 025254 61 QFCQLPHLPFPSSY--P--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (255)
Q Consensus 61 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i 136 (255)
....+ ++.... . ...++.++.+.+.+.+...++.+ +++++++++...+ .+...|++... + ++.+ +
T Consensus 82 ~~~~~---~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v--~~~~~v~~i~~~~-~~~~~V~~~~~--G--~~~~-i 150 (392)
T PRK08243 82 RRHRI---DLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPI--RFEASDVALHDFD-SDRPYVTYEKD--G--EEHR-L 150 (392)
T ss_pred EEEEe---ccccccCCceEEEeCcHHHHHHHHHHHHhCCCeE--EEeeeEEEEEecC-CCceEEEEEcC--C--eEEE-E
Confidence 11111 111100 0 01234455666666666667665 9999999987622 24455665321 1 3367 8
Q ss_pred eeCEEEEeecCCCC
Q 025254 137 SGRFLVVASGETTN 150 (255)
Q Consensus 137 ~~d~vViAtG~~s~ 150 (255)
++|+||.|+|..|.
T Consensus 151 ~ad~vVgADG~~S~ 164 (392)
T PRK08243 151 DCDFIAGCDGFHGV 164 (392)
T ss_pred EeCEEEECCCCCCc
Confidence 99999999998774
No 136
>PRK07538 hypothetical protein; Provisional
Probab=99.21 E-value=7e-10 Score=95.96 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=82.0
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc----c--ccc--------CCC----------CCeEEecc--cc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS----I--WKK--------YSY----------DRLRLHLA--KQ 61 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~----~--~~~--------~~~----------~~~~~~~~--~~ 61 (255)
+||+|||||++|+++|..|++.|++|+|+|+.+.+.- . +.. ..+ ..+..... ..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 4899999999999999999999999999999874321 0 000 000 01111000 00
Q ss_pred cccCCCCC-CCCCCCC-CCCHHHHHHHHHHHHHh-cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEee
Q 025254 62 FCQLPHLP-FPSSYPM-FVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (255)
Q Consensus 62 ~~~~~~~~-~~~~~~~-~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~ 138 (255)
.+..+... ....++. .+++.++.+.|.+.+.+ .+. ..++++++|+++...+ +...+.+.++..+ +..+ +++
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g--~~~~-~~a 154 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA--DVTVVFLGDRAGG--DLVS-VRG 154 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC--CceEEEEeccCCC--ccce-EEe
Confidence 00000000 0001111 14677888877776654 343 2359999999998766 4444555443222 3367 999
Q ss_pred CEEEEeecCCCC
Q 025254 139 RFLVVASGETTN 150 (255)
Q Consensus 139 d~vViAtG~~s~ 150 (255)
|.||.|+|..|.
T Consensus 155 dlvIgADG~~S~ 166 (413)
T PRK07538 155 DVLIGADGIHSA 166 (413)
T ss_pred eEEEECCCCCHH
Confidence 999999998763
No 137
>PLN02697 lycopene epsilon cyclase
Probab=99.20 E-value=4.5e-10 Score=99.04 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=81.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC---cccccCCCCCeEEe-----c-ccccccCCCCCC--CCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRLH-----L-AKQFCQLPHLPF--PSSY 74 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g---~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~--~~~~ 74 (255)
..+||+||||||+|+++|..|++.|.+|+++|+..... |.|.... ..+-.. . ......++.... ....
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l-~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEF-KDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHH-HhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 35899999999999999999999999999999864433 2443210 000000 0 000000000000 0000
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEE-EEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
...+++..+.+.+.+.+...++. .++++|+++...+ +.+.+ ...++ .+ ++++.||+|+|.++
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG-------~~-i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG-------RV-IPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC-------cE-EECCEEEECCCcCh
Confidence 11266788888888888877765 4677999988765 44443 33332 67 89999999999877
No 138
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.20 E-value=2.7e-10 Score=99.20 Aligned_cols=135 Identities=16% Similarity=0.247 Sum_probs=80.7
Q ss_pred CeEEEECCCHHHHHHHHHHhh----CCCCeEEEeccC--CCC--------ccccc----------------CCCCC----
Q 025254 8 VEVIMVGAGTSGLATAACLSL----QSIPYVILEREN--CYA--------SIWKK----------------YSYDR---- 53 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~----~g~~v~lie~~~--~~g--------~~~~~----------------~~~~~---- 53 (255)
+||+|||||++|+++|..|++ .|++|+|||+.+ ... +.+.. ..++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 799999999943 211 00000 01111
Q ss_pred -------eEEecccc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCC-CCeeEeccEEEEEEEc-----CCCCcE
Q 025254 54 -------LRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI-GPSIRYQRSVESASYD-----EATNMW 118 (255)
Q Consensus 54 -------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-~~~~~~~~~v~~i~~~-----~~~~~~ 118 (255)
+....... ...+.............++..+.+.|.+.+...+- .+.++++++|++++.. +....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 11000000 01111100000011124567777888777776540 2344999999999753 222556
Q ss_pred EEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 119 NVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 119 ~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
+|++.++ .+ +++|+||.|+|..|.
T Consensus 161 ~v~~~~g-------~~-i~a~llVgADG~~S~ 184 (437)
T TIGR01989 161 HITLSDG-------QV-LYTKLLIGADGSNSN 184 (437)
T ss_pred EEEEcCC-------CE-EEeeEEEEecCCCCh
Confidence 7777654 67 999999999998764
No 139
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.20 E-value=1.8e-10 Score=97.22 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEE-EEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
.+...+.+.+.+.+++.|+.+ +.+++|+++...+ +.+. |.+.+ .. +++|+||+|+|.++.
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~--------g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD--------GE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT--------EE-EEECEEEE--GGGHH
T ss_pred ccccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc--------cc-cccceeEecccccce
Confidence 456788899999899988776 9999999999987 7777 88877 67 999999999998653
No 140
>PRK09126 hypothetical protein; Provisional
Probab=99.20 E-value=3.9e-10 Score=96.85 Aligned_cols=132 Identities=18% Similarity=0.194 Sum_probs=79.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC--------Cc---cccc--------CCCCCeE-----------E
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYDRLR-----------L 56 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~--------g~---~~~~--------~~~~~~~-----------~ 56 (255)
++||+|||||++|+++|..|++.|++|+|+|+.+.. |. .+.. ..++.+. .
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 489999999999999999999999999999998642 11 0000 1111110 0
Q ss_pred ecccc--cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHH-hcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCcee
Q 025254 57 HLAKQ--FCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVS-HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (255)
Q Consensus 57 ~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (255)
..... ...+...... .......++..+.+.+.+.+. ..++.+ +++++|++++..+ +.+.|.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i--~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIEL--LTGTRVTAVRTDD--DGAQVTLANG------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEE--EcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence 00000 0001000000 000111234455555555443 345555 9999999998765 5677776553
Q ss_pred eEEEeeCEEEEeecCCCC
Q 025254 133 EEYYSGRFLVVASGETTN 150 (255)
Q Consensus 133 ~~~i~~d~vViAtG~~s~ 150 (255)
.+ +++|+||.|+|..|.
T Consensus 152 ~~-~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 152 RR-LTARLLVAADSRFSA 168 (392)
T ss_pred CE-EEeCEEEEeCCCCch
Confidence 67 899999999997653
No 141
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.19 E-value=1.8e-10 Score=88.18 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=79.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccC-CCCCeEEecccc-cccCCCCCCCCCCCC--CCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLAKQ-FCQLPHLPFPSSYPM--FVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~ 80 (255)
..+||+||||||+|+++|+.|++.|++|+++|+...+|| .|... +++.+....+.. +..--..++.+.-.. ..+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 358999999999999999999999999999999988875 78654 455555544322 111111111111111 1456
Q ss_pred HHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcE-EEEE------cccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKA------SNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~-~v~~------~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
.++...|...+-+.|..+ +....|+++...++ ++. .|.+ ..+.+- +... ++++.||-|||+.+
T Consensus 96 ~~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHv--DPl~-i~ak~ViDaTGHda 165 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHV--DPLT-IRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T---B-EE-EEESEEEE---SSS
T ss_pred HHHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCC--Ccce-EEEeEEEeCCCCch
Confidence 677777777777788776 77888888887762 221 1111 110010 2368 99999999999743
No 142
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.19 E-value=3.3e-10 Score=97.61 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=82.4
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc------cccc--------CCCCC----------eEEeccccc-
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK--------YSYDR----------LRLHLAKQF- 62 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~------~~~~--------~~~~~----------~~~~~~~~~- 62 (255)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+.. .+.. ..++. +........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 6899999999999999999999999999999874321 0000 00000 000000000
Q ss_pred --ccCCCCCCCC-C-CCCC--CCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEE
Q 025254 63 --CQLPHLPFPS-S-YPMF--VSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (255)
Q Consensus 63 --~~~~~~~~~~-~-~~~~--~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (255)
.......... . ...+ .++..+.+.|.+.+... ++.+ +++++|+++...+ +.+++++.+..++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v--~~~~~v~~~~~~~--~~v~v~~~~~~~~----~~- 153 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEI--KLGAEMTSQRQTG--NSITATIIRTNSV----ET- 153 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEE--EECCEEEEEecCC--CceEEEEEeCCCC----cE-
Confidence 0000000000 0 0111 35677888887776653 4554 9999999998765 6667766443322 57
Q ss_pred EeeCEEEEeecCCCC
Q 025254 136 YSGRFLVVASGETTN 150 (255)
Q Consensus 136 i~~d~vViAtG~~s~ 150 (255)
+.+|.||.|+|.+|.
T Consensus 154 ~~adlvIgADG~~S~ 168 (400)
T PRK06475 154 VSAAYLIACDGVWSM 168 (400)
T ss_pred EecCEEEECCCccHh
Confidence 899999999998773
No 143
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.19 E-value=5.1e-10 Score=96.27 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=80.4
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC----cccccCCC--------------CCeEEeccccc-ccCCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SIWKKYSY--------------DRLRLHLAKQF-CQLPHL 68 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g----~~~~~~~~--------------~~~~~~~~~~~-~~~~~~ 68 (255)
+||+||||||+|+++|..|++.|++|+|+|+....+ +....... ..+....+... ..+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999975432 11100000 11111111100 000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcC-CCCcEEEEEcccCCC--CceeeEEEeeCEEEEee
Q 025254 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLLSP--GREIEEYYSGRFLVVAS 145 (255)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~-~~~~~~v~~~~~~~~--~~~~~~~i~~d~vViAt 145 (255)
.....+....++..+.++|.+.+.+.|+.+ +.+ +++++.... ..+.+.|++.....+ .+++.+ ++++.||.|+
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~-i~a~~VIgAD 156 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCT-LEVDAVIGAD 156 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCCCccE-EEeCEEEECC
Confidence 000011123678888899999999888765 555 466665322 124555654321100 002257 9999999999
Q ss_pred cCCC
Q 025254 146 GETT 149 (255)
Q Consensus 146 G~~s 149 (255)
|..|
T Consensus 157 G~~S 160 (398)
T TIGR02028 157 GANS 160 (398)
T ss_pred Ccch
Confidence 9765
No 144
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.17 E-value=4.7e-10 Score=96.83 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=78.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEecc-CCC--Cc--------ccc--------cCCCCCe-----------EE
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCY--AS--------IWK--------KYSYDRL-----------RL 56 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~-~~~--g~--------~~~--------~~~~~~~-----------~~ 56 (255)
.+||+|||||++|+++|..|++.|++|+|+|+. +.. +. .+. ...++.+ ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 579999999999999999999999999999996 211 10 000 0111111 00
Q ss_pred eccccc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCcee
Q 025254 57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (255)
Q Consensus 57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (255)
...... ..+....... ..........+.+.+.+.+... ++.+ +++++|+++...+ +.+.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v--~~~~~v~~i~~~~--~~~~v~~~~g------- 152 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTL--LMPARCQSIAVGE--SEAWLTLDNG------- 152 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEE--EcCCeeEEEEeeC--CeEEEEECCC-------
Confidence 000000 0000000000 0001123445666666666553 4444 8999999998766 5667777653
Q ss_pred eEEEeeCEEEEeecCCCC
Q 025254 133 EEYYSGRFLVVASGETTN 150 (255)
Q Consensus 133 ~~~i~~d~vViAtG~~s~ 150 (255)
.+ +++|.||.|+|..|.
T Consensus 153 ~~-~~a~lvIgADG~~S~ 169 (405)
T PRK08850 153 QA-LTAKLVVGADGANSW 169 (405)
T ss_pred CE-EEeCEEEEeCCCCCh
Confidence 67 999999999997663
No 145
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.17 E-value=4.3e-10 Score=96.69 Aligned_cols=128 Identities=20% Similarity=0.329 Sum_probs=81.8
Q ss_pred EEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEE-ec--ccc---------------cccCC------
Q 025254 11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRL-HL--AKQ---------------FCQLP------ 66 (255)
Q Consensus 11 vIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~-~~--~~~---------------~~~~~------ 66 (255)
+|||||++|+++|..|++.|.+|+|+|+.+.+|+.+.......+.. +. ... +..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999987775321110000000 00 000 00000
Q ss_pred ---CCC--CC-----CCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEE
Q 025254 67 ---HLP--FP-----SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (255)
Q Consensus 67 ---~~~--~~-----~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i 136 (255)
... +. ..++.......+.+.+.+.+++.++.+ +.+++|+++...+ +.+.+.+.. .. +
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i 147 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEI--LTNSKVKSIKKDD--NGFGVETSG--------GE-Y 147 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEecC--CeEEEEECC--------cE-E
Confidence 000 00 001111134677788888888888766 9999999997755 567776632 56 8
Q ss_pred eeCEEEEeecCCCCC
Q 025254 137 SGRFLVVASGETTNP 151 (255)
Q Consensus 137 ~~d~vViAtG~~s~~ 151 (255)
.+|.||+|+|..+.|
T Consensus 148 ~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 148 EADKVILATGGLSYP 162 (400)
T ss_pred EcCEEEECCCCcccC
Confidence 999999999987654
No 146
>PRK06996 hypothetical protein; Provisional
Probab=99.17 E-value=4.7e-10 Score=96.58 Aligned_cols=132 Identities=16% Similarity=0.200 Sum_probs=82.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCC----CCeEEEeccCCCC------c---------------ccccCCCC--CeEEecc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQS----IPYVILERENCYA------S---------------IWKKYSYD--RLRLHLA 59 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g----~~v~lie~~~~~g------~---------------~~~~~~~~--~~~~~~~ 59 (255)
.+||+||||||+|+++|..|++.| .+|+|+|+.+... + .|.....+ .+.....
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 579999999999999999999987 4699999975221 0 11111111 1111100
Q ss_pred ccc--ccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEE
Q 025254 60 KQF--CQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (255)
Q Consensus 60 ~~~--~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i 136 (255)
... ..+....+...... .+++..+.+.|.+.+...++.+ ++++++++++... +.+++++.++..+ .+ +
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~--~~~~~v~~~~~~~--~~v~v~~~~~~g~----~~-i 161 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRW--LTSTTAHAPAQDA--DGVTLALGTPQGA----RT-L 161 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeeeeeeecC--CeEEEEECCCCcc----eE-E
Confidence 000 00100011111111 2456788888888888877554 8899999997765 6677776653221 57 9
Q ss_pred eeCEEEEeecC
Q 025254 137 SGRFLVVASGE 147 (255)
Q Consensus 137 ~~d~vViAtG~ 147 (255)
++|+||.|+|.
T Consensus 162 ~a~lvIgADG~ 172 (398)
T PRK06996 162 RARIAVQAEGG 172 (398)
T ss_pred eeeEEEECCCC
Confidence 99999999995
No 147
>PRK05868 hypothetical protein; Validated
Probab=99.16 E-value=1.3e-09 Score=92.99 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=76.5
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc---c--cc---------C----------CCCCeEEecccc--
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI---W--KK---------Y----------SYDRLRLHLAKQ-- 61 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~---~--~~---------~----------~~~~~~~~~~~~-- 61 (255)
+||+|||||++|+++|..|++.|++|+|+|+.+..... . .. . ....+.......
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 58999999999999999999999999999998754210 0 00 0 001111111110
Q ss_pred cccCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEe
Q 025254 62 FCQLPH-LPFPSSY--PM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (255)
Q Consensus 62 ~~~~~~-~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~ 137 (255)
+..... .+..... +. ...+.++.+.+.+.+ ..+++ ++++++|++++..+ +..+|++.++ .+ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~--~~v~v~~~dg-------~~-~~ 148 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVE--YLFDDSISTLQDDG--DSVRVTFERA-------AA-RE 148 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecC--CeEEEEECCC-------Ce-EE
Confidence 000000 0000000 00 012344444443322 23444 49999999998755 6777877765 57 89
Q ss_pred eCEEEEeecCCCC
Q 025254 138 GRFLVVASGETTN 150 (255)
Q Consensus 138 ~d~vViAtG~~s~ 150 (255)
+|.||.|+|..|.
T Consensus 149 adlvIgADG~~S~ 161 (372)
T PRK05868 149 FDLVIGADGLHSN 161 (372)
T ss_pred eCEEEECCCCCch
Confidence 9999999998774
No 148
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.16 E-value=9.4e-10 Score=97.37 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 80 ~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
...+...+...+.+.|..+ +.+++|+++...+ +.+.|.+.+.. + ++.+ ++++.||.|+|.|+.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~-g--~~~~-i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDAD-G--ETRT-VRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC-C--CEEE-EEecEEEECCCccHH
Confidence 3444455556677778766 8999999998865 56777776643 2 4478 999999999998763
No 149
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.15 E-value=8.6e-10 Score=94.68 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=76.9
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC------Cc--cccc--------CC----------CCCeEEeccc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------AS--IWKK--------YS----------YDRLRLHLAK 60 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~------g~--~~~~--------~~----------~~~~~~~~~~ 60 (255)
++||+|||||++|+++|..|++.|++|+|+|+.+.. +. .+.. .. ...+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 379999999999999999999999999999998741 11 1100 00 0111111011
Q ss_pred ccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEc-ccCCCCceeeEEEee
Q 025254 61 QFCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSG 138 (255)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~i~~ 138 (255)
....+.........+. ......+...+.+.+...+..+ +++.+++.+...+ .+...|++. ++ ++.+ +++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~~~~~v~~~~~~-~~~~~V~~~~~g-----~~~~-i~a 152 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTT--VYDADDVRLHDLA-GDRPYVTFERDG-----ERHR-LDC 152 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeE--EEeeeeEEEEecC-CCccEEEEEECC-----eEEE-EEe
Confidence 1111110000000000 1123455566666666666555 8888877775422 134456664 32 2257 899
Q ss_pred CEEEEeecCCCC
Q 025254 139 RFLVVASGETTN 150 (255)
Q Consensus 139 d~vViAtG~~s~ 150 (255)
|.||.|+|.+|.
T Consensus 153 dlvIGADG~~S~ 164 (390)
T TIGR02360 153 DFIAGCDGFHGV 164 (390)
T ss_pred CEEEECCCCchh
Confidence 999999998774
No 150
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.15 E-value=7.7e-10 Score=95.08 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=78.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC---CCCeEEEeccCCCC----c-------ccc--------cCCCCCeE---------
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYA----S-------IWK--------KYSYDRLR--------- 55 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~---g~~v~lie~~~~~g----~-------~~~--------~~~~~~~~--------- 55 (255)
.+||+|||||++|+++|..|++. |.+|+|+|+..... + .+. ...++.+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 48999999999999999999998 99999999952110 0 000 01111110
Q ss_pred -Eecccccc--cCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCc
Q 025254 56 -LHLAKQFC--QLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (255)
Q Consensus 56 -~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~ 130 (255)
........ .+....+..... ....+..+.+.+.+.+... ++.+ +++++|+++...+ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTL--HCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 00000000 000000000000 1134456666666665543 4544 8899999998765 6777777653
Q ss_pred eeeEEEeeCEEEEeecCCC
Q 025254 131 EIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 131 ~~~~~i~~d~vViAtG~~s 149 (255)
.. +.+|.||.|+|.+|
T Consensus 154 --~~-~~a~~vI~AdG~~S 169 (395)
T PRK05732 154 --ET-LTGRLLVAADGSHS 169 (395)
T ss_pred --CE-EEeCEEEEecCCCh
Confidence 57 89999999999766
No 151
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.15 E-value=7.5e-10 Score=94.88 Aligned_cols=131 Identities=13% Similarity=0.159 Sum_probs=77.8
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC--C-----c-----cccc--------CCCCCeEE---------e-
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--A-----S-----IWKK--------YSYDRLRL---------H- 57 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~--g-----~-----~~~~--------~~~~~~~~---------~- 57 (255)
+||+|||||++|+++|..|++.|++|+|+|+.+.. . + .+.. ..++.+.. .
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 79999999999999999999999999999986411 0 0 0000 11111100 0
Q ss_pred --cccccccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceee
Q 025254 58 --LAKQFCQLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE 133 (255)
Q Consensus 58 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~ 133 (255)
.......+........ .........+...+.+.+... ++. ++++++|++++..+ +.++|++.++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~--~~~~v~~~~g-------~ 152 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA--EGNRVTLESG-------A 152 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC--CeEEEEECCC-------C
Confidence 0000000000000000 001122334555555555443 444 48999999998876 5677887654 6
Q ss_pred EEEeeCEEEEeecCCCC
Q 025254 134 EYYSGRFLVVASGETTN 150 (255)
Q Consensus 134 ~~i~~d~vViAtG~~s~ 150 (255)
+ +++|.||.|+|..|.
T Consensus 153 ~-~~~~lvIgADG~~S~ 168 (384)
T PRK08849 153 E-IEAKWVIGADGANSQ 168 (384)
T ss_pred E-EEeeEEEEecCCCch
Confidence 7 999999999998764
No 152
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.12 E-value=4.9e-11 Score=103.38 Aligned_cols=131 Identities=15% Similarity=0.228 Sum_probs=35.6
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEe---------ccccccc-CCC---CCCC--CC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLH---------LAKQFCQ-LPH---LPFP--SS 73 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-~~~---~~~~--~~ 73 (255)
||||||||++|++||..+++.|.+|+|||+.+.+||............. ...++.. +.. .+.. ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 8999999999999999999999999999999999986544322111000 0001111 000 0000 00
Q ss_pred C--CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 74 Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 74 ~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+ ....+...+...+.+.+.+.++.+ ++++.|+++..++ .....|.+.+... ..+ ++++.+|.|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~g----~~~-i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKSG----RKE-IRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccc-ccccccccccccc----ccc-cccccccccccc
Confidence 0 012344555667777777788887 9999999999865 2344555554221 277 999999999995
No 153
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.12 E-value=4.8e-10 Score=96.65 Aligned_cols=167 Identities=23% Similarity=0.241 Sum_probs=103.6
Q ss_pred EEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCC-CCCHHHHHHH
Q 025254 10 VIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH 86 (255)
Q Consensus 10 vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 86 (255)
++|||+|++|+.+|..|.+. +.+++++........... +....... ......+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRC---------------------PLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCC---------------------ccchHHhcccCCHHHhccc
Confidence 58999999999999998886 457887777664321100 00000000 0011111111
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~~ 166 (255)
.. .....++.. +.+++|++++... . .+.+.+ .. +.+|++++||| +.+..++ +. .
T Consensus 60 ~~-~~~~~~i~~--~~~~~v~~id~~~--~--~v~~~~--------g~-~~yd~LvlatG--a~~~~~~--~~--~---- 113 (415)
T COG0446 60 PR-FNRATGIDV--RTGTEVTSIDPEN--K--VVLLDD--------GE-IEYDYLVLATG--ARPRPPP--IS--D---- 113 (415)
T ss_pred ch-hHHhhCCEE--eeCCEEEEecCCC--C--EEEECC--------Cc-ccccEEEEcCC--CcccCCC--cc--c----
Confidence 11 113445555 8888999998754 3 355555 24 88999999999 6665554 11 1
Q ss_pred CCCCcEEecccCCCC-----CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeeccc
Q 025254 167 TGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFE 226 (255)
Q Consensus 167 ~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (255)
....+........ .....++++|+|+|..|+++|..+.+.|.+|++++..+ ++++..
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~ 175 (415)
T COG0446 114 --WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQL 175 (415)
T ss_pred --cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhh
Confidence 1112222222211 11115799999999999999999999999999999998 777664
No 154
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.12 E-value=1.1e-09 Score=96.90 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=35.1
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
...+||+|||||..|+++|+.|++.|.+|+|+|+++..+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~ 42 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS 42 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 456999999999999999999999999999999986433
No 155
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.11 E-value=1.3e-09 Score=94.41 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=77.5
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC-CCeEEEeccCCCCcc------ccc--------CCCC--------------CeEEec
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASI------WKK--------YSYD--------------RLRLHL 58 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g-~~v~lie~~~~~g~~------~~~--------~~~~--------------~~~~~~ 58 (255)
.+|+|||||++|+++|..|++.| .+|+|+|+.+.+... +.. ...+ ......
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 599999998755321 110 0000 000000
Q ss_pred cc-ccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEE
Q 025254 59 AK-QFCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (255)
Q Consensus 59 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i 136 (255)
.. ....+........... ...+.++.+.|.+.+.. ..++++++|+++...+ +.+.|.+.++ .+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~ 146 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQA--EEVQVLFTDG-------TE-Y 146 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecC--CcEEEEEcCC-------CE-E
Confidence 00 0000000000000111 23455666666554422 2348899999998766 6688887664 67 8
Q ss_pred eeCEEEEeecCCCC
Q 025254 137 SGRFLVVASGETTN 150 (255)
Q Consensus 137 ~~d~vViAtG~~s~ 150 (255)
++|.||+|+|.+|.
T Consensus 147 ~ad~vVgADG~~S~ 160 (414)
T TIGR03219 147 RCDLLIGADGIKSA 160 (414)
T ss_pred EeeEEEECCCccHH
Confidence 99999999998764
No 156
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.10 E-value=1.3e-09 Score=96.56 Aligned_cols=132 Identities=15% Similarity=0.194 Sum_probs=78.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC-CCCcccccCCCCCeE----E---ecccccc---------cCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLR----L---HLAKQFC---------QLPHL 68 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~~----~---~~~~~~~---------~~~~~ 68 (255)
..+||+|||||++|+.||..+++.|.+|+++|+.. .+|+..+........ . +.....+ .+...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999984 444321111010000 0 0000000 00000
Q ss_pred CC---CC-C-CCCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEE
Q 025254 69 PF---PS-S-YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (255)
Q Consensus 69 ~~---~~-~-~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vV 142 (255)
.. +. + .....++..+...+.+.+... ++. .++..|+++...+ .....|.+.++ .. +.|+.||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG-------~~-I~Ak~VI 150 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG-------LE-FRAKAVV 150 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC-------CE-EECCEEE
Confidence 00 00 0 011345666777777777655 554 4567888887654 23334555543 67 9999999
Q ss_pred EeecCCC
Q 025254 143 VASGETT 149 (255)
Q Consensus 143 iAtG~~s 149 (255)
+|||.+.
T Consensus 151 lATGTFL 157 (618)
T PRK05192 151 LTTGTFL 157 (618)
T ss_pred EeeCcch
Confidence 9999654
No 157
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.09 E-value=2.2e-09 Score=91.80 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
.+...+...+.+.+...++.+ +.+++|+++...+ +.+.|.+.+ .+ +.+|.||+|+|.++.
T Consensus 142 i~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK--------GS-YQANKLVVTAGAWTS 201 (380)
T ss_pred EcHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCcchH
Confidence 345567777777777778765 8888999998765 566676644 46 899999999998653
No 158
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.08 E-value=2.5e-09 Score=70.42 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=64.5
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD 88 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (255)
+++|||||+.|+.+|..|.+.|.+|+++++.+.+... -..++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~---------------------------------~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG---------------------------------FDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT---------------------------------SSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh---------------------------------cCHHHHHHHH
Confidence 5899999999999999999999999999998854210 1136778888
Q ss_pred HHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcc
Q 025254 89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124 (255)
Q Consensus 89 ~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~ 124 (255)
+.+++.++++ ++++.+.++..++ +.++|++++
T Consensus 48 ~~l~~~gV~v--~~~~~v~~i~~~~--~~~~V~~~~ 79 (80)
T PF00070_consen 48 EYLRKRGVEV--HTNTKVKEIEKDG--DGVEVTLED 79 (80)
T ss_dssp HHHHHTTEEE--EESEEEEEEEEET--TSEEEEEET
T ss_pred HHHHHCCCEE--EeCCEEEEEEEeC--CEEEEEEec
Confidence 8888888777 9999999999987 335577665
No 159
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.06 E-value=3.5e-09 Score=90.41 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
.+...+...+.+.+.+.++.+ +.+++|+++...+ +.+.|.+.+ .. +.+|.||+|+|.++..
T Consensus 146 v~p~~~~~~~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~--------g~-~~a~~vV~A~G~~~~~ 206 (376)
T PRK11259 146 LRPELAIKAHLRLAREAGAEL--LFNEPVTAIEADG--DGVTVTTAD--------GT-YEAKKLVVSAGAWVKD 206 (376)
T ss_pred EcHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEeeC--CeEEEEeCC--------CE-EEeeEEEEecCcchhh
Confidence 344556666666666677665 8899999998865 567776654 46 8999999999987644
No 160
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.05 E-value=3.6e-09 Score=90.94 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
+...+.+.+.+.+.+.|+.+ +.+++|+++...+ +.+.|.+.+ .+ +.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~-i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ--------GE-YEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC--------CE-EEeCEEEECCCcch
Confidence 45677777777778878765 8899999998765 556666644 46 89999999999875
No 161
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.04 E-value=1.1e-08 Score=90.76 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=35.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.+||||||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 57999999999999999999999999999999987765
No 162
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.04 E-value=1.3e-08 Score=88.86 Aligned_cols=135 Identities=20% Similarity=0.162 Sum_probs=82.6
Q ss_pred eEEEECCCHHHHHHHHHHhhCC-CCeEEEeccCCCCcc--------cccCC--------CCCe-------------EEe-
Q 025254 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASI--------WKKYS--------YDRL-------------RLH- 57 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g-~~v~lie~~~~~g~~--------~~~~~--------~~~~-------------~~~- 57 (255)
||+|||+|.+|+++|..+++.| .+|+|+||.+..+|. |.... .+.. ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999998866542 11100 0000 000
Q ss_pred --------cc---cccccCCCCCCC---------CCCC-------CCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEE
Q 025254 58 --------LA---KQFCQLPHLPFP---------SSYP-------MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110 (255)
Q Consensus 58 --------~~---~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~ 110 (255)
.. -.++. ....+. ...+ .......+.+.+.+.+.+.++++ +++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeE
Confidence 00 00001 000000 0000 11234577888888888888776 9999999998
Q ss_pred EcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
.++......|.+.+.. + +... +.++.||+|+|.++.
T Consensus 158 ~~~~g~v~Gv~~~~~~-g--~~~~-~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKG-K--GIYI-KAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeCC-C--eEEE-EecceEEEecCCCCC
Confidence 8652233334443321 1 2246 789999999998765
No 163
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.02 E-value=4e-09 Score=91.79 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
....+.+.|-.+ +..++|+++...+ +.|.|.+.+..++ ++.. ++++.||.|+|.|+
T Consensus 170 ~a~~A~~~Ga~i--l~~~~v~~~~re~--~v~gV~~~D~~tg--~~~~-ira~~VVNAaGpW~ 225 (532)
T COG0578 170 NARDAAEHGAEI--LTYTRVESLRREG--GVWGVEVEDRETG--ETYE-IRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHHhcccch--hhcceeeeeeecC--CEEEEEEEecCCC--cEEE-EEcCEEEECCCccH
Confidence 333455667666 8889999999987 5788888887666 6688 99999999999885
No 164
>PLN02661 Putative thiazole synthesis
Probab=99.02 E-value=2.9e-09 Score=88.44 Aligned_cols=139 Identities=18% Similarity=0.225 Sum_probs=79.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC-CCCeEEEeccCCCCc-ccccCCC-CCeEEec-ccccccCCCCCCCCCCCCC---C
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYSY-DRLRLHL-AKQFCQLPHLPFPSSYPMF---V 78 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~-g~~v~lie~~~~~g~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~---~ 78 (255)
..+||+|||||++|+.+|+.|++. |.+|+|+|+...+|| .|....+ ..+.... ...+..--..++... ..| .
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv~ 169 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVIK 169 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEec
Confidence 357999999999999999999986 899999999887765 5543221 1111100 011111011112111 111 1
Q ss_pred CHHHHHHHHHHHHH-hcCCCCeeEeccEEEEEEEcCCCCcEEEEE------cccCCCC-ceeeEEEeeCEEEEeecCCC
Q 025254 79 SRAQFIEHLDHYVS-HFNIGPSIRYQRSVESASYDEATNMWNVKA------SNLLSPG-REIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 79 ~~~~~~~~l~~~~~-~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~------~~~~~~~-~~~~~~i~~d~vViAtG~~s 149 (255)
+..++...+.+.+. +.++.+ +.++.++++...+ +....+.+ .+..++. .+... ++++.||+|||+..
T Consensus 170 ha~e~~stLi~ka~~~~gVkI--~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~-I~AkaVVlATGh~g 244 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNV-MEAKVVVSSCGHDG 244 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEE--EeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeE-EECCEEEEcCCCCC
Confidence 23344455555443 456655 8888999998765 22222332 1211100 02257 89999999999653
No 165
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.01 E-value=7.1e-09 Score=83.98 Aligned_cols=145 Identities=21% Similarity=0.346 Sum_probs=93.4
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC--cc---------------------------cccCC-
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--SI---------------------------WKKYS- 50 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g--~~---------------------------~~~~~- 50 (255)
|+++....|++|||||.-|+++|++|+++|.++.++|+-+-+- |+ |+...
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 4566667899999999999999999999999999999976221 11 11100
Q ss_pred CCCeEEec---------------------------------ccccc-cCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 025254 51 YDRLRLHL---------------------------------AKQFC-QLP-HLPFPSSYP-------MFVSRAQFIEHLD 88 (255)
Q Consensus 51 ~~~~~~~~---------------------------------~~~~~-~~~-~~~~~~~~~-------~~~~~~~~~~~l~ 88 (255)
........ ..++. .|+ ..++++.+. ++.........++
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 00000000 00000 122 233333332 3455667778888
Q ss_pred HHHHhcCCCCeeEeccEEEEEEEcCC-CCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 025254 89 HYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (255)
Q Consensus 89 ~~~~~~~l~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~ 155 (255)
+.+.+.|..+ +.+..|..+...+. .....|.+.++ .. +.++.+|+++|+|-...+|.
T Consensus 161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g-------s~-Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG-------SI-YHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC-------Ce-eecceEEEEecHHHHhhcCc
Confidence 9999998776 88888888875432 23455666554 67 89999999999986555553
No 166
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.01 E-value=6.1e-09 Score=90.22 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=79.0
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc--ccc------CCC--------CCeE-------------Eec-
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--WKK------YSY--------DRLR-------------LHL- 58 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~--~~~------~~~--------~~~~-------------~~~- 58 (255)
||+|||+|.+|+++|..+++.|.+|+|+|+.+..++. |.. ... +... .+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999976652 111 000 0000 000
Q ss_pred ----------------ccccccCCC-------------CCCC----CCCC-----CCCCHHHHHHHHHHHHHhcCCCCee
Q 025254 59 ----------------AKQFCQLPH-------------LPFP----SSYP-----MFVSRAQFIEHLDHYVSHFNIGPSI 100 (255)
Q Consensus 59 ----------------~~~~~~~~~-------------~~~~----~~~~-----~~~~~~~~~~~l~~~~~~~~l~~~~ 100 (255)
......+.. .... .... .......+...+.+.+++.++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i-- 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDI-- 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEE--
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeee--
Confidence 000000111 0000 0000 11245677888888899888665
Q ss_pred EeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 101 RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 101 ~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
+++++++++..++ .....|...+..++ +... ++++.||+|||.++.
T Consensus 159 ~~~~~~~~Li~e~-g~V~Gv~~~~~~~g--~~~~-i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITED-GRVTGVVAENPADG--EFVR-IKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEET-TEEEEEEEEETTTC--EEEE-EEESEEEE----BGG
T ss_pred eccceeeeEEEeC-CceeEEEEEECCCC--eEEE-EeeeEEEeccCcccc
Confidence 9999999999975 23334445432222 4467 899999999998764
No 167
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.00 E-value=6e-09 Score=93.07 Aligned_cols=36 Identities=25% Similarity=0.545 Sum_probs=33.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
..+||+|||||..|+++|+.|+++|.+|+|+|++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 358999999999999999999999999999999763
No 168
>PLN02985 squalene monooxygenase
Probab=99.00 E-value=1.4e-08 Score=89.85 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=76.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-cccc-------------CC-----------CCCeEEeccc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKK-------------YS-----------YDRLRLHLAK 60 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~-------------~~-----------~~~~~~~~~~ 60 (255)
..+||+|||||++|+++|..|++.|.+|+|+|+...... .+.. .. ...+......
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g 121 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG 121 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence 357999999999999999999999999999999752211 0000 00 0111110000
Q ss_pred -c-cccCCCCC--CCCCCC-CCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeE
Q 025254 61 -Q-FCQLPHLP--FPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (255)
Q Consensus 61 -~-~~~~~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (255)
. ...++... .+.... ....+..+.+.+.+.+... ++.+ .. .+++++..++ +....|++...+ + ++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i--~~-gtvv~li~~~-~~v~gV~~~~~d-G--~~~~ 194 (514)
T PLN02985 122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL--EE-GTVKSLIEEK-GVIKGVTYKNSA-G--EETT 194 (514)
T ss_pred EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEE--Ee-eeEEEEEEcC-CEEEEEEEEcCC-C--CEEE
Confidence 0 01111100 000000 1234667888888877665 4443 44 4677776544 122234443221 1 3356
Q ss_pred EEeeCEEEEeecCCCC
Q 025254 135 YYSGRFLVVASGETTN 150 (255)
Q Consensus 135 ~i~~d~vViAtG~~s~ 150 (255)
+.+|.||.|+|.+|.
T Consensus 195 -~~AdLVVgADG~~S~ 209 (514)
T PLN02985 195 -ALAPLTVVCDGCYSN 209 (514)
T ss_pred -EECCEEEECCCCchH
Confidence 789999999998774
No 169
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.99 E-value=2.1e-08 Score=88.23 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=75.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+|+|||||+.|+.+|..|++.|.+|+++|+.+.+. +. . ..++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~-~-~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT-E-DAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc-C-CHHHHHH
Confidence 5799999999999999999999999999999977431 00 0 1356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|+++...+.++...+...++ ++.+ +.+|.||+|+| ..|+..
T Consensus 227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNG-----EEKT-LEADKVLVSVG--RRPNTE 284 (472)
T ss_pred HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCC-----ceEE-EEeCEEEEeeC--CccCCC
Confidence 777778888776 9999999997521113222223232 2257 89999999999 556544
No 170
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.98 E-value=7.6e-09 Score=90.73 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
.+...+...+.+.+.+.|+.+ +.++.|++++. + +.+.|.+.+ .. +.+|.||+|+|.++..
T Consensus 180 i~P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~-~--~~~~v~t~~--------g~-v~A~~VV~Atga~s~~ 239 (460)
T TIGR03329 180 VQPGLLVRGLRRVALELGVEI--HENTPMTGLEE-G--QPAVVRTPD--------GQ-VTADKVVLALNAWMAS 239 (460)
T ss_pred ECHHHHHHHHHHHHHHcCCEE--ECCCeEEEEee-C--CceEEEeCC--------cE-EECCEEEEcccccccc
Confidence 345566677777777888776 89999999975 2 446666654 56 8999999999987653
No 171
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.98 E-value=1.5e-08 Score=87.71 Aligned_cols=107 Identities=16% Similarity=0.182 Sum_probs=84.7
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
..+.+++|||||+.|+..|..++++|.+|+|+|+.+.+- +.+ -.++.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL----------------------p~~-----------D~ei~ 217 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL----------------------PGE-----------DPEIS 217 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC----------------------CcC-----------CHHHH
Confidence 357899999999999999999999999999999988642 111 14788
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCC
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~ 156 (255)
+.+.+.+++.++.+ +.+++++.++..+ +...+.+.++.. .+ +++|.|++|+| .+|+..++
T Consensus 218 ~~~~~~l~~~gv~i--~~~~~v~~~~~~~--~~v~v~~~~g~~-----~~-~~ad~vLvAiG--R~Pn~~~L 277 (454)
T COG1249 218 KELTKQLEKGGVKI--LLNTKVTAVEKKD--DGVLVTLEDGEG-----GT-IEADAVLVAIG--RKPNTDGL 277 (454)
T ss_pred HHHHHHHHhCCeEE--EccceEEEEEecC--CeEEEEEecCCC-----CE-EEeeEEEEccC--CccCCCCC
Confidence 88888888866666 9999999998876 336777766522 37 89999999999 66776643
No 172
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.98 E-value=8.3e-09 Score=86.98 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=74.2
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEE-eccCCCCcccccCCCCCe---------------EEeccc-ccccCCCCC--
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSYDRL---------------RLHLAK-QFCQLPHLP-- 69 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~li-e~~~~~g~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~-- 69 (255)
||+|||||+||+.||.++++.|.+|+|+ .+.+.++..-+....... .....+ ...++....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 8999999999999999999999999999 444434332211111000 000000 000000000
Q ss_pred --CCCC-CCCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEee
Q 025254 70 --FPSS-YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS 145 (255)
Q Consensus 70 --~~~~-~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAt 145 (255)
+..+ .....++..+..++++.++.. ++. ..+.+|+++...+ +....|.+.++ .. +.+|.||+||
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~---i~~~~V~~l~~e~-~~v~GV~~~~g-------~~-~~a~~vVlaT 148 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLT---IIQGEVTDLIVEN-GKVKGVVTKDG-------EE-IEADAVVLAT 148 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE---EEES-EEEEEECT-TEEEEEEETTS-------EE-EEECEEEE-T
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeE---EEEcccceEEecC-CeEEEEEeCCC-------CE-EecCEEEEec
Confidence 0001 112467889999999988874 444 4577999998866 34556677664 78 9999999999
Q ss_pred cC
Q 025254 146 GE 147 (255)
Q Consensus 146 G~ 147 (255)
|.
T Consensus 149 Gt 150 (392)
T PF01134_consen 149 GT 150 (392)
T ss_dssp TT
T ss_pred cc
Confidence 95
No 173
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.97 E-value=1.4e-08 Score=87.87 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
+...+...+.+.+.+.|+.+ +.+++|+++...+ +.+.+.+.+...+ +... +++|.||+|+|.++
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~--~~~~-i~a~~vV~a~G~~s 258 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQF--RYGQEVTSIKTDG--GGVVLTVQPSAEH--PSRT-LEFDGVVVCAGVGS 258 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCCC--ccce-EecCEEEECCCcCh
Confidence 33455666677777888766 8889999998765 5666655442110 0147 89999999999875
No 174
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.96 E-value=1.1e-08 Score=92.62 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=34.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.++||+|||||..|+++|+.|++.|++|+|+|+++...|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999864333
No 175
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.96 E-value=1.3e-08 Score=89.30 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHh----cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 78 VSRAQFIEHLDHYVSH----FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~----~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
.+...+...+.+.+.+ .|..+.++++++|+++...+ ++.|.|.+.+ .+ +++|+||+|+|.++.
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~--------G~-i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR--------GE-IRARFVVVSACGYSL 274 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC--------CE-EEeCEEEECcChhHH
Confidence 4455677777777777 66444559999999999864 2567787765 56 899999999998763
No 176
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.96 E-value=1.1e-08 Score=92.12 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=78.2
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC-C-C-ccccc-------------CC----C---------CCeE
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-Y-A-SIWKK-------------YS----Y---------DRLR 55 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~-~-g-~~~~~-------------~~----~---------~~~~ 55 (255)
..+.+|+|||||++|+++|..|++.|++|+|+|+.+. . + |.+.. .. . ....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 3468999999999999999999999999999999751 1 1 11100 00 0 0000
Q ss_pred E----ecccc--cccCCCCCCCC--CCC--CCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEccc
Q 025254 56 L----HLAKQ--FCQLPHLPFPS--SYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL 125 (255)
Q Consensus 56 ~----~~~~~--~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~ 125 (255)
. +.... ...+....... ..+ ..+.+.++.+.|.+. .+.. .++++++|+++...+ +.+++.+.++
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~--d~VtV~~~dG 232 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG--DKVTVVLENG 232 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC--CEEEEEECCC
Confidence 0 00000 01111100000 011 123456666666442 2222 247888999998765 6777777664
Q ss_pred CCCCceeeEEEeeCEEEEeecCCCC
Q 025254 126 LSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 126 ~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
.+ +++|.||.|+|.+|.
T Consensus 233 -------~t-i~aDlVVGADG~~S~ 249 (668)
T PLN02927 233 -------QR-YEGDLLVGADGIWSK 249 (668)
T ss_pred -------CE-EEcCEEEECCCCCcH
Confidence 67 899999999998773
No 177
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.95 E-value=4.9e-08 Score=85.72 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=77.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+++++|||||+.|+.+|..|.+.|.+|+++|+.+.+. +. . ..++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l----------------------~~----------~-~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL----------------------PG----------E-DAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC----------------------CC----------C-CHHHHHH
Confidence 5799999999999999999999999999999977431 00 0 1355667
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|++++..+ +.+.+...++ ++.+ +.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGG-----ETET-LTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCC-----cEEE-EEeCEEEEecC--CcccCC
Confidence 777778778766 9999999998765 5555554332 2257 89999999999 555544
No 178
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.95 E-value=2.9e-08 Score=87.29 Aligned_cols=138 Identities=15% Similarity=0.240 Sum_probs=80.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC--CCcc--cccCC---CC---CeEE--eccccc-----------
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YASI--WKKYS---YD---RLRL--HLAKQF----------- 62 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~--~g~~--~~~~~---~~---~~~~--~~~~~~----------- 62 (255)
..+||+|||+|++|+++|..+++.|.+|+|+||.+. .||. +.... .. .... .....+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 458999999999999999999999999999999873 3441 11000 00 0000 000000
Q ss_pred -------------------ccCCCCCCCCCC------C--C---CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEc
Q 025254 63 -------------------CQLPHLPFPSSY------P--M---FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD 112 (255)
Q Consensus 63 -------------------~~~~~~~~~~~~------~--~---~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~ 112 (255)
+.-...++.... . . ......+...+.+.+++.++.+ +.+++|+++...
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i--~~~t~v~~l~~~ 160 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEI--RYDAPVTALELD 160 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEE--EcCCEEEEEEec
Confidence 000000000000 0 0 0013456677777788888766 999999999875
Q ss_pred CCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 113 EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 113 ~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
+ .....|...+. ++ +... ++++.||+|+|.++.
T Consensus 161 ~-g~v~gv~~~~~-~g--~~~~-i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 161 D-GRFVGARAGSA-AG--GAER-IRAKAVVLAAGGFES 193 (466)
T ss_pred C-CeEEEEEEEcc-CC--ceEE-EECCEEEECCCCCCC
Confidence 4 22333444221 11 2267 899999999997653
No 179
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.95 E-value=1.4e-09 Score=69.00 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=40.5
Q ss_pred EECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEeccc
Q 025254 12 MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK 60 (255)
Q Consensus 12 IIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~ 60 (255)
|||||++|+++|..|++.|.+|+|+|+.+.+||.+.....+....+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~ 49 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGA 49 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeecc
Confidence 8999999999999999999999999999999998776555555554443
No 180
>PRK08275 putative oxidoreductase; Provisional
Probab=98.95 E-value=3.2e-08 Score=88.67 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=81.0
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCC-cccccC--CCCC-eE--Eecccccc-------------
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKY--SYDR-LR--LHLAKQFC------------- 63 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g-~~~~~~--~~~~-~~--~~~~~~~~------------- 63 (255)
...+||+|||+|.+|++||..+++. |.+|+|+||....+ +..... .... +. .+.+..++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 3458999999999999999999987 68999999987532 221100 0000 00 00000000
Q ss_pred -----------------cCCCCCCCC------------CCC----CCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEE
Q 025254 64 -----------------QLPHLPFPS------------SYP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110 (255)
Q Consensus 64 -----------------~~~~~~~~~------------~~~----~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~ 110 (255)
.--..++.. ... .......+.+.|.+.+.+.++.+ +.++.++++.
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v~~Li 164 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMATRLL 164 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEEEEEE
Confidence 000000000 000 01234567788888888877766 9999999998
Q ss_pred EcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
..++.....+...+..++ +... +.++.||+|||+.+.
T Consensus 165 ~~~~g~v~Gv~~~~~~~g--~~~~-i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 165 TDADGRVAGALGFDCRTG--EFLV-IRAKAVILCCGAAGR 201 (554)
T ss_pred EcCCCeEEEEEEEecCCC--cEEE-EECCEEEECCCCccc
Confidence 753222223332222122 3356 899999999998654
No 181
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.95 E-value=1.1e-08 Score=87.11 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=71.3
Q ss_pred eEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCCc--ccccCCCCCe-----------EEecccccccCCCCCCCC-
Q 025254 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSYDRL-----------RLHLAKQFCQLPHLPFPS- 72 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g~--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~- 72 (255)
||+|||||++|+++|..|++. |.+|+++|+.+..++ +|..-..+.- ...-......++......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887765 4432111000 000000000000000000
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
.....+...++.+++.+.+. .. ++++++|+++. . +. |++.++ .+ ++++.||.|+|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~---~~--i~~~~~V~~v~--~--~~--v~l~dg-------~~-~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFP---EG--VILGRKAVGLD--A--DG--VDLAPG-------TR-INARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhc---cc--EEecCEEEEEe--C--CE--EEECCC-------CE-EEeeEEEECCCCCC
Confidence 01112345666666654332 22 37788999883 2 33 444443 67 99999999999654
No 182
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.95 E-value=2.1e-08 Score=85.60 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
++..++...+.+.+.+.|..+ +++++|++++..++ +.+.+.+.++. .+ ++|+.||.|.|..+
T Consensus 150 V~~~~~t~~l~e~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~------~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 150 VDPGELTRALAEEAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGE------ET-LEAKFVINAAGLYA 211 (429)
T ss_pred EcHHHHHHHHHHHHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCc------EE-EEeeEEEECCchhH
Confidence 445677777777788878777 99999999999872 24555555532 56 89999999999865
No 183
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.94 E-value=1.6e-08 Score=86.04 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
+||+|||||.+|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999763
No 184
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.94 E-value=9.5e-09 Score=94.02 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
.+...+...+.+.+.. ++.+ +.+++|+++...+ +.|.|.+.++ .. +++|.||+|+|.++.
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLTI--HFGHEVARLERED--DGWQLDFAGG-------TL-ASAPVVVLANGHDAA 464 (662)
T ss_pred eCHHHHHHHHHHhccc-CcEE--EeCCEeeEEEEeC--CEEEEEECCC-------cE-EECCEEEECCCCCcc
Confidence 3445666666666666 6655 8899999998766 6777776543 55 789999999998764
No 185
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.92 E-value=1.1e-07 Score=83.51 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=77.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . . ..++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~-~-d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------------------R-E-EPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------------------c-c-CHHHHHH
Confidence 47999999999999999999999999999999764310 0 0 1255677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|+++...+ +...+.+....++ .+ +.+|.||+|+| ..|+..
T Consensus 213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPGGQ----GE-VEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEEeEC--CCcCCC
Confidence 777777778776 9999999998754 4455555321111 67 99999999999 555544
No 186
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.92 E-value=3.4e-08 Score=84.52 Aligned_cols=98 Identities=11% Similarity=0.169 Sum_probs=75.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ...+ ..+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~~~-~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SLMP-PEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hhCC-HHHHHH
Confidence 57899999999999999999999999999998774310 0001 245566
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
+.+.+++.++.+ +++++++++...+ +.+.+.+.++ .+ +.+|.||+|+|..
T Consensus 189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vI~a~G~~ 238 (377)
T PRK04965 189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG-------RS-IEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC-------cE-EECCEEEECcCCC
Confidence 777778888766 8899999998754 5566776553 67 9999999999943
No 187
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.92 E-value=3.3e-08 Score=87.73 Aligned_cols=131 Identities=13% Similarity=0.187 Sum_probs=79.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc-ccccCCC-----CCeE--Eeccccc---------ccCCCCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSY-----DRLR--LHLAKQF---------CQLPHLPF 70 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~-~~~~~~~-----~~~~--~~~~~~~---------~~~~~~~~ 70 (255)
+||+|||||++|+.+|..+++.|.+|+|+|+.....+ ..+.... ..+. ++..... ..+.....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 5999999999999999999999999999998753221 1111000 0000 0000000 00111100
Q ss_pred ---CC-CC-CCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEe
Q 025254 71 ---PS-SY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (255)
Q Consensus 71 ---~~-~~-~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViA 144 (255)
+. +. ....++..+...+.+.+++. ++. .....|+++...+++....|.+.++ .. +.|+.||+|
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~V~GV~t~~G-------~~-I~Ad~VILA 149 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDEIKGVVTQDG-------LK-FRAKAVIIT 149 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCcEEEEEECCC-------CE-EECCEEEEc
Confidence 00 11 12456777888888888877 444 4556788886643234556666553 57 999999999
Q ss_pred ecCCC
Q 025254 145 SGETT 149 (255)
Q Consensus 145 tG~~s 149 (255)
||.+.
T Consensus 150 TGtfL 154 (617)
T TIGR00136 150 TGTFL 154 (617)
T ss_pred cCccc
Confidence 99764
No 188
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=5.1e-08 Score=87.82 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=36.7
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
|+-.....||+|||+|.+|++||..+++.|.+|+|+||....+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~ 43 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTR 43 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4434456899999999999999999999999999999986443
No 189
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=4.3e-08 Score=89.01 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
.+||+|||+|.+|++||..+++.|.+|+|+|+...++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 5799999999999999999999999999999866543
No 190
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.91 E-value=9.9e-08 Score=83.70 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=75.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHH
Confidence 5799999999999999999999999999999876431 00 01356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|++++..+ ..+.+...+ ++.+ +.+|.|++|+| ..|+..
T Consensus 217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~~g------~~~~-i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEYEG------SIQE-VNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEECC------ceEE-EEeCEEEEecC--CccCCC
Confidence 777788878776 9999999997654 343333221 2257 89999999999 555543
No 191
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.90 E-value=5.5e-08 Score=88.16 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=34.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.+||+|||+|.+|++||..+++.|.+|+|+||....++
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 57999999999999999999999999999999875443
No 192
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.90 E-value=4.5e-08 Score=88.36 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
..+||+|||+|.+|++||..+++.|.+|+|+||....+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 35799999999999999999999999999999986433
No 193
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.90 E-value=6.7e-08 Score=87.49 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=34.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+||+|||+|.+|++||..+++.|.+|+|+||....++
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 357999999999999999999999999999999875444
No 194
>PRK07121 hypothetical protein; Validated
Probab=98.90 E-value=7.9e-09 Score=91.40 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=35.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.+||+|||+|.+|+++|..+++.|.+|+|+||....+|
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999887665
No 195
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.90 E-value=1.1e-07 Score=83.53 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=78.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+++++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL----------------------PG-----------EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC----------------------Cc-----------CCHHHHHH
Confidence 5799999999999999999999999999999977431 00 01356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|+++...+ +.+.+...++. ++.. +.+|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~gg----~~~~-i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDGG----KEET-LEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeCC----eeEE-EEeCEEEEeeC--CccCCC
Confidence 777788878766 9999999998765 45555554321 3367 89999999999 555543
No 196
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.89 E-value=3.9e-09 Score=92.03 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
+.++..+.++|.+.+.+.|++. +. .+|+.+...++.....|.+.++ .+ +++|++|-|+|..+
T Consensus 150 hlDR~~fd~~L~~~A~~~Gv~~--~~-g~V~~v~~~~~g~i~~v~~~~g-------~~-i~ad~~IDASG~~s 211 (454)
T PF04820_consen 150 HLDRAKFDQFLRRHAEERGVEV--IE-GTVVDVELDEDGRITAVRLDDG-------RT-IEADFFIDASGRRS 211 (454)
T ss_dssp EEEHHHHHHHHHHHHHHTT-EE--EE-T-EEEEEE-TTSEEEEEEETTS-------EE-EEESEEEE-SGGG-
T ss_pred EEeHHHHHHHHHHHHhcCCCEE--Ee-CEEEEEEEcCCCCEEEEEECCC-------CE-EEEeEEEECCCccc
Confidence 4678999999999999999874 44 4788888877333345666664 78 99999999999643
No 197
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.89 E-value=5.8e-08 Score=85.15 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~ 40 (255)
..+||+|||||.+|+++|+.|++. +.+|+|+|+.+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~ 41 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLD 41 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 468999999999999999999998 79999999943
No 198
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=5.2e-08 Score=87.14 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=82.2
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC-CCcc--cccCCC-------CCe-------------EEe
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASI--WKKYSY-------DRL-------------RLH 57 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~-~g~~--~~~~~~-------~~~-------------~~~ 57 (255)
|......+||+|||+|.+|++||..+ +.|.+|+|+||... .+|. +....+ +.. ..+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d 79 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLND 79 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 54445578999999999999999999 88999999999764 3331 110000 000 000
Q ss_pred ----------ccc--ccccCCCCCCCC-----------C---CC-----CCCCHHHHHHHHHHHHHhcCCCCeeEeccEE
Q 025254 58 ----------LAK--QFCQLPHLPFPS-----------S---YP-----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSV 106 (255)
Q Consensus 58 ----------~~~--~~~~~~~~~~~~-----------~---~~-----~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v 106 (255)
.+. .++.--..++.. . ++ .-.+...+...+.+.+.+.++.+ +.++.+
T Consensus 80 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~t~v 157 (543)
T PRK06263 80 PKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKI--LEEVMA 157 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEE--EeCeEe
Confidence 000 000000000100 0 00 00124567777777777777666 999999
Q ss_pred EEEEEcCCCC-cEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 107 ESASYDEATN-MWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 107 ~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
+++..++ ++ ...+...+..++ +... +.++.||+|||+.+.
T Consensus 158 ~~Li~~~-~~~v~Gv~~~~~~~g--~~~~-i~AkaVIlATGG~~~ 198 (543)
T PRK06263 158 IKLIVDE-NREVIGAIFLDLRNG--EIFP-IYAKATILATGGAGQ 198 (543)
T ss_pred eeeEEeC-CcEEEEEEEEECCCC--cEEE-EEcCcEEECCCCCCC
Confidence 9998754 22 233333221111 3357 899999999998654
No 199
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.88 E-value=5.2e-08 Score=85.02 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-------------------------------R--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-------------------------------C--CCHHHHHH
Confidence 57999999999999999999999999999999774310 0 01355667
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|++++..+ +.+.+...+ .+ +.+|.||+|+| ..|+..
T Consensus 204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~~g--------~~-i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVTED--------ET-YRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEECC--------eE-EEcCEEEEeeC--CCCCcc
Confidence 777778888776 8999999998654 444444322 67 89999999999 555543
No 200
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.88 E-value=6.4e-08 Score=83.64 Aligned_cols=35 Identities=40% Similarity=0.552 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC-CC-CeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~-g~-~v~lie~~~ 40 (255)
..+||+|||||..|+++|++|++. |. +|+|+|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 468999999999999999999985 85 899999976
No 201
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=1e-07 Score=85.95 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
..+||+|||+|.+|++||..+++.|.+|+|+|+...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 357999999999999999999999999999999753
No 202
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=8.3e-08 Score=86.51 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=33.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
+.||+|||+|.+|+++|..+++.|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4699999999999999999999999999999987543
No 203
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.86 E-value=5.2e-08 Score=87.01 Aligned_cols=139 Identities=14% Similarity=0.071 Sum_probs=81.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc--cccCCC-------CCe--------E-----E--------
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--WKKYSY-------DRL--------R-----L-------- 56 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~--~~~~~~-------~~~--------~-----~-------- 56 (255)
.+||+|||+|.+|+++|..+++.|.+|+|+||....+|. +..... +.. . .
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 589999999999999999999999999999998865431 100000 000 0 0
Q ss_pred --ecc-------cccccCCCC-------------CCCCCC--CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEc
Q 025254 57 --HLA-------KQFCQLPHL-------------PFPSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD 112 (255)
Q Consensus 57 --~~~-------~~~~~~~~~-------------~~~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~ 112 (255)
+.+ ..-..|... ...... ....+...+.+.|.+.+++.++.+ +.++.|+++...
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i--~~~~~v~~Li~~ 173 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDI--REHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEE--EECeEeeeeEEc
Confidence 000 000001000 000000 001245677888888888877655 999999999875
Q ss_pred CCCCcEEEEEcc---cCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 113 EATNMWNVKASN---LLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 113 ~~~~~~~v~~~~---~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
++.....+...+ +..+ .... +.++.||+|||+++.
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~--g~~~-i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPD--GVGA-VHAPAVVLATGGLGQ 211 (541)
T ss_pred CCCeEEEEEEEeccCCCCC--cEEE-EEcCeEEECCCCCCC
Confidence 421222333321 0111 1256 899999999998764
No 204
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.85 E-value=6.2e-08 Score=85.21 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
++...+...+.+.+.+.|+.+ +++++|+++...+ ++.|.+.+.+..++ +..+ +++|+||+|+|.++.
T Consensus 175 Vdp~~l~~aL~~~a~~~Gv~i--~~~t~V~~i~~~~-~~~v~v~~~~~~~g--~~~~-i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 175 VDFGALTKQLLGYLVQNGTTI--RFGHEVRNLKRQS-DGSWTVTVKNTRTG--GKRT-LNTRFVFVGAGGGAL 241 (483)
T ss_pred ECHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCeEEEEEeeccCC--ceEE-EECCEEEECCCcchH
Confidence 345667777777777777666 9999999998754 24577765432221 1247 899999999998763
No 205
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=8.9e-08 Score=85.95 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=34.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+||+|||+|.+|+++|..+++.|.+|+|+||....++
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 358999999999999999999999999999999864443
No 206
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.84 E-value=8.7e-08 Score=86.66 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENC 41 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~ 41 (255)
.+||+|||+|.+|++||..+++. |.+|+|+||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 57999999999999999999998 999999999874
No 207
>PRK06370 mercuric reductase; Validated
Probab=98.84 E-value=9.7e-08 Score=83.90 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... ...++.+
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~---------------------------------~~~~~~~ 216 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR---------------------------------EDEDVAA 216 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc---------------------------------cCHHHHH
Confidence 3579999999999999999999999999999997743100 0135667
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
.+.+.+++.++.+ +.+++|.++...+ +...+.+....++ .+ +.+|.||+|+| ..|+..
T Consensus 217 ~l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 217 AVREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNGGA----PE-ITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEECcC--CCcCCC
Confidence 7777788888776 9999999998765 4444444321111 67 89999999999 555543
No 208
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=3.3e-07 Score=80.82 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=78.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .+ .++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~-~d-~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------------------A-AD-EQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------------------c-CC-HHHHHH
Confidence 57999999999999999999999999999999764310 0 01 356667
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|+++...+ +...+...++. + ++.. +.+|.|++|+| ..|+..
T Consensus 230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~-g--~~~~-i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDAD-G--EAQT-LEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCC-C--ceeE-EEcCEEEEccC--CccCCC
Confidence 777777777766 9999999998765 44555544321 1 3367 89999999999 556554
No 209
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.82 E-value=1.1e-07 Score=83.63 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=77.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. .. ..++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------------------~~-d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS--------------------------------FL-DDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------------------cC-CHHHHHH
Confidence 57999999999999999999999999999999764310 00 1356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.+++.++.+ +.+++|+++...+ +.+.+.+.++ .+ +.+|.|++|+| .+|+.
T Consensus 222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vi~a~G--~~p~~ 274 (461)
T PRK05249 222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG-------KK-IKADCLLYANG--RTGNT 274 (461)
T ss_pred HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC-------CE-EEeCEEEEeec--CCccc
Confidence 777777778766 8999999998755 4555655443 57 89999999999 44544
No 210
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=2.6e-07 Score=81.23 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=77.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||+|+.|+.+|..|++.|.+|+++|+.+.+. +. . ..++.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~-~-d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN-E-DAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc-c-CHHHHHH
Confidence 5799999999999999999999999999999876431 00 0 1356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|+++...+ +...+.+... ++ +..+ +.+|.||+|+| .+|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~-~g--~~~~-i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKK-DG--KAQE-LEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEec-CC--CeEE-EEeCEEEECcC--cccCCC
Confidence 777788888776 9999999998654 4455554311 11 2257 89999999999 555543
No 211
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.82 E-value=1.4e-07 Score=77.88 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=112.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+++++|||||..||..+.--.++|.+||++|-.+.+++... .++..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------~Eisk 256 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------GEISK 256 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------HHHHH
Confidence 478999999999999999999999999999999887764421 27778
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCccccccC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~~~~~~ 165 (255)
.++..+...++.+ .++++|+++..+.+ +...+++.+..++ +..+ +++|.+++|+| .+|...++ |++...=.
T Consensus 257 ~~qr~L~kQgikF--~l~tkv~~a~~~~d-g~v~i~ve~ak~~--k~~t-le~DvlLVsiG--RrP~t~GL-gle~iGi~ 327 (506)
T KOG1335|consen 257 AFQRVLQKQGIKF--KLGTKVTSATRNGD-GPVEIEVENAKTG--KKET-LECDVLLVSIG--RRPFTEGL-GLEKIGIE 327 (506)
T ss_pred HHHHHHHhcCcee--EeccEEEEeeccCC-CceEEEEEecCCC--ceeE-EEeeEEEEEcc--CcccccCC-Chhhcccc
Confidence 8888888888887 99999999999873 3777888777665 5578 99999999999 66665443 22221000
Q ss_pred CCCCCcEEecccCCCCCCCCCCeEEEEcCCcCHHHHHHHHhhhcC
Q 025254 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (255)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~~~e~a~~l~~~g~ 210 (255)
.-+.+++.....+. ..-.++-.||.-.-|.=+|....+.|.
T Consensus 328 ~D~r~rv~v~~~f~----t~vP~i~~IGDv~~gpMLAhkAeeegI 368 (506)
T KOG1335|consen 328 LDKRGRVIVNTRFQ----TKVPHIYAIGDVTLGPMLAHKAEEEGI 368 (506)
T ss_pred cccccceecccccc----ccCCceEEecccCCcchhhhhhhhhch
Confidence 00012222222111 123468888877766667766666654
No 212
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.82 E-value=8.3e-08 Score=84.78 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=78.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc--cccCCCCCeEE--ec-----------------c------
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--WKKYSYDRLRL--HL-----------------A------ 59 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~--~~~~~~~~~~~--~~-----------------~------ 59 (255)
.+||+|||+|.+|+++|..+++.|. |+|+||.+..++. |.......... +. +
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3699999999999999999999997 9999998754431 11100000000 00 0
Q ss_pred ------------cccccCCCC---CCC------CCCC-----CCCCHHHHHHHHHHHHHh-cCCCCeeEeccEEEEEEEc
Q 025254 60 ------------KQFCQLPHL---PFP------SSYP-----MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYD 112 (255)
Q Consensus 60 ------------~~~~~~~~~---~~~------~~~~-----~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~v~~i~~~ 112 (255)
..-..|... .+. ...+ ...+...+.+.|.+.+.+ .++.+ +.++.|+++...
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i--~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRI--IEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEE--EECeEeeeeecc
Confidence 000001000 000 0000 012345777778777776 56665 999999999765
Q ss_pred CCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 113 EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 113 ~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
+ .....+...+.. +... +.++.||+|||+++.
T Consensus 159 ~-g~v~Gv~~~~~~----~~~~-i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 T-GRVVGVWVWNRE----TVET-CHADAVVLATGGAGK 190 (488)
T ss_pred C-CEEEEEEEEECC----cEEE-EEcCEEEECCCcccC
Confidence 4 122224443321 2256 899999999998765
No 213
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.82 E-value=9.4e-08 Score=83.10 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+||+|||+|.+|++||..+. .|.+|+|+||.+..++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 3589999999999999999985 6999999999886554
No 214
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.82 E-value=1.5e-07 Score=84.82 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.4
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
||+|||+|.+|+++|..+++.|.+|+|+||....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999987543
No 215
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.81 E-value=5.8e-08 Score=85.23 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=32.2
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
+||+|||+|.+|+++|..+++.|.+|+|+|+...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999763
No 216
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.81 E-value=5.9e-08 Score=83.53 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++++|||+|+.|+.+|..|.+.|.+|+++|+.+.+... .....+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 478999999999999999999999999999997743210 001355677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+.+.+++.++.+ +++++++++.. + +...+.+.++ .+ +.+|.||+|+|.
T Consensus 192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g-------~~-i~aD~Vv~a~G~ 239 (396)
T PRK09754 192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG-------ET-LQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC-------CE-EECCEEEECCCC
Confidence 777778888776 99999999875 2 4455666543 67 899999999994
No 217
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.79 E-value=1.9e-07 Score=82.10 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=77.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+++++|||+|+.|+.+|..|.+.|.+|+++|+.+.+. +. .+ .++.+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~-~d-~~~~~ 219 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG-TD-TETAK 219 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC-CC-HHHHH
Confidence 36899999999999999999999999999999876431 00 00 25567
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
.+.+.+++.++.+ +.+++|+++...+ +...+.+....++ +... +.+|.|++|+| ..|+.
T Consensus 220 ~l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~pn~ 278 (466)
T PRK06115 220 TLQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAGG--AAET-LQADYVLVAIG--RRPYT 278 (466)
T ss_pred HHHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCCC--ceeE-EEeCEEEEccC--Ccccc
Confidence 7777778778776 9999999998654 4455544321111 2267 89999999999 55544
No 218
>PRK06116 glutathione reductase; Validated
Probab=98.79 E-value=1.5e-07 Score=82.36 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=77.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... . ..++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~-~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG--------------------------------F-DPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc--------------------------------c-CHHHHHH
Confidence 579999999999999999999999999999987642100 0 1256677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|.++...+ ++.+.+.+.++ .+ +.+|.||+|+| ..|+..
T Consensus 214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g-------~~-i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG-------ET-LTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC-------cE-EEeCEEEEeeC--CCcCCC
Confidence 777788888766 9999999998754 13356666543 67 89999999999 555543
No 219
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.78 E-value=1.1e-07 Score=85.66 Aligned_cols=39 Identities=26% Similarity=0.529 Sum_probs=36.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+||+|||+|++|+++|..+++.|.+|+|+||....||
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 478999999999999999999999999999999887665
No 220
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=1.9e-07 Score=84.77 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=34.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
.+||+|||+|.+|++||..+++.|.+|+|+|+....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5799999999999999999999999999999987543
No 221
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.77 E-value=7.5e-08 Score=80.27 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=84.9
Q ss_pred ccCCCeEEEECCCHHHHHHHHHHhhC------CCCeEEEeccCCCCccccc------CCC--------------------
Q 025254 4 QAAGVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKK------YSY-------------------- 51 (255)
Q Consensus 4 ~~~~~~vvIIG~G~~Gl~~a~~l~~~------g~~v~lie~~~~~g~~~~~------~~~-------------------- 51 (255)
....+||+||||||+||++|..|.++ ..+|+++|+...+||.--. ..+
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~ 152 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTS 152 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccc
Confidence 34568999999999999999999765 4589999999988872111 000
Q ss_pred CCeEEecccccccCCCC-CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCC-
Q 025254 52 DRLRLHLAKQFCQLPHL-PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPG- 129 (255)
Q Consensus 52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~- 129 (255)
+.+.+-..+.-++.+.. ++.+.-...++..++..+|-+.++.+|+++ .-+..+.++-+++++....|.+.+..-.+
T Consensus 153 d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI~k~ 230 (621)
T KOG2415|consen 153 DKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGISKD 230 (621)
T ss_pred cceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeeccccccCC
Confidence 01111111111111111 111111122456789999999999999886 55555666666654333334443321000
Q ss_pred -------ceeeEEEeeCEEEEeecCCC
Q 025254 130 -------REIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 130 -------~~~~~~i~~d~vViAtG~~s 149 (255)
..... ++++.-|.|-|+..
T Consensus 231 G~pKd~FerGme-~hak~TifAEGc~G 256 (621)
T KOG2415|consen 231 GAPKDTFERGME-FHAKVTIFAEGCHG 256 (621)
T ss_pred CCccccccccce-ecceeEEEeccccc
Confidence 01256 88999999999753
No 222
>PLN02815 L-aspartate oxidase
Probab=98.77 E-value=2.1e-07 Score=83.68 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.+||+|||+|.+|+++|..+++.| +|+|+|+....++
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 579999999999999999999999 9999999886554
No 223
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.77 E-value=1.2e-07 Score=83.48 Aligned_cols=64 Identities=14% Similarity=0.304 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcC-CCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 81 AQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 81 ~~~~~~l~~~~~~~~-l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
..+.+.+.+.+++.+ +.+ +++++|+++...+ ++.|.+.+.+..++ +..+ +++++||+|+|.++.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i--~~~teV~~I~~~~-dg~~~v~~~~~~~G--~~~~-i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFEL--QLGHEVRDIKRND-DGSWTVTVKDLKTG--EKRT-VRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCeEE--EeCCEEEEEEECC-CCCEEEEEEEcCCC--ceEE-EEcCEEEECCCcchH
Confidence 455666666666665 555 9999999998865 24577776542222 1147 899999999998863
No 224
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=1.8e-07 Score=84.21 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA 43 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g 43 (255)
.+||+|||||.+|++||..+++.+ .+|+|+||....+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 479999999999999999999874 7999999987544
No 225
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=2.7e-07 Score=83.18 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
..+||+|||+|.+|+++|..+++. .+|+|+||....+
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~ 40 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTR 40 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 357999999999999999999976 8999999986444
No 226
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.76 E-value=1.9e-07 Score=81.70 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=76.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. . ..++.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~-~-d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG-F-DDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc-c-CHHHHHH
Confidence 5789999999999999999999999999999876431 00 0 1356667
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.+++.++.+ +.+++|+++...+ +...+.+.++ .+ +.+|.||+|+| ..|+.
T Consensus 213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~viva~G--~~pn~ 265 (446)
T TIGR01424 213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG-------EE-IVADVVLFATG--RSPNT 265 (446)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC-------cE-eecCEEEEeeC--CCcCC
Confidence 777777778776 9999999998654 4455665442 67 89999999999 55544
No 227
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=2.3e-07 Score=83.61 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=34.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCC---CCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g---~~v~lie~~~~~g~ 44 (255)
..+||+|||+|.+|++||..+++.| .+|+|+||....++
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 4589999999999999999999998 89999999875544
No 228
>PRK12839 hypothetical protein; Provisional
Probab=98.75 E-value=1.8e-07 Score=83.93 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=38.3
Q ss_pred Ccc-ccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 1 MKE-QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 1 M~~-~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
|++ ++..+||+|||+|.+|+++|..+++.|.+|+|+|+...+||
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 543 34578999999999999999999999999999999887665
No 229
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.75 E-value=1.2e-07 Score=82.09 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=31.3
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
||+|||||.+|+++|.+|++.|.+|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 899999999999999999999999999999753
No 230
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.75 E-value=1.1e-07 Score=80.62 Aligned_cols=132 Identities=17% Similarity=0.310 Sum_probs=90.2
Q ss_pred CeEEEECCCHHHHHHHHHHhhC-------------CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~-------------g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (255)
.+|+|+|||+.|+.+|.+|... ..+|+|+|+.+.+- +.+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------p~~------ 207 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------PMF------ 207 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc----------------------cCC------
Confidence 4799999999999999999753 13899999988642 111
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
...+.++..+.+++.|+++ ++++.|++++.+. |++.++. .. +.++.+|+|+|....|..-
T Consensus 208 -----~~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~------~~-I~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 208 -----PPKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE------EE-IPADTVVWAAGVRASPLLK 267 (405)
T ss_pred -----CHHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC------ee-EecCEEEEcCCCcCChhhh
Confidence 1477889999999999887 9999999998765 6666541 37 9999999999976555443
Q ss_pred CCCCccccccCCCCCCcEEecccCCCCCCCCCCeEEEEcCC
Q 025254 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195 (255)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g 195 (255)
.+.|.+.- +.|++........ . ....|.++|--
T Consensus 268 ~l~~~e~d-----r~Grl~V~~~L~~-~--~~~~IFa~GD~ 300 (405)
T COG1252 268 DLSGLETD-----RRGRLVVNPTLQV-P--GHPDIFAAGDC 300 (405)
T ss_pred hcChhhhc-----cCCCEEeCCCccc-C--CCCCeEEEecc
Confidence 32122211 0344544443332 1 12457777743
No 231
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.74 E-value=8.1e-08 Score=82.30 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=34.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
.++||+|||||.+|+++|++|++.|.+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 46899999999999999999999999999999987443
No 232
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.73 E-value=2.7e-07 Score=78.48 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 80 RAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 80 ~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
-..+.+.+.+.+.+. ++.+ +++++|+++++.+ ++.|.|.+.+..++ +..+ ++++.|++..|+.+
T Consensus 180 FG~LTr~l~~~l~~~~~~~~--~~~~eV~~i~r~~-dg~W~v~~~~~~~~--~~~~-v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFEL--HLNHEVTDIKRNG-DGRWEVKVKDLKTG--EKRE-VRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEE--EecCEeCeeEECC-CCCEEEEEEecCCC--CeEE-EECCEEEECCchHh
Confidence 345555555555554 6655 9999999999987 36699998775444 4478 99999999999865
No 233
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.73 E-value=2.7e-07 Score=83.14 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=33.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g~ 44 (255)
..+||+|||+|.+|++||..+++.+ .+|+|+||....++
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 3579999999999999999999874 79999999875444
No 234
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.73 E-value=3.8e-07 Score=82.07 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g~ 44 (255)
.+||+|||+|.+|++||..+++. |.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999987 579999999875554
No 235
>PLN02507 glutathione reductase
Probab=98.73 E-value=3e-07 Score=81.38 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+++++|||+|+.|+.+|..|.+.|.+|+|+++.+.+- +. . ..++...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~-~-d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG-F-DDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc-c-CHHHHHH
Confidence 5799999999999999999999999999999876321 00 0 1356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++|+++...+ +...+...++ .+ +.+|.|++|+| .+|+..
T Consensus 250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG-------EE-FVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC-------cE-EEcCEEEEeec--CCCCCC
Confidence 777778888776 9999999998654 4555655432 67 99999999999 555443
No 236
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.73 E-value=3.9e-07 Score=82.32 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=30.6
Q ss_pred EEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC
Q 025254 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (255)
Q Consensus 10 vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~ 42 (255)
|+|||+|.+|++||..+++.|.+|+|+||...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999998733
No 237
>PRK07846 mycothione reductase; Reviewed
Probab=98.73 E-value=6.4e-07 Score=78.41 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=72.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||||+.|+.+|..|++.|.+|+++++.+.+.. . .+ .++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~-~d-~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-------------------------------H-LD-DDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------------------c-cC-HHHHHH
Confidence 57999999999999999999999999999999764310 0 01 244555
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.. +.++. ++.++++++++..+ +...+.+.++ .. +.+|.|++|+| .+|+..
T Consensus 213 l~~l~-~~~v~--i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 265 (451)
T PRK07846 213 FTELA-SKRWD--VRLGRNVVGVSQDG--SGVTLRLDDG-------ST-VEADVLLVATG--RVPNGD 265 (451)
T ss_pred HHHHH-hcCeE--EEeCCEEEEEEEcC--CEEEEEECCC-------cE-eecCEEEEEEC--CccCcc
Confidence 55433 34544 48999999998654 4555655432 67 99999999999 555544
No 238
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.72 E-value=5.7e-07 Score=81.02 Aligned_cols=39 Identities=21% Similarity=0.507 Sum_probs=36.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
...||+|||+|.+|+++|..+++.|.+|+|+|+....+|
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 368999999999999999999999999999999987665
No 239
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.72 E-value=1.6e-07 Score=78.33 Aligned_cols=37 Identities=38% Similarity=0.490 Sum_probs=33.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
..+|+|||||.+|+++|..|.++|++|+|+|+...+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 3589999999999999999999999999999977554
No 240
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.71 E-value=4.5e-07 Score=82.64 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~ 42 (255)
..+||+|||+|.+|+.+|..+++.|.+|+|+|+....
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 3589999999999999999999999999999997643
No 241
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.71 E-value=4.1e-07 Score=79.64 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=77.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||||+.|+.+|..|++.|.+|+++++.+.+.. . . ..++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-------------------------------~-~-d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-------------------------------S-F-DSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-------------------------------c-c-CHHHHHH
Confidence 57999999999999999999999999999998764310 0 0 1256677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.++..++.+ +.+++|+++.... .+...+.+.++ ... +.+|.|++|+| ..|+..
T Consensus 213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g------~~~-i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG------KSI-DDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC------cEE-EEcCEEEEeeC--CCcCcc
Confidence 777778888776 9999999998654 13345555432 156 89999999999 555543
No 242
>PRK14727 putative mercuric reductase; Provisional
Probab=98.70 E-value=1e-06 Score=77.75 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=72.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||+|+.|+.+|..|.+.|.+|+++++...+. ....++.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------------------~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------------------REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------------------cchHHHHHH
Confidence 5799999999999999999999999999998743110 001356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+.+.+++.++.+ +.+++|+++...+ +.+.+...+ .+ +.+|.||+|+|.
T Consensus 234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~--------g~-i~aD~VlvA~G~ 281 (479)
T PRK14727 234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH--------GE-LRAEKLLISTGR 281 (479)
T ss_pred HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC--------Ce-EEeCEEEEccCC
Confidence 777788888776 8899999998755 455555433 56 889999999994
No 243
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.70 E-value=3.7e-07 Score=80.29 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=77.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . . ..++.+.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~-~-d~~~~~~ 223 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------G-E-DADAAEV 223 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------C-C-CHHHHHH
Confidence 46899999999999999999999999999998764310 0 0 1255677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.++++++++..+ +.+.+.+.++ .+ +.+|.|++|+| .+|+..
T Consensus 224 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG-------RT-VEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC-------cE-EEecEEEEeec--CCcCCC
Confidence 777788888776 8999999998655 4555665443 67 89999999999 555543
No 244
>PRK14694 putative mercuric reductase; Provisional
Probab=98.70 E-value=3.3e-07 Score=80.65 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=74.1
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||+|+.|+.+|..|.+.|.+|+++++...++ . ...++...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~--------------------------------~--~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS--------------------------------Q--EDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC--------------------------------C--CCHHHHHH
Confidence 5799999999999999999999999999998743211 0 01356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.+++.++.+ +.++++.+++..+ +.+.+.+.+ .+ +.+|.||+|+| ..|+.
T Consensus 224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~ 275 (468)
T PRK14694 224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA--------GT-LRAEQLLVATG--RTPNT 275 (468)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC--------CE-EEeCEEEEccC--CCCCc
Confidence 777788888776 8999999998654 444454432 56 89999999999 44544
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.70 E-value=3.3e-07 Score=80.14 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+... . . ..++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------~-~-~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------S-F-DKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------h-c-CHHHHHH
Confidence 579999999999999999999999999999886632100 0 0 1367778
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+.+.+++.++.+ +.+++|+++...+ ....+...+ .+ +.+|.||+|+|.
T Consensus 197 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~d~vi~a~G~ 244 (444)
T PRK09564 197 MEEELRENGVEL--HLNEFVKSLIGED--KVEGVVTDK--------GE-YEADVVIVATGV 244 (444)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEecCC--cEEEEEeCC--------CE-EEcCEEEECcCC
Confidence 888888888766 8999999996432 333344432 56 899999999994
No 246
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.69 E-value=1.1e-06 Score=77.17 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=74.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+... . ..++.+
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------------------~-d~~~~~ 214 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL--------------------------------E-DPEVSK 214 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc--------------------------------h-hHHHHH
Confidence 3579999999999999999999999999999997643200 0 125566
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
.+.+.+++. +.+ ++++++.++...+. ....+...++ +..+ +.+|.|++|+| ..|+..
T Consensus 215 ~~~~~l~~~-I~i--~~~~~v~~i~~~~~-~~v~~~~~~~-----~~~~-i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 215 QAQKILSKE-FKI--KLGAKVTSVEKSGD-EKVEELEKGG-----KTET-IEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHHHhhc-cEE--EcCCEEEEEEEcCC-ceEEEEEcCC-----ceEE-EEeCEEEEccC--CccCCC
Confidence 666666665 555 89999999986541 2333332222 2267 89999999999 556554
No 247
>PTZ00367 squalene epoxidase; Provisional
Probab=98.69 E-value=2.3e-07 Score=82.95 Aligned_cols=34 Identities=35% Similarity=0.472 Sum_probs=32.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+||+|||||++|+++|..|++.|.+|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5799999999999999999999999999999975
No 248
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.69 E-value=4.1e-07 Score=79.50 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=75.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~~--~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PRE--DRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CCc--CHHHHHH
Confidence 5699999999999999999999999999999976431 000 1356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.+++.++.+ +++++|+++...+ +.+.+...+ .. +.+|.|++|+| .+|+.
T Consensus 205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~~D~vl~a~G--~~pn~ 256 (441)
T PRK08010 205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH--------AQ-LAVDALLIASG--RQPAT 256 (441)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC--------Ce-EEeCEEEEeec--CCcCC
Confidence 777788888776 8999999998754 455554433 45 88999999999 44543
No 249
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.69 E-value=1.4e-07 Score=77.86 Aligned_cols=136 Identities=23% Similarity=0.197 Sum_probs=76.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC-----------CCCccccc------CCCCC--------eE--Eec
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-----------CYASIWKK------YSYDR--------LR--LHL 58 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~-----------~~g~~~~~------~~~~~--------~~--~~~ 58 (255)
...||+|||||.+|.++|+.|++.|.+|.+|||+- .+||...- .+... .. .+.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~g 123 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDG 123 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCC
Confidence 45899999999999999999999999999999965 12221000 00000 00 000
Q ss_pred ccccccCCCCCCCCC--CCCCCCHHHHHHHHHHHHHh-cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEE
Q 025254 59 AKQFCQLPHLPFPSS--YPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (255)
Q Consensus 59 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (255)
..--..++...++.. -..|.++ .+.+.+++.+.. .++. +.+..|.++-.+++ -...|++.+..+ ++.+
T Consensus 124 k~v~~pyP~~~f~~d~~GrsFhnG-RFvq~lR~ka~slpNV~---~eeGtV~sLlee~g-vvkGV~yk~k~g---ee~~- 194 (509)
T KOG1298|consen 124 KEVDLPYPLKNFPSDPSGRSFHNG-RFVQRLRKKAASLPNVR---LEEGTVKSLLEEEG-VVKGVTYKNKEG---EEVE- 194 (509)
T ss_pred ceeeccCCCcCCCCCcccceeecc-HHHHHHHHHHhcCCCeE---EeeeeHHHHHhccC-eEEeEEEecCCC---ceEE-
Confidence 001111222222221 1223333 455555555444 3444 56667777766551 223345554433 4478
Q ss_pred EeeCEEEEeecCCCC
Q 025254 136 YSGRFLVVASGETTN 150 (255)
Q Consensus 136 i~~d~vViAtG~~s~ 150 (255)
..|..-|+|+|++|.
T Consensus 195 ~~ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 195 AFAPLTVVCDGCFSN 209 (509)
T ss_pred EecceEEEecchhHH
Confidence 899999999999874
No 250
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.68 E-value=5.3e-07 Score=79.37 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=75.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||||+.|+.+|..|.+.|.+|+++|+.+.+.. . .+ .++.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-------------------------------~-~d-~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-------------------------------A-AD-KDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-------------------------------c-CC-HHHHHH
Confidence 57999999999999999999999999999999874310 0 01 255566
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++. +.+ +.+++|+++...+ +...+.+.+... +..+ +.+|.||+|+| ..|+..
T Consensus 221 ~~~~l~~~-v~i--~~~~~v~~i~~~~--~~~~v~~~~~~~---~~~~-i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-FNI--MLETKVTAVEAKE--DGIYVTMEGKKA---PAEP-QRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-eEE--EcCCEEEEEEEcC--CEEEEEEEeCCC---cceE-EEeCEEEEeec--ccccCC
Confidence 66666554 444 8999999998665 455555543211 1267 89999999999 555543
No 251
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.68 E-value=8.7e-08 Score=88.92 Aligned_cols=119 Identities=14% Similarity=0.252 Sum_probs=72.0
Q ss_pred CeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCC---C-c-ccccCCCCCeEEecc---cc----ccc-------CC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---A-S-IWKKYSYDRLRLHLA---KQ----FCQ-------LP 66 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~---g-~-~~~~~~~~~~~~~~~---~~----~~~-------~~ 66 (255)
++|+|||||++|+++|..|++. |++|+|+|+.+.. | | ....+....+....+ .. +.. +.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 3799999999999999999998 8999999998753 2 1 101111000000000 00 000 00
Q ss_pred CCCCCCCCCC--CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEe
Q 025254 67 HLPFPSSYPM--FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (255)
Q Consensus 67 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViA 144 (255)
.......-.. ...+.++.+.|.+.+.+.++.+ +++++|+++.. .. .++|.||.|
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i--~~g~~v~~i~~---------------------~~-~~~D~VVgA 136 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGVKL--VFETEVPDDQA---------------------LA-ADADLVIAS 136 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEE--EeCCccCchhh---------------------hh-cCCCEEEEc
Confidence 0000000011 2567899999999998888665 88877755421 23 578999999
Q ss_pred ecCCCC
Q 025254 145 SGETTN 150 (255)
Q Consensus 145 tG~~s~ 150 (255)
+|.+|.
T Consensus 137 DG~~S~ 142 (765)
T PRK08255 137 DGLNSR 142 (765)
T ss_pred CCCCHH
Confidence 998763
No 252
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.66 E-value=6.7e-07 Score=79.93 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+||+|||+|.+|+++|..+++. .+|+|+||....++
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 468999999999999999999886 89999999875554
No 253
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.66 E-value=1.5e-06 Score=76.15 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+... .+ .++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~--------------------------------~d-~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH--------------------------------LD-EDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc--------------------------------cC-HHHHHH
Confidence 579999999999999999999999999999987643100 01 244455
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+... .++. ++.+++|+++...+ +...+.+.++ .+ +.+|.|++|+| .+|+..
T Consensus 216 l~~~~~-~gI~--i~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 216 FTEIAK-KKWD--IRLGRNVTAVEQDG--DGVTLTLDDG-------ST-VTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHHHh-cCCE--EEeCCEEEEEEEcC--CeEEEEEcCC-------CE-EEcCEEEEeec--cCcCCC
Confidence 544333 3554 48999999998755 4455655442 57 89999999999 555543
No 254
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.66 E-value=2.9e-07 Score=74.42 Aligned_cols=139 Identities=17% Similarity=0.148 Sum_probs=82.5
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCC---C-------CCe-EEecccc---------------
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS---Y-------DRL-RLHLAKQ--------------- 61 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~---~-------~~~-~~~~~~~--------------- 61 (255)
-.++|||+|.+||+++..+...+-.|+++|+...+||...... . ... ..+.+..
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~ 89 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP 89 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence 3699999999999999999999888999999998887432200 0 000 0000000
Q ss_pred ---------------------------cccCCCCCCCC---CCCCCCCHHHHHHHHHHHHHh----cCCCCeeEeccEEE
Q 025254 62 ---------------------------FCQLPHLPFPS---SYPMFVSRAQFIEHLDHYVSH----FNIGPSIRYQRSVE 107 (255)
Q Consensus 62 ---------------------------~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~----~~l~~~~~~~~~v~ 107 (255)
+..+..+..+. .....++..++...|....++ ..-.+.+..+++|+
T Consensus 90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 00111111111 111234445555554444433 22223348899999
Q ss_pred EEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 108 SASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 108 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
.+..+. .....|.+-+.++ +... +.++.||+|+|+++..
T Consensus 170 ~il~n~-gkVsgVeymd~sg---ek~~-~~~~~VVlatGGf~ys 208 (477)
T KOG2404|consen 170 DILRNN-GKVSGVEYMDASG---EKSK-IIGDAVVLATGGFGYS 208 (477)
T ss_pred eeecCC-CeEEEEEEEcCCC---Cccc-eecCceEEecCCcCcC
Confidence 998655 3455666665433 3366 8899999999988653
No 255
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.65 E-value=5.8e-07 Score=79.82 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..||+|||+|.+|+++|..+++ |.+|+|+|+.+..++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999976 899999999885544
No 256
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.65 E-value=1.1e-06 Score=77.64 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC----CCCeEEEeccCCCCcc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASI 45 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~----g~~v~lie~~~~~g~~ 45 (255)
+++++|||||.+||++|..|.+. |.+|+|+|+.+.+||.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 57999999999999999999986 6799999999988884
No 257
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.64 E-value=7.5e-07 Score=78.60 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=75.1
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||||+.|+.+|..|++.|.+|+++++.. +. +. . ..++.+.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~~-~-d~~~~~~ 225 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------RG-F-DQDCANK 225 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------cc-c-CHHHHHH
Confidence 4689999999999999999999999999998742 10 00 0 1366677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.++..++.+ +.++.++++...+ +...+...++.. ..+ +.+|.|++|+| ..|+.
T Consensus 226 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~-i~~D~vl~a~G--~~pn~ 281 (484)
T TIGR01438 226 VGEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTN----GIE-EEYDTVLLAIG--RDACT 281 (484)
T ss_pred HHHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCc----ceE-EEeCEEEEEec--CCcCC
Confidence 778888888776 8999888887654 444555544311 157 89999999999 44544
No 258
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.64 E-value=3.7e-07 Score=79.65 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=73.1
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||||+.|+.+|..|++.|.+|+++++.+.+... . ..++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~--------------------------------~-d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL--------------------------------M-DADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh--------------------------------c-CHHHHHH
Confidence 479999999999999999999999999999987643210 0 1356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.+++.++.+ +.+++|++++. . .+.+.++ .. +.+|.|++|+| .+|+.
T Consensus 195 l~~~l~~~gI~i--~~~~~v~~i~~----~--~v~~~~g-------~~-~~~D~vl~a~G--~~pn~ 243 (438)
T PRK13512 195 ILDELDKREIPY--RLNEEIDAING----N--EVTFKSG-------KV-EHYDMIIEGVG--THPNS 243 (438)
T ss_pred HHHHHHhcCCEE--EECCeEEEEeC----C--EEEECCC-------CE-EEeCEEEECcC--CCcCh
Confidence 777788888776 89999999853 2 3555442 56 89999999999 44543
No 259
>PRK13748 putative mercuric reductase; Provisional
Probab=98.64 E-value=5.4e-07 Score=81.15 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=75.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+++++|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------------------------------~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF--------------------------------R--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc--------------------------------c--cCHHHHHH
Confidence 5799999999999999999999999999998753210 0 01356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+++++++...+ +.+.+...+ .. +.+|.|++|+| ..|+..
T Consensus 316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH--------GE-LRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC--------Ce-EEeCEEEEccC--CCcCCC
Confidence 777788888776 8999999998654 455554433 46 89999999999 555543
No 260
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.64 E-value=1.2e-06 Score=84.84 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.+.||+|||+|.+|++||..+++.|.+|+|+||.+..||
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 468999999999999999999999999999999987776
No 261
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.63 E-value=1.6e-06 Score=78.27 Aligned_cols=39 Identities=18% Similarity=0.564 Sum_probs=35.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+||+|||+|.+|+++|..+++.|.+|+|||+.+..||
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 468999999999999999999999999999999876665
No 262
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.63 E-value=2.1e-06 Score=75.67 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=75.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC---CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~---g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (255)
.+.+++|||||+.|+.+|..+... |.+|+|+++.+.+.. . . ..+
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-------------------------------~-~-d~~ 232 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-------------------------------G-F-DST 232 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-------------------------------c-c-CHH
Confidence 357999999999999999876544 899999998775310 0 0 136
Q ss_pred HHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 83 ~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.+.+.+++.++.+ +.+++++++...++ +...+.+.++ .. +.+|.|++|+| ..|+.
T Consensus 233 ~~~~l~~~L~~~GI~i--~~~~~v~~i~~~~~-~~~~v~~~~g-------~~-i~~D~vl~a~G--~~Pn~ 290 (486)
T TIGR01423 233 LRKELTKQLRANGINI--MTNENPAKVTLNAD-GSKHVTFESG-------KT-LDVDVVMMAIG--RVPRT 290 (486)
T ss_pred HHHHHHHHHHHcCCEE--EcCCEEEEEEEcCC-ceEEEEEcCC-------CE-EEcCEEEEeeC--CCcCc
Confidence 6777778888888776 99999999986541 3345555432 57 89999999999 55544
No 263
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.63 E-value=4.5e-07 Score=80.59 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=36.6
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
|..-...+||+|||+| +|+++|.++++.|.+|+|+|+.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4333347899999999 999999999999999999999886554
No 264
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.62 E-value=3.5e-07 Score=81.83 Aligned_cols=39 Identities=26% Similarity=0.553 Sum_probs=33.9
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+..+||+|||+|.+|++||..+. .|.+|+|+||.+..++
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 34689999999999999999996 4899999999886554
No 265
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.62 E-value=9.3e-07 Score=82.60 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=76.9
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
..+++|||||+.|+.+|..|.+.|.+|+|+++.+.+.. ... ..+....
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------~~l-d~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------EQL-DQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------hhc-CHHHHHH
Confidence 56899999999999999999999999999998764310 001 1255677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
+.+.+++.++.+ +.+..++++...+......+.+.++ .. +.+|.||+|+| -+|+
T Consensus 193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG-------~~-i~~D~Vv~A~G--~rPn 246 (847)
T PRK14989 193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG-------SE-LEVDFIVFSTG--IRPQ 246 (847)
T ss_pred HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC-------CE-EEcCEEEECCC--cccC
Confidence 888888888776 9999999997643223445555553 67 99999999999 4454
No 266
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.62 E-value=6.3e-07 Score=77.97 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=71.9
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. +. .+ .++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~-~~-~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL-FD-EEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc-cC-HHHHHH
Confidence 57999999999999999999999999999998764310 00 01 356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+.+.+++.++++ +.+.+|.++...+ .. +...++ .+ +.+|.||+|+|.
T Consensus 185 ~~~~l~~~gV~v--~~~~~v~~i~~~~---~~-v~~~~g-------~~-i~~D~vi~a~G~ 231 (427)
T TIGR03385 185 VEEELKKHEINL--RLNEEVDSIEGEE---RV-KVFTSG-------GV-YQADMVILATGI 231 (427)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEecCC---CE-EEEcCC-------CE-EEeCEEEECCCc
Confidence 777788888776 8899999997543 22 334332 67 899999999994
No 267
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.62 E-value=6.3e-07 Score=80.36 Aligned_cols=38 Identities=24% Similarity=0.493 Sum_probs=35.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+||||||+| +|+++|..+++.|.+|+|+||.+.+||
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 36899999999 899999999999999999999987776
No 268
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.62 E-value=5.9e-08 Score=85.56 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=38.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~ 47 (255)
.+|++|||||+.||.+|..|++.|++|+|+||+..+||.-+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence 58999999999999999999999999999999999998433
No 269
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.61 E-value=1.9e-06 Score=77.43 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=36.3
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+..+||+|||+|++|+++|..+++.|.+|+|||+.+..||
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 4478999999999999999999999999999999886654
No 270
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.60 E-value=1.3e-06 Score=78.44 Aligned_cols=39 Identities=36% Similarity=0.510 Sum_probs=35.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC--CCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~--~~g~ 44 (255)
..+||+|||+|.+|+++|..+++.|.+|+|+|+.+ ..||
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 46899999999999999999999999999999988 5555
No 271
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.60 E-value=1e-06 Score=78.13 Aligned_cols=100 Identities=17% Similarity=0.031 Sum_probs=74.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+++|||||+.|+.+|..|++.|.+|+++++...+. . . ..++.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~--------------------------------~-~-d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR--------------------------------G-F-DRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc--------------------------------c-C-CHHHHHH
Confidence 4699999999999999999999999999998632110 0 0 1256677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.++.+.++...+ +...+.+.++ .+ +.+|.|++|+| .+|+..
T Consensus 228 l~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 228 VVEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG-------TT-ELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEEeeC--CCCCcc
Confidence 777788888766 8999998887654 3445555443 57 89999999999 555543
No 272
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.59 E-value=1.4e-07 Score=80.13 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=63.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
..+++|||||++|+.+|+.|++.|++|.++|+++.+||.... +... |+... .+.=-+...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak--~~k~----------FP~~d--------cs~C~LaP~ 183 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK--LNKT----------FPTND--------CSICILAPK 183 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh--hhcc----------CCCcc--------cchhhccch
Confidence 479999999999999999999999999999999999985221 0000 01000 001122334
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcc
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~ 124 (255)
+.+...+.++.. .+.++|.++.-.- +.|+|.+..
T Consensus 184 m~~v~~hp~i~l--~TyaeV~ev~G~v--GnF~vki~k 217 (622)
T COG1148 184 MVEVSNHPNIEL--ITYAEVEEVSGSV--GNFTVKIEK 217 (622)
T ss_pred hhhhccCCceee--eeeeeeeeecccc--cceEEEEec
Confidence 445555556665 8888888887655 677776654
No 273
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.59 E-value=6.8e-07 Score=79.43 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
...||+|||+|.+|+++|..++ +.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4689999999999999999997 569999999875
No 274
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=73.32 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=87.6
Q ss_pred eEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+|||||++|.+||.+|+.+ ..+|.++-..+.+-..- +-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvt--------------------------------n~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVT--------------------------------NYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHh--------------------------------hHHHHHHH
Confidence 368999999999999999987 45788887765332110 01122222
Q ss_pred HHHHH------HhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCCcc
Q 025254 87 LDHYV------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC 160 (255)
Q Consensus 87 l~~~~------~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g~~ 160 (255)
+.++- ..++-...-..+ +|..++. ....+.+.++ .. +.|++|.+|+| ++|.+-- .+.
T Consensus 49 lekfdv~eq~~~elg~~f~~~~~-~v~~~~s----~ehci~t~~g-------~~-~ky~kKOG~tg--~kPklq~-E~~- 111 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFRRFLN-DVVTWDS----SEHCIHTQNG-------EK-LKYFKLCLCTG--YKPKLQV-EGI- 111 (334)
T ss_pred HHhcCccccchhhhcccHHHHHH-hhhhhcc----ccceEEecCC-------ce-eeEEEEEEecC--CCcceee-cCC-
Confidence 22210 000000000011 1212211 2334556554 66 89999999999 6665422 221
Q ss_pred ccccCCCCCCcEEecccCCCC-----CCCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 161 SFCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
...++...+.... ....+|.|+++|.|-++.|++.++. +.+|+|....+
T Consensus 112 --------n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~ 165 (334)
T KOG2755|consen 112 --------NPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--ILNVTWKIKDE 165 (334)
T ss_pred --------CceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cceeEEEecch
Confidence 2234444444332 2236899999999999999998874 46777777766
No 275
>PTZ00058 glutathione reductase; Provisional
Probab=98.57 E-value=1.4e-06 Score=77.90 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=76.1
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. .+ .++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~-~d-~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RK-FD-ETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------cc-CC-HHHHHH
Confidence 6799999999999999999999999999999876431 00 11 356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.+++.++.+ +.+.+|.++...+. +...+...++ ..+ +.+|.|++|+| ..|+..
T Consensus 284 l~~~L~~~GV~i--~~~~~V~~I~~~~~-~~v~v~~~~~------~~~-i~aD~VlvA~G--r~Pn~~ 339 (561)
T PTZ00058 284 LENDMKKNNINI--ITHANVEEIEKVKE-KNLTIYLSDG------RKY-EHFDYVIYCVG--RSPNTE 339 (561)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEecCC-CcEEEEECCC------CEE-EECCEEEECcC--CCCCcc
Confidence 777778778776 99999999986541 2344443321 157 89999999999 455543
No 276
>PRK07208 hypothetical protein; Provisional
Probab=98.55 E-value=1.4e-07 Score=83.27 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=37.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~ 46 (255)
..+||+|||||++||++|+.|.+.|.+|+|+|+.+.+||..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 45799999999999999999999999999999999999843
No 277
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=1.1e-07 Score=83.43 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=37.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.+++|+|||||++||+||++|.+.|.+|+|+|..+++||
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 467999999999999999999999999999999999998
No 278
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.53 E-value=8.2e-07 Score=82.72 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=75.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+.. ...+ ......
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~~ld-~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------KQLD-QTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------hhcC-HHHHHH
Confidence 47899999999999999999999999999998764210 0001 245567
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.+++.++.+ +++..++++...+ ....|.+.++ .. +.+|.||+|+| .+|+.
T Consensus 188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG-------~~-i~~D~Vi~a~G--~~Pn~ 240 (785)
T TIGR02374 188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG-------SS-LEADLIVMAAG--IRPND 240 (785)
T ss_pred HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC-------CE-EEcCEEEECCC--CCcCc
Confidence 777788888776 9999998887543 3445666553 67 99999999999 44543
No 279
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=3.7e-07 Score=78.79 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC----------CCcccccCCCCCeEEecccccc---------cCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC----------YASIWKKYSYDRLRLHLAKQFC---------QLP 66 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~----------~g~~~~~~~~~~~~~~~~~~~~---------~~~ 66 (255)
..+||+|||||.+|+.||...++.|.++.++-.+.+ +||.-...... ..+.....+ .+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvr--EIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVR--EIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEE--eehhccchHHHhhhhcCCchh
Confidence 358999999999999999999999999988866542 22211100000 001111111 111
Q ss_pred CCCCC-----CCCCCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCE
Q 025254 67 HLPFP-----SSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRF 140 (255)
Q Consensus 67 ~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~ 140 (255)
...-. .......++..+...+++.++.. ++. .+...|+++...+......|.+.++ .. +.|+.
T Consensus 81 ~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G-------~~-~~a~a 149 (621)
T COG0445 81 MLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADG-------PE-FHAKA 149 (621)
T ss_pred hccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCC-------Ce-eecCE
Confidence 11100 01123355667777777777755 444 6667888887755222455666665 77 99999
Q ss_pred EEEeecCC
Q 025254 141 LVVASGET 148 (255)
Q Consensus 141 vViAtG~~ 148 (255)
||++||.+
T Consensus 150 VVlTTGTF 157 (621)
T COG0445 150 VVLTTGTF 157 (621)
T ss_pred EEEeeccc
Confidence 99999964
No 280
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.52 E-value=4.2e-06 Score=75.14 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=35.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+||+|||+|.+|+++|..+++.|.+|+|||+....||
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 368999999999999999999999999999999876655
No 281
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.52 E-value=1.2e-06 Score=78.07 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=35.2
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCC
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g 43 (255)
...+||+|||||.+||.+|..+++.|.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 346899999999999999999999999999999987444
No 282
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.51 E-value=2.6e-06 Score=73.47 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
..+++|||+|+.|+.+|..|.+.|.+|+++|..+.+++... . .++.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~-------------------------------~-~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL-------------------------------D-PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh-------------------------------h-HHHHHH
Confidence 37999999999999999999999999999999987653210 0 477888
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEE-EEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+.+..+..++.. +.+..+.+++......... +...+. .. +++|.+++++|.
T Consensus 184 ~~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~-~~~d~~~~~~g~ 235 (415)
T COG0446 184 LAELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG-------EE-IKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC-------cE-EEeeEEEEeecc
Confidence 888899988665 8999999998765211111 233332 67 899999999994
No 283
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.51 E-value=2.4e-06 Score=77.56 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+.+|+|||||+.|+.+|..|.+.|.+|+++|+.+.+... .+ .++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~--------------------------------~d-~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL--------------------------------LD-ADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc--------------------------------CC-HHHHHH
Confidence 568999999999999999999999999999997753200 11 255666
Q ss_pred HHHHH-HhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCC--C------ceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSP--G------REIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 87 l~~~~-~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~--~------~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
+.+.. ++.++.+ +.+++|.++...+......+...+..++ + .+..+ +.+|.|++|+| .+|+..
T Consensus 359 l~~~ll~~~GV~I--~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvAtG--r~Pnt~ 430 (659)
T PTZ00153 359 FERVFLKSKPVRV--HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVATG--RKPNTN 430 (659)
T ss_pred HHHHHhhcCCcEE--EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEEEC--cccCCc
Confidence 66644 4567665 9999999998654222244543221100 0 01147 89999999999 556544
No 284
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.51 E-value=4.1e-06 Score=75.58 Aligned_cols=38 Identities=24% Similarity=0.542 Sum_probs=35.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.+||+|||+|.+|+++|..+++.|.+|+|+|+...+||
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 57999999999999999999999999999999887666
No 285
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.50 E-value=4e-06 Score=72.86 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=69.3
Q ss_pred CeEEEECCCHHHHHHHHHHhh--------------CCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~--------------~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (255)
.+++|||||+.|+.+|..|.. .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 489999999999999999875 367899999876431
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+.+ ...+.+.+.+.+++.++++ +.+++|+++... . |.+.++ .+ +.+|.+|+|+|.
T Consensus 224 -~~~--~~~~~~~~~~~L~~~gV~v--~~~~~v~~v~~~----~--v~~~~g-------~~-i~~d~vi~~~G~ 278 (424)
T PTZ00318 224 -GSF--DQALRKYGQRRLRRLGVDI--RTKTAVKEVLDK----E--VVLKDG-------EV-IPTGLVVWSTGV 278 (424)
T ss_pred -ccC--CHHHHHHHHHHHHHCCCEE--EeCCeEEEEeCC----E--EEECCC-------CE-EEccEEEEccCC
Confidence 000 1356778888888888776 889999988642 2 555543 67 899999999994
No 286
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.50 E-value=4.1e-06 Score=79.25 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
.+||+|||+|.+|+++|..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999999774
No 287
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.49 E-value=6e-07 Score=80.95 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.5
Q ss_pred eEEEECCCHHHHHHHHHHh----hCCCCeEEEeccCC
Q 025254 9 EVIMVGAGTSGLATAACLS----LQSIPYVILERENC 41 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~----~~g~~v~lie~~~~ 41 (255)
||+|||+|.+|++||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 288
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.49 E-value=1.4e-06 Score=74.45 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEE-EEEcccCCCCceeeEEEeeCEEEEeecCC-CC
Q 025254 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGET-TN 150 (255)
Q Consensus 80 ~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~i~~d~vViAtG~~-s~ 150 (255)
...+.+.|.+.+++.|..+ ..+.+|+++...+ +.++ +.+.++. ... +++|.+|+|+|+| |.
T Consensus 262 G~RL~~aL~~~~~~~Gg~i--l~g~~V~~i~~~~--~~v~~V~t~~g~-----~~~-l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVM--LPGDRVLRAEFEG--NRVTRIHTRNHR-----DIP-LRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHHCCCEE--EECcEEEEEEeeC--CeEEEEEecCCc-----cce-EECCEEEEccCCCcCH
Confidence 5677777888888888765 8888999998766 4443 4434321 157 9999999999988 64
No 289
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.48 E-value=6.2e-07 Score=76.95 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~ 42 (255)
.||+|||||++|+.+|..|++.|.+|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 38999999999999999999999999999986654
No 290
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.48 E-value=5.2e-07 Score=73.70 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=35.2
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
....+|+|||+|.+||++|..|+++ .+|+++|.+..+||
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence 3467999999999999999999876 89999999998887
No 291
>PLN02546 glutathione reductase
Probab=98.47 E-value=3.7e-06 Score=75.27 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=74.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+.+|+|||||+.|+.+|..|.+.+.+|+++++.+.+... . ..++..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~--------------------------------~-d~~~~~ 297 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG--------------------------------F-DEEVRD 297 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc--------------------------------c-CHHHHH
Confidence 3579999999999999999999999999999987643100 0 135667
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
++.+.+++.|+.+ +.+++++++...+ .+...+...++ .. ..+|.|++|+| ..|+.
T Consensus 298 ~l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g-------~~-~~~D~Viva~G--~~Pnt 352 (558)
T PLN02546 298 FVAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG-------TV-EGFSHVMFATG--RKPNT 352 (558)
T ss_pred HHHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe-------EE-EecCEEEEeec--cccCC
Confidence 7777788888776 9999999997643 23344443321 34 55899999999 44544
No 292
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.45 E-value=3.2e-06 Score=75.32 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=69.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++|+|||||+.|+.+|..|++.+.+|+++++.+.+. ....
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~---------------------------------------~~~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK---------------------------------------ADKV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC---------------------------------------hhHH
Confidence 5799999999999999999999999999998765321 0122
Q ss_pred HHHHHHh-cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~-~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.++. .++.+ ++++.++++...+ +....|.+.+..++ ++.+ +.+|.|++|+| ..|+.
T Consensus 393 l~~~l~~~~gV~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~~--~~~~-i~~D~vi~a~G--~~Pn~ 452 (515)
T TIGR03140 393 LQDKLKSLPNVDI--LTSAQTTEIVGDG-DKVTGIRYQDRNSG--EEKQ-LDLDGVFVQIG--LVPNT 452 (515)
T ss_pred HHHHHhcCCCCEE--EECCeeEEEEcCC-CEEEEEEEEECCCC--cEEE-EEcCEEEEEeC--CcCCc
Confidence 3344443 46665 9999999987643 12223555443222 3367 99999999999 55543
No 293
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.44 E-value=3.1e-07 Score=80.33 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=35.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCCcc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASI 45 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g~~ 45 (255)
++|+|||||++||+||+.|++.| ++|+|+|+.+.+||.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 47999999999999999999987 899999999999984
No 294
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.44 E-value=3.2e-06 Score=69.79 Aligned_cols=95 Identities=23% Similarity=0.243 Sum_probs=66.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++++|||+|++|+.+|..|++.+.+|+++++.+.+. . ...
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~----------------------------------~-----~~~ 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR----------------------------------A-----EKI 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC----------------------------------c-----CHH
Confidence 5799999999999999999999999999998865210 0 112
Q ss_pred HHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 87 l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+.+.+.+. ++.+ +.+++++++...+ ....+.+.+..++ +..+ +.+|.+|+|+|.
T Consensus 182 ~~~~l~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G~ 236 (300)
T TIGR01292 182 LLDRLRKNPNIEF--LWNSTVKEIVGDN--KVEGVKIKNTVTG--EEEE-LKVDGVFIAIGH 236 (300)
T ss_pred HHHHHHhCCCeEE--EeccEEEEEEccC--cEEEEEEEecCCC--ceEE-EEccEEEEeeCC
Confidence 33334444 6665 8889999987643 3333444332111 2367 899999999993
No 295
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.44 E-value=1.9e-07 Score=80.23 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~ 45 (255)
..+||+|||||..|--+|.-.+-+|.++.++|+++...|+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 3599999999999999999999999999999999966653
No 296
>PRK10262 thioredoxin reductase; Provisional
Probab=98.44 E-value=4.5e-06 Score=69.85 Aligned_cols=105 Identities=23% Similarity=0.274 Sum_probs=73.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++++|||+|..|+.+|..|++.+.+|+++++.+.+. .+ ..+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~----------------------------------~~-~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR----------------------------------AE-KILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC----------------------------------CC-HHHHHH
Confidence 5799999999999999999999999999999865321 00 134455
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
+.+.++..++.+ ..++.++++...+ .....|.+.+...++ +..+ +.+|.||+|+| ..|+.
T Consensus 191 ~~~~l~~~gV~i--~~~~~v~~v~~~~-~~~~~v~~~~~~~~~-~~~~-i~~D~vv~a~G--~~p~~ 250 (321)
T PRK10262 191 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG--HSPNT 250 (321)
T ss_pred HHhhccCCCeEE--EeCCEEEEEEcCC-ccEEEEEEEEcCCCC-eEEE-EECCEEEEEeC--CccCh
Confidence 666666667665 8899999997643 122234444321110 2367 99999999999 44443
No 297
>PLN02576 protoporphyrinogen oxidase
Probab=98.42 E-value=5.4e-07 Score=79.91 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=37.7
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhC-CCCeEEEeccCCCCcc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASI 45 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~-g~~v~lie~~~~~g~~ 45 (255)
...+||+|||||++||++|+.|.+. |.+|+|+|+.+.+||.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 3467999999999999999999999 9999999999999983
No 298
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.41 E-value=1.3e-06 Score=70.94 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
++||+|||||.+|++|+.+|.+.|.+++||.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4899999999999999999999999999999876
No 299
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.39 E-value=3.3e-06 Score=73.63 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCc-EEEEEcccCCCCceeeEEEeeCEEEEeecCCCC
Q 025254 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM-WNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (255)
Q Consensus 80 ~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~-~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~ 150 (255)
...+.+.|.+.+++.++++ +++++|+++...++.+. ..|...+. . .. +.++.||+|+|.++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g~v~gv~~~~~--~----~~-i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDGAHDGPLTTVG--T----HR-ITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCCeEEEEEEcCC--c----EE-EEcCEEEEcCCCccc
Confidence 4567778888888888776 99999999987521132 22333221 1 57 899999999997653
No 300
>PLN02676 polyamine oxidase
Probab=98.37 E-value=8.1e-07 Score=78.37 Aligned_cols=47 Identities=34% Similarity=0.478 Sum_probs=40.6
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCCCCcccccCCC
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSY 51 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~~g~~~~~~~~ 51 (255)
...+||+|||||++||++|..|++.|. +|+|+|+...+||.+....+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~ 71 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANF 71 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecC
Confidence 346899999999999999999999998 69999999999986554333
No 301
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.37 E-value=7.2e-07 Score=78.38 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=35.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC----CCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~----g~~v~lie~~~~~g~ 44 (255)
++||+|||||++||++|+.|.+. |++|+|+|+.+.+||
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 36999999999999999999998 999999999998887
No 302
>PLN02268 probable polyamine oxidase
Probab=98.36 E-value=6.4e-07 Score=78.13 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=35.8
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~ 45 (255)
.+|+|||||.+||++|+.|.+.|++|+|+|+.+.+||.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 47999999999999999999999999999999999983
No 303
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.35 E-value=9.2e-07 Score=78.38 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=35.7
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+||+|||||++||++|..|++.|++|+|+|++..+||
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 6999999999999999999999999999999998887
No 304
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.34 E-value=7.3e-06 Score=73.09 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=67.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++|+|||||..|+.+|..|+..+.+|+++++.+.+. . ...
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~----------------------------------~-----~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK----------------------------------A-----DQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc----------------------------------c-----cHH
Confidence 5799999999999999999999999999998876321 0 022
Q ss_pred HHHHHHh-cCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 87 l~~~~~~-~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
+.+.+.. .++.+ ++++.++++...+ .....+.+.+..++ ++.+ +.+|.|++|+|.
T Consensus 392 l~~~l~~~~gI~i--~~~~~v~~i~~~~-g~v~~v~~~~~~~g--~~~~-i~~D~v~~~~G~ 447 (517)
T PRK15317 392 LQDKLRSLPNVTI--ITNAQTTEVTGDG-DKVTGLTYKDRTTG--EEHH-LELEGVFVQIGL 447 (517)
T ss_pred HHHHHhcCCCcEE--EECcEEEEEEcCC-CcEEEEEEEECCCC--cEEE-EEcCEEEEeECC
Confidence 3333333 46655 9999999998653 12223555443222 3468 999999999994
No 305
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.31 E-value=9.2e-07 Score=58.09 Aligned_cols=39 Identities=33% Similarity=0.404 Sum_probs=34.9
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeecccc
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWRFEQ 227 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (255)
+++|||+|.+|+|+|..+.+.|.+|++++|++ +++|..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~ 39 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFD 39 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcC
Confidence 68999999999999999999999999999999 6665443
No 306
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.31 E-value=7.2e-06 Score=70.27 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=78.4
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc--ccccCCCCCeEEe-----------------------------
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--IWKKYSYDRLRLH----------------------------- 57 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~--~~~~~~~~~~~~~----------------------------- 57 (255)
||+|||+|.+||++|+.|.+. ++|+|+-|.+...+ .|...-.......
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999988 99999999874322 3332111000000
Q ss_pred -cccccccC--CCCCCCCC--------------------CCCCCCHHHHHHHHHHHHHh-cCCCCeeEeccEEEEEEEcC
Q 025254 58 -LAKQFCQL--PHLPFPSS--------------------YPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDE 113 (255)
Q Consensus 58 -~~~~~~~~--~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~v~~i~~~~ 113 (255)
.+..+-.+ -..+|... ... .+...+++.|.+.+.. .++.+ ..++.+.++..++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~v--~e~~~a~~li~~~ 164 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNITV--LEGAEALDLIIED 164 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcEE--EecchhhhhhhcC
Confidence 00000000 00011111 112 5567888888887775 56655 8887888877765
Q ss_pred CCCcE-EEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 114 ATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 114 ~~~~~-~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
.. .. .|.+.+... +... +.++.||+|||+.+
T Consensus 165 ~~-~~~Gv~~~~~~~---~~~~-~~a~~vVLATGG~g 196 (518)
T COG0029 165 GI-GVAGVLVLNRNG---ELGT-FRAKAVVLATGGLG 196 (518)
T ss_pred Cc-eEeEEEEecCCC---eEEE-EecCeEEEecCCCc
Confidence 21 22 344433211 2367 89999999999865
No 307
>PRK07233 hypothetical protein; Provisional
Probab=98.31 E-value=7.5e-07 Score=77.50 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=34.8
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+|+|||||++||++|..|++.|++|+|+|+.+.+||
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 689999999999999999999999999999999988
No 308
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=8.1e-07 Score=76.50 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=38.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc---cccc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS---IWKK 48 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~---~~~~ 48 (255)
++|+|+|||.+||+||++|++.|++|+|+|+++.+|| .|+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence 4899999999999999999999999999999999998 5654
No 309
>PLN02568 polyamine oxidase
Probab=98.28 E-value=1.4e-06 Score=77.60 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=37.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCC-----CCeEEEeccCCCCcccc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWK 47 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g-----~~v~lie~~~~~g~~~~ 47 (255)
..||+|||||++||++|..|.+.| ++|+|+|+...+||.+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 579999999999999999999887 89999999999998543
No 310
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.28 E-value=1.4e-06 Score=77.18 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=35.5
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+||+|||||.+|+++|..|++.|++|+|+|++..+||
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 5899999999999999999999999999999998887
No 311
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.27 E-value=1.2e-06 Score=74.44 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=35.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+||+|||||++|+++|..|++.|.+|+|+|+...+||
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 6999999999999999999999999999999988887
No 312
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.27 E-value=1.3e-06 Score=77.69 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=33.8
Q ss_pred EEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 10 vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
|+|||||++||++|..|++.|++|+|+|++..+||
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG 35 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcC
Confidence 68999999999999999999999999999999988
No 313
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.25 E-value=3.4e-06 Score=70.61 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCCcccccCCCCCeEEecccccccCC------CCCCCCCC---
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLP------HLPFPSSY--- 74 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--- 74 (255)
.+...+|||+|.+..+++.....+ +.+|.+|...+.++= ++..+..+++-+. .+.|..|.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY---------mRPPLSKELW~~~dpn~~k~lrfkqwsGke 247 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY---------MRPPLSKELWWYGDPNSAKKLRFKQWSGKE 247 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc---------cCCCcchhceecCCCChhhheeecccCCcc
Confidence 456889999999998888877655 457777766654331 1111111111111 11111110
Q ss_pred --------CCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 025254 75 --------PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG 146 (255)
Q Consensus 75 --------~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG 146 (255)
.-|++..++- .+..-|+.+ ..+..|+.+...+ .. |.++++ .+ |.||.++||||
T Consensus 248 Rsiffepd~FfvspeDLp-----~~~nGGvAv--l~G~kvvkid~~d--~~--V~LnDG-------~~-I~YdkcLIATG 308 (659)
T KOG1346|consen 248 RSIFFEPDGFFVSPEDLP-----KAVNGGVAV--LRGRKVVKIDEED--KK--VILNDG-------TT-IGYDKCLIATG 308 (659)
T ss_pred ceeEecCCcceeChhHCc-----ccccCceEE--EeccceEEeeccc--Ce--EEecCC-------cE-eehhheeeecC
Confidence 0112222111 122234444 7777888887654 33 677766 77 99999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCCcEEecccCCCC---CCCCCCeEEEEcCCcCHHHHHHHHhhh----cCeEEEEEec
Q 025254 147 ETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNG---KPYGGKNVLVVGSGNSGMEIALDLANH----AAKTSLVVRS 218 (255)
Q Consensus 147 ~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~ViG~g~~~~e~a~~l~~~----g~~v~~~~r~ 218 (255)
.+|....+ ++...+.....--.++....... ....-++|.|||+|..|-|+++.|.+. |.+|+=+...
T Consensus 309 --~~Pk~l~~--~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~E 383 (659)
T KOG1346|consen 309 --VRPKKLQV--FEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEE 383 (659)
T ss_pred --cCcccchh--hhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecc
Confidence 55544332 11110000001112332221111 111247899999999999999999875 5566655443
No 314
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.24 E-value=1.7e-06 Score=74.46 Aligned_cols=41 Identities=17% Similarity=0.442 Sum_probs=36.9
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCCCCccccc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKK 48 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~~g~~~~~ 48 (255)
++|+|||||++||++|+.|.+.+ .+++|+|+.+.+||..+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 47999999999999999999998 899999999999985443
No 315
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.23 E-value=2.5e-05 Score=62.55 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCC------CCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g------~~v~lie~~~~~g~ 44 (255)
..++|+|+|||..|+++|+.|++++ ..|+|+|.....++
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 3589999999999999999999986 68999999875443
No 316
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.23 E-value=2.1e-06 Score=73.01 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=36.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCCCCccc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIW 46 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~~g~~~ 46 (255)
...+|+|||||.||++||..|.++|. +++|+|..+++||.-
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 45699999999999999999997765 899999999999843
No 317
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.20 E-value=2.3e-06 Score=75.31 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=34.0
Q ss_pred CeEEEECCCHHHHHHHHHHhhC------CCCeEEEeccCCCCc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYAS 44 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~------g~~v~lie~~~~~g~ 44 (255)
++|+|||||++||++|+.|.+. +.+|+|+|+.+.+||
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 4799999999999999999986 379999999999988
No 318
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.19 E-value=1.9e-05 Score=67.33 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=82.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
...|+++|+|..|+.+|..|...+.+|++|++...+- +. .-...+.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~--------~~------------------------lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL--------PR------------------------LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch--------hh------------------------hhhHHHHHH
Confidence 5689999999999999999999999999999876321 00 011356677
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~ 157 (255)
...+.++.++++ ..++.+.+++.+++.....|.+.++ .+ +.+|.||+.+| .+|+.....
T Consensus 261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg-------~~-l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG-------KT-LEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC-------CE-eccCeEEEeec--ccccccccc
Confidence 777888888877 9999999999887545556666665 77 99999999999 666665443
No 319
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=2.3e-06 Score=69.29 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=36.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~ 45 (255)
.+|++|||+|.+|+.+|..|+++|.+|.|+|+.+++||.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 379999999999999999999999999999999999984
No 320
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.17 E-value=2.3e-06 Score=74.35 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=39.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~ 47 (255)
+.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 469999999999999999999999999999999999999655
No 321
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.17 E-value=1.4e-05 Score=64.82 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=31.7
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhC-CC-CeEEEeccCC
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC 41 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~-g~-~v~lie~~~~ 41 (255)
+.+++|+|||||.+|+..|..+.+. +. +|.|+|..++
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 3578999999999999999999876 44 8999999763
No 322
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.15 E-value=5.3e-05 Score=64.54 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhh----CC--CCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCH
Q 025254 7 GVEVIMVGAGTSGLATAACLSL----QS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~----~g--~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
.++++|||+|+.|+.+|..|.+ .| .+|+++.. +.+. +. -.
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l-------------------------------~~--~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLL-------------------------------PG--FP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cccc-------------------------------cc--CC
Confidence 4699999999999999999975 34 47888832 2110 00 01
Q ss_pred HHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
..+...+.+.+++.++++ +.+++++++.. + .+.+.++ .+ +.+|.||+|+|.
T Consensus 191 ~~~~~~~~~~l~~~gV~v--~~~~~v~~i~~----~--~v~~~~g-------~~-i~~D~vi~a~G~ 241 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEV--HEGAPVTRGPD----G--ALILADG-------RT-LPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHHCCCEE--EeCCeeEEEcC----C--eEEeCCC-------CE-EecCEEEEccCC
Confidence 245667777788888776 88989988742 2 3555443 67 999999999994
No 323
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.14 E-value=2.3e-05 Score=66.53 Aligned_cols=58 Identities=19% Similarity=0.413 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
..+..-+.++++..|+++ +++++|.++...+ +....|.+.++ .+ +.+|+||+|.|+.+
T Consensus 173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~-~~~~~v~~~~g-------~~-i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIED-NEVLGVKLTKG-------EE-IEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecC-CceEEEEccCC-------cE-EecCEEEEccCcch
Confidence 466677778888888777 9999999999876 22355666654 67 99999999999965
No 324
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.7e-05 Score=67.58 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=72.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC-CCCcccccCCCCCe-------EEecccccc---------cCCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRL-------RLHLAKQFC---------QLPHL 68 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~-~~g~~~~~~~~~~~-------~~~~~~~~~---------~~~~~ 68 (255)
..+||+|||||.+|+.+|.+.++.|.+.+++-..- .+|-..+...+.++ ..+.....+ .+...
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 46899999999999999999999999998887643 22222221111111 001111110 11111
Q ss_pred CCCCC-----CCCCCCHHHHHHHHHHHHHhc-CCCCeeEeccEEEEEEEcCCCC----cEEEEEcccCCCCceeeEEEee
Q 025254 69 PFPSS-----YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATN----MWNVKASNLLSPGREIEEYYSG 138 (255)
Q Consensus 69 ~~~~~-----~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~----~~~v~~~~~~~~~~~~~~~i~~ 138 (255)
.-... .....++..+..++++.+... ++.+ +. ..|.++...+..+ .-.|.+.++ .. +.+
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~i--re-~~V~dliv~~~~~~~~~~~gV~l~dg-------t~-v~a 175 (679)
T KOG2311|consen 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEI--RE-GAVADLIVEDPDDGHCVVSGVVLVDG-------TV-VYA 175 (679)
T ss_pred hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchh--hh-hhhhheeeccCCCCceEEEEEEEecC-------cE-ecc
Confidence 10011 112355666666776665544 3442 33 4566665443222 123334443 77 899
Q ss_pred CEEEEeecCC
Q 025254 139 RFLVVASGET 148 (255)
Q Consensus 139 d~vViAtG~~ 148 (255)
+-||+.||.+
T Consensus 176 ~~VilTTGTF 185 (679)
T KOG2311|consen 176 ESVILTTGTF 185 (679)
T ss_pred ceEEEeeccc
Confidence 9999999975
No 325
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.12 E-value=3.3e-06 Score=74.10 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=34.3
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+|+|||||++|+++|..|.+.|++|+|+|+.+.+||
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999998887
No 326
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.12 E-value=7.2e-05 Score=63.45 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCC-eEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~-v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..+++|||+|+.|+.+|..|.+.|.+ |+|+++.... . . +. ..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~----~-------------------------~----~~----~~ 214 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTIN----E-------------------------A----PA----GK 214 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchh----h-------------------------C----CC----CH
Confidence 46899999999999999999989987 9999875421 0 0 00 01
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEccc---------------CCCCceeeEEEeeCEEEEeecC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL---------------LSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~---------------~~~~~~~~~~i~~d~vViAtG~ 147 (255)
...+.++..++.+ ++++.++++...+ ..-.|.+... .++ ++.. +.+|.||+|+|.
T Consensus 215 ~~~~~l~~~gi~i--~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~-i~~D~vi~a~G~ 284 (352)
T PRK12770 215 YEIERLIARGVEF--LELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPG--SEFV-LEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHcCCEE--eeccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCC--CeEE-EECCEEEECccc
Confidence 2223456667766 8888888876432 2222332211 011 2367 999999999994
No 327
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.11 E-value=4.3e-05 Score=64.33 Aligned_cols=134 Identities=17% Similarity=0.095 Sum_probs=67.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCC--CeEEEeccCCCCcccccCCCCCeEEecc---cccccCCCCC-------CCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLA---KQFCQLPHLP-------FPSS 73 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~--~v~lie~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~ 73 (255)
..++|+|||||.++..++..|.+.+. +|+++-|...+-..-....... .-.+ ..++.++... ....
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne--~f~P~~v~~f~~l~~~~R~~~l~~~~~~ 266 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNE--IFSPEYVDYFYSLPDEERRELLREQRHT 266 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHG--GGSHHHHHHHHTS-HHHHHHHHHHTGGG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhh--hcCchhhhhhhcCCHHHHHHHHHHhHhh
Confidence 46899999999999999999998864 7999988663311000000000 0000 0111111000 0000
Q ss_pred CCCCCCHHHHH---HHHH-HHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeec
Q 025254 74 YPMFVSRAQFI---EHLD-HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG 146 (255)
Q Consensus 74 ~~~~~~~~~~~---~~l~-~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG 146 (255)
...-++...+. +.+. +.+.. .-...++.+++|+++...+ ++.+.+.+.+..++ +..+ +.+|.||+|||
T Consensus 267 ny~~i~~~~l~~iy~~lY~~~v~g-~~~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~--~~~~-~~~D~VilATG 338 (341)
T PF13434_consen 267 NYGGIDPDLLEAIYDRLYEQRVSG-RGRLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTG--EEET-LEVDAVILATG 338 (341)
T ss_dssp TSSEB-HHHHHHHHHHHHHHHHHT----SEEETTEEEEEEEEES--SSEEEEEEETTT----EEE-EEESEEEE---
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcC-CCCeEEeCCCEEEEEEECC-CCEEEEEEEECCCC--CeEE-EecCEEEEcCC
Confidence 01112222222 2111 11221 1245558899999999987 34899999886555 5578 99999999999
No 328
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.10 E-value=0.00012 Score=64.13 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
.++|+|||||..|+.+|..|.+.|.+|+++++..... ++.. ..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~---------------------------------~~~~----~~ 314 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRED---------------------------------MTAR----VE 314 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCccc---------------------------------CCCC----HH
Confidence 4799999999999999999999999999998865210 0000 11
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcE-EEEEccc------CCC-------CceeeEEEeeCEEEEeecCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNL------LSP-------GREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~------~~~-------~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
..+.+.+.|+.+ ++++.++++...++ +.. .|.+... .++ .+++.+ +.+|.||+|+| ..|+
T Consensus 315 ~~~~l~~~GV~~--~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~-i~~D~Vi~AiG--~~p~ 388 (449)
T TIGR01316 315 EIAHAEEEGVKF--HFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECK-LEADAVIVAIG--NGSN 388 (449)
T ss_pred HHHHHHhCCCEE--EeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEE-EECCEEEECCC--CCCC
Confidence 123355667776 88888888865431 222 2333210 000 013357 99999999999 5554
Q ss_pred C
Q 025254 153 T 153 (255)
Q Consensus 153 ~ 153 (255)
.
T Consensus 389 ~ 389 (449)
T TIGR01316 389 P 389 (449)
T ss_pred c
Confidence 3
No 329
>PLN02529 lysine-specific histone demethylase 1
Probab=98.07 E-value=5.5e-06 Score=75.88 Aligned_cols=39 Identities=38% Similarity=0.413 Sum_probs=36.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..++|+|||||++|+++|..|++.|++|+|+|+...+||
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 468999999999999999999999999999999988877
No 330
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.06 E-value=4.6e-05 Score=61.82 Aligned_cols=39 Identities=38% Similarity=0.606 Sum_probs=34.3
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCC
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g 43 (255)
...+|+||||||..|++.|++|.-+ +.+|.++|+...++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 3468999999999999999999866 78999999988554
No 331
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.06 E-value=6.4e-06 Score=69.94 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=37.6
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
....||+|||+|.+||.+|+.|.+.|++|+|+|..+.+||
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 4578999999999999999999999999999999998887
No 332
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.03 E-value=6.8e-06 Score=70.33 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=32.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~ 42 (255)
.||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 69999999999999999999999999999986543
No 333
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.00 E-value=8.2e-05 Score=66.95 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 57999999999999999999999999999998763
No 334
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.99 E-value=8.6e-06 Score=71.78 Aligned_cols=36 Identities=33% Similarity=0.366 Sum_probs=34.2
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+|+|||||++|+++|..|.+.|++|+|+|+.+.+||
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999998887
No 335
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.96 E-value=1.8e-05 Score=66.55 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=72.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC--------------CCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPS 72 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~--------------g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (255)
-..++||||||.|+..|.+|+.. ..+|+++|..+.+-..+
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mF-------------------------- 271 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMF-------------------------- 271 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHH--------------------------
Confidence 35899999999999999999842 34799999877431000
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 025254 73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
.+.+.+|-.+...+.++.+ ..++.|..+... ...+...++ +..+ +.+-.+|+|||...+|.
T Consensus 272 -------dkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~----~I~~~~~~g-----~~~~-iPYG~lVWatG~~~rp~ 332 (491)
T KOG2495|consen 272 -------DKRLVEYAENQFVRDGIDL--DTGTMVKKVTEK----TIHAKTKDG-----EIEE-IPYGLLVWATGNGPRPV 332 (491)
T ss_pred -------HHHHHHHHHHHhhhcccee--ecccEEEeecCc----EEEEEcCCC-----ceee-ecceEEEecCCCCCchh
Confidence 1355666667777777776 888888888543 333444322 4477 99999999999766665
Q ss_pred CC
Q 025254 153 TP 154 (255)
Q Consensus 153 ~~ 154 (255)
.-
T Consensus 333 ~k 334 (491)
T KOG2495|consen 333 IK 334 (491)
T ss_pred hh
Confidence 43
No 336
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.95 E-value=1.3e-05 Score=74.09 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=36.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~ 45 (255)
...+|+|||||++|+.+|++|.+.|++|+|+|+...+||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 3579999999999999999999999999999999988873
No 337
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.95 E-value=7.4e-06 Score=62.63 Aligned_cols=138 Identities=16% Similarity=0.272 Sum_probs=77.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC--CCCeEEEeccCCCCc-cccc-CCCCCeEEecccccccC-CCCCCCCCCCCCC---
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS-IWKK-YSYDRLRLHLAKQFCQL-PHLPFPSSYPMFV--- 78 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~--g~~v~lie~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 78 (255)
..||+|||+|.+||++|+...++ ..+|.|||..-.+|| .|.. ..+..+..+.+..++-. ...+|.+. ..|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYede-gdYVVVK 154 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDE-GDYVVVK 154 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccC-CCEEEEe
Confidence 36999999999999999999976 568999999776654 7864 44556655555544322 12222221 1221
Q ss_pred CHHHHH-HHHHHHHHhcCCCCeeEeccEEEEEEEcCCC----------CcEEEEEcccCCCC-ceeeEEEeeCEEEEeec
Q 025254 79 SRAQFI-EHLDHYVSHFNIGPSIRYQRSVESASYDEAT----------NMWNVKASNLLSPG-REIEEYYSGRFLVVASG 146 (255)
Q Consensus 79 ~~~~~~-~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~----------~~~~v~~~~~~~~~-~~~~~~i~~d~vViAtG 146 (255)
+...|. .-+.+.+...+++. +..+.|.++.-.+.. ..|++...+..++. -+... +++..|+-+||
T Consensus 155 HAALFtSTvmsk~LalPNVKL--FNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNv-iea~~vvS~tG 231 (328)
T KOG2960|consen 155 HAALFTSTVMSKVLALPNVKL--FNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNV-IEAAVVVSTTG 231 (328)
T ss_pred eHHHHHHHHHHHHhcCCccee--echhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCe-eeEEEEEEccC
Confidence 122222 23344444445442 332333333322110 13555554432221 12356 88999999999
Q ss_pred CC
Q 025254 147 ET 148 (255)
Q Consensus 147 ~~ 148 (255)
+.
T Consensus 232 HD 233 (328)
T KOG2960|consen 232 HD 233 (328)
T ss_pred CC
Confidence 74
No 338
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.95 E-value=9.2e-06 Score=67.11 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC-CCeEEEeccCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENCY 42 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g-~~v~lie~~~~~ 42 (255)
||++|||+|++|..+|..|++.+ .+|+|+|+++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 69999999999999999999997 699999998853
No 339
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.95 E-value=5.4e-05 Score=62.11 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC----CCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~----g~~v~lie~~~ 40 (255)
...||+|||||-+|.+.|.-|.++ |.+|+++|++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 468999999999999999998754 78999999988
No 340
>PRK12831 putative oxidoreductase; Provisional
Probab=97.94 E-value=0.00034 Score=61.57 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
..++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 35799999999999999999999999999998754
No 341
>PLN02487 zeta-carotene desaturase
Probab=97.94 E-value=1.3e-05 Score=71.74 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=35.8
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
+++|+|||||++|+++|..|.+.|++|+|+|+.+.+||
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG 112 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCC
Confidence 35999999999999999999999999999999998886
No 342
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.92 E-value=6.4e-05 Score=66.66 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
.+...+-+.+...+..+|..+ ..++.|+++.... ++.+.|.+.. .. +++.++|.|+|.|.
T Consensus 184 ~DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~--------G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPH--------GS-IETECVVNAAGVWA 243 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccC--------cc-eecceEEechhHHH
Confidence 455566677888888899887 9999999998765 3566777766 45 89999999999875
No 343
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.92 E-value=4.7e-05 Score=67.33 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.++++|||+|.+|+.+|..|.+.|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5689999999999999999999999999999754
No 344
>PLN02612 phytoene desaturase
Probab=97.88 E-value=2e-05 Score=71.01 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=36.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
.+++|+|||||++|+++|..|.+.|++|+++|+...+||
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 368999999999999999999999999999999887776
No 345
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.88 E-value=0.00028 Score=62.02 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=66.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (255)
...+|+|||+|..|+.+|..|.+.|. +|+++++..... .+ ....
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~------------------------------~~---~~~~-- 316 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE------------------------------MP---ASEE-- 316 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc------------------------------CC---CCHH--
Confidence 35799999999999999999999988 899998754210 00 0011
Q ss_pred HHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEccc------CCC------CceeeEEEeeCEEEEeecCCCCCC
Q 025254 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL------LSP------GREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 85 ~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~------~~~------~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
..+.+.+.|+.+ ++++.+.++...+. ..-.|.+... .++ .+++.+ +.+|.||+|.| ..|.
T Consensus 317 --~~~~~~~~GV~i--~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~-i~~D~vi~a~G--~~p~ 388 (457)
T PRK11749 317 --EVEHAKEEGVEF--EWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFT-LPADLVIKAIG--QTPN 388 (457)
T ss_pred --HHHHHHHCCCEE--EecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEE-EECCEEEECcc--CCCC
Confidence 134456677776 88888888875441 1111222110 000 013368 99999999999 5554
No 346
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.87 E-value=0.00031 Score=59.09 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC----CCCeEEEecc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERE 39 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~----g~~v~lie~~ 39 (255)
..+||+|+||||.|.++|..|..+ .++|.|+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 478999999999999999999865 4589999998
No 347
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.85 E-value=0.00057 Score=63.83 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCC-eEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~-v~lie~~~ 40 (255)
.++|+|||||..|+-+|..+.+.|.+ |+++++..
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999999987 99998864
No 348
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.85 E-value=0.00028 Score=57.93 Aligned_cols=35 Identities=40% Similarity=0.540 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
...|++|||+|.+||.+|.+|+..|.+|+|+|+..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 35799999999999999999999999999999966
No 349
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.85 E-value=2.1e-05 Score=69.85 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=37.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccc
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~ 47 (255)
+||+|||+|++|+.+|+.|++.|++|++||+....++.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 5999999999999999999999999999999998887763
No 350
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.84 E-value=0.0013 Score=58.02 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~ 40 (255)
.++++|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4799999999999999999999985 799998865
No 351
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.76 E-value=0.002 Score=59.31 Aligned_cols=101 Identities=9% Similarity=0.062 Sum_probs=63.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.++|+|||||..|+.+|..+.++|. +|+++.+.+... | + ....
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~--~----------------------------~---~~~~--- 511 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN--M----------------------------P---GSKK--- 511 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC--C----------------------------C---CCHH---
Confidence 4699999999999999999999986 699988764310 0 0 0011
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcc---c---CCC-------CceeeEEEeeCEEEEeecC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN---L---LSP-------GREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~---~~~-------~~~~~~~i~~d~vViAtG~ 147 (255)
..+.+.+.|+.+ .++..++++...+++....|.+.. + .+| .+++.+ +.+|.||+|.|.
T Consensus 512 -e~~~~~~~Gv~~--~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~-i~~D~Vi~AiG~ 582 (654)
T PRK12769 512 -EVKNAREEGANF--EFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFV-MPADAVIMAFGF 582 (654)
T ss_pred -HHHHHHHcCCeE--EeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEE-EECCEEEECccC
Confidence 123456667765 888778777643321222233211 0 000 013468 999999999993
No 352
>PLN03000 amine oxidase
Probab=97.75 E-value=4.3e-05 Score=70.83 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~ 46 (255)
...+|+|||||++|+.+|..|.+.|++|+|+|+...+||..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 35899999999999999999999999999999999998843
No 353
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.74 E-value=0.0017 Score=59.74 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~ 40 (255)
..++|+|||+|..|+.+|..+.+.|. +|+++.+..
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35799999999999999999999986 699998765
No 354
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.74 E-value=7.6e-05 Score=62.94 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=36.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCC--eEEEeccCCCCccccc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIWKK 48 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~--v~lie~~~~~g~~~~~ 48 (255)
..+++|+|||.+||++|++|++++-+ |+|+|+.+++||..+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 57999999999999999999999765 5679999999984444
No 355
>PLN02976 amine oxidase
Probab=97.73 E-value=4.7e-05 Score=73.46 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=38.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~ 48 (255)
..++|+|||||++|+.+|..|.+.|++|+|+|+...+||.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3589999999999999999999999999999999989885543
No 356
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.73 E-value=0.0011 Score=58.55 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=65.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.++|+|||+|..|+.+|..+.+.|. +|++++........+ ......+.++. .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~----------------------~~~~~~~~~~~-----~ 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR----------------------NKNNPWPYWPM-----K 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc----------------------ccccCCcccch-----H
Confidence 5799999999999999999988886 788776554221000 00001111111 1
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcE-EEEEcccC--C-----CCceeeEEEeeCEEEEeecCCCCCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLL--S-----PGREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~--~-----~~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
...+.+.+.|+.+ ++++.++++...+ +.. .|.+.... + ..+++.+ +.+|.||+|+| ..|.
T Consensus 334 ~~~~~~~~~GV~i--~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~-i~~D~VI~A~G--~~p~ 401 (471)
T PRK12810 334 LEVSNAHEEGVER--EFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFV-LPADLVLLAMG--FTGP 401 (471)
T ss_pred HHHHHHHHcCCeE--EeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEE-EECCEEEECcC--cCCC
Confidence 1233455667766 8888888886432 322 23322100 0 0013478 99999999999 4443
No 357
>PRK02106 choline dehydrogenase; Validated
Probab=97.71 E-value=4.3e-05 Score=68.91 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhh-CCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~-~g~~v~lie~~~ 40 (255)
..+|++|||+|++|+.+|..|++ .|.+|+|+|+++
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45899999999999999999999 699999999996
No 358
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.65 E-value=6.6e-05 Score=64.91 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+||+|||+|++|+++|..|++.|.+|+++|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3799999999999999999999999999999874
No 359
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.65 E-value=0.00051 Score=65.92 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=66.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..+|+|||+|+.|+.+|..|++.|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 5799999999999999999999995 57888875421 11
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
.+.+.+++.++.+ +.++.++.+...+ ..-.|++..... +..+ +.+|.|+++.| ..|+
T Consensus 356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~g---~~~~-i~~D~V~va~G--~~Pn 412 (985)
T TIGR01372 356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNGG---AGQR-LEADALAVSGG--WTPV 412 (985)
T ss_pred HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecCC---ceEE-EECCEEEEcCC--cCch
Confidence 2344556677766 8898898886543 322344432111 2267 99999999999 4443
No 360
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.00031 Score=57.88 Aligned_cols=104 Identities=16% Similarity=0.045 Sum_probs=74.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.+++++|||||+.++..|--++.+|-++-++-|.+.+-.. ++ +.+.+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~----------------------FD-----------~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG----------------------FD-----------EMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc----------------------hh-----------HHHHH
Confidence 5789999999999999999999999999998887643111 00 24556
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~ 155 (255)
.+.+..+..++.+ +.++.++.+.+..+.. ..+....+ .. -.+|.|++|+| ..|+.-+
T Consensus 235 ~v~~~~~~~ginv--h~~s~~~~v~K~~~g~-~~~i~~~~-------~i-~~vd~llwAiG--R~Pntk~ 291 (478)
T KOG0405|consen 235 LVTEHLEGRGINV--HKNSSVTKVIKTDDGL-ELVITSHG-------TI-EDVDTLLWAIG--RKPNTKG 291 (478)
T ss_pred HHHHHhhhcceee--cccccceeeeecCCCc-eEEEEecc-------cc-ccccEEEEEec--CCCCccc
Confidence 6666677777666 9999999999887433 33333332 33 45899999999 5555443
No 361
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.001 Score=55.13 Aligned_cols=98 Identities=22% Similarity=0.225 Sum_probs=69.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
..++|+|||||-+++.-|..|.+.+.+|+++=|.+.+. . .+
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a----~~ 182 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------A----EE 182 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------c----CH
Confidence 35699999999999999999999999999998876431 0 12
Q ss_pred HHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCC
Q 025254 86 HLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (255)
Q Consensus 86 ~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~ 153 (255)
.+.+.+... ++.+ ++++++.++.-++ .-.|.+.+.. + ++.. +.+|-++++.| ..|.+
T Consensus 183 ~~~~~l~~~~~i~~--~~~~~i~ei~G~~---v~~v~l~~~~-~--~~~~-~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 183 ILVERLKKNVKIEV--LTNTVVKEILGDD---VEGVVLKNVK-G--EEKE-LPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHHhcCCeEE--EeCCceeEEecCc---cceEEEEecC-C--ceEE-EEeceEEEecC--CCCch
Confidence 333334433 4444 9999999987653 2235555432 1 4478 99999999999 44543
No 362
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00011 Score=65.77 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=35.1
Q ss_pred ccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 2 ~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
..+...+|+||||+|.+|..+|..|+..+.+|+|+|++.
T Consensus 2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 345567999999999999999999998899999999985
No 363
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.51 E-value=0.0082 Score=55.15 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~ 40 (255)
.++|+|||+|..|+.+|..+.++|. +|+++.+.+
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5799999999999999999998985 799998764
No 364
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00033 Score=57.34 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=32.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~ 42 (255)
..|-|||||.+|-.+|.++++.|.+|.++|-.+.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 57999999999999999999999999999998743
No 365
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.46 E-value=0.0052 Score=53.44 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=34.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhC----CCCeEEEeccCCCCcc
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASI 45 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~----g~~v~lie~~~~~g~~ 45 (255)
+++.=|||+|.++|++|..|.+. |.+|+|+|+....||.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 46788999999999999999987 4599999999877763
No 366
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.38 E-value=0.013 Score=52.10 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~ 41 (255)
..++|+|||||..|+.+|..+.+.+. +|+++|..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 35799999999999999988888875 7999988664
No 367
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.36 E-value=0.0032 Score=60.02 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.++|+|||||..|+-+|..+.+.|.+|+++.+..
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 5799999999999999999999999999998764
No 368
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00033 Score=56.44 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=27.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCC-------CCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQS-------IPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g-------~~v~lie~~~ 40 (255)
..+|+|||+|..|+++|..+.+.. .+|++++...
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 469999999999999998888743 4788876654
No 369
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.32 E-value=0.0002 Score=64.14 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=30.8
Q ss_pred eEEEECCCHHHHHHHHHHhhCC-CCeEEEeccCC
Q 025254 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENC 41 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g-~~v~lie~~~~ 41 (255)
|++|||+|.+|+.+|..|++.+ .+|+|+|+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 69999999863
No 370
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.31 E-value=0.0083 Score=57.16 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC-C-CCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ-S-IPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~-g-~~v~lie~~~ 40 (255)
..++|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 357999999999999999999887 4 3899998865
No 371
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.29 E-value=0.0026 Score=54.16 Aligned_cols=61 Identities=7% Similarity=-0.018 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 025254 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 79 ~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
....+.+.|...+++.++.+ +++++|+++ .+ +.|.+.+... ... +++|.||+|||+.+.|.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i--~~--~~~~v~~~~~------~~~-~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGW--QG--GTLRFETPDG------QST-IEADAVVLALGGASWSQ 144 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEE--EeCCEEEEE--eC--CcEEEEECCC------ceE-EecCEEEEcCCCccccc
Confidence 46788889999999999887 999999999 22 3577776432 156 89999999999865443
No 372
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.27 E-value=0.0091 Score=57.51 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=29.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCC-eEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~-v~lie~~~ 40 (255)
..++|+|||||..|+-+|..+.+.|.+ |+++.+..
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 358999999999999999999999984 77776543
No 373
>PLN02785 Protein HOTHEAD
Probab=97.23 E-value=0.0004 Score=62.73 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
..+|++|||||.+|+.+|..|++ +.+|+|+|++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 36899999999999999999999 689999999873
No 374
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.21 E-value=0.0012 Score=57.95 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
..++|+|||+|.+|+-+|..|.+.+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 45899999999999999999999999999998865
No 375
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.14 E-value=0.00042 Score=58.98 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=36.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~ 44 (255)
..+|++|||+|.-||.+|..|++.|.+|+++|+....||
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 468999999999999999999999999999999976665
No 376
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.11 E-value=0.014 Score=55.85 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC-CC-CeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~-g~-~v~lie~~~ 40 (255)
..++|+|||||..|+-+|..+.+. |. +|+++.+..
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 468999999999999999999886 75 799998865
No 377
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.11 E-value=0.0022 Score=54.25 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=66.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC----CCCeE-EEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYV-ILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~----g~~v~-lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
.+..|.|||+|.-|-.+|+.|.+. |.+|. +++..-.. ....|
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm----------------------------~kiLP----- 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM----------------------------EKILP----- 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh----------------------------hhhhH-----
Confidence 357999999999999999999865 33332 22221100 00011
Q ss_pred HHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecC
Q 025254 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (255)
Q Consensus 81 ~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~ 147 (255)
.-+.++-.+.+++-|+.+ +-+..|.++.... ....+.+.++ .+ ++.|.||+|+|.
T Consensus 393 eyls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG-------~~-l~tD~vVvavG~ 447 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG-------SE-LRTDLVVVAVGE 447 (659)
T ss_pred HHHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC-------Ce-eeeeeEEEEecC
Confidence 223344455566667776 9999999998877 7777888876 77 999999999994
No 378
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.10 E-value=0.0026 Score=56.90 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
..++|+|||+|.+|.-.|..|++...+|.+.-|..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 46899999999999999999999988998887754
No 379
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0016 Score=53.65 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=75.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
+-+-+|||||+.+|.||-.|.-.|++|++.=|.--+ ..++ +++.+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L-----------------------rGFD-----------qdmae~ 243 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL-----------------------RGFD-----------QDMAEL 243 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec-----------------------cccc-----------HHHHHH
Confidence 457899999999999999999999999988653211 1111 377888
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
+.+..+..|+.+ ......+.++..+ .+...|...+..++ ++.+ -.+|.|++|.|.-
T Consensus 244 v~~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t~--~~~~-~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 244 VAEHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNTG--EEGE-EEYDTVLWAIGRK 299 (503)
T ss_pred HHHHHHHhCCce--eecccceeeeecc-CCcEEEEeeccccc--cccc-chhhhhhhhhccc
Confidence 888889999885 5555666666655 35577777666554 4455 6789999999953
No 380
>PRK13984 putative oxidoreductase; Provisional
Probab=97.04 E-value=0.033 Score=50.90 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=25.9
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC------CeEEEe
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI------PYVILE 37 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~------~v~lie 37 (255)
.++|+|||||..|+.+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 5799999999999999999988743 566653
No 381
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.02 E-value=0.0079 Score=50.89 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=39.1
Q ss_pred CCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCC
Q 025254 97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (255)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~ 154 (255)
.+.++.+++|.+++...+ +.+.+.+....++ +..+ ++.|.||+|||- ...+|
T Consensus 292 ~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~--~~~t-~~~D~vIlATGY--~~~~P 343 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD-GRYRLTLRHHETG--ELET-VETDAVILATGY--RRAVP 343 (436)
T ss_pred CeeeccccceeeeecCCC-ceEEEEEeeccCC--CceE-EEeeEEEEeccc--ccCCc
Confidence 344588889999998873 4488888776555 6688 999999999994 44444
No 382
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.99 E-value=0.0071 Score=52.49 Aligned_cols=95 Identities=15% Similarity=0.050 Sum_probs=66.1
Q ss_pred EEECCCHHHHHHH-HHHh----hCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 11 IMVGAGTSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 11 vIIG~G~~Gl~~a-~~l~----~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
+|++.|..|+..+ ..+. +.|.+|++++..+.. .+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 5688888888887 4443 459999999776521 12236777
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s 149 (255)
.+.+.+++.++.+ +.+++|+++...+ +...+...... ++.. +++|.+|+|+|...
T Consensus 264 aL~~~l~~~Gv~I--~~g~~V~~v~~~~--~~V~~v~~~~g----~~~~-i~AD~VVLAtGrf~ 318 (422)
T PRK05329 264 ALRRAFERLGGRI--MPGDEVLGAEFEG--GRVTAVWTRNH----GDIP-LRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHhCCCEE--EeCCEEEEEEEeC--CEEEEEEeeCC----ceEE-EECCEEEEeCCCcc
Confidence 7888888888766 9999999998765 44333222111 2367 89999999999754
No 383
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.90 E-value=0.0012 Score=58.84 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhC-CCCeEEEeccCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY 42 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~-g~~v~lie~~~~~ 42 (255)
..+|.+|||||.+|+.+|..|++. .++|.|+|++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999998 5799999998854
No 384
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.84 E-value=0.024 Score=51.32 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCC-CCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g-~~v~lie~~~ 40 (255)
.++|+|||+|..|+.++..+.+.+ .+|+++.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 578999999999999999898888 5688887754
No 385
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.78 E-value=0.0035 Score=56.72 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=70.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (255)
..+-+|||||.-|+.+|..|...|.++++++-.+.+... + .+ ..-.+.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMer---Q----------------------------LD-~~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER---Q----------------------------LD-RTAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHH---h----------------------------hh-hHHHHH
Confidence 456799999999999999999999999999665432100 0 00 122356
Q ss_pred HHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCC
Q 025254 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (255)
Q Consensus 87 l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~ 152 (255)
|++..++.++.+ +++...+.+...+ ..-.+.+.++ .. +.||.||.|+| =+|+
T Consensus 193 L~~~le~~Gi~~--~l~~~t~ei~g~~--~~~~vr~~DG-------~~-i~ad~VV~a~G--IrPn 244 (793)
T COG1251 193 LRRKLEDLGIKV--LLEKNTEEIVGED--KVEGVRFADG-------TE-IPADLVVMAVG--IRPN 244 (793)
T ss_pred HHHHHHhhccee--ecccchhhhhcCc--ceeeEeecCC-------Cc-ccceeEEEecc--cccc
Confidence 777788888877 7776666665533 4455666665 67 89999999999 4443
No 386
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.75 E-value=0.0017 Score=48.44 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=30.0
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
+|+|||||..|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999998765
No 387
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.75 E-value=0.002 Score=40.68 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=27.2
Q ss_pred EEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 191 VVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 191 ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999987
No 388
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.74 E-value=0.002 Score=55.78 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=34.5
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCccccc
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~ 48 (255)
...+||+|+|-|..-.-+|..|++.|.+|.-+|+++..||.|..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 35799999999999999999999999999999999999997655
No 389
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.0026 Score=50.42 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=31.5
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
++++|||+|..|..+|..|.+.|++|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999987
No 390
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.62 E-value=0.0029 Score=48.26 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=28.4
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999966
No 391
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.57 E-value=0.0024 Score=48.97 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=27.6
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
++|.|||.|+.|+.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999999774
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.50 E-value=0.0051 Score=45.80 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEecc
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~ 39 (255)
..++|+|||||..|..-+..|.+.|.+|++|++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4689999999999999999999999999999654
No 393
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.48 E-value=0.0051 Score=51.30 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=34.0
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
|..+..-++|.|||+|..|...|..++..|++|+++|..+
T Consensus 1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4333334689999999999999999999999999999876
No 394
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.48 E-value=0.0033 Score=43.29 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
+.++++|||||..|..-+..|.+.|.+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 46899999999999999999999999999998873
No 395
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.45 E-value=0.0059 Score=47.59 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
..++++|||||.+|..-+..|.+.|.+|+|+++..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 357999999999999999999999999999988653
No 396
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.28 E-value=0.0081 Score=46.72 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
..++++|||||-.|...+..|.+.|.+|+++++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 46899999999999999999999999999998753
No 397
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.024 Score=44.20 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
.++-++|||||-+.+.=|..|.+.+.+|-|+-|.+.+ .-..
T Consensus 156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f---------------------------------------RAs~ 196 (322)
T KOG0404|consen 156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF---------------------------------------RASK 196 (322)
T ss_pred cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh---------------------------------------hHHH
Confidence 4678999999999999999999999999999876643 1123
Q ss_pred HHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 86 ~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
.+++.+.+ +..+.+++++.+.+.--+. ...-.+.+++..++ ++.. ++.+-|+.|.|+.
T Consensus 197 ~Mq~ra~~-npnI~v~~nt~~~ea~gd~-~~l~~l~ikn~~tg--e~~d-l~v~GlFf~IGH~ 254 (322)
T KOG0404|consen 197 IMQQRAEK-NPNIEVLYNTVAVEALGDG-KLLNGLRIKNVKTG--EETD-LPVSGLFFAIGHS 254 (322)
T ss_pred HHHHHHhc-CCCeEEEechhhhhhccCc-ccccceEEEecccC--cccc-cccceeEEEecCC
Confidence 34444443 3344458888776654432 12233556666555 6678 9999999999963
No 398
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.24 E-value=0.0051 Score=53.06 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=31.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
++|+|||+|..|+++|..|++.|.+|+++++++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999877
No 399
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.072 Score=44.44 Aligned_cols=106 Identities=19% Similarity=0.145 Sum_probs=66.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCCCeEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
+.+||+|||||-+|+.+|..|+-.=..|+++|=.+.+ .-..
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL---------------------------------------kAD~ 393 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL---------------------------------------KADA 393 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh---------------------------------------hhHH
Confidence 4689999999999999999998765688998765532 1123
Q ss_pred HHHHHHHhc-CCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCCCCCCCCC
Q 025254 86 HLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (255)
Q Consensus 86 ~l~~~~~~~-~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~~~~~~~g 158 (255)
-|++.+... ++.+ ..+..-+.+.-+. .....+.+.+..++ ++.. +.-+-|++-.| -.|+...+.|
T Consensus 394 VLq~kl~sl~Nv~i--i~na~Ttei~Gdg-~kV~Gl~Y~dr~sg--e~~~-l~LeGvFVqIG--L~PNT~WLkg 459 (520)
T COG3634 394 VLQDKLRSLPNVTI--ITNAQTTEVKGDG-DKVTGLEYRDRVSG--EEHH-LELEGVFVQIG--LLPNTEWLKG 459 (520)
T ss_pred HHHHHHhcCCCcEE--EecceeeEEecCC-ceecceEEEeccCC--ceeE-EEeeeeEEEEe--cccChhHhhc
Confidence 344444443 3443 7777667766543 12233445444443 4456 77778888888 4444433333
No 400
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.18 E-value=0.0063 Score=51.34 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=31.2
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
++|.|||.|+.|+..+..|++.|++|+++|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999876
No 401
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.10 E-value=0.006 Score=41.97 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 184 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..+++++|||+|..|..-+..|.+.|.+|+++.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 467899999999999999999999999999999883
No 402
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.0073 Score=53.19 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=30.8
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
+|+|||.|.+|+++|+.|.+.|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 689999999999999999999999999998764
No 403
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.08 E-value=0.0083 Score=49.95 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999976
No 404
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.06 E-value=0.0066 Score=52.54 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=30.6
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
+|+|||+|..|+++|..|++.|.+|+++++++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 68999999999999999999999999999877
No 405
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.03 E-value=0.01 Score=48.83 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.8
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
.+|.|||+|..|...|..++..|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5899999999999999999999999999999763
No 406
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.99 E-value=0.011 Score=43.51 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 10 vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
|+|+|+|..|...|..|.+.|.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998864
No 407
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.95 E-value=0.011 Score=48.72 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 479999999999999999999999999999876
No 408
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.013 Score=51.36 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.++++|+|+|..|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5899999999999999999999999999999975
No 409
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.89 E-value=0.012 Score=48.49 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 589999999999999999999999999999865
No 410
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.85 E-value=0.015 Score=43.78 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+.+|+|+|+|.+|..|+..|..+|.+++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 46899999999999999999999999999999865
No 411
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.84 E-value=0.014 Score=52.01 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=34.7
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
|..+..-.+|.|||+|..|...|..+++.|++|+++|+.+
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4444445789999999999999999999999999999876
No 412
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.84 E-value=0.024 Score=41.05 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCC-eEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~-v~lie~~~ 40 (255)
..++++|||+|-+|-.++..|...|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 468999999999999999999999986 99998864
No 413
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.83 E-value=0.029 Score=48.10 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
+.+...+...+.+.+.+ ++.+ +.+++|++++..+ +.+.|.+.++ .. +++|.||+|+|.++..
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTL--HFNTEITSLERDG--EGWQLLDANG-------EV-IAASVVVLANGAQAGQ 192 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEE--EeCCEEEEEEEcC--CeEEEEeCCC-------CE-EEcCEEEEcCCccccc
Confidence 34556666777776766 7665 8999999998765 5677777654 56 8999999999987643
No 414
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.80 E-value=0.019 Score=47.91 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
..+|+|||+|..|...|..|++.|.+|+++.+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999999865
No 415
>PRK07236 hypothetical protein; Provisional
Probab=95.75 E-value=0.012 Score=50.46 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 185 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
...+|+|||+|..|..+|..|.+.|.+|+++++++
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35789999999999999999999999999999986
No 416
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.71 E-value=0.015 Score=48.06 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999876
No 417
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.71 E-value=0.013 Score=50.80 Aligned_cols=34 Identities=44% Similarity=0.696 Sum_probs=32.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 186 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.++++|||||..|+++|..|++.|.+|+|++..+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5799999999999999999999999999999987
No 418
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.70 E-value=0.017 Score=47.62 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 689999999999999999999999999999865
No 419
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.016 Score=49.07 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=43.0
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCCCcccccCCCC
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD 52 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~g~~~~~~~~~ 52 (255)
+..+||||||-|..=--+|.+..+.|.+|.=+|+++..||.|..-.++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 457999999999999999999999999999999999999999875443
No 420
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.60 E-value=0.014 Score=48.96 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=28.9
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.|+|||+|..|.-+|..|++.|.+|++++|++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 68999999999999999999999999999987
No 421
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.59 E-value=0.024 Score=47.18 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
++|+|||+|..|...|..|.+.|.+|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 589999999999999999999999999999963
No 422
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.58 E-value=0.02 Score=47.43 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=29.8
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
+|+|||+|..|...|..|.+.|.+|+++++.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999843
No 423
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.55 E-value=0.02 Score=41.37 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~ 40 (255)
+.+|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999998 799999976
No 424
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.54 E-value=0.022 Score=47.24 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=29.0
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEec
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILER 38 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~ 38 (255)
+|+|||+|..|...|..|++.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 425
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.53 E-value=0.018 Score=51.02 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=35.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecCceeec
Q 025254 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPACLWR 224 (255)
Q Consensus 184 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~~~~~~ 224 (255)
...++|+|||+|.+|+-+|..|...|.+|++++-++ ++=.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd-RvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD-RVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC-CcCc
Confidence 346789999999999999999999999999999987 5443
No 426
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.52 E-value=0.016 Score=50.12 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=31.1
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+|+|||+|.+|.-+|..|++.|.+|++++|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999975
No 427
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.51 E-value=0.02 Score=46.99 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999765
No 428
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.51 E-value=0.024 Score=47.22 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
-++|.|||+|..|...|..|++.|++|+++|+..
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999999755
No 429
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.49 E-value=0.022 Score=47.06 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
++|.|||+|..|...|..|+..|++|+++|+.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999865
No 430
>PRK04148 hypothetical protein; Provisional
Probab=95.47 E-value=0.016 Score=41.63 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=31.0
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
..++++||.| .|...|..|.+.|.+|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4689999999 999999999999999999998774
No 431
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.45 E-value=0.021 Score=42.55 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEe
Q 025254 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217 (255)
Q Consensus 183 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r 217 (255)
...+++++|||||..|..-+..|.+.|.+|+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 34689999999999999999999999999999954
No 432
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.45 E-value=0.019 Score=49.37 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=32.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 186 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
+.+|+|||+|..|.-+|..|.+.|.+|++++|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999986
No 433
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.43 E-value=0.017 Score=49.71 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=32.9
Q ss_pred eeEeccEEEEEEEcCCCCcEEEEEcccCCCCceeeEEEeeCEEEEeecCC
Q 025254 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (255)
Q Consensus 99 ~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~d~vViAtG~~ 148 (255)
.++++++|++|+..+ +.+.|.+.++ .+ +.||+||+|+...
T Consensus 225 ~i~l~~~V~~I~~~~--~~v~v~~~~g-------~~-~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 225 EIRLNTPVTRIERED--GGVTVTTEDG-------ET-IEADAVISAVPPS 264 (450)
T ss_dssp GEESSEEEEEEEEES--SEEEEEETTS-------SE-EEESEEEE-S-HH
T ss_pred eeecCCcceeccccc--cccccccccc-------eE-EecceeeecCchh
Confidence 469999999999988 8888888886 57 9999999999864
No 434
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.41 E-value=0.022 Score=49.49 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=31.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
++|.|||.|..|+.+|..|++.|++|+.+|+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999866
No 435
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.36 E-value=0.048 Score=45.66 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCeeEeccEEEEEEEcCCCCcE-EEEEcccCCCCceeeEEEeeCEEEEeecCCCCC
Q 025254 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (255)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~i~~d~vViAtG~~s~~ 151 (255)
+.+...+...+.+.+.+.|+.+ +.+++|+++...+ +.+ .|.+.+ .+ ++||.||+|+|.++..
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~~v~~~~--------g~-~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEI--IEHTEVQHIEIRG--EKVTAIVTPS--------GD-VQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEE--EccceEEEEEeeC--CEEEEEEcCC--------CE-EECCEEEEcCChhhhh
Confidence 4556788888888888888776 8999999999765 433 455433 56 8999999999987654
No 436
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.35 E-value=0.024 Score=50.14 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhh--hcCeEEEEEecC
Q 025254 185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVVRSP 219 (255)
Q Consensus 185 ~~~~v~ViG~g~~~~e~a~~l~~--~g~~v~~~~r~~ 219 (255)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 46789999999999999999987 699999999998
No 437
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.29 E-value=0.033 Score=49.03 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh-hhcCeEEEEEecC
Q 025254 185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVVRSP 219 (255)
Q Consensus 185 ~~~~v~ViG~g~~~~e~a~~l~-~~g~~v~~~~r~~ 219 (255)
.+++|+|||+|+.|+.+|..+. +.|.+|+++++.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999999999999999765 5699999999998
No 438
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.28 E-value=0.026 Score=44.00 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 184 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..+++++|||||.+|..-+..|.+.|.+|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 457899999999999999999999999999998754
No 439
>PRK06847 hypothetical protein; Provisional
Probab=95.27 E-value=0.023 Score=48.50 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=31.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 186 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..+|+|||+|..|.-+|..|.+.|.+|+++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999976
No 440
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.03 Score=43.64 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 183 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
++....++|+|+|++|.-+|..|++.|.+|.+++|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 3456789999999999999999999999999999984
No 441
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.26 E-value=0.019 Score=41.62 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 10 VIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 10 vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
++|+|+|+.+..++..+...|++|+++|..+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 68999999999999999999999999999863
No 442
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.23 E-value=0.025 Score=43.96 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEec
Q 025254 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (255)
Q Consensus 184 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~ 218 (255)
..+++++|||+|..|...+..|.+.|.+|+++.+.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 46899999999999999999999999999999765
No 443
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.21 E-value=0.022 Score=49.82 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=30.2
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhc--CeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g--~~v~~~~r~~ 219 (255)
++++|||+|.+|.-+|..|.+.| .+|++++.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 47999999999999999999988 7899999875
No 444
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.20 E-value=0.043 Score=45.94 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~ 41 (255)
...+|+|||+|..|..+|..++..+. +++|+|..+.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 45799999999999999999998886 8999998774
No 445
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.20 E-value=0.034 Score=47.52 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+.+++|||+|.+|..++..|...|.+|+++|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 35789999999999999999999999999999864
No 446
>PRK07233 hypothetical protein; Provisional
Probab=95.20 E-value=0.021 Score=49.69 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=30.5
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
+|+|||+|.+|.-+|..|.+.|.+|+++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 58999999999999999999999999999987
No 447
>PRK05868 hypothetical protein; Validated
Probab=95.19 E-value=0.022 Score=48.76 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=31.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
++|+|||+|..|.-+|..|++.|.+|+++++++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999986
No 448
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.18 E-value=0.025 Score=47.52 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=30.3
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.++|||+|..|.-+|..|++.|.+|+++++..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 47999999999999999999999999999984
No 449
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.17 E-value=0.037 Score=46.05 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
+.++|.|||+|..|...|..|.+.|++|+++++..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35789999999999999999999999999999865
No 450
>PRK06753 hypothetical protein; Provisional
Probab=95.17 E-value=0.024 Score=48.42 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=30.8
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
+|+|||+|..|.-+|..|++.|.+|+++++++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999987
No 451
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.14 E-value=0.028 Score=39.27 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 10 vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
|+|+|.|..|..++..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999777999999987
No 452
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.09 E-value=0.037 Score=46.72 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 479999999999999999999999999999864
No 453
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.08 E-value=0.037 Score=46.08 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHhhCC--CCeEEEeccCC
Q 025254 9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENC 41 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~~ 41 (255)
+|.|||+|..|..+|..|+..| ..++++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 7999999999999999999998 47999998763
No 454
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.08 E-value=0.041 Score=46.52 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=32.8
Q ss_pred CccccCCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 1 M~~~~~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
|+..+...+|+|||+|..|.++|..|++.| .++++.+++
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~ 39 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSA 39 (341)
T ss_pred CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCH
Confidence 666666789999999999999999999998 677776644
No 455
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.07 E-value=0.061 Score=47.30 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 185 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..-.|+|||+|+.|.-+|..+++.|.+|.+++++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34579999999999999999999999999999975
No 456
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.04 E-value=0.038 Score=46.40 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=30.0
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
+|.|||+|..|...|..|++.|++|+++++..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999854
No 457
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.04 E-value=0.03 Score=48.66 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.8
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998763
No 458
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.03 E-value=0.026 Score=48.74 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=31.6
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
++|+|||+|..|.-+|..|.+.|.+|+++++++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999986
No 459
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.03 E-value=0.045 Score=45.51 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~ 41 (255)
.+|.|||+|..|..+|..|+..|. +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 589999999999999999999876 8999998554
No 460
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.01 E-value=0.027 Score=48.03 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=30.7
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
-.++|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 358999999999999999999999999999875
No 461
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.01 E-value=0.044 Score=46.03 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
..+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3589999999999999999999999999999964
No 462
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.99 E-value=0.04 Score=42.78 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~ 40 (255)
..+|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5799999999999999999999999 699999974
No 463
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.97 E-value=0.052 Score=39.63 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=29.5
Q ss_pred CeEEEECC-CHHHHHHHHHHhhCCC--CeEEEeccC
Q 025254 8 VEVIMVGA-GTSGLATAACLSLQSI--PYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~-G~~Gl~~a~~l~~~g~--~v~lie~~~ 40 (255)
.+|+|||+ |..|.++|..|...+. ++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 38999999 9999999999998865 699999875
No 464
>PRK07045 putative monooxygenase; Reviewed
Probab=94.97 E-value=0.028 Score=48.26 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=31.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
-+|+|||+|..|.-+|..|++.|.+|+++++++
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 479999999999999999999999999999987
No 465
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.97 E-value=0.03 Score=48.19 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=31.2
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..|+|||+|..|.-+|..|.+.|.+|+++++++
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 579999999999999999999999999999983
No 466
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.95 E-value=0.033 Score=52.87 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 184 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..+++|+|||+|+.|+.+|..|+..|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999999864
No 467
>PLN02268 probable polyamine oxidase
Probab=94.89 E-value=0.03 Score=48.93 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=30.8
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+|+|||+|.+|.-+|..|.+.|.+|++++.++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 378999999999999999999999999999876
No 468
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.87 E-value=0.059 Score=45.02 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=32.5
Q ss_pred cCCCeEEEECCCHHHHHHHHHHhhCCC--CeEEEeccCC
Q 025254 5 AAGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENC 41 (255)
Q Consensus 5 ~~~~~vvIIG~G~~Gl~~a~~l~~~g~--~v~lie~~~~ 41 (255)
+.+.+|+|||+|..|.++|..|...+. +++|+|....
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 456899999999999999999998887 7999998653
No 469
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.87 E-value=0.047 Score=40.90 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.+||-|..|...|..|.+.|++|.++|+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 589999999999999999999999999999875
No 470
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.86 E-value=0.033 Score=45.54 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.3
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.|+|||+|.+|.-+|..|++.|.+|+++++++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999986
No 471
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.84 E-value=0.041 Score=46.03 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 472
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.81 E-value=0.047 Score=47.31 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=31.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 186 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
...|+|||+|..|.-+|..|++.|.+|+++++++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 3579999999999999999999999999999987
No 473
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=94.81 E-value=0.035 Score=42.75 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=29.4
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
+++|||+|..|+.+|..|.+.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999997655
No 474
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.77 E-value=0.035 Score=47.48 Aligned_cols=32 Identities=41% Similarity=0.500 Sum_probs=30.0
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999965
No 475
>PRK07588 hypothetical protein; Provisional
Probab=94.76 E-value=0.035 Score=47.79 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=30.6
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
+|+|||+|..|.-+|..|++.|.+|+++++++
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 68999999999999999999999999999986
No 476
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.75 E-value=0.069 Score=41.49 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.++++|+|.|-.|..+|..|.+.|.+|+++|++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 5789999999999999999999999999998753
No 477
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.73 E-value=0.053 Score=44.04 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~ 41 (255)
..+|+|||.|..|..+|..|++.|. +++|+|.+..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 5799999999999999999999995 8999998763
No 478
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.72 E-value=0.047 Score=48.28 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.++|+|+|.|-+|.++|..|.+.|.+|++.|...
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 5789999999999999999999999999999654
No 479
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.69 E-value=0.063 Score=43.11 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
...+++|+|+|+.+..+|..+...|++|+++|..+.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 357999999999999999999999999999998764
No 480
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.69 E-value=0.069 Score=40.19 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCCeEEEECCCH-HHHHHHHHHhhCCCCeEEEecc
Q 025254 6 AGVEVIMVGAGT-SGLATAACLSLQSIPYVILERE 39 (255)
Q Consensus 6 ~~~~vvIIG~G~-~Gl~~a~~l~~~g~~v~lie~~ 39 (255)
..++++|||+|- +|..+|..|.+.|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 468999999996 6999999999999999999864
No 481
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.68 E-value=0.064 Score=42.52 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCC---eEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIP---YVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~---v~lie~~~ 40 (255)
...+++|+|+|-+|..+|..|.+.|.+ +.++|+..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 357999999999999999999999874 99999974
No 482
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.67 E-value=0.044 Score=48.82 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
-.+|.|||+|..|...|..+++.|++|+++|+.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4689999999999999999999999999999875
No 483
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.66 E-value=0.057 Score=46.65 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
..+|+|+|.|+.|+.+|..+...|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 5799999999999999999999999999998865
No 484
>PRK06184 hypothetical protein; Provisional
Probab=94.64 E-value=0.043 Score=48.94 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=31.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..|+|||+|.+|.-+|..|++.|.+|+++++++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 579999999999999999999999999999986
No 485
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.63 E-value=0.055 Score=48.02 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
.+.+|+|+|+|++|+.++..+...|.+|+++|..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36799999999999999999999999999999866
No 486
>PRK07208 hypothetical protein; Provisional
Probab=94.62 E-value=0.042 Score=48.68 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=31.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 186 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.++++|||+|.+|.-+|..|.++|.+|+++++++
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4679999999999999999999999999999876
No 487
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.59 E-value=0.038 Score=47.59 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=31.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 186 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
...|+|||+|..|.-+|..|++.|.+|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3579999999999999999999999999999976
No 488
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.58 E-value=0.035 Score=45.42 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 7 ~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
+-+|+|||||.+|..+|+.+...|.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4689999999999999999999999999999974
No 489
>PRK09126 hypothetical protein; Provisional
Probab=94.55 E-value=0.038 Score=47.49 Aligned_cols=33 Identities=36% Similarity=0.688 Sum_probs=31.2
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
-.|+|||+|..|.-+|..|++.|.+|+++++++
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999986
No 490
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.55 E-value=0.054 Score=47.79 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHHhhCC--CCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g--~~v~lie~~~ 40 (255)
++|+|||.|..|+.+|..|++.| ++|+.+|.++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 47999999999999999999884 7899999766
No 491
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.52 E-value=0.046 Score=47.12 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=31.6
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.+|+|||+|..|.-+|..|.+.|.+|+++++++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 579999999999999999999999999999987
No 492
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.50 E-value=0.041 Score=47.06 Aligned_cols=32 Identities=34% Similarity=0.683 Sum_probs=30.4
Q ss_pred eEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 188 ~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
.|+|||+|..|.-+|..|++.|.+|++++|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 38999999999999999999999999999997
No 493
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.46 E-value=0.051 Score=46.49 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=31.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 186 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
...++|||+|.+|.-.|..|++.|.+|+++++..
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4689999999999999999999999999999876
No 494
>PRK08013 oxidoreductase; Provisional
Probab=94.43 E-value=0.042 Score=47.47 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=31.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..|+|||+|..|.-+|..|++.|.+|+++++++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 479999999999999999999999999999987
No 495
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.42 E-value=0.057 Score=46.45 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.5
Q ss_pred eEEEECCCHHHHHHHHHHhhCCCCeEEEeccCC
Q 025254 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (255)
Q Consensus 9 ~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~ 41 (255)
+|.|||.|..|+.+|..++. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999987775 999999999763
No 496
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.42 E-value=0.065 Score=47.71 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCCCeEEEeccC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~ 40 (255)
++|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999865
No 497
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.39 E-value=0.042 Score=47.18 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=31.1
Q ss_pred CeEEEEcCCcCHHHHHHHHhhhcCeEEEEEecC
Q 025254 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (255)
Q Consensus 187 ~~v~ViG~g~~~~e~a~~l~~~g~~v~~~~r~~ 219 (255)
..|+|||+|..|.-+|..|++.|.+|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 469999999999999999999999999999986
No 498
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.39 E-value=0.073 Score=44.26 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHHHhhCCC-CeEEEeccCC
Q 025254 8 VEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (255)
Q Consensus 8 ~~vvIIG~G~~Gl~~a~~l~~~g~-~v~lie~~~~ 41 (255)
.+|+|||+|..|..+|..++..+. +|+++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 599999999999999999998765 9999998653
No 499
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.39 E-value=0.058 Score=46.94 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHhhCCCCeEEEeccCCC
Q 025254 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (255)
Q Consensus 6 ~~~~vvIIG~G~~Gl~~a~~l~~~g~~v~lie~~~~~ 42 (255)
..++|+|+|-|-+|+++|..|.++|.+|++.|..+..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 3789999999999999999999999999999976654
No 500
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.39 E-value=0.08 Score=38.28 Aligned_cols=37 Identities=41% Similarity=0.629 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHhhhcCe-EEEEEecC
Q 025254 183 PYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP 219 (255)
Q Consensus 183 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~~~~r~~ 219 (255)
...+++++|||+|-.|--++..|...|.+ |+++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 35689999999999999999999999976 99999985
Done!