Query 025256
Match_columns 255
No_of_seqs 406 out of 2284
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1E-39 2.2E-44 268.3 10.9 169 76-254 1-182 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 3.1E-39 6.7E-44 271.9 12.2 170 76-255 2-177 (248)
3 COG2884 FtsE Predicted ATPase 100.0 4.7E-37 1E-41 247.7 11.4 169 77-254 1-183 (223)
4 COG1136 SalX ABC-type antimicr 100.0 1.2E-36 2.6E-41 255.4 12.3 172 77-254 1-188 (226)
5 COG1125 OpuBA ABC-type proline 100.0 5.4E-37 1.2E-41 257.5 9.8 168 77-254 1-181 (309)
6 COG1124 DppF ABC-type dipeptid 100.0 2.5E-36 5.4E-41 252.6 11.7 175 75-254 1-187 (252)
7 COG1131 CcmA ABC-type multidru 100.0 6.7E-36 1.4E-40 263.4 13.5 170 75-254 2-182 (293)
8 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.2E-36 1.8E-40 253.9 12.7 172 75-254 2-185 (254)
9 COG1135 AbcC ABC-type metal io 100.0 5.3E-36 1.2E-40 257.9 11.6 172 77-254 1-187 (339)
10 COG3839 MalK ABC-type sugar tr 100.0 4.4E-36 9.6E-41 265.7 11.4 169 75-253 1-178 (338)
11 COG1127 Ttg2A ABC-type transpo 100.0 2.1E-35 4.4E-40 246.4 10.9 170 75-254 6-191 (263)
12 COG3638 ABC-type phosphate/pho 100.0 2.1E-35 4.6E-40 245.7 10.6 169 76-254 2-193 (258)
13 COG3842 PotA ABC-type spermidi 100.0 2.8E-35 6.1E-40 261.9 9.3 169 75-253 3-181 (352)
14 COG4555 NatA ABC-type Na+ tran 100.0 2.6E-35 5.6E-40 239.7 7.2 168 77-253 1-178 (245)
15 COG1120 FepC ABC-type cobalami 100.0 1.9E-34 4.1E-39 246.6 12.5 168 77-254 2-184 (258)
16 PRK13537 nodulation ABC transp 100.0 8.7E-34 1.9E-38 251.6 13.2 168 76-253 6-183 (306)
17 PRK13536 nodulation factor exp 100.0 1.3E-33 2.7E-38 253.6 13.6 170 75-254 39-218 (340)
18 COG1122 CbiO ABC-type cobalt t 100.0 1.7E-33 3.7E-38 239.7 12.8 171 76-254 2-184 (235)
19 PRK11650 ugpC glycerol-3-phosp 100.0 1.6E-33 3.5E-38 254.4 12.2 169 75-253 1-179 (356)
20 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-33 4.8E-38 252.0 12.7 172 77-254 1-186 (343)
21 PRK11432 fbpC ferric transport 100.0 3.2E-33 6.9E-38 251.9 12.7 170 74-253 3-181 (351)
22 TIGR00960 3a0501s02 Type II (G 100.0 3.2E-33 7E-38 236.1 11.4 169 77-253 1-183 (216)
23 TIGR03265 PhnT2 putative 2-ami 100.0 3.6E-33 7.9E-38 251.8 12.3 170 75-254 2-180 (353)
24 COG1117 PstB ABC-type phosphat 100.0 4.8E-33 1E-37 228.4 11.3 169 75-254 5-195 (253)
25 COG1118 CysA ABC-type sulfate/ 100.0 2.4E-33 5.2E-38 241.1 9.8 168 77-254 2-183 (345)
26 TIGR01288 nodI ATP-binding ABC 100.0 7E-33 1.5E-37 245.6 12.6 167 77-253 4-180 (303)
27 PRK11000 maltose/maltodextrin 100.0 6.9E-33 1.5E-37 251.6 12.7 169 75-253 1-178 (369)
28 COG4525 TauB ABC-type taurine 100.0 4.2E-33 9E-38 225.9 9.8 173 75-255 1-179 (259)
29 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.1E-33 1.3E-37 234.6 11.2 170 78-253 1-185 (218)
30 cd03265 ABC_DrrA DrrA is the A 100.0 8.3E-33 1.8E-37 234.3 11.8 166 78-253 1-176 (220)
31 cd03259 ABC_Carb_Solutes_like 100.0 6.4E-33 1.4E-37 233.8 11.0 166 78-253 1-175 (213)
32 PRK09452 potA putrescine/sperm 100.0 1E-32 2.3E-37 250.4 12.5 171 74-254 11-190 (375)
33 PRK11629 lolD lipoprotein tran 100.0 1.8E-32 4E-37 234.1 13.0 172 76-253 4-190 (233)
34 TIGR02673 FtsE cell division A 100.0 1.3E-32 2.8E-37 232.0 11.8 167 77-253 1-182 (214)
35 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-32 2.4E-37 233.5 11.1 170 78-253 1-176 (220)
36 COG1137 YhbG ABC-type (unclass 100.0 8.3E-34 1.8E-38 230.7 3.9 170 75-253 2-184 (243)
37 cd03269 ABC_putative_ATPase Th 100.0 1.7E-32 3.7E-37 230.7 11.6 166 78-253 1-173 (210)
38 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-32 3.4E-37 234.8 11.1 166 78-253 1-181 (235)
39 TIGR03522 GldA_ABC_ATP gliding 100.0 2.3E-32 5.1E-37 242.1 12.4 168 77-254 2-179 (301)
40 PRK11153 metN DL-methionine tr 100.0 2.4E-32 5.3E-37 245.9 12.5 172 77-254 1-186 (343)
41 PRK11248 tauB taurine transpor 100.0 2.4E-32 5.3E-37 236.6 11.9 168 77-254 1-174 (255)
42 cd03266 ABC_NatA_sodium_export 100.0 2.1E-32 4.6E-37 231.3 11.2 171 77-253 1-181 (218)
43 PRK10584 putative ABC transpor 100.0 4.8E-32 1E-36 230.7 13.4 173 75-253 4-191 (228)
44 TIGR03258 PhnT 2-aminoethylpho 100.0 2.4E-32 5.2E-37 247.0 12.0 167 77-253 5-182 (362)
45 cd03263 ABC_subfamily_A The AB 100.0 2.6E-32 5.5E-37 231.1 11.2 168 78-253 1-178 (220)
46 TIGR02211 LolD_lipo_ex lipopro 100.0 3.8E-32 8.1E-37 230.2 12.0 171 77-253 1-186 (221)
47 cd03301 ABC_MalK_N The N-termi 100.0 2.9E-32 6.4E-37 229.6 11.2 166 78-253 1-175 (213)
48 cd03258 ABC_MetN_methionine_tr 100.0 3.4E-32 7.4E-37 232.4 11.7 171 77-253 1-185 (233)
49 PRK11607 potG putrescine trans 100.0 4.4E-32 9.6E-37 246.5 13.1 170 74-253 16-194 (377)
50 PRK11022 dppD dipeptide transp 100.0 5.6E-32 1.2E-36 241.9 13.5 179 75-254 1-199 (326)
51 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.5E-32 9.8E-37 232.2 12.1 167 77-253 1-177 (236)
52 COG0410 LivF ABC-type branched 100.0 2.8E-32 6.1E-37 226.7 10.1 172 75-254 1-182 (237)
53 cd03296 ABC_CysA_sulfate_impor 100.0 5.1E-32 1.1E-36 232.2 12.0 167 77-253 2-181 (239)
54 PRK11264 putative amino-acid A 100.0 6.7E-32 1.5E-36 232.9 12.8 170 75-254 1-190 (250)
55 COG4152 ABC-type uncharacteriz 100.0 1.6E-32 3.4E-37 229.3 8.5 167 77-253 2-175 (300)
56 PRK09536 btuD corrinoid ABC tr 100.0 4.7E-32 1E-36 247.7 12.4 170 75-254 1-185 (402)
57 PRK10908 cell division protein 100.0 4.6E-32 9.9E-37 230.0 11.4 167 77-253 1-182 (222)
58 PRK13637 cbiO cobalt transport 100.0 7.3E-32 1.6E-36 237.4 13.0 172 77-254 2-190 (287)
59 cd03235 ABC_Metallic_Cations A 100.0 3.2E-32 7E-37 229.5 10.1 167 79-253 1-177 (213)
60 cd03226 ABC_cobalt_CbiO_domain 100.0 7E-32 1.5E-36 226.2 11.7 162 79-254 1-172 (205)
61 cd03225 ABC_cobalt_CbiO_domain 100.0 4.7E-32 1E-36 228.1 10.7 165 79-253 1-179 (211)
62 PRK11831 putative ABC transpor 100.0 8.4E-32 1.8E-36 234.9 12.6 169 75-253 5-188 (269)
63 cd03218 ABC_YhbG The ABC trans 100.0 7.1E-32 1.5E-36 230.1 11.9 167 78-254 1-179 (232)
64 cd03268 ABC_BcrA_bacitracin_re 100.0 8.5E-32 1.8E-36 226.1 11.9 162 78-253 1-171 (208)
65 PRK10851 sulfate/thiosulfate t 100.0 8.5E-32 1.9E-36 242.9 12.6 168 77-254 2-182 (353)
66 PRK11308 dppF dipeptide transp 100.0 1.4E-31 2.9E-36 239.5 13.5 176 75-254 3-200 (327)
67 cd03264 ABC_drug_resistance_li 100.0 7.7E-32 1.7E-36 226.9 11.3 166 78-254 1-176 (211)
68 PRK13538 cytochrome c biogenes 100.0 1.2E-31 2.7E-36 224.7 12.4 164 77-253 1-174 (204)
69 cd03292 ABC_FtsE_transporter F 100.0 8.3E-32 1.8E-36 227.0 11.4 167 78-253 1-181 (214)
70 TIGR03608 L_ocin_972_ABC putat 100.0 7.7E-32 1.7E-36 225.9 11.1 164 80-253 1-179 (206)
71 cd03262 ABC_HisP_GlnQ_permease 100.0 7.9E-32 1.7E-36 226.9 11.2 167 78-254 1-181 (213)
72 cd03257 ABC_NikE_OppD_transpor 100.0 1.5E-31 3.3E-36 227.4 12.8 173 77-253 1-190 (228)
73 PRK15079 oligopeptide ABC tran 100.0 1.4E-31 3.1E-36 239.6 13.0 176 75-254 6-207 (331)
74 PRK10070 glycine betaine trans 100.0 1.6E-31 3.5E-36 244.1 13.2 152 96-253 43-209 (400)
75 COG0411 LivG ABC-type branched 100.0 3E-32 6.6E-37 228.2 7.6 171 76-254 3-195 (250)
76 PRK13641 cbiO cobalt transport 100.0 1.5E-31 3.3E-36 235.3 12.5 171 77-253 2-190 (287)
77 PRK10895 lipopolysaccharide AB 100.0 1.2E-31 2.6E-36 230.1 11.5 169 75-253 1-182 (241)
78 PRK13634 cbiO cobalt transport 100.0 1.6E-31 3.5E-36 235.5 12.3 171 77-253 2-190 (290)
79 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.5E-31 3.3E-36 229.7 11.8 166 78-253 1-180 (242)
80 PRK13647 cbiO cobalt transport 100.0 1.6E-31 3.6E-36 233.7 11.9 170 76-254 3-184 (274)
81 PRK11124 artP arginine transpo 100.0 1.9E-31 4E-36 229.1 12.0 167 77-253 2-186 (242)
82 TIGR02315 ABC_phnC phosphonate 100.0 1E-31 2.2E-36 230.7 10.4 167 77-253 1-190 (243)
83 cd03219 ABC_Mj1267_LivG_branch 100.0 1.5E-31 3.3E-36 228.7 11.4 166 78-253 1-188 (236)
84 PRK13539 cytochrome c biogenes 100.0 2.7E-31 5.8E-36 223.2 12.5 163 77-253 2-172 (207)
85 cd03260 ABC_PstB_phosphate_tra 100.0 2E-31 4.4E-36 226.7 11.9 166 78-254 1-187 (227)
86 PRK13638 cbiO cobalt transport 100.0 1.5E-31 3.3E-36 233.5 11.4 168 77-254 1-182 (271)
87 PRK13650 cbiO cobalt transport 100.0 1.8E-31 4E-36 233.9 11.9 173 76-254 3-186 (279)
88 PRK13643 cbiO cobalt transport 100.0 1.7E-31 3.7E-36 235.2 11.6 172 77-254 1-190 (288)
89 TIGR01188 drrA daunorubicin re 100.0 1.2E-31 2.6E-36 237.7 10.7 159 85-253 1-169 (302)
90 cd03256 ABC_PhnC_transporter A 100.0 2.5E-31 5.4E-36 227.9 12.3 166 78-253 1-189 (241)
91 PRK13652 cbiO cobalt transport 100.0 3E-31 6.6E-36 232.3 12.9 170 75-253 1-182 (277)
92 cd03224 ABC_TM1139_LivF_branch 100.0 2.2E-31 4.7E-36 225.6 11.3 165 78-254 1-178 (222)
93 PRK09473 oppD oligopeptide tra 100.0 4.7E-31 1E-35 236.3 13.9 177 74-254 9-207 (330)
94 PRK15093 antimicrobial peptide 100.0 3.9E-31 8.6E-36 236.9 13.4 179 75-254 1-204 (330)
95 PRK13651 cobalt transporter AT 100.0 2.6E-31 5.6E-36 235.6 12.1 172 77-254 2-211 (305)
96 PRK09493 glnQ glutamine ABC tr 100.0 2.8E-31 6.1E-36 227.7 11.8 167 77-253 1-181 (240)
97 PRK14247 phosphate ABC transpo 100.0 4.3E-31 9.4E-36 227.9 13.0 173 75-254 1-192 (250)
98 PRK11247 ssuB aliphatic sulfon 100.0 3.1E-31 6.8E-36 229.8 12.1 162 76-253 11-178 (257)
99 TIGR00972 3a0107s01c2 phosphat 100.0 4.1E-31 8.9E-36 227.7 12.7 167 77-254 1-190 (247)
100 PRK11701 phnK phosphonate C-P 100.0 6.1E-31 1.3E-35 228.1 13.4 170 76-253 5-196 (258)
101 PRK13548 hmuV hemin importer A 100.0 4.5E-31 9.8E-36 229.0 12.4 167 77-253 2-185 (258)
102 TIGR02769 nickel_nikE nickel i 100.0 5.2E-31 1.1E-35 229.4 12.8 173 77-253 2-195 (265)
103 PRK10247 putative ABC transpor 100.0 9.1E-31 2E-35 222.7 13.9 165 76-253 6-182 (225)
104 TIGR03411 urea_trans_UrtD urea 100.0 5.9E-31 1.3E-35 225.9 12.7 168 76-253 1-188 (242)
105 PRK14267 phosphate ABC transpo 100.0 6E-31 1.3E-35 227.4 12.8 170 75-254 2-195 (253)
106 PRK13635 cbiO cobalt transport 100.0 4.6E-31 1E-35 231.4 12.3 171 76-253 4-185 (279)
107 PRK13636 cbiO cobalt transport 100.0 4.9E-31 1.1E-35 231.7 12.4 169 76-254 4-187 (283)
108 TIGR01189 ccmA heme ABC export 100.0 6.7E-31 1.5E-35 219.2 12.4 162 78-253 1-172 (198)
109 PRK13644 cbiO cobalt transport 100.0 4.1E-31 8.8E-36 231.2 11.3 169 77-253 1-181 (274)
110 PRK15112 antimicrobial peptide 100.0 6.5E-31 1.4E-35 229.1 12.6 174 76-253 3-194 (267)
111 PRK14268 phosphate ABC transpo 100.0 6.9E-31 1.5E-35 227.8 12.6 173 74-254 9-200 (258)
112 PRK14250 phosphate ABC transpo 100.0 6.5E-31 1.4E-35 225.8 12.2 164 75-253 1-176 (241)
113 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.8E-31 8.1E-36 230.8 10.9 165 79-253 26-205 (269)
114 COG1123 ATPase components of v 100.0 6.6E-31 1.4E-35 243.4 12.7 178 74-254 277-475 (539)
115 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-30 2.6E-35 221.5 13.3 171 77-253 1-194 (224)
116 PRK13646 cbiO cobalt transport 100.0 5.9E-31 1.3E-35 231.5 11.8 172 77-254 2-191 (286)
117 PRK13543 cytochrome c biogenes 100.0 2E-30 4.3E-35 219.0 14.3 165 76-253 10-182 (214)
118 TIGR03410 urea_trans_UrtE urea 100.0 5.6E-31 1.2E-35 224.4 11.0 163 78-253 1-176 (230)
119 PRK10619 histidine/lysine/argi 100.0 8.9E-31 1.9E-35 226.9 12.4 169 76-254 4-198 (257)
120 PRK14241 phosphate transporter 100.0 1.1E-30 2.4E-35 226.5 12.9 172 76-254 3-194 (258)
121 PRK14242 phosphate transporter 100.0 1.6E-30 3.5E-35 224.7 13.4 171 75-253 4-194 (253)
122 cd03231 ABC_CcmA_heme_exporter 100.0 1.1E-30 2.3E-35 218.6 11.8 160 78-253 1-170 (201)
123 COG4181 Predicted ABC-type tra 100.0 1.5E-30 3.3E-35 207.1 11.9 173 76-254 5-192 (228)
124 TIGR02323 CP_lyasePhnK phospho 100.0 1.5E-30 3.2E-35 224.9 13.0 170 76-253 2-193 (253)
125 PRK10419 nikE nickel transport 100.0 1.4E-30 3.1E-35 227.1 12.9 175 75-253 1-196 (268)
126 PRK13632 cbiO cobalt transport 100.0 1.1E-30 2.4E-35 228.0 12.1 170 76-253 6-187 (271)
127 PRK13633 cobalt transporter AT 100.0 1.1E-30 2.3E-35 229.2 11.9 173 76-254 3-190 (280)
128 PRK13631 cbiO cobalt transport 100.0 1.8E-30 3.8E-35 231.7 13.4 173 75-253 19-221 (320)
129 PRK13540 cytochrome c biogenes 100.0 2.6E-30 5.6E-35 216.1 13.5 162 77-253 1-172 (200)
130 TIGR03005 ectoine_ehuA ectoine 100.0 9.7E-31 2.1E-35 226.0 11.2 166 78-253 1-191 (252)
131 PRK14273 phosphate ABC transpo 100.0 1.7E-30 3.6E-35 224.8 12.7 169 75-254 5-196 (254)
132 PRK13649 cbiO cobalt transport 100.0 1.4E-30 2.9E-35 228.5 12.3 171 77-253 2-190 (280)
133 PRK11231 fecE iron-dicitrate t 100.0 1.2E-30 2.5E-35 225.9 11.7 167 77-253 2-183 (255)
134 TIGR01186 proV glycine betaine 100.0 9E-31 2E-35 236.5 11.4 160 85-254 1-175 (363)
135 COG0444 DppD ABC-type dipeptid 100.0 1.3E-30 2.7E-35 226.8 11.6 178 77-254 1-199 (316)
136 PRK14235 phosphate transporter 100.0 2.4E-30 5.2E-35 225.5 13.4 172 75-254 17-209 (267)
137 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-30 2.7E-35 219.5 11.1 164 78-253 1-173 (211)
138 COG3840 ThiQ ABC-type thiamine 100.0 5.5E-31 1.2E-35 211.4 8.5 166 77-254 1-175 (231)
139 PRK14262 phosphate ABC transpo 100.0 2E-30 4.4E-35 223.7 12.7 171 75-253 1-191 (250)
140 PRK10575 iron-hydroxamate tran 100.0 1.2E-30 2.7E-35 227.1 11.4 169 75-253 9-192 (265)
141 PRK10418 nikD nickel transport 100.0 3.6E-30 7.8E-35 222.8 14.1 166 77-253 4-185 (254)
142 PRK14270 phosphate ABC transpo 100.0 2.9E-30 6.4E-35 222.9 13.3 168 75-253 2-192 (251)
143 PRK09544 znuC high-affinity zi 100.0 2.6E-30 5.7E-35 223.4 13.0 160 76-253 3-165 (251)
144 PRK13639 cbiO cobalt transport 100.0 1.7E-30 3.6E-35 227.4 11.5 169 77-254 1-183 (275)
145 PRK13648 cbiO cobalt transport 100.0 2.5E-30 5.4E-35 225.6 12.4 171 75-253 5-187 (269)
146 PRK10744 pstB phosphate transp 100.0 3.2E-30 7E-35 223.8 12.8 172 75-254 11-202 (260)
147 PRK11300 livG leucine/isoleuci 100.0 2.5E-30 5.3E-35 223.7 12.1 169 76-253 4-198 (255)
148 TIGR01978 sufC FeS assembly AT 100.0 2.5E-30 5.3E-35 222.0 12.0 167 78-254 1-190 (243)
149 TIGR03740 galliderm_ABC gallid 100.0 3.2E-30 6.9E-35 218.9 12.5 162 78-253 1-169 (223)
150 TIGR01277 thiQ thiamine ABC tr 100.0 3E-30 6.5E-35 217.6 12.2 165 78-254 1-174 (213)
151 PRK10261 glutathione transport 100.0 2.5E-30 5.5E-35 249.3 13.3 177 74-254 9-214 (623)
152 PRK14274 phosphate ABC transpo 100.0 4.2E-30 9.1E-35 222.9 13.3 172 75-254 10-201 (259)
153 PRK14239 phosphate transporter 100.0 3.6E-30 7.9E-35 222.3 12.8 170 76-254 4-194 (252)
154 PRK11614 livF leucine/isoleuci 100.0 1.5E-30 3.2E-35 222.8 10.0 167 75-253 3-182 (237)
155 PRK10762 D-ribose transporter 100.0 1.6E-30 3.5E-35 245.1 11.1 168 76-253 3-186 (501)
156 PRK13645 cbiO cobalt transport 100.0 2.9E-30 6.2E-35 227.4 12.0 172 76-253 5-195 (289)
157 TIGR03415 ABC_choXWV_ATP choli 100.0 3.3E-30 7E-35 234.0 12.6 162 82-253 29-209 (382)
158 TIGR01166 cbiO cobalt transpor 100.0 2.1E-30 4.5E-35 214.9 10.3 152 96-253 7-172 (190)
159 PRK13549 xylose transporter AT 100.0 1.9E-30 4.2E-35 244.8 11.4 169 75-253 3-188 (506)
160 PRK14253 phosphate ABC transpo 100.0 5.1E-30 1.1E-34 221.1 13.1 169 75-254 1-191 (249)
161 PRK14245 phosphate ABC transpo 100.0 5.7E-30 1.2E-34 221.0 13.3 171 76-254 2-192 (250)
162 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.7E-30 3.8E-35 220.9 9.9 162 78-253 23-187 (224)
163 PRK10771 thiQ thiamine transpo 100.0 3.3E-30 7.2E-35 220.1 11.6 164 77-253 1-174 (232)
164 PRK09984 phosphonate/organopho 100.0 3.8E-30 8.3E-35 223.6 12.0 169 76-254 3-198 (262)
165 PRK14240 phosphate transporter 100.0 6.3E-30 1.4E-34 220.6 13.2 171 75-253 1-191 (250)
166 PRK14237 phosphate transporter 100.0 6.9E-30 1.5E-34 222.6 13.6 172 75-254 18-209 (267)
167 cd03267 ABC_NatA_like Similar 100.0 2.6E-30 5.5E-35 221.5 10.5 153 96-253 36-198 (236)
168 PRK14259 phosphate ABC transpo 100.0 4.9E-30 1.1E-34 223.8 12.5 169 76-253 12-199 (269)
169 cd03229 ABC_Class3 This class 100.0 1.6E-30 3.4E-35 213.6 8.7 145 78-254 1-146 (178)
170 PRK13541 cytochrome c biogenes 100.0 7.5E-30 1.6E-34 212.4 12.8 161 77-253 1-168 (195)
171 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-30 3.7E-35 217.6 9.0 157 76-253 2-163 (202)
172 PRK13640 cbiO cobalt transport 100.0 4E-30 8.7E-35 225.8 11.7 170 77-253 5-188 (282)
173 cd03300 ABC_PotA_N PotA is an 100.0 6.2E-30 1.3E-34 218.4 12.2 166 78-253 1-175 (232)
174 PRK10253 iron-enterobactin tra 100.0 3.5E-30 7.5E-35 224.2 10.8 169 75-253 5-188 (265)
175 PRK14269 phosphate ABC transpo 100.0 7.3E-30 1.6E-34 219.9 12.7 169 77-253 2-187 (246)
176 COG4608 AppF ABC-type oligopep 100.0 6.2E-30 1.3E-34 218.1 12.0 146 75-254 2-155 (268)
177 PRK15439 autoinducer 2 ABC tra 100.0 4.8E-30 1E-34 242.4 12.4 166 74-253 8-185 (510)
178 PRK14254 phosphate ABC transpo 100.0 8.8E-30 1.9E-34 223.9 13.3 171 75-254 37-226 (285)
179 PRK13642 cbiO cobalt transport 100.0 5.2E-30 1.1E-34 224.5 11.7 171 77-254 4-186 (277)
180 PRK14256 phosphate ABC transpo 100.0 1.3E-29 2.8E-34 219.0 13.8 172 76-254 3-194 (252)
181 PRK14249 phosphate ABC transpo 100.0 1.2E-29 2.7E-34 219.0 13.7 167 76-253 3-192 (251)
182 cd03230 ABC_DR_subfamily_A Thi 100.0 2.4E-30 5.2E-35 211.6 8.7 140 78-254 1-141 (173)
183 TIGR02982 heterocyst_DevA ABC 100.0 5.2E-30 1.1E-34 217.2 11.0 170 78-253 2-186 (220)
184 TIGR03873 F420-0_ABC_ATP propo 100.0 5.5E-30 1.2E-34 221.8 11.3 167 78-254 2-183 (256)
185 PRK14251 phosphate ABC transpo 100.0 1E-29 2.3E-34 219.4 12.8 171 76-254 3-193 (251)
186 TIGR00968 3a0106s01 sulfate AB 100.0 7.2E-30 1.6E-34 218.8 11.6 166 78-253 1-175 (237)
187 PRK09700 D-allose transporter 100.0 4.7E-30 1E-34 242.5 11.4 168 76-253 4-190 (510)
188 cd03228 ABCC_MRP_Like The MRP 100.0 6.1E-30 1.3E-34 208.8 10.5 140 78-253 1-141 (171)
189 PRK14260 phosphate ABC transpo 100.0 1.3E-29 2.8E-34 220.0 13.0 170 74-254 4-196 (259)
190 cd03246 ABCC_Protease_Secretio 100.0 6.2E-30 1.3E-34 209.1 10.4 140 78-253 1-141 (173)
191 PRK14272 phosphate ABC transpo 100.0 1.4E-29 3E-34 218.7 13.1 167 77-253 4-193 (252)
192 cd03214 ABC_Iron-Siderophores_ 100.0 6.5E-30 1.4E-34 210.3 10.4 139 79-253 1-142 (180)
193 PRK14243 phosphate transporter 100.0 1.6E-29 3.5E-34 219.9 13.4 170 76-254 9-197 (264)
194 PRK14248 phosphate ABC transpo 100.0 1.8E-29 3.8E-34 220.1 13.5 172 75-254 19-210 (268)
195 PRK15056 manganese/iron transp 100.0 1.1E-29 2.4E-34 221.9 12.1 170 77-253 6-187 (272)
196 PRK10261 glutathione transport 100.0 1.1E-29 2.4E-34 244.9 13.3 175 75-253 311-508 (623)
197 COG4175 ProV ABC-type proline/ 100.0 3.2E-30 6.9E-35 222.5 8.3 173 75-253 2-209 (386)
198 PRK14265 phosphate ABC transpo 100.0 1.9E-29 4E-34 220.7 13.2 175 71-254 14-207 (274)
199 cd03297 ABC_ModC_molybdenum_tr 100.0 1.1E-29 2.4E-34 214.3 11.4 157 82-253 5-176 (214)
200 COG4598 HisP ABC-type histidin 100.0 8E-30 1.7E-34 204.5 9.8 161 75-253 4-197 (256)
201 PRK11144 modC molybdate transp 100.0 1.3E-29 2.8E-34 228.9 12.5 158 77-253 1-173 (352)
202 cd03215 ABC_Carb_Monos_II This 100.0 5.3E-30 1.1E-34 211.2 9.1 143 76-253 3-149 (182)
203 PRK14261 phosphate ABC transpo 100.0 1.8E-29 3.9E-34 218.2 12.8 172 75-254 4-195 (253)
204 cd03299 ABC_ModC_like Archeal 100.0 1.2E-29 2.7E-34 217.0 11.7 165 78-253 1-174 (235)
205 cd03247 ABCC_cytochrome_bd The 100.0 6.4E-30 1.4E-34 209.9 9.4 142 78-253 1-143 (178)
206 cd03216 ABC_Carb_Monos_I This 100.0 6.8E-30 1.5E-34 207.0 9.2 127 78-253 1-127 (163)
207 PRK15134 microcin C ABC transp 100.0 1.6E-29 3.4E-34 239.8 12.9 174 76-253 4-201 (529)
208 PRK14255 phosphate ABC transpo 100.0 3.2E-29 6.8E-34 216.5 13.5 170 76-254 4-194 (252)
209 PRK14258 phosphate ABC transpo 100.0 3E-29 6.5E-34 217.9 13.4 168 75-253 5-195 (261)
210 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-29 3.4E-34 239.4 12.6 167 78-253 1-213 (520)
211 PRK14238 phosphate transporter 100.0 2.6E-29 5.6E-34 219.5 12.9 171 76-254 23-213 (271)
212 PRK14246 phosphate ABC transpo 100.0 2.4E-29 5.3E-34 218.0 12.6 170 75-254 8-199 (257)
213 PRK11288 araG L-arabinose tran 100.0 1.1E-29 2.4E-34 239.5 11.2 168 76-253 3-185 (501)
214 PRK14236 phosphate transporter 100.0 4.1E-29 8.9E-34 218.3 14.0 173 74-254 22-214 (272)
215 PRK13547 hmuV hemin importer A 100.0 1.4E-29 3E-34 221.2 11.0 167 77-253 1-199 (272)
216 PRK14275 phosphate ABC transpo 100.0 2.8E-29 6.1E-34 220.8 12.8 172 74-253 36-227 (286)
217 TIGR02142 modC_ABC molybdenum 100.0 2.2E-29 4.7E-34 227.7 12.2 159 82-254 4-177 (354)
218 PRK10938 putative molybdenum t 100.0 3.4E-29 7.4E-34 235.5 14.0 163 76-254 2-181 (490)
219 COG1123 ATPase components of v 100.0 3.1E-29 6.8E-34 232.3 12.7 179 76-254 4-200 (539)
220 cd03223 ABCD_peroxisomal_ALDP 100.0 2.3E-29 5E-34 204.5 10.5 135 78-253 1-136 (166)
221 PRK14271 phosphate ABC transpo 100.0 3.5E-29 7.6E-34 219.2 12.3 169 75-254 19-209 (276)
222 cd03232 ABC_PDR_domain2 The pl 100.0 1E-29 2.3E-34 211.2 8.4 151 76-253 2-153 (192)
223 CHL00131 ycf16 sulfate ABC tra 100.0 8.1E-29 1.8E-33 213.9 13.8 170 76-254 6-197 (252)
224 cd03245 ABCC_bacteriocin_expor 100.0 1.7E-29 3.6E-34 213.8 9.3 162 78-254 3-186 (220)
225 cd03213 ABCG_EPDR ABCG transpo 100.0 4.2E-29 9E-34 207.9 11.2 150 77-254 3-157 (194)
226 PRK14252 phosphate ABC transpo 100.0 8.5E-29 1.8E-33 215.5 13.6 171 72-253 11-206 (265)
227 PRK15134 microcin C ABC transp 100.0 3.2E-29 7E-34 237.7 11.8 173 76-253 274-470 (529)
228 TIGR03269 met_CoM_red_A2 methy 100.0 4.7E-29 1E-33 236.1 12.7 172 75-253 277-472 (520)
229 TIGR02770 nickel_nikD nickel i 100.0 3.8E-29 8.3E-34 213.3 10.7 154 96-253 1-170 (230)
230 TIGR02633 xylG D-xylose ABC tr 100.0 3.6E-29 7.7E-34 235.9 11.3 167 77-253 1-186 (500)
231 PRK11819 putative ABC transpor 100.0 9.4E-29 2E-33 235.8 14.2 166 75-253 4-208 (556)
232 PRK09580 sufC cysteine desulfu 100.0 1.3E-28 2.7E-33 212.1 13.4 167 77-253 1-190 (248)
233 cd03248 ABCC_TAP TAP, the Tran 100.0 1.9E-29 4.2E-34 214.4 8.1 168 74-253 8-195 (226)
234 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.2E-29 7E-34 209.5 9.2 148 78-253 1-149 (200)
235 PRK14266 phosphate ABC transpo 100.0 1.2E-28 2.6E-33 212.6 12.9 171 75-253 1-191 (250)
236 cd03244 ABCC_MRP_domain2 Domai 100.0 1.3E-28 2.7E-33 208.6 12.7 161 78-254 3-185 (221)
237 COG4161 ArtP ABC-type arginine 100.0 1.1E-28 2.4E-33 195.0 11.3 168 77-254 2-187 (242)
238 PRK14263 phosphate ABC transpo 100.0 1.4E-28 3E-33 213.8 13.0 168 75-254 6-195 (261)
239 cd03252 ABCC_Hemolysin The ABC 100.0 1.5E-29 3.3E-34 216.5 6.9 162 78-254 1-184 (237)
240 PRK15064 ABC transporter ATP-b 100.0 1E-28 2.2E-33 234.3 13.1 162 76-253 318-483 (530)
241 PRK13546 teichoic acids export 100.0 1.8E-28 3.9E-33 213.3 13.2 166 77-253 4-188 (264)
242 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-28 3E-33 209.4 12.2 161 78-254 3-185 (229)
243 cd03234 ABCG_White The White s 100.0 1.7E-28 3.7E-33 208.7 12.7 174 77-253 3-188 (226)
244 COG4604 CeuD ABC-type enteroch 100.0 2.5E-29 5.3E-34 204.2 7.0 169 77-254 1-181 (252)
245 cd03250 ABCC_MRP_domain1 Domai 100.0 2.3E-28 4.9E-33 204.8 12.8 156 78-252 1-172 (204)
246 PRK13549 xylose transporter AT 100.0 8.5E-29 1.8E-33 233.7 11.4 173 76-253 258-450 (506)
247 TIGR01184 ntrCD nitrate transp 100.0 7.8E-29 1.7E-33 211.5 10.1 151 97-253 1-159 (230)
248 TIGR01257 rim_protein retinal- 100.0 9.1E-29 2E-33 258.1 12.5 171 76-254 1936-2116(2272)
249 PRK14244 phosphate ABC transpo 100.0 1.4E-28 3.1E-33 212.3 11.7 168 78-253 6-194 (251)
250 PRK14264 phosphate ABC transpo 100.0 3.7E-28 8E-33 215.6 14.5 173 74-254 42-246 (305)
251 PRK15064 ABC transporter ATP-b 100.0 1.8E-28 3.8E-33 232.7 13.2 164 77-253 1-200 (530)
252 PRK09700 D-allose transporter 100.0 8.9E-29 1.9E-33 233.7 11.1 168 76-253 264-454 (510)
253 PRK10982 galactose/methyl gala 100.0 6.9E-29 1.5E-33 233.5 10.3 164 80-253 1-179 (491)
254 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.5E-28 9.7E-33 203.4 14.1 158 76-254 5-171 (207)
255 COG4619 ABC-type uncharacteriz 100.0 3.2E-29 7E-34 198.9 6.4 166 77-254 3-179 (223)
256 cd03251 ABCC_MsbA MsbA is an e 100.0 3.4E-29 7.3E-34 213.9 7.1 162 78-254 1-184 (234)
257 PRK13545 tagH teichoic acids e 100.0 1.5E-28 3.2E-33 228.5 11.8 166 76-253 20-188 (549)
258 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-28 4.7E-33 233.1 12.8 166 75-253 320-488 (552)
259 PRK11819 putative ABC transpor 100.0 2.9E-28 6.2E-33 232.4 13.1 165 76-253 323-490 (556)
260 PRK10938 putative molybdenum t 100.0 1.2E-28 2.6E-33 231.8 9.9 172 75-254 258-447 (490)
261 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5E-28 1.1E-32 230.6 14.0 165 76-253 3-206 (552)
262 COG1119 ModF ABC-type molybden 100.0 5.6E-28 1.2E-32 202.7 12.2 171 74-254 28-217 (257)
263 TIGR02633 xylG D-xylose ABC tr 100.0 1.7E-28 3.8E-33 231.3 10.4 172 76-254 256-449 (500)
264 TIGR01257 rim_protein retinal- 100.0 3.3E-28 7.1E-33 254.0 13.1 171 75-253 926-1106(2272)
265 PRK11147 ABC transporter ATPas 100.0 6.7E-28 1.4E-32 233.1 14.1 166 75-253 1-201 (635)
266 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.5E-28 7.6E-33 193.1 9.8 114 78-253 1-115 (144)
267 COG2274 SunT ABC-type bacterio 100.0 4.9E-28 1.1E-32 233.9 12.3 163 77-254 471-655 (709)
268 COG4133 CcmA ABC-type transpor 100.0 7.1E-28 1.5E-32 194.4 11.1 168 77-254 2-176 (209)
269 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.9E-28 1.5E-32 206.4 11.7 163 78-254 1-185 (238)
270 COG4586 ABC-type uncharacteriz 100.0 3.7E-28 8.1E-33 206.0 9.8 156 93-253 36-201 (325)
271 COG1129 MglA ABC-type sugar tr 99.9 3.6E-28 7.9E-33 223.8 10.3 170 75-253 6-190 (500)
272 PRK10636 putative ABC transpor 99.9 8.9E-28 1.9E-32 232.1 13.5 163 77-253 1-194 (638)
273 KOG0058 Peptide exporter, ABC 99.9 7.4E-28 1.6E-32 226.8 12.5 164 76-253 464-649 (716)
274 cd03253 ABCC_ATM1_transporter 99.9 7.1E-28 1.5E-32 206.0 11.1 160 78-253 1-182 (236)
275 TIGR02868 CydC thiol reductant 99.9 6.4E-28 1.4E-32 228.8 11.9 161 77-253 334-515 (529)
276 PRK10636 putative ABC transpor 99.9 6.2E-28 1.3E-32 233.2 11.5 162 75-253 310-475 (638)
277 COG4107 PhnK ABC-type phosphon 99.9 1.4E-27 3.1E-32 190.7 11.2 171 75-253 4-196 (258)
278 COG1134 TagH ABC-type polysacc 99.9 6.1E-28 1.3E-32 202.5 9.3 151 93-254 39-193 (249)
279 PRK14257 phosphate ABC transpo 99.9 1.8E-27 3.9E-32 213.0 13.0 172 76-253 79-270 (329)
280 PRK11147 ABC transporter ATPas 99.9 1.2E-27 2.6E-32 231.2 12.7 166 75-253 317-485 (635)
281 COG4778 PhnL ABC-type phosphon 99.9 6.2E-28 1.4E-32 192.0 8.6 172 77-254 4-198 (235)
282 PRK13409 putative ATPase RIL; 99.9 1.9E-27 4E-32 227.5 13.2 158 75-253 338-498 (590)
283 cd03290 ABCC_SUR1_N The SUR do 99.9 3.9E-27 8.5E-32 199.2 13.7 154 79-249 2-181 (218)
284 PRK03695 vitamin B12-transport 99.9 1E-27 2.3E-32 206.8 9.7 160 79-254 2-179 (248)
285 COG3845 ABC-type uncharacteriz 99.9 1.9E-27 4.1E-32 215.7 11.1 169 75-253 2-185 (501)
286 cd03288 ABCC_SUR2 The SUR doma 99.9 5E-27 1.1E-31 203.5 13.0 164 74-253 16-201 (257)
287 cd03289 ABCC_CFTR2 The CFTR su 99.9 4.7E-27 1E-31 205.4 12.9 160 78-254 3-184 (275)
288 PRK10535 macrolide transporter 99.9 4.2E-27 9.1E-32 227.8 13.9 173 76-254 3-190 (648)
289 PRK11176 lipid transporter ATP 99.9 3.3E-27 7.1E-32 226.3 12.6 163 77-253 341-525 (582)
290 PRK10982 galactose/methyl gala 99.9 2.5E-27 5.5E-32 222.9 11.0 167 76-253 249-436 (491)
291 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 4.3E-27 9.3E-32 229.5 13.0 161 77-253 451-633 (686)
292 COG4559 ABC-type hemin transpo 99.9 3.1E-27 6.6E-32 194.0 9.9 167 77-253 1-186 (259)
293 PLN03211 ABC transporter G-25; 99.9 3E-27 6.4E-32 228.7 11.4 164 79-253 70-251 (659)
294 KOG0055 Multidrug/pheromone ex 99.9 4.3E-27 9.2E-32 232.6 12.6 165 76-254 349-535 (1228)
295 PRK10762 D-ribose transporter 99.9 3.3E-27 7.2E-32 222.6 11.1 165 76-253 256-440 (501)
296 cd03222 ABC_RNaseL_inhibitor T 99.9 3E-27 6.5E-32 193.7 9.3 113 81-253 4-116 (177)
297 cd03237 ABC_RNaseL_inhibitor_d 99.9 6.6E-27 1.4E-31 201.6 11.7 144 97-254 10-161 (246)
298 PRK11288 araG L-arabinose tran 99.9 3.6E-27 7.9E-32 222.4 10.6 166 76-253 256-441 (501)
299 COG4167 SapF ABC-type antimicr 99.9 3.8E-27 8.2E-32 189.6 8.9 177 75-254 2-195 (267)
300 PRK15177 Vi polysaccharide exp 99.9 3.4E-27 7.3E-32 199.2 8.7 143 96-252 2-148 (213)
301 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.5E-26 3.2E-31 226.6 13.5 162 77-253 477-660 (710)
302 PLN03073 ABC transporter F fam 99.9 2.7E-26 5.9E-31 223.4 15.1 162 76-253 507-672 (718)
303 PRK11160 cysteine/glutathione 99.9 6.9E-27 1.5E-31 223.7 10.4 164 76-254 337-521 (574)
304 TIGR01193 bacteriocin_ABC ABC- 99.9 1E-26 2.3E-31 227.5 11.9 162 77-253 473-656 (708)
305 PRK15439 autoinducer 2 ABC tra 99.9 1.1E-26 2.4E-31 219.5 11.5 164 76-253 267-448 (510)
306 COG4172 ABC-type uncharacteriz 99.9 2.3E-26 5E-31 204.1 12.8 177 74-254 273-472 (534)
307 TIGR02857 CydD thiol reductant 99.9 1.7E-26 3.6E-31 219.1 12.5 162 77-253 320-503 (529)
308 TIGR03771 anch_rpt_ABC anchore 99.9 1.6E-26 3.5E-31 196.3 10.8 148 102-253 1-158 (223)
309 PRK10790 putative multidrug tr 99.9 2.4E-26 5.2E-31 220.8 13.1 160 77-253 340-521 (592)
310 PRK11174 cysteine/glutathione 99.9 3.3E-26 7.1E-31 219.7 13.9 160 77-253 349-530 (588)
311 PRK10522 multidrug transporter 99.9 1.8E-26 3.9E-31 219.8 11.9 156 77-252 322-493 (547)
312 TIGR00954 3a01203 Peroxysomal 99.9 1.8E-26 3.9E-31 223.7 12.0 165 76-253 450-627 (659)
313 TIGR02203 MsbA_lipidA lipid A 99.9 2.2E-26 4.8E-31 220.0 12.4 163 77-253 330-514 (571)
314 TIGR03375 type_I_sec_LssB type 99.9 3.9E-26 8.4E-31 223.0 13.3 162 77-253 463-646 (694)
315 COG0488 Uup ATPase components 99.9 5.4E-26 1.2E-30 213.4 13.3 165 75-252 1-197 (530)
316 PRK13657 cyclic beta-1,2-gluca 99.9 6.5E-26 1.4E-30 217.7 13.6 161 77-253 334-516 (588)
317 TIGR01842 type_I_sec_PrtD type 99.9 5.3E-26 1.1E-30 216.4 12.7 162 77-253 316-499 (544)
318 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.8E-26 8.2E-31 183.7 9.7 123 80-253 2-125 (157)
319 TIGR00958 3a01208 Conjugate Tr 99.9 6.6E-26 1.4E-30 221.8 13.3 160 76-249 477-658 (711)
320 TIGR01192 chvA glucan exporter 99.9 6.3E-26 1.4E-30 217.6 12.9 161 77-253 334-516 (585)
321 COG4172 ABC-type uncharacteriz 99.9 8.2E-26 1.8E-30 200.6 12.4 176 75-254 4-203 (534)
322 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.1E-25 2.4E-30 197.4 13.2 152 75-251 37-202 (282)
323 COG4987 CydC ABC-type transpor 99.9 1E-25 2.2E-30 206.2 13.3 164 77-254 336-520 (573)
324 cd03236 ABC_RNaseL_inhibitor_d 99.9 7.7E-26 1.7E-30 195.8 11.4 157 81-253 4-184 (255)
325 TIGR01194 cyc_pep_trnsptr cycl 99.9 7.4E-26 1.6E-30 215.9 11.7 160 76-251 336-513 (555)
326 KOG0057 Mitochondrial Fe/S clu 99.9 9.6E-26 2.1E-30 206.6 11.8 160 77-253 351-532 (591)
327 COG4988 CydD ABC-type transpor 99.9 1.7E-25 3.6E-30 207.1 13.5 161 78-253 321-501 (559)
328 TIGR02204 MsbA_rel ABC transpo 99.9 1.9E-25 4.1E-30 213.8 13.3 164 76-253 336-521 (576)
329 PRK10789 putative multidrug tr 99.9 2.2E-25 4.7E-30 213.3 13.3 162 77-253 313-496 (569)
330 TIGR01846 type_I_sec_HlyB type 99.9 1.9E-25 4.1E-30 218.2 13.1 162 77-253 455-638 (694)
331 COG1132 MdlB ABC-type multidru 99.9 1.9E-26 4.2E-31 220.4 6.0 160 77-253 328-510 (567)
332 COG4148 ModC ABC-type molybdat 99.9 8.6E-26 1.9E-30 192.2 8.9 154 82-253 5-173 (352)
333 TIGR00956 3a01205 Pleiotropic 99.9 1.7E-25 3.7E-30 231.2 12.8 175 76-254 758-948 (1394)
334 COG4674 Uncharacterized ABC-ty 99.9 5.3E-26 1.2E-30 184.6 6.8 168 76-253 4-192 (249)
335 PLN03073 ABC transporter F fam 99.9 2.7E-25 5.9E-30 216.4 12.6 161 74-253 174-389 (718)
336 cd03238 ABC_UvrA The excision 99.9 3.5E-25 7.5E-30 181.4 10.8 120 96-253 10-134 (176)
337 PTZ00265 multidrug resistance 99.9 4.7E-25 1E-29 228.3 13.4 169 77-253 382-624 (1466)
338 PRK13409 putative ATPase RIL; 99.9 2.5E-25 5.4E-30 212.9 10.4 156 82-254 78-258 (590)
339 KOG0055 Multidrug/pheromone ex 99.9 8.9E-25 1.9E-29 216.3 12.8 164 77-254 987-1172(1228)
340 COG0488 Uup ATPase components 99.9 5.9E-25 1.3E-29 206.4 11.0 163 75-253 319-484 (530)
341 PTZ00265 multidrug resistance 99.9 6.7E-25 1.5E-29 227.2 12.1 163 77-253 1165-1403(1466)
342 COG0396 sufC Cysteine desulfur 99.9 1.7E-24 3.6E-29 180.0 12.0 171 75-253 1-189 (251)
343 COG4136 ABC-type uncharacteriz 99.9 5.1E-25 1.1E-29 172.2 8.4 168 77-252 2-178 (213)
344 PLN03232 ABC transporter C fam 99.9 2.5E-24 5.4E-29 224.2 13.7 161 77-253 1234-1416(1495)
345 KOG0059 Lipid exporter ABCA1 a 99.9 1.7E-24 3.7E-29 215.5 11.5 172 74-254 561-744 (885)
346 PLN03130 ABC transporter C fam 99.9 4.5E-24 9.8E-29 222.9 14.1 161 77-253 1237-1419(1622)
347 COG1101 PhnK ABC-type uncharac 99.9 7.4E-25 1.6E-29 180.4 6.2 174 77-254 1-194 (263)
348 TIGR01187 potA spermidine/putr 99.9 1.8E-24 3.8E-29 193.6 9.2 136 112-253 1-145 (325)
349 TIGR00955 3a01204 The Eye Pigm 99.9 3.6E-24 7.9E-29 206.4 10.9 152 96-254 40-212 (617)
350 PTZ00243 ABC transporter; Prov 99.9 9.5E-24 2E-28 220.1 14.2 161 77-253 1308-1491(1560)
351 PLN03140 ABC transporter G fam 99.9 8.9E-24 1.9E-28 218.4 12.8 173 77-254 867-1065(1470)
352 TIGR00957 MRP_assoc_pro multi 99.9 1.4E-23 3E-28 219.0 14.1 161 77-253 1284-1466(1522)
353 PF00005 ABC_tran: ABC transpo 99.9 1.4E-24 3E-29 170.2 4.4 122 97-237 1-137 (137)
354 TIGR01271 CFTR_protein cystic 99.9 3.6E-23 7.9E-28 215.3 13.3 161 77-254 1217-1399(1490)
355 cd03270 ABC_UvrA_I The excisio 99.9 6.8E-23 1.5E-27 174.5 12.2 156 96-253 10-184 (226)
356 PLN03140 ABC transporter G fam 99.9 4.7E-23 1E-27 213.1 13.1 155 94-254 178-382 (1470)
357 KOG0056 Heavy metal exporter H 99.9 1.3E-23 2.8E-28 190.4 7.0 162 77-254 537-720 (790)
358 COG4618 ArpD ABC-type protease 99.9 2.9E-23 6.4E-28 188.8 9.1 163 77-253 334-517 (580)
359 TIGR00956 3a01205 Pleiotropic 99.9 5.1E-23 1.1E-27 212.9 11.7 156 96-254 76-255 (1394)
360 KOG0061 Transporter, ABC super 99.9 9.5E-23 2.1E-27 195.7 12.2 173 78-254 26-216 (613)
361 PLN03232 ABC transporter C fam 99.9 1.2E-22 2.5E-27 211.8 13.5 155 77-249 614-781 (1495)
362 PLN03130 ABC transporter C fam 99.9 2E-22 4.4E-27 210.6 14.2 154 77-249 614-781 (1622)
363 TIGR00957 MRP_assoc_pro multi 99.9 1.4E-22 3.1E-27 211.4 12.5 155 77-252 636-804 (1522)
364 KOG0927 Predicted transporter 99.9 4.1E-22 8.8E-27 182.4 10.9 163 75-253 387-554 (614)
365 TIGR01271 CFTR_protein cystic 99.9 7.5E-22 1.6E-26 205.5 10.6 136 96-250 441-590 (1490)
366 cd03278 ABC_SMC_barmotin Barmo 99.9 9.1E-22 2E-26 164.2 7.2 131 98-254 14-163 (197)
367 PTZ00243 ABC transporter; Prov 99.8 4.2E-21 9.1E-26 200.4 11.1 136 96-249 675-823 (1560)
368 COG4178 ABC-type uncharacteriz 99.8 1.7E-20 3.7E-25 176.3 12.9 157 76-253 391-560 (604)
369 COG4615 PvdE ABC-type sideroph 99.8 1.9E-20 4.1E-25 166.2 11.1 156 76-251 321-491 (546)
370 cd03272 ABC_SMC3_euk Eukaryoti 99.8 8.7E-21 1.9E-25 162.8 8.4 52 203-254 153-208 (243)
371 COG5265 ATM1 ABC-type transpor 99.8 3.2E-20 7E-25 165.8 11.5 162 77-254 262-445 (497)
372 KOG0062 ATPase component of AB 99.8 2.3E-20 5.1E-25 170.1 9.5 157 77-252 80-242 (582)
373 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.1E-20 2.4E-25 159.3 3.3 157 77-254 5-177 (212)
374 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.9E-19 4E-24 155.6 10.6 145 107-254 25-216 (251)
375 cd03271 ABC_UvrA_II The excisi 99.8 3.5E-19 7.7E-24 154.3 12.3 65 190-254 148-218 (261)
376 KOG0054 Multidrug resistance-a 99.8 2.1E-19 4.6E-24 181.7 12.2 162 77-254 1138-1321(1381)
377 COG1245 Predicted ATPase, RNas 99.8 3E-19 6.5E-24 161.0 11.2 157 76-253 341-500 (591)
378 KOG0927 Predicted transporter 99.8 6.1E-20 1.3E-24 168.3 6.5 158 76-252 74-265 (614)
379 KOG0066 eIF2-interacting prote 99.8 6.8E-19 1.5E-23 158.2 11.2 162 75-253 584-749 (807)
380 cd03279 ABC_sbcCD SbcCD and ot 99.8 6.1E-19 1.3E-23 148.8 8.2 152 77-254 5-179 (213)
381 KOG0054 Multidrug resistance-a 99.8 1E-18 2.2E-23 176.8 10.9 156 75-250 516-685 (1381)
382 COG4170 SapD ABC-type antimicr 99.8 2.1E-18 4.5E-23 142.1 8.3 172 75-253 1-203 (330)
383 cd03240 ABC_Rad50 The catalyti 99.8 2.5E-18 5.3E-23 144.2 8.8 131 101-253 17-167 (204)
384 cd03276 ABC_SMC6_euk Eukaryoti 99.7 1.6E-17 3.5E-22 138.7 12.2 137 97-253 12-158 (198)
385 COG4138 BtuD ABC-type cobalami 99.7 1.6E-18 3.4E-23 139.0 5.4 160 76-254 2-178 (248)
386 KOG2355 Predicted ABC-type tra 99.7 1.4E-17 3.1E-22 136.7 10.2 171 76-253 12-192 (291)
387 KOG0060 Long-chain acyl-CoA tr 99.7 1.5E-17 3.2E-22 153.8 11.4 167 76-254 432-616 (659)
388 KOG0065 Pleiotropic drug resis 99.7 6.8E-18 1.5E-22 168.1 9.4 155 96-254 806-976 (1391)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.7 1.1E-17 2.3E-22 144.3 7.6 158 78-254 4-205 (247)
390 PRK00349 uvrA excinuclease ABC 99.7 3E-16 6.4E-21 156.2 13.0 65 190-254 809-879 (943)
391 KOG2702 Predicted panthothenat 99.7 8.4E-17 1.8E-21 133.9 7.4 146 104-255 116-263 (323)
392 COG1129 MglA ABC-type sugar tr 99.7 3.4E-16 7.5E-21 144.8 10.6 166 75-254 261-447 (500)
393 TIGR00630 uvra excinuclease AB 99.7 5.2E-16 1.1E-20 154.2 11.9 64 191-254 808-877 (924)
394 PRK00635 excinuclease ABC subu 99.6 6.6E-16 1.4E-20 160.2 11.8 62 193-254 791-858 (1809)
395 cd03280 ABC_MutS2 MutS2 homolo 99.6 7E-16 1.5E-20 128.9 5.5 113 97-252 17-135 (200)
396 COG2401 ABC-type ATPase fused 99.6 2.2E-15 4.7E-20 135.0 8.4 158 80-253 380-552 (593)
397 cd02025 PanK Pantothenate kina 99.6 1.4E-15 3E-20 129.0 6.8 130 109-254 1-132 (220)
398 COG1245 Predicted ATPase, RNas 99.6 3.6E-16 7.9E-21 141.3 3.2 162 82-254 79-259 (591)
399 TIGR00554 panK_bact pantothena 99.6 1.9E-15 4.1E-20 132.6 6.9 135 105-255 60-201 (290)
400 KOG0062 ATPase component of AB 99.6 4.1E-15 8.9E-20 136.1 8.7 162 75-252 360-526 (582)
401 KOG0064 Peroxisomal long-chain 99.6 3.5E-15 7.7E-20 136.9 6.6 161 77-252 481-656 (728)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.6 3.1E-14 6.7E-19 120.2 11.3 51 203-253 121-175 (213)
403 cd03239 ABC_SMC_head The struc 99.5 1.4E-14 3E-19 119.0 7.2 46 209-254 95-144 (178)
404 cd03227 ABC_Class2 ABC-type Cl 99.5 2.8E-14 6E-19 115.4 8.6 45 209-253 78-126 (162)
405 cd03283 ABC_MutS-like MutS-lik 99.5 1.3E-14 2.9E-19 121.2 5.9 34 96-131 16-49 (199)
406 KOG0066 eIF2-interacting prote 99.5 4.1E-14 8.9E-19 127.7 8.1 150 77-245 264-449 (807)
407 COG1072 CoaA Panthothenate kin 99.5 5.3E-14 1.2E-18 120.5 6.3 134 105-254 80-214 (283)
408 COG3845 ABC-type uncharacteriz 99.5 3.1E-13 6.8E-18 123.5 11.4 172 75-253 255-448 (501)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.5 3.8E-14 8.3E-19 120.3 4.6 109 96-246 19-132 (222)
410 cd03243 ABC_MutS_homologs The 99.5 2.6E-14 5.6E-19 119.6 3.2 109 99-249 21-131 (202)
411 COG0572 Udk Uridine kinase [Nu 99.5 2.5E-13 5.4E-18 113.5 8.7 125 105-253 6-130 (218)
412 PTZ00301 uridine kinase; Provi 99.5 1.8E-13 3.8E-18 115.2 7.8 127 108-254 4-130 (210)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.5 5.4E-14 1.2E-18 117.9 4.5 109 96-246 18-128 (204)
414 KOG0065 Pleiotropic drug resis 99.4 5.7E-13 1.2E-17 133.4 12.0 158 93-253 127-305 (1391)
415 cd02023 UMPK Uridine monophosp 99.4 3.3E-13 7.2E-18 112.4 8.3 113 109-241 1-113 (198)
416 PRK05439 pantothenate kinase; 99.4 1.9E-13 4.1E-18 120.9 5.7 133 106-254 85-220 (311)
417 cd03241 ABC_RecN RecN ATPase i 99.4 4.5E-13 9.8E-18 117.4 7.8 47 208-254 170-220 (276)
418 TIGR00235 udk uridine kinase. 99.4 3.8E-13 8.1E-18 113.0 6.7 118 104-241 3-120 (207)
419 PRK09270 nucleoside triphospha 99.4 5.4E-13 1.2E-17 113.8 6.6 133 104-254 30-164 (229)
420 PLN02796 D-glycerate 3-kinase 99.4 1.2E-12 2.6E-17 116.8 6.7 133 96-242 81-234 (347)
421 PRK05480 uridine/cytidine kina 99.3 4.8E-12 1E-16 106.3 9.5 117 105-241 4-120 (209)
422 KOG0063 RNAse L inhibitor, ABC 99.3 2.7E-12 6E-17 115.6 6.9 140 98-252 353-500 (592)
423 COG0178 UvrA Excinuclease ATPa 99.3 1.7E-11 3.8E-16 117.7 11.7 63 192-254 803-871 (935)
424 PRK00635 excinuclease ABC subu 99.3 1.6E-11 3.6E-16 128.0 10.8 66 189-254 1677-1748(1809)
425 cd03242 ABC_RecF RecF is a rec 99.3 9.8E-12 2.1E-16 108.6 6.5 47 207-253 182-237 (270)
426 PF00485 PRK: Phosphoribulokin 99.2 5.6E-13 1.2E-17 110.8 -2.0 127 109-254 1-130 (194)
427 PLN02318 phosphoribulokinase/u 99.2 1.6E-11 3.4E-16 115.8 6.7 117 106-254 64-180 (656)
428 TIGR01069 mutS2 MutS2 family p 99.2 1.7E-11 3.7E-16 120.7 5.3 115 99-252 313-429 (771)
429 PLN03046 D-glycerate 3-kinase; 99.2 4.5E-11 9.8E-16 108.7 7.2 122 107-242 212-346 (460)
430 smart00534 MUTSac ATPase domai 99.2 1.4E-11 3E-16 101.7 3.6 44 204-248 57-100 (185)
431 cd03284 ABC_MutS1 MutS1 homolo 99.2 6.5E-11 1.4E-15 100.2 7.7 35 96-131 20-54 (216)
432 cd03281 ABC_MSH5_euk MutS5 hom 99.2 6.9E-11 1.5E-15 99.8 7.6 41 212-252 94-135 (213)
433 cd02024 NRK1 Nicotinamide ribo 99.2 1.1E-10 2.3E-15 96.5 8.4 122 109-255 1-135 (187)
434 cd02028 UMPK_like Uridine mono 99.1 1E-10 2.2E-15 96.1 6.3 112 109-240 1-112 (179)
435 PF02463 SMC_N: RecF/RecN/SMC 99.1 1.7E-10 3.7E-15 97.4 7.7 62 189-254 121-186 (220)
436 PLN02348 phosphoribulokinase 99.1 1.3E-10 2.8E-15 105.3 6.6 121 106-241 48-177 (395)
437 cd02026 PRK Phosphoribulokinas 99.1 2.8E-10 6E-15 99.6 8.5 106 109-241 1-110 (273)
438 PRK08533 flagellar accessory p 99.0 1E-09 2.2E-14 93.7 8.5 131 78-252 8-147 (230)
439 PTZ00132 GTP-binding nuclear p 99.0 2.2E-10 4.7E-15 96.5 3.9 42 213-254 157-203 (215)
440 PRK07429 phosphoribulokinase; 99.0 1.5E-09 3.2E-14 97.2 9.4 116 107-253 8-127 (327)
441 cd03287 ABC_MSH3_euk MutS3 hom 99.0 8.2E-10 1.8E-14 93.7 6.9 36 96-131 20-55 (222)
442 TIGR02858 spore_III_AA stage I 99.0 7.4E-10 1.6E-14 96.6 5.8 25 108-132 112-136 (270)
443 cd00820 PEPCK_HprK Phosphoenol 99.0 6E-10 1.3E-14 83.5 3.8 33 96-128 4-36 (107)
444 PRK00409 recombination and DNA 98.9 6E-10 1.3E-14 110.1 4.4 112 98-249 319-430 (782)
445 cd02029 PRK_like Phosphoribulo 98.9 6.3E-09 1.4E-13 89.9 9.0 128 109-253 1-143 (277)
446 TIGR03238 dnd_assoc_3 dnd syst 98.9 8.1E-10 1.8E-14 102.1 3.3 39 96-139 21-59 (504)
447 COG4240 Predicted kinase [Gene 98.9 2.9E-09 6.4E-14 89.1 5.9 125 104-241 47-177 (300)
448 PRK06995 flhF flagellar biosyn 98.8 7.6E-09 1.7E-13 96.6 8.0 127 96-241 245-381 (484)
449 cd03286 ABC_MSH6_euk MutS6 hom 98.8 2.3E-09 4.9E-14 90.8 4.1 36 96-131 19-54 (218)
450 KOG0063 RNAse L inhibitor, ABC 98.8 1.3E-09 2.8E-14 98.6 2.8 142 105-253 98-258 (592)
451 PRK06793 fliI flagellum-specif 98.8 8E-09 1.7E-13 95.2 6.4 131 76-251 129-269 (432)
452 PRK15453 phosphoribulokinase; 98.8 2.8E-08 6.2E-13 86.5 8.6 120 106-239 4-136 (290)
453 COG3910 Predicted ATPase [Gene 98.7 8.7E-08 1.9E-12 78.2 8.6 134 102-254 33-174 (233)
454 TIGR00630 uvra excinuclease AB 98.7 2.2E-08 4.7E-13 100.3 6.2 63 192-254 468-535 (924)
455 PRK00349 uvrA excinuclease ABC 98.7 2.2E-08 4.8E-13 100.5 5.8 62 193-254 471-537 (943)
456 PRK07667 uridine kinase; Provi 98.7 3.9E-08 8.5E-13 81.7 6.2 107 106-237 16-130 (193)
457 cd01128 rho_factor Transcripti 98.6 1.6E-07 3.5E-12 81.0 9.0 33 100-132 9-41 (249)
458 smart00382 AAA ATPases associa 98.6 3E-07 6.6E-12 70.1 9.1 99 107-248 2-100 (148)
459 PRK06696 uridine kinase; Valid 98.6 9.7E-08 2.1E-12 81.0 5.5 109 106-238 21-139 (223)
460 TIGR02788 VirB11 P-type DNA tr 98.5 1.6E-07 3.6E-12 83.6 7.0 33 100-132 137-169 (308)
461 PRK13695 putative NTPase; Prov 98.5 2.7E-08 5.8E-13 81.1 1.8 45 207-251 77-123 (174)
462 PF13555 AAA_29: P-loop contai 98.5 1.8E-07 4E-12 63.0 4.3 35 98-132 13-48 (62)
463 PF13304 AAA_21: AAA domain; P 98.5 1.2E-07 2.7E-12 79.6 4.3 47 207-253 235-284 (303)
464 cd01130 VirB11-like_ATPase Typ 98.5 1E-07 2.3E-12 78.6 3.8 40 98-140 16-55 (186)
465 cd01124 KaiC KaiC is a circadi 98.5 6.3E-07 1.4E-11 73.3 8.3 51 203-253 66-125 (187)
466 PRK06067 flagellar accessory p 98.5 3.5E-07 7.6E-12 78.1 6.8 119 103-250 21-144 (234)
467 cd01120 RecA-like_NTPases RecA 98.4 6.7E-07 1.4E-11 70.8 7.4 24 109-132 1-24 (165)
468 PRK14721 flhF flagellar biosyn 98.4 7.1E-07 1.5E-11 82.3 8.4 95 104-217 188-284 (420)
469 PRK14722 flhF flagellar biosyn 98.4 1.6E-06 3.5E-11 78.8 9.7 38 94-131 124-161 (374)
470 cd01131 PilT Pilus retraction 98.4 1.3E-06 2.7E-11 72.9 8.3 24 109-132 3-26 (198)
471 PRK06002 fliI flagellum-specif 98.4 4.8E-07 1.1E-11 83.7 6.2 59 75-140 137-195 (450)
472 TIGR03015 pepcterm_ATPase puta 98.4 3.2E-06 6.9E-11 73.3 10.6 37 96-132 31-68 (269)
473 PRK14723 flhF flagellar biosyn 98.3 4.3E-06 9.2E-11 82.0 11.0 87 96-199 174-262 (767)
474 TIGR00767 rho transcription te 98.3 1.1E-06 2.3E-11 80.2 5.2 53 77-132 130-193 (415)
475 PRK10416 signal recognition pa 98.3 6.3E-06 1.4E-10 73.7 10.0 28 105-132 112-139 (318)
476 TIGR02903 spore_lon_C ATP-depe 98.3 7.2E-06 1.6E-10 79.6 11.1 116 106-253 174-291 (615)
477 PRK09825 idnK D-gluconate kina 98.3 7.7E-07 1.7E-11 72.9 3.8 27 106-132 2-28 (176)
478 PRK09862 putative ATP-dependen 98.2 8.1E-07 1.8E-11 83.7 4.1 54 80-140 187-240 (506)
479 PRK07196 fliI flagellum-specif 98.2 9.1E-07 2E-11 81.8 3.9 38 94-132 143-180 (434)
480 PRK10078 ribose 1,5-bisphospho 98.2 7.9E-07 1.7E-11 73.3 3.2 26 107-132 2-27 (186)
481 PRK08233 hypothetical protein; 98.2 7.7E-06 1.7E-10 66.5 9.0 26 106-131 2-27 (182)
482 KOG2878 Predicted kinase [Gene 98.2 2.7E-06 5.7E-11 70.3 5.9 119 108-242 32-167 (282)
483 cd01125 repA Hexameric Replica 98.2 9.7E-06 2.1E-10 69.4 9.0 25 107-131 1-25 (239)
484 TIGR01420 pilT_fam pilus retra 98.2 1.1E-05 2.3E-10 73.0 9.6 29 104-132 119-147 (343)
485 PRK07594 type III secretion sy 98.2 2E-06 4.2E-11 79.6 4.5 58 76-140 128-185 (433)
486 PRK00300 gmk guanylate kinase; 98.1 1.9E-06 4.1E-11 71.8 3.7 27 105-131 3-29 (205)
487 cd01136 ATPase_flagellum-secre 98.1 2.7E-06 5.8E-11 76.1 4.8 41 96-140 59-99 (326)
488 PRK06731 flhF flagellar biosyn 98.1 3.1E-05 6.6E-10 67.7 11.3 36 97-132 58-100 (270)
489 PHA02562 46 endonuclease subun 98.1 2.4E-06 5.2E-11 81.9 3.9 49 205-253 465-524 (562)
490 cd00009 AAA The AAA+ (ATPases 98.1 1.8E-05 3.9E-10 60.8 8.2 26 106-131 18-43 (151)
491 PRK08149 ATP synthase SpaL; Va 98.1 3.1E-06 6.8E-11 78.2 4.4 37 95-132 140-176 (428)
492 PRK07721 fliI flagellum-specif 98.1 3.4E-06 7.3E-11 78.4 4.4 36 96-132 148-183 (438)
493 PRK06547 hypothetical protein; 98.1 1.7E-05 3.7E-10 64.7 8.0 27 105-131 13-39 (172)
494 TIGR02322 phosphon_PhnN phosph 98.1 3.2E-06 6.9E-11 69.0 3.6 26 107-132 1-26 (179)
495 TIGR03263 guanyl_kin guanylate 98.0 3E-06 6.5E-11 69.1 3.1 25 107-131 1-25 (180)
496 PRK10246 exonuclease subunit S 98.0 3.9E-06 8.5E-11 86.0 4.4 54 201-254 942-1003(1047)
497 TIGR00618 sbcc exonuclease Sbc 98.0 4.3E-06 9.4E-11 85.8 4.7 53 202-254 944-1006(1042)
498 PRK05399 DNA mismatch repair p 98.0 7.7E-06 1.7E-10 82.1 6.2 34 97-131 598-631 (854)
499 PRK09099 type III secretion sy 98.0 6.4E-06 1.4E-10 76.4 4.7 43 94-140 151-193 (441)
500 TIGR02546 III_secr_ATP type II 98.0 6.6E-06 1.4E-10 76.3 4.6 41 96-140 135-175 (422)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-39 Score=268.34 Aligned_cols=169 Identities=18% Similarity=0.242 Sum_probs=140.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||+|.|++.+ +|++||++|++||+++|+||||||||||||||++|.. |++|+ .++|...
T Consensus 1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL 73 (240)
T ss_pred CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence 4799999999999976 8899999999999999999999999999999999998 99999 4666321
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
+...|. +++ .|.++. ++++.+|....... .+.+.+...+...++|+.+++. .+.|+.+|||||+|||+||||
T Consensus 74 ~~R~~vGm-VFQ-~fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 74 KLRRKVGM-VFQ-QFNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHhcCe-ecc-cccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 234565 333 344433 47888887665433 4566666777788899999887 567889999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|+++++||||++|||+...++.+.+.+.
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988653
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-39 Score=271.89 Aligned_cols=170 Identities=16% Similarity=0.221 Sum_probs=147.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCe
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV 151 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~ 151 (255)
.+++++++++.|+... +|+|+||+|.+||+++|+||||||||||||+|+|+++ |++|+ .++|+.. .++.
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 5789999999999844 8899999999999999999999999999999999998 99999 4666432 4566
Q ss_pred eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
+. ++++...++ .+++.+|..+.....+...........++++.+++. .+.++.+|||||||||++||||+.+|++
T Consensus 75 ~~-vFQ~~~LlP--W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 75 GY-VFQEDALLP--WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred EE-EeccCcccc--hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 66 666665443 379999998887777766655666889999999996 6789999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhC
Q 025256 230 VIVDGNYLFLDGGVWKDVSSMFDEKW 255 (255)
Q Consensus 230 lilDEp~~~LD~~~~~~l~~ll~~~~ 255 (255)
|+|||||+.||+..+..+.+.+..+|
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLW 177 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776
No 3
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.7e-37 Score=247.74 Aligned_cols=169 Identities=17% Similarity=0.107 Sum_probs=147.5
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC---------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------- 146 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~--------- 146 (255)
||+++||+|.|++.. .+|+||||+|++||++-|+||||||||||+|+|++..+ |++|+ .+++..
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 589999999998752 27899999999999999999999999999999999998 99999 455521
Q ss_pred --CCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhh
Q 025256 147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 147 --~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~ 222 (255)
.+...|. |++|...+.. .++.+|..+.....|.+.......+.++|+.+++.. +..+++|||||+|||+||||
T Consensus 75 P~LRR~IGv-VFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 75 PFLRRQIGV-VFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred chhhheeee-Eeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence 1345676 7787766554 789999999999999877777788999999999874 55678999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++.+|++||.||||..|||+...+++++|.+.
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999874
No 4
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-36 Score=255.37 Aligned_cols=172 Identities=16% Similarity=0.127 Sum_probs=140.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++||+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.+ |++|. .+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 46789999999765444668999999999999999999999999999999999998 99999 5666211
Q ss_pred ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--C-CCCCCCCccccchhhhh
Q 025256 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-VYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~-~~~~~lS~G~~qrv~~a 220 (255)
+...|. |+++...++. +++.||........+............+++.+++.. . .++.+|||||+|||++|
T Consensus 78 ~~~R~~~iGf-vFQ~~nLl~~--ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 78 AKLRRKKIGF-VFQNFNLLPD--LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHHhEEE-ECccCCCCCC--CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 234566 6666555443 899999887665655543334456678888888862 3 55779999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+.+|++|+.||||..||..+.++++++|.+.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999764
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-37 Score=257.51 Aligned_cols=168 Identities=16% Similarity=0.158 Sum_probs=146.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||+++||+|.|++.. +++++||+|++||+++++|||||||||+||||.+++. |++|+ .+++...
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999765 7899999999999999999999999999999999998 99999 4666432
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC----CCCCCCCCCccccchhhhhhhh
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~~a~~l 223 (255)
+...|+++.+-|.+.+ +++.+|+.......+...+.......++++.+++. .+.++.+|||||+|||.+||||
T Consensus 74 Rr~IGYviQqigLFPh---~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 74 RRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HHhhhhhhhhcccCCC---ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 4567887777776433 79999999888888876666667789999999986 4688899999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++|++||||++|||.+|+++.+.+.+.
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence 9999999999999999999999999887653
No 6
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=252.59 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=141.5
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
|++++++|+++.|+.......++++|||++.+||++||+|+||||||||+++|+|+.+ |++|+ .++|+...
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 4689999999999876544457899999999999999999999999999999999998 99999 57774322
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhh
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~ 222 (255)
.....+|++|.+.-.++..++.+.+.+.....|+.. ......++++.+++. .+.++.+|||||+||++||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 233456888877655544555544444443333322 223378999999998 578889999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++||+||||+.||...+.+++++|.+.
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l 187 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLEL 187 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764
No 7
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.7e-36 Score=263.40 Aligned_cols=170 Identities=17% Similarity=0.183 Sum_probs=144.8
Q ss_pred cceEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
+.+++++||+|.|+ ... +|++|||+|++|+++||+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 45789999999999 555 8899999999999999999999999999999999998 99999 4555221
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l 223 (255)
+...|. +..+... .+.+++.++..+....++.+...+...+.++++.+++.. +..+..||+|||||+.+|.||
T Consensus 75 ~~~~~igy-~~~~~~~--~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 75 KVRRRIGY-VPQEPSL--YPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred HHHhheEE-EccCCCC--CccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence 234566 5555442 334899999999888888755455678899999999986 677899999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|+++||||||+|||+..+.+++++|...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l 182 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLREL 182 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998753
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-36 Score=253.86 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=133.1
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----C
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----P 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~ 148 (255)
+++|+++|+++.|++.. +|+||||++++|++++|+||||||||||+|.|.|+++ |++|+ .+.+... .
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 67899999999999643 7899999999999999999999999999999999998 99999 3444321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHH-HhcCC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...|+ +++.-.....--+++.+.....+ ...++ +...+...+.++|+.+++. .+..+.+|||||+|||.+|||
T Consensus 75 ~~IgY-VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 75 LRIGY-VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CeEEE-cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 23554 66633111111134443322211 11222 2334567889999999987 678889999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++|+|||||+++|+.++.++.++|++.
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l 185 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL 185 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 9
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-36 Score=257.90 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=146.6
Q ss_pred eEEEccceeecccc-ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~-~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
||++++|+|.|... ...+.+++||||+|++|+++||+|.||||||||+|++.++.+ |++|+ .++|+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 58999999999873 234668999999999999999999999999999999999998 99999 5666321
Q ss_pred ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
+...|. |++.-..+. ..++.+|..+..+..+.+.+....++.++++.+++. .+.++.+|||||||||+|||
T Consensus 78 Lr~~R~~IGM-IFQhFnLLs--srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 78 LRQLRQKIGM-IFQHFNLLS--SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHHHhhccE-Eeccccccc--cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 345565 555433222 268999999999999988777778889999999997 46788899999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+.+|+||+.||+|+.|||...+.+.+++..+
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I 187 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDI 187 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-36 Score=265.65 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=146.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CC
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PP 149 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~ 149 (255)
|.+|+++||+|.|++.. +++++||+|++||+++|+||||||||||||+|+|+.. |++|+ .+++... +.
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 67899999999999854 6799999999999999999999999999999999998 99999 5777432 22
Q ss_pred --CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 150 --~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
+.+. |++ +|-++ +++++.+|+.+..+..+.+.+.....+.++.+.|++. .+.++.+|||||+|||++||||+.
T Consensus 74 ~R~iam-VFQ-~yALy-PhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 74 KRGIAM-VFQ-NYALY-PHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred HCCEEE-EeC-Ccccc-CCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 3333 444 44444 3589999999999999988888888899999999987 678889999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+++++|||++.||...+..++..|.+
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence 9999999999999999999888887755
No 11
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-35 Score=246.38 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=141.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
.++|++++|++.|++.. +++++||+|++||+++|+||||||||||||+|.|+++ |++|+ .++|...
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 46899999999999865 7799999999999999999999999999999999998 99999 4555321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (255)
+...|. +++.|-... .+++.||..+..+... +++....+.+..-++.+++. .+.++.+|||||++|++
T Consensus 79 ~~~~ir~r~Gv-lFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva 155 (263)
T COG1127 79 ELYEIRKRMGV-LFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA 155 (263)
T ss_pred HHHHHHhheeE-Eeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence 234676 677775433 3899999988665544 56655556667778888886 45788899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|||++.+|++|++||||+||||.....+-++|.+.
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L 191 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIREL 191 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999888888653
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=245.69 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=138.2
Q ss_pred ceEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------
Q 025256 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------ 147 (255)
Q Consensus 76 ~~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~------ 147 (255)
.+|+++||++.| ++.. +|++|||+|++||+|+|+||||||||||||+|+|+.. |++|++ +++...
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 579999999999 4433 8899999999999999999999999999999999998 999994 554211
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHH--------HHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCcc
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKE--------AHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHG 212 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~--------~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G 212 (255)
+.+.|. |+++...+.+ +++.+|... ++..++++...+.....+.|+.+++.. ..+...||||
T Consensus 75 ~lr~~r~~iGm-IfQ~~nLv~r--~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG 151 (258)
T COG3638 75 ELRKLRRDIGM-IFQQFNLVPR--LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG 151 (258)
T ss_pred HHHHHHHhcee-EeccCCcccc--cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence 345676 6665554443 566555433 344567666667777889999999874 4567799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+|||+|||+|+.+|++|+.|||++.|||.+.+.++++|...
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-35 Score=261.85 Aligned_cols=169 Identities=15% Similarity=0.182 Sum_probs=140.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
++.++++||+|.|++.. +++|+||+|++||+++|+||||||||||||+|+|+.+ |++|+ .++|...
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 46899999999999765 8899999999999999999999999999999999998 99999 4666432
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
+...|. |+++. -++ +++++.+|+.+..+.... ..+.....+.+.++.+++. .+.++.+|||||+|||++||||+
T Consensus 76 kR~ig~-VFQ~Y-ALF-PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 76 KRPIGM-VFQSY-ALF-PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred hcccce-eecCc-ccC-CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 234554 55544 333 359999999998874443 3333456788999998887 57788899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++|+||||++.||...+++++.-+.+
T Consensus 153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~ 181 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKLREQMRKELKE 181 (352)
T ss_pred cCcchhhhcCcccchhHHHHHHHHHHHHH
Confidence 99999999999999999998888877654
No 14
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=239.73 Aligned_cols=168 Identities=17% Similarity=0.171 Sum_probs=141.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC-------CC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------KP 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~-------~~ 148 (255)
|+++.+++|+|+... .+++||||++++|+++||+|||||||||+||+|++++. |++|. .+++-. ++
T Consensus 1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 589999999999743 37899999999999999999999999999999999998 99999 455521 13
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...|.. . +..-++ ..+++.||+.++...+++..........++.+.+++. .+.++..||.||||||++||||+++
T Consensus 75 r~IGVl-~-~e~glY-~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 75 RKIGVL-F-GERGLY-ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred hhccee-c-CCcChh-hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 445653 3 332222 3489999999999999886655566778888888876 5778899999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+|||++|||.-.++.+.+++.+
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.9e-34 Score=246.60 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=132.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+++++||++.|++.. +++|+||++++|++++|+||||||||||||+|+|+++ |.+|+ .++|+...
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 689999999999754 7799999999999999999999999999999999998 99999 46664321
Q ss_pred -CCeeEEEecCCCCCcCccCCcccChHHHHHh-cCC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
...+. +++..... ..+++.+.....+.- .+. +...|...+...++.+++. ....+.+||||||||+.+|+
T Consensus 75 Ak~ia~-vpQ~~~~~--~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 75 AKKLAY-VPQSPSAP--FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred hhhEEE-eccCCCCC--CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 13343 66654322 236776655444322 222 2233444677888888876 56778999999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+.+|++|++||||+.||..++.++++++.+.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l 184 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753
No 16
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=8.7e-34 Score=251.64 Aligned_cols=168 Identities=16% Similarity=0.116 Sum_probs=135.1
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
++++++||+|.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 6 ~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 6 APIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred ceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHH
Confidence 5799999999998644 7899999999999999999999999999999999998 99999 4555321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
+...|. ++++.... ..+++.++..+....++...........++++.+++. .+..+..||+||+||+++|+||+.
T Consensus 79 ~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 79 RQRVGV-VPQFDNLD--PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HhcEEE-EeccCcCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 123455 55554322 2378888877655555543222234556788888776 366778999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+.+++++++++.+
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~ 183 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRS 183 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999876
No 17
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.3e-33 Score=253.64 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=134.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
+++|+++||+|.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence 56899999999998754 7899999999999999999999999999999999998 99999 4565321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....|. ++++.... ..+++.++..+....++...........++++.+++. .+.++..||+||+||+++|++|+
T Consensus 112 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 112 ARARIGV-VPQFDNLD--LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred HhccEEE-EeCCccCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 223454 55543322 2367777776654444432222233456778888876 56778899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++||+||||++||+.++++++++|.+.
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l 218 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSL 218 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999763
No 18
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=239.72 Aligned_cols=171 Identities=14% Similarity=0.097 Sum_probs=143.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC--------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------- 146 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~-------- 146 (255)
++++++++++.|++. ..+++++||+|++|++++|+|+||||||||+++|+|++. |++|. .+++..
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 578999999999875 227899999999999999999999999999999999998 99999 455532
Q ss_pred -CCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 147 -KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 147 -~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
.+...|. +.++...... .-++.+++.+...+.+++.+.....+.++++.+++. .+..+..|||||||||++|.+|
T Consensus 76 ~~~~~vG~-VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 76 ELRQKVGL-VFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HhhcceEE-EEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 1355676 5666533322 147778888888888887665667788999998886 5677789999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||++||+..++++.+++.+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999764
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-33 Score=254.44 Aligned_cols=169 Identities=17% Similarity=0.144 Sum_probs=135.6
Q ss_pred cceEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
|++++++||++.| ++.. +|+++||++++|++++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 5533 7799999999999999999999999999999999998 99999 4666422
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....|. ++++.. ++ +.+++.+|..+.....+.........+.++++.+++. .+.++.+|||||+|||++||||+
T Consensus 74 ~~r~ig~-v~Q~~~-lf-p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 74 ADRDIAM-VFQNYA-LY-PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred HHCCEEE-EeCCcc-cc-CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 123454 566543 22 3478888887765444433222334567888888886 46778899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+..++++++.|.+
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-33 Score=251.96 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=134.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||+++||+|.|+.......+|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999632112237899999999999999999999999999999999998 99999 4665321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
+...|. ++++.... ...++.++..+.....+.+.......+.++++.+++. .+.++.+||+||+||+++|||
T Consensus 78 ~~~r~~Ig~-v~Q~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 78 TKARRQIGM-IFQHFNLL--SSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred HHHhcCEEE-EECCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 123454 56554322 2257778776655444443333344567888988886 467788999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++||+||||++||+.+++.++++|.+.
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l 186 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEI 186 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-33 Score=251.93 Aligned_cols=170 Identities=17% Similarity=0.186 Sum_probs=137.5
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
+|++|+++||++.|++.. +++++||++++|++++|+|||||||||||++|+|+++ |++|+ .+++...
T Consensus 3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 467899999999998643 6799999999999999999999999999999999998 99999 4666422
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....|. ++++.. ++ +++++.+|..+.....+.........+.++++.+++. .+.++..|||||+|||++||+|+
T Consensus 76 ~~r~ig~-vfQ~~~-lf-p~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 76 QQRDICM-VFQSYA-LF-PHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred HHCCEEE-EeCCcc-cC-CCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 123444 555543 22 3378888887765444443333345677888888886 46778899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+|||+++||+..++++++.|.+
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRE 181 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 22
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.2e-33 Score=236.05 Aligned_cols=169 Identities=17% Similarity=0.160 Sum_probs=128.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
|++++|+++.|++..+. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQP--ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCCee--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 47899999999642112 6799999999999999999999999999999999997 99999 4665321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
+...+. ++++..... .+++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 76 ~~~~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 76 PFLRRHIGM-VFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HHHHHhceE-EecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 112343 555543222 256667665543333332222234567788888875 355677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|++||+||||++||+..++.+.+++.+
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEE 183 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.6e-33 Score=251.85 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=138.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|++|+++||++.|++.. +|+++||++++|++++|+|||||||||||++|+|+++ |++|+ .+++...
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 56899999999998744 6799999999999999999999999999999999998 99999 5666432
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
....|. ++++.. ++ +++++.+|..+.....+.........+.++++.+++. .+.++..|||||+|||++||+|+.
T Consensus 75 ~r~ig~-v~Q~~~-lf-p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 75 KRDYGI-VFQSYA-LF-PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred HCCEEE-EeCCcc-cC-CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 123444 555533 23 2478888888765544443333345678889998886 467788999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|+++|+|||+++||+..++++++.|.+.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988653
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-33 Score=228.40 Aligned_cols=169 Identities=16% Similarity=0.153 Sum_probs=127.1
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-----cc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~-----G~-~~~~~~~- 147 (255)
++.++++||++.|++.+ +|++||++|++++++||+||||||||||||++..+.. ... |+ .++|+..
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCeecc
Confidence 46799999999999877 8899999999999999999999999999999999875 333 44 2333211
Q ss_pred ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHh------hcCCCCCCCCCCCcc
Q 025256 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LRNQGSVYAPSFDHG 212 (255)
Q Consensus 148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~------l~l~~~~~~~~lS~G 212 (255)
+...|. +++.....+ ++..+|..+..+..|+....-.+.+.+.|+. +.-..+...-.||||
T Consensus 78 ~~~~d~~~lRr~vGM-VFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGG 153 (253)
T COG1117 78 DPKVDVVELRRRVGM-VFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGG 153 (253)
T ss_pred CCCCCHHHHHHHhee-eccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChh
Confidence 234454 444443323 5677777777777776432222223333332 222345566689999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||++|||+|+.+|+||++||||++|||.+..++-+++.+.
T Consensus 154 QQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL 195 (253)
T COG1117 154 QQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195 (253)
T ss_pred HHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 25
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-33 Score=241.11 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=139.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC---CC-----
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ---VK----- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~---~~----- 147 (255)
+|++++++|.|+... +++||+++|+.||.++|.||||||||||||+|+|++. |+.|. .++++ ..
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 588999999999977 8899999999999999999999999999999999998 99999 46664 11
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CC-CCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~-~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
....|. ++++.- ++ .++++.+|+.+...... .+ .......+.++|+.+.+. .+.|+.+|||||+|||++|||
T Consensus 75 ~~R~VGf-vFQ~YA-LF-~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 75 RDRKVGF-VFQHYA-LF-PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred hhcceeE-EEechh-hc-ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 234565 555443 33 35899999988775543 23 333455677888888886 578999999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++|+|||||..||...++++...+.+.
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887654
No 26
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7e-33 Score=245.64 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=129.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~ 148 (255)
+++++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|++. |++|+ .+++... +
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 689999999998644 7799999999999999999999999999999999997 99999 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...|. ++++.... ..+++.++........+.........+.++++.+++.. +.++..||+||+||+++|++++.+
T Consensus 77 ~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 77 VAIGV-VPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred hcEEE-EeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 23444 55553322 23677776654333333322112234567788887763 667789999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++||+||||++||+..++.+++++.+
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 27
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-33 Score=251.57 Aligned_cols=169 Identities=15% Similarity=0.112 Sum_probs=133.8
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|++++++|+++.|++.. +++++||++++|++++|+|||||||||||++|+|+++ |++|+ .+++...
T Consensus 1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 45799999999998643 7799999999999999999999999999999999998 99999 4655321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
....+. ++++... + ..+++.++..+.....+.........+.++++.+++. .+.++..||+||+||+++|++|+.
T Consensus 74 ~~~i~~-v~Q~~~l-~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 74 ERGVGM-VFQSYAL-Y-PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred HCCEEE-EeCCccc-C-CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 122444 5655432 2 2367888776654433432222234567888888886 456778999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++||+||||++||+..++++.++|.+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988865
No 28
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-33 Score=225.94 Aligned_cols=173 Identities=13% Similarity=0.204 Sum_probs=149.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCC
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD 150 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~ 150 (255)
|+++.+++++..|++.. ..+++|+|++|.+||++.++|||||||||||++++|+.. |+.|+ .+++... -.+
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 56788999999999854 447799999999999999999999999999999999998 99999 3665432 235
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.|. ++++.-.++. +++.+|..+..+..|+......+...+.+..+++. .+.++-+|||||+||+.+||||+.+|+
T Consensus 76 rgv-VFQ~~~LlPW--l~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 76 RGV-VFQNEALLPW--LNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred cee-EeccCccchh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 676 6666654443 78999999999999998777777888899998886 467788999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhC
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~~~ 255 (255)
+|++|||+..||.-.++.+.+++-..|
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw 179 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLW 179 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998776
No 29
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.1e-33 Score=234.61 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=126.5
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------- 148 (255)
++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4688999999752100127799999999999999999999999999999999997 99999 46553211
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. +.++.... ..+++.++..+.....+.........+.++++.+++.. +..+..||+||+||+++|++
T Consensus 78 ~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (218)
T cd03255 78 AFRRRHIGF-VFQSFNLL--PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA 154 (218)
T ss_pred HHHhhcEEE-EeeccccC--CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence 12333 44443322 22566666655333233221112345677888888763 56677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|++||+||||++||+.+++.+.+++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (218)
T cd03255 155 LANDPKIILADEPTGNLDSETGKEVMELLRE 185 (218)
T ss_pred HccCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 30
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-33 Score=234.27 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=128.2
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------P 149 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------~ 149 (255)
|+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.... .
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 46899999998643 6799999999999999999999999999999999997 99999 45553211 1
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..+. +.++.... ..+++.++..+.....+.........+.++++.+++.. +.++..||+||+||+++|++++.+|
T Consensus 74 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 74 RIGI-VFQDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred cEEE-ecCCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2333 45544322 23566666655433334322222345678888888763 5677899999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|+||||++||+.+++.+.++|.+
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~ 176 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEK 176 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 31
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-33 Score=233.76 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=125.5
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 46889999997643 6799999999999999999999999999999999997 99999 4555321 112
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. ++++.... ..+++.++........+.........+.++++.+++.. +..+..||+||+||+++|++|+.+|+
T Consensus 74 i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 74 IGM-VFQDYALF--PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred EEE-EcCchhhc--cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 333 44443221 12566666554332222221122234567788887763 55667999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+||||++||+.+++.+.++|.+
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKE 175 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1e-32 Score=250.37 Aligned_cols=171 Identities=19% Similarity=0.210 Sum_probs=136.7
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
++++|+++|+++.|++.. +++++||++++|++++|+|||||||||||++|+|+++ |++|+ .+++...
T Consensus 11 ~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA 83 (375)
T ss_pred CCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 467899999999998644 6799999999999999999999999999999999998 99999 4666432
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....|. ++++.. ++ +++++.+|+.+.....+.+.......+.++++.+++. .+.++..|||||+|||++||+|+
T Consensus 84 ~~r~ig~-vfQ~~~-lf-p~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 84 ENRHVNT-VFQSYA-LF-PHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred HHCCEEE-EecCcc-cC-CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 123444 555543 22 2478888887755444433222234567788888886 46778899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++||+|||+++||+..++.+++.|.+.
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 190 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKAL 190 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988653
No 33
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-32 Score=234.15 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=129.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++||++.|++......+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999752111226799999999999999999999999999999999997 99999 46653211
Q ss_pred ------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhh
Q 025256 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a 220 (255)
...+. ++++... + ..+++.++..+.....+.........+.++++.+++.. +..+..||+||+||+++|
T Consensus 81 ~~~~~~~~i~~-v~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 81 KAELRNQKLGF-IYQFHHL-L-PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHHHHhccEEE-EecCccc-C-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 12343 5555432 2 22567776655332223222122345677888888763 456679999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 34
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.98 E-value=1.3e-32 Score=232.01 Aligned_cols=167 Identities=14% Similarity=0.158 Sum_probs=126.8
Q ss_pred eEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 77 ~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
|++++|+++.|+ +.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 478999999994 432 6799999999999999999999999999999999997 99999 45553211
Q ss_pred -----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhh
Q 025256 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~ 221 (255)
...+. +.++.... ..+++.++........+.........+.++++.+++.. +..+..||+||+||+++|+
T Consensus 74 ~~~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 74 LPLLRRRIGV-VFQDFRLL--PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR 150 (214)
T ss_pred HHHHHhheEE-EecChhhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 12333 45443321 12566666655433333222122345677888888753 4566799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|+++|+||||++||+.++..+.++|.+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 35
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.1e-32 Score=233.54 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=127.8
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCeeE
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVAT 153 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g~ 153 (255)
++++|+++.|++......+++++||+|++|++++|+||||||||||+++|+|++. |++|+ .+++... ....+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence 4688999999762111127799999999999999999999999999999999997 99999 4555321 223444
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++.... ..+++.++..+.....+.........+.++++.+++.. +..+..||+||+||+++|++++.+|+++|
T Consensus 78 -v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 78 -VFQQDALL--PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred -Eecccccc--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55443321 22566666654433333322222345677888888753 56677999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||||++||+.+++.+.++|.+
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLD 176 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 36
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=8.3e-34 Score=230.68 Aligned_cols=170 Identities=19% Similarity=0.234 Sum_probs=134.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.++.++|+.|+|+... ++++|||++++||+|||+|||||||||.+.++.|+.+ |++|+ .+++...
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 56899999999999865 7799999999999999999999999999999999998 99999 4665332
Q ss_pred -CCCeeE-EEecCCCCCcCccCCcccChHHHHHhcCCCC--CCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 148 -PPDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 -~~~~g~-~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
+...|. ++++..- ++ .++++.+|+....+...... ......+.++++.+.+. .+.+...||||+|+|+.+||
T Consensus 75 ~RArlGigYLpQE~S-IF-r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 75 KRARLGIGYLPQEAS-IF-RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred HHhhcCcccccccch-Hh-hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 122232 1333322 22 34788888777665544221 23334567888888886 56677799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+.+|++++|||||+|.||.+..++..++..
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999888765
No 37
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.7e-32 Score=230.72 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=127.8
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCCee
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDVA 152 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~~g 152 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....+
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 46889999997633 6799999999999999999999999999999999997 99999 4665432 12233
Q ss_pred EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~il 230 (255)
. +.++.... ..+++.++........+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+++
T Consensus 74 ~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 74 Y-LPEERGLY--PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred E-eccCCcCC--cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3 45544322 2256777665543333332222234567788888775 34567799999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHh
Q 025256 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 ilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||||++||+..++.+.+++.+
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRE 173 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 38
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.6e-32 Score=234.80 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=125.9
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------- 147 (255)
++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 46889999997643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~ 222 (255)
+...+. +.++... + ..+++.++..+..... +.........+.++++.+++.. +..+..||+||+||+++|++
T Consensus 74 ~~~~~i~~-v~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 74 RLRRRMGM-LFQSGAL-F-DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HHhcceEE-EccCccc-C-CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 112333 4544332 2 2356666665432211 1211112334567788888753 56677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 181 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRS 181 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 39
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.98 E-value=2.3e-32 Score=242.06 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=133.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~ 148 (255)
+++++|++|.|++.. +++++||++++|+++||+||||||||||+++|+|++. |++|+ .+++... .
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 489999999998644 7899999999999999999999999999999999998 99999 4665322 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...|. ++++.. ....+++.++..+....++.+.........++++.+++. .+.++..||+||+||+++|++++.+
T Consensus 75 ~~ig~-~~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 75 RNIGY-LPEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred hceEE-ecCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 22444 444433 222367777777655555543332344567888888886 3667789999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|+||||++||+.+++.+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~ 179 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNI 179 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998763
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.4e-32 Score=245.90 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=131.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||+++||++.|+.......+++++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 48899999999721111227799999999999999999999999999999999998 99999 4665321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
+...+. ++++... + ..+++.++..+.....+.........+.++++.+++. .+.++..||+||+||+++|++
T Consensus 78 ~~~~~~ig~-v~q~~~l-~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 78 RKARRQIGM-IFQHFNL-L-SSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred HHHhcCEEE-EeCCCcc-C-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 123444 5554432 2 2367777776654444433222234567788888876 356677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l 186 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDI 186 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998753
No 41
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.4e-32 Score=236.58 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=128.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCee
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA 152 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g 152 (255)
|++++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....+
T Consensus 1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 478999999997643 6799999999999999999999999999999999997 99999 4655322 12234
Q ss_pred EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEE
Q 025256 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~il 230 (255)
. +.++.... ..+++.++........+.........+.++++.+++.. +..+..||+||+||+++|++++.+|++|
T Consensus 74 ~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 74 V-VFQNEGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred E-EeCCCccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 55543322 22566666554332233322222345678888888763 5567799999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhh
Q 025256 231 IVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 231 ilDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||||++||+.+++.+.++|.+.
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKL 174 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 42
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.98 E-value=2.1e-32 Score=231.30 Aligned_cols=171 Identities=16% Similarity=0.144 Sum_probs=130.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~ 148 (255)
+++++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++... .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 47899999999864111126799999999999999999999999999999999997 99999 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...+. +.++... + ..+++.++........+.........+.++++.+++. .+..+..||+||+||+++|++++.+
T Consensus 78 ~~i~~-~~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (218)
T cd03266 78 RRLGF-VSDSTGL-Y-DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD 154 (218)
T ss_pred hhEEE-ecCCccc-C-cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence 12333 4544422 2 2356777665544333332222234567788888876 3567779999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++||+||||++||+..++.+.++|.+
T Consensus 155 p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 155 PPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 43
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.98 E-value=4.8e-32 Score=230.70 Aligned_cols=173 Identities=17% Similarity=0.085 Sum_probs=128.8
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
.++++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence 3579999999999752111126799999999999999999999999999999999997 99999 45553211
Q ss_pred -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhh
Q 025256 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED 219 (255)
Q Consensus 149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~ 219 (255)
...+. +.++... + ..+++.++..+.....+.........+.++++.+++.. +..+..||+||+||+++
T Consensus 81 ~~~~~~~~~i~~-~~q~~~l-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l 157 (228)
T PRK10584 81 ARAKLRAKHVGF-VFQSFML-I-PTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHHHHhheEEE-EEccccc-C-CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence 12333 4544322 2 22466666554322222222222345677888888753 55677999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus 158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191 (228)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
No 44
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.98 E-value=2.4e-32 Score=247.05 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=135.5
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC--cc-ccCCCCC------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--AS-SFDSQVK------ 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~--G~-~~~~~~~------ 147 (255)
.++++||+|.|++.. +|+++||++++|++++|+|||||||||||++|+|++. |++ |+ .+++...
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 478999999998643 7899999999999999999999999999999999998 999 99 4665322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
....|. ++++.. ++ ..+++.+|+.+.....+.+.......+.++++.+++. .+.++..||+||+|||++||||+.
T Consensus 78 ~r~ig~-vfQ~~~-l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 78 KRGLAL-LFQNYA-LF-PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred HCCEEE-EECCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 123454 555543 22 3478888887765544444333344577888888886 467788999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++||||||+++||+..++++++.|.+
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAA 182 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998875
No 45
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.98 E-value=2.6e-32 Score=231.11 Aligned_cols=168 Identities=18% Similarity=0.150 Sum_probs=127.3
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------CC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~~ 149 (255)
|+++||++.|++.. ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 l~~~~l~~~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKGT--KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ 75 (220)
T ss_pred CEEEeeEEEeCCCC--ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence 46889999997521 117799999999999999999999999999999999997 99999 4555322 11
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..+. +.++.... ...++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|
T Consensus 76 ~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 76 SLGY-CPQFDALF--DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred hEEE-ecCcCCcc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 2343 45443322 1256666665544333332222234566788888775 35667899999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++||+||||++||+..++.+.+++.+
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 46
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.98 E-value=3.8e-32 Score=230.24 Aligned_cols=171 Identities=16% Similarity=0.092 Sum_probs=126.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 37899999999742111226799999999999999999999999999999999997 99999 45553210
Q ss_pred -----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
...+. ++++.... ..+++.++..................+.++++.+++. .+..+..||+||+||+++|+
T Consensus 78 ~~~~~~~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 78 AKLRNKKLGF-IYQFHHLL--PDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HHHHHhcEEE-EecccccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 12333 55554322 1256666665432222221111233456788888775 35667799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|++||+||||++||+.+++.+.++|.+
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 186 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 47
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.98 E-value=2.9e-32 Score=229.65 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=125.9
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
++++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 46889999998743 6799999999999999999999999999999999997 99999 4555321 112
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. +.++... + ...++.++........+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 74 IAM-VFQNYAL-Y-PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred EEE-EecChhh-c-cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 333 4444332 2 2256666665433222322211223456778887775 456778999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+..++.+.++|.+
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKR 175 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 48
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=3.4e-32 Score=232.36 Aligned_cols=171 Identities=18% Similarity=0.182 Sum_probs=128.4
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
||+++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 47899999999763100126799999999999999999999999999999999998 99999 46653211
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. ++++... + ..+++.++..+.....+.........+.++++.+++.. +..+..||+||+||+++|++
T Consensus 78 ~~~~~~i~~-~~q~~~~-~-~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 78 RKARRRIGM-IFQHFNL-L-SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred HHHHhheEE-EccCccc-C-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 12333 4444332 2 22566666654433333221112345677888888763 56677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|+++|+||||++||+.+++.+.+++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRD 185 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 49
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.4e-32 Score=246.54 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=135.6
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
++++|+++|+++.|++.. +++++||++++|++++|+|||||||||||++|+|++. |++|+ .+++...
T Consensus 16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 356899999999998643 7799999999999999999999999999999999998 99999 4666432
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....|. ++++.. ++ +++++.+|..+.....+.........+.++++.+++. .+.++..||+||+|||++||+|+
T Consensus 89 ~~r~ig~-vfQ~~~-lf-p~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 89 YQRPINM-MFQSYA-LF-PHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred HHCCEEE-EeCCCc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 123454 565543 22 3478888887765444433222334567888888886 46778899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+|||+++||...++++++.+.+
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 194 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVD 194 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998876654
No 50
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.6e-32 Score=241.92 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=131.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCcc-ccCCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVKP---- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~~~~~~---- 148 (255)
|.+|+++||++.|+.......+|+||||+|++||++||+|+||||||||+++|+|++... +|++|+ .++|....
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 567999999999976322234789999999999999999999999999999999998511 237888 46653211
Q ss_pred --------CCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC-----CCCCCCCCCcccc
Q 025256 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG 214 (255)
Q Consensus 149 --------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~ 214 (255)
...+. ++++......+.+++.++........ +.........+.++++.+++. .+.++.+|||||+
T Consensus 81 ~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~ 159 (326)
T PRK11022 81 KERRNLVGAEVAM-IFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHHHhCCCEEE-EecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 12344 67765422222344433333222221 222222345567889998885 2567889999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|+||+.+|++||+||||++||+..+.++.++|.+.
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l 199 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 51
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=4.5e-32 Score=232.17 Aligned_cols=167 Identities=17% Similarity=0.118 Sum_probs=126.5
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+++++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 478999999997643 6799999999999999999999999999999999997 99999 45553211
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...+. ++++.... ..+++.++........+.........+.++++.+++. .+..+..||+||+||+++|++++.+
T Consensus 74 ~~i~~-~~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 74 ARLGV-VFQQPTLD--LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hhEEE-eCCCCCCc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 12233 44443221 2256666654433222222111233456778887775 3567789999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+.+++.+.++|.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 52
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.8e-32 Score=226.71 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=135.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
+++++++||+..|+..+ +|++|||++++||+++|+|+||+|||||||.|+|+.+ +.+|+ .++|....
T Consensus 1 ~~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 1 APMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPH 73 (237)
T ss_pred CCceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHH
Confidence 36899999999999876 8899999999999999999999999999999999997 88999 56764331
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCC--CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhc
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
...|..+.-.+..++. .+|+.||.........- .+..+.+.+.+++-+|....+.....|||||+|-+++||||+
T Consensus 74 ~r~r~Gi~~VPegR~iF~-~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 74 ERARLGIAYVPEGRRIFP-RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHHhCCeEeCcccccchh-hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 2234433344555443 48888887654322221 122224556666666777788889999999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++|+||||+.||-|...++|.+.|.+.
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l 182 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988753
No 53
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.1e-32 Score=232.23 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=126.2
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
+++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 589999999998643 6799999999999999999999999999999999997 99999 4555321 11
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCC----CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~----~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
..+. +.++.... ..+++.++..+.....+. ........+..+++.+++. .+..+..||+||+||+++|+++
T Consensus 75 ~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 75 NVGF-VFQHYALF--RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred ceEE-EecCCccc--CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 2333 55543321 225666665543222221 0111123456778888775 3556779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+..++.+.+++.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRR 181 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 54
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=6.7e-32 Score=232.86 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=127.8
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 35799999999998643 6799999999999999999999999999999999997 99999 4554321
Q ss_pred ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCcccc
Q 025256 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~ 214 (255)
+...+. +.++.... ...++.++..+.... .+.........+.++++.+++. .+..+..||+||+
T Consensus 74 ~~~~~~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 74 SQQKGLIRQLRQHVGF-VFQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ 150 (250)
T ss_pred cchhhHHHHhhhhEEE-EecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence 112333 55543222 124666666543221 1221111223456778888775 3566789999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 190 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 55
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.6e-32 Score=229.30 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=141.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCCe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV 151 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~~ 151 (255)
++++++|+|+|++.. |++|+||++++|++.|++|||||||||++|+|.|++. |++|+ .++|+.. ....
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999987 8899999999999999999999999999999999998 99999 4666432 2233
Q ss_pred eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
|+.-.-.|.| .++++.+.+.+.....|++.+.....+..+++++.+. ...++.+||.|++|++.+..+++++|++
T Consensus 75 GyLPEERGLy---~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 75 GYLPEERGLY---PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred ccChhhhccC---ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 4321222322 2478888889999999998887778889999999887 4567889999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHh
Q 025256 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||||||+||||.+.+.+.+.+.+
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~ 175 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFE 175 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHH
Confidence 999999999999999999888754
No 56
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=4.7e-32 Score=247.71 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=131.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|++|+++||++.|++.. +|+++||++++||+++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 46899999999998744 7799999999999999999999999999999999998 99999 4555321
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHHhc--CCC--CCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAP--WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~--g~~--~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
....|. +.++....+ .+++.++....+..+ .+. ...+...+.++++.+++. .+..+.+||+||+||+++
T Consensus 74 ~~~~~ig~-v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 74 AASRRVAS-VPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL 150 (402)
T ss_pred HHhcceEE-EccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 123454 454433222 256666554422111 111 122344567888888886 356778999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|+.+|++|||||||++||+..+.+++++|.+.
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 57
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=4.6e-32 Score=230.02 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=126.0
Q ss_pred eEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
|++++|+++.| ++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 47899999999 4432 6799999999999999999999999999999999997 99999 4555321
Q ss_pred ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhh
Q 025256 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~ 221 (255)
+...+. ++++....+ ..++.++........+.........+.++++.+++.. +..+..||+||+||+++|+
T Consensus 74 ~~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 74 VPFLRRQIGM-IFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred HHHHHhheEE-EecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 112333 555443212 2466666554332223222112234567788877753 5667799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875
No 58
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.3e-32 Score=237.40 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=131.7
Q ss_pred eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
.|+++||++.|+.... ...+|+++||+|++|+++||+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999975211 1127799999999999999999999999999999999998 99999 4665322
Q ss_pred ---CCCeeEEEecCC-CCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC----CCCCCCCCCccccchhhh
Q 025256 148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 ---~~~~g~~i~~d~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~~ 219 (255)
....|. ++++. ..++ ..++.+++.+.....++........+.++++.+++. .+.++..||+||+||+++
T Consensus 79 ~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 79 SDIRKKVGL-VFQYPEYQLF--EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred HHHhhceEE-EecCchhccc--cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence 122344 56653 2222 146777766544444443222234567888888885 456778999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|++|+.+|++||+||||++||+..+.++.++|.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753
No 59
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=3.2e-32 Score=229.49 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=124.0
Q ss_pred EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCeeEE
Q 025256 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATV 154 (255)
Q Consensus 79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g~~ 154 (255)
+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....+.
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~- 72 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGY- 72 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEE-
Confidence 3679999997643 6799999999999999999999999999999999997 99999 4665321 223443
Q ss_pred EecCCCCCcCccCCcccChHHHHHhc-CC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
+.++.........++.++........ .. ..........++++.+++. .+.++..||+||+||+++|++++.+|+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 55543221111145655554321111 10 1111234566788887775 356678999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+||||++||+..++.+.++|.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 60
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=7e-32 Score=226.24 Aligned_cols=162 Identities=17% Similarity=0.108 Sum_probs=124.9
Q ss_pred EEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCCe
Q 025256 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDV 151 (255)
Q Consensus 79 ~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~~ 151 (255)
+++|+++.|++ .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36799999976 33 7799999999999999999999999999999999997 99999 4555322 1234
Q ss_pred eEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 152 ATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 152 g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
+. +.++.. .++ ..++.++..+.....+ .....+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 ~~-~~q~~~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 74 GY-VMQDVDYQLF--TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EE-EecChhhhhh--hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC
Confidence 44 555532 122 2466665544322211 1234567888888876 356677999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+||||++||+..++.+.+++.+.
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~ 172 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIREL 172 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998753
No 61
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=4.7e-32 Score=228.07 Aligned_cols=165 Identities=14% Similarity=0.140 Sum_probs=124.1
Q ss_pred EEccceeeccc--cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 79 ~i~~lsk~y~~--~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+++|+++.|++ .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence 36799999976 33 6799999999999999999999999999999999997 99999 45553211
Q ss_pred -CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 149 -PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 149 -~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
...+. +.++.. .++ .+++.++........+.........+.++++.+++. .+..+..||+||+||+++|++++
T Consensus 74 ~~~i~~-~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 150 (211)
T cd03225 74 RRKVGL-VFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred HhhceE-EecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 12333 555432 122 246666654432222221111223456788888775 35677899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+++|+||||++||+..++.+.++|.+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 62
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=8.4e-32 Score=234.93 Aligned_cols=169 Identities=15% Similarity=0.216 Sum_probs=128.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
+++|+++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 45799999999997643 6799999999999999999999999999999999997 99999 46553211
Q ss_pred ------CCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
...+. +.++.... ..+++.++........ +.........+.++++.+++. .+..+..||+||+||+++
T Consensus 78 ~~~~~~~~i~~-v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 78 RLYTVRKRMSM-LFQSGALF--TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred hHHHHhhcEEE-EecccccC--CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 12333 55543322 2256666665432221 111111123456678888876 356678999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 63
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.97 E-value=7.1e-32 Score=230.14 Aligned_cols=167 Identities=21% Similarity=0.238 Sum_probs=126.4
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------- 147 (255)
++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 46889999998643 7799999999999999999999999999999999997 99999 4555321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
....+. +.++... + ..+++.++........+.........+..+++.+++. .+..+..||+||+||+++|++++.
T Consensus 74 ~~~i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 74 RLGIGY-LPQEASI-F-RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred hccEEE-ecCCccc-c-ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 012333 4444322 1 2256666665433222322112223456778887775 356677999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++||+||||++||+.+++.+.+++.+.
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 64
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=8.5e-32 Score=226.14 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=126.4
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------CC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------PD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------~~ 150 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.... ..
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 46889999997643 7799999999999999999999999999999999997 99999 46554321 12
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. ++++... + ..+++.++........+ .......++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~-~-~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 74 IGA-LIEAPGF-Y-PNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EEE-ecCCCcc-C-ccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 333 4544332 1 22566666655433222 1345567788888775 356677999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+..++.+.+++.+
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~ 171 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILS 171 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 65
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=8.5e-32 Score=242.93 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=132.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
+|+++|+++.|++.. +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++... ..
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 488999999998744 7799999999999999999999999999999999998 99999 4666422 12
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhc----CCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~----g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
..+. ++++... + +.+++.+|..+..... +.........+.++++.+++. .+.++..||+||+||+++||||
T Consensus 75 ~i~~-v~Q~~~l-~-p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 75 KVGF-VFQHYAL-F-RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred CEEE-EecCccc-C-CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 3444 5655432 2 2367777776644321 111112234567888888886 4677889999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||++||+..+++++++|.+.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 182 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQL 182 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998753
No 66
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-31 Score=239.49 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=132.7
Q ss_pred cceEEEccceeeccccc------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC
Q 025256 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~ 147 (255)
+++|+++||++.|+... ..+.++++|||+|++|+++||+|+||||||||+++|+|++. |++|+ .+++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 46899999999996321 12347899999999999999999999999999999999997 89999 4665321
Q ss_pred -----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCcc
Q 025256 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (255)
Q Consensus 148 -----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G 212 (255)
+...+. ++++.+....+.+++.++........ +.........+.++++.+++. .+.++.+||||
T Consensus 80 ~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 80 LKADPEAQKLLRQKIQI-VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred CcCCHHHHHHHhCCEEE-EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 123444 67765322223345544443322221 222222334568889988885 36788899999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|+||+.+|++||+||||++||...+.++.++|.+.
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l 200 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 67
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.7e-32 Score=226.88 Aligned_cols=166 Identities=17% Similarity=0.132 Sum_probs=126.7
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------P 149 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------~ 149 (255)
++++|+++.|++.. +++++||++++| +++|+||||||||||+++|+|+++ |++|+ .+++.... .
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 46889999997643 679999999999 999999999999999999999997 99999 45553221 1
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..+. +.++.... ..+++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|
T Consensus 73 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 73 RIGY-LPQEFGVY--PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred heEE-ecCCCccc--ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2333 45544322 2256666665443333332222234566778888775 35677899999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|+||||++||+.+++.+.+++.+.
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSEL 176 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999763
No 68
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.2e-31 Score=224.71 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=127.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~ 148 (255)
+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 478999999998643 6799999999999999999999999999999999997 99999 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...+. +..+... ...+++.++........+. .....+.++++.+++. .+.++..||+||+||+++|++++.+
T Consensus 74 ~~~~~-~~~~~~~--~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 74 QDLLY-LGHQPGI--KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred hheEE-eCCcccc--CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 12333 3333221 2225666666554322221 2335567788888875 4567779999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+..++.+.++|.+
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 69
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=8.3e-32 Score=226.95 Aligned_cols=167 Identities=17% Similarity=0.134 Sum_probs=125.9
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------- 148 (255)
++++|+++.|++. .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 l~~~~l~~~~~~~-~~--~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTKTYPNG-TA--ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEEEeCCC-ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence 4688999999642 12 6799999999999999999999999999999999997 99999 45553211
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
...+. +.++.... ..+++.++........+.........+.++++.+++. .+..+..||+||+||+++|+++
T Consensus 75 ~~~~~i~~-v~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 75 YLRRKIGV-VFQDFRLL--PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHheEE-EecCchhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 12333 55543222 2256667665543333322211223456778887775 3556779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|+++|+||||++||+.+++.+.+++.+
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 181 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK 181 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 70
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=7.7e-32 Score=225.89 Aligned_cols=164 Identities=12% Similarity=0.021 Sum_probs=125.2
Q ss_pred EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----------
Q 025256 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----------- 147 (255)
Q Consensus 80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----------- 147 (255)
++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 468999998643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....+. +.++.. ++ ...++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++|+
T Consensus 74 ~~~~i~~-~~q~~~-~~-~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 74 RREKLGY-LFQNFA-LI-ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HHhCeeE-Eecchh-hc-cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 012333 444432 22 1256666665543322322222334567788888875 35667899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+++|+||||++||+.+++.+.++|.+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLE 179 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 71
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=7.9e-32 Score=226.95 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=125.7
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------- 148 (255)
++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 46889999998643 6799999999999999999999999999999999997 99999 45553221
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhh
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l 223 (255)
...+. +.++.... ..+++.++...... ..+.........+.++++.+++.. +..+..||+||+||+++|+++
T Consensus 74 ~~~~i~~-~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 74 LRQKVGM-VFQQFNLF--PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHhcceE-EecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 12333 44443322 22466666554321 122211112234567788877753 567789999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|+++|+||||++||+.+++.+.+++.+.
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 181 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998753
No 72
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=1.5e-31 Score=227.35 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=125.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999753101126799999999999999999999999999999999997 99999 45553211
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHH-HHHHHHhhcCC---CCCCCCCCCccccchhhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~-~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~ 219 (255)
...+. +.++........+++.++..+.....+.... ..... ..++++.+++. .+..+..||+||+||+++
T Consensus 78 ~~~~~~i~~-~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 78 KIRRKEIQM-VFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI 156 (228)
T ss_pred HHhhccEEE-EecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence 12333 5555421112235666665543322221111 11111 23677777774 356778999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
No 73
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=1.4e-31 Score=239.63 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=133.6
Q ss_pred cceEEEccceeeccccc---------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC
Q 025256 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~---------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~ 144 (255)
.++|+++||++.|+... ....+++++||+|++||+++|+|+||||||||+++|+|++. |++|+ .++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 46899999999996311 12347899999999999999999999999999999999997 99999 4666
Q ss_pred CCC-----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhc--CCCCCCcHHHHHHHHHhhcCC---CCCCCCC
Q 025256 145 QVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPS 208 (255)
Q Consensus 145 ~~~-----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~--g~~~~~~~~~~~~~l~~l~l~---~~~~~~~ 208 (255)
... +...+ ++.++......+.+++.+++.+..... ++........+.++++.+++. .+.++.+
T Consensus 83 ~~i~~~~~~~~~~~r~~i~-~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQ-MIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred EECCcCCHHHHHHHhCceE-EEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 321 12334 367765311222356666665543322 122222234556788888884 4678889
Q ss_pred CCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 209 lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||||+||+++|+||+.+|++||+||||++||...+.++.++|.+.
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 74
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-31 Score=244.06 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=120.0
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------------CCeeEEEecCCCCC
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------------PDVATVLPMDGFHL 162 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------------~~~g~~i~~d~~~~ 162 (255)
+++++||+|++|++++|+||||||||||+|+|+|++. |++|+ .+++.... ...+. +.++....
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igy-v~Q~~~l~ 118 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAM-VFQSFALM 118 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEE-EECCCcCC
Confidence 6899999999999999999999999999999999998 99999 46653211 13454 55543322
Q ss_pred cCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD 240 (255)
..+++.++..+.....+.........+.++++.+++. .+.++..||+||+||+++|++|+.+|++||+||||++||
T Consensus 119 --~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 119 --PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred --CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 2367777776654444433222234567888888886 456778999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 025256 241 GGVWKDVSSMFDE 253 (255)
Q Consensus 241 ~~~~~~l~~ll~~ 253 (255)
+..++++.++|.+
T Consensus 197 ~~~r~~l~~~L~~ 209 (400)
T PRK10070 197 PLIRTEMQDELVK 209 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999865
No 75
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3e-32 Score=228.16 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=135.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---C---
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---P--- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~--- 148 (255)
+++++++|+|+||+.. |++||||++++||+++||||||||||||+++|+|.++ |++|+ .+++... +
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 5789999999999987 9999999999999999999999999999999999998 99999 5777532 1
Q ss_pred -CCeeEEEecCCCCCcCccCCcccChHHHHHhc-------CCC-----CCCcHHHHHHHHHhhcCCC--CCCCCCCCccc
Q 025256 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV 213 (255)
Q Consensus 149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-------g~~-----~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~ 213 (255)
...|..=.++.-.+ .+++++.||........ +.+ +....+...++++.+++.. +.....||+|+
T Consensus 76 iar~Gi~RTFQ~~rl-F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 76 IARLGIARTFQITRL-FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHhccceeecccccc-cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 12333222222222 24589988886653311 111 1223455688999999874 55667999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.+|+||+.+|++|+||||.+|+.+....++.++|.+.
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i 195 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998763
No 76
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-31 Score=235.32 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=129.7
Q ss_pred eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
+++++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 6899999999974210 1126799999999999999999999999999999999998 99999 46664221
Q ss_pred ------CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256 149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 149 ------~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (255)
...+. +.++.. .++ .+++.++..+.....+.........+.++++.+++. .+..+..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 79 NLKKLRKKVSL-VFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred hHHHHHhceEE-EEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence 12344 555531 222 146667665433333322222234567888888885 36778899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 190 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKD 190 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 77
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=230.13 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=126.5
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999999998643 7799999999999999999999999999999999997 99999 4555321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhh
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~ 221 (255)
+...+. ++++.... ..+++.++........+ ...........++++.+++.. +..+..||+||+||+++|+
T Consensus 74 ~~~~~~i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 74 ARARRGIGY-LPQEASIF--RRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIAR 150 (241)
T ss_pred HHHHhCeEE-eccCCccc--ccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHH
Confidence 112333 44443221 12466665543321111 111112234567788777753 5667799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|++||+||||++||+..++.+.+++.+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988865
No 78
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-31 Score=235.53 Aligned_cols=171 Identities=14% Similarity=0.080 Sum_probs=131.6
Q ss_pred eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
.++++||++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|++. |++|+ .+++....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974211 1227799999999999999999999999999999999998 99999 46664221
Q ss_pred ------CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256 149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 149 ------~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (255)
...|. ++++.. .++. .++.++..+.....+.........+.++++.+++. .+.++..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 79 KLKPLRKKVGI-VFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred hHHHHHhhEEE-EeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence 12444 555532 2222 46777766544444443222234567888888885 35678899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|+.+|++||+||||++||+..+.++.+++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~ 190 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK 190 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865
No 79
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.5e-31 Score=229.70 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=126.8
Q ss_pred EEEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 78 l~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
++++||++.|++ .. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 467899999986 33 6799999999999999999999999999999999997 99999 46653211
Q ss_pred -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC----CCCCCCCCccccchhhhhhhh
Q 025256 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv~~a~~l 223 (255)
...+. +.++.... ..+++.++..+.....+.........+.++++.+++.. +..+..||+||+||+++|+++
T Consensus 74 ~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 74 RRKIGY-VIQQIGLF--PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred hcceEE-EccCcccc--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH
Confidence 12233 44443222 22566676655433223221122345678888888763 566779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 180 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKR 180 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998875
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-31 Score=233.70 Aligned_cols=170 Identities=17% Similarity=0.160 Sum_probs=129.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++||++.|+.. .. +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 3 ~~l~~~~l~~~~~~~-~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred ceEEEEEEEEEeCCC-Ce--eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 379999999999631 12 6799999999999999999999999999999999998 99999 46653221
Q ss_pred --CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 --~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
...|. ++++.. .+. ..++.++..+.....+.........+..+++.+++. .+..+..||+||+||+++|+||
T Consensus 77 ~~~~i~~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 77 VRSKVGL-VFQDPDDQVF--SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HHhhEEE-EecChhhhhc--cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 22344 555532 122 146666665433332332212234456778888875 4567789999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+|++||+||||++||+..+.++.+++.+.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 184 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998753
No 81
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=229.12 Aligned_cols=167 Identities=17% Similarity=0.149 Sum_probs=126.4
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 589999999998643 6799999999999999999999999999999999997 99999 4655321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHH-HHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhh
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~-~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ 218 (255)
+...+. ++++... + ..+++.++.... ....+.........+.++++.+++.. +..+..||+||+||++
T Consensus 75 ~~~~~~~~~i~~-~~q~~~~-~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 75 KAIRELRRNVGM-VFQQYNL-W-PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred hhHHHHHhheEE-EecCccc-c-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 012333 4444322 1 224666655432 11223222112334567788887753 5667799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++++.+|+++|+||||++||+.+++.+.+++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 82
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=1e-31 Score=230.66 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=124.4
Q ss_pred eEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
+++++||++.|+ +.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 478999999997 433 6799999999999999999999999999999999997 99999 4655321
Q ss_pred ----CCCeeEEEecCCCCCcCccCCcccChHHHHHh--------cCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccc
Q 025256 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV 213 (255)
Q Consensus 148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~ 213 (255)
....+. +.++..... .+++.++....... .+.........+.++++.+++.. +..+..||+||
T Consensus 74 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 74 LRKLRRRIGM-IFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150 (243)
T ss_pred HHHHHhheEE-EcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 112333 454433221 24555554321110 01111122334567788887753 56677999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 190 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 83
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=1.5e-31 Score=228.65 Aligned_cols=166 Identities=19% Similarity=0.185 Sum_probs=125.4
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------- 148 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 46789999997643 6799999999999999999999999999999999997 99999 45553211
Q ss_pred -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC----------CCCcHHHHHHHHHhhcCCC--CCCCCCCCccccc
Q 025256 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (255)
Q Consensus 149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~----------~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~q 215 (255)
...+. +.++... + ..+++.++..+.....+.. .......+.++++.+++.. +..+..||+||+|
T Consensus 74 ~~~i~~-v~q~~~l-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 74 RLGIGR-TFQIPRL-F-PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred hcCEEE-Eeccccc-c-cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 11333 4544332 2 2256766665543222111 1112234567788887753 5667799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++++.+|+++|+||||++||+.+++.+.+++.+
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 188 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 84
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.7e-31 Score=223.18 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=125.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----CC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PD 150 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----~~ 150 (255)
+++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|++. |++|+ .+++.... ..
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 689999999998643 6799999999999999999999999999999999997 99999 45553211 12
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. +..+... ....++.++........+ .......++++.+++.. +..+..||+||+||+++|++++.+|+
T Consensus 75 ~~~-~~~~~~~--~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 75 CHY-LGHRNAM--KPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cEE-ecCCCcC--CCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 233 3322221 122455565544322211 12344677888888753 56677999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+..++++.++|.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 85
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=2e-31 Score=226.71 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=126.5
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh-----cccCCCCcc-ccCCCCC----
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll-----~~~~p~~G~-~~~~~~~---- 147 (255)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++ . |++|+ .+++...
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 46889999998643 779999999999999999999999999999999999 7 99999 4655321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcCCC--CCC--CCCCCccccch
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDP 216 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~~--~~~--~~~lS~G~~qr 216 (255)
....+. ++++... + .+++.++..+.....+.... .....+.++++.+++.. +.. +..||+||+||
T Consensus 74 ~~~~~~~~~i~~-~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 74 VDVLELRRRVGM-VFQKPNP-F--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred hHHHHHHhhEEE-EecCchh-c--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence 112343 5555432 2 25777766543333332111 12345567888888763 233 47999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 187 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL 187 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763
No 86
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-31 Score=233.52 Aligned_cols=168 Identities=19% Similarity=0.170 Sum_probs=124.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
|++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 488999999998643 6799999999999999999999999999999999998 99999 46553221
Q ss_pred ---CCeeEEEecCCCC-CcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ---PDVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~d~~~-~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. +.++... ... .++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 74 ~~~~~i~~-v~q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 74 ALRQQVAT-VFQDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred HHHhheEE-EeeChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence 12333 4554321 111 23444444332223322111223455677777765 356678999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus 151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 182 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998763
No 87
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-31 Score=233.94 Aligned_cols=173 Identities=13% Similarity=0.133 Sum_probs=131.6
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++||++.|++.. ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 3799999999997421 1126799999999999999999999999999999999998 99999 46653221
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
...+. ++++...... ..++.+++.+.....++..........++++.+++. .+..+..||+||+||+++|++++
T Consensus 79 ~~~~i~~-v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 79 IRHKIGM-VFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred HHhhceE-EEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 12344 5555321111 246667665544333432222234567888888886 35677899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++||+||||++||+..++.+.++|.+.
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 186 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGI 186 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988653
No 88
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=235.18 Aligned_cols=172 Identities=15% Similarity=0.119 Sum_probs=131.7
Q ss_pred eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
||+++||++.|+.... ...+|+++||+|++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4889999999974211 1126799999999999999999999999999999999998 99999 4665321
Q ss_pred -----CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256 148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (255)
+...|. +.++.. .++. .++.++..+.....+.+.......+.++++.+++. .+..+..||+||+||++
T Consensus 78 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 78 EIKPVRKKVGV-VFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred cHHHHHhhEEE-EecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence 112344 555531 2222 46677766554444443322334567888888874 35677899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l 190 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998753
No 89
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.97 E-value=1.2e-31 Score=237.65 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=123.4
Q ss_pred eeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------CCCeeEEEe
Q 025256 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLP 156 (255)
Q Consensus 85 k~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~ 156 (255)
|.|++.. +|+++||+|++|+++||+||||||||||+|+|+|+++ |++|+ .+++... ....|. +.
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~ 72 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGI-VP 72 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEE-ec
Confidence 4576533 7799999999999999999999999999999999998 99999 4555322 123454 45
Q ss_pred cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE 234 (255)
++... ...+++.++..+.....+...........++++.+++. .+.++..||+||+||+++|+|++.+|++||+||
T Consensus 73 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 73 QYASV--DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred CCCCC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44332 22367777776654444433222234567888888886 466778999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHh
Q 025256 235 NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~ 253 (255)
||++||+..++.+++++.+
T Consensus 151 Pt~gLD~~~~~~l~~~l~~ 169 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRA 169 (302)
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999875
No 90
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.5e-31 Score=227.93 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=124.2
Q ss_pred EEEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 78 l~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
++++||++.|++ .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468899999975 33 7799999999999999999999999999999999997 99999 46653211
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHh--------cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCcccc
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG 214 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~ 214 (255)
...+. ++++.... ..+++.++....... .+.........+.++++.+++. .+..+..||+||+
T Consensus 74 ~~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 74 RQLRRQIGM-IFQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred HHHHhccEE-EcccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence 12333 44443221 124665555432110 1111112234456778888775 3567789999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 91
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3e-31 Score=232.34 Aligned_cols=170 Identities=15% Similarity=0.141 Sum_probs=129.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
|.+++++||++.|++. .. +++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++....
T Consensus 1 ~~~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 1 MHLIETRDLCYSYSGS-KE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR 74 (277)
T ss_pred CceEEEEEEEEEeCCC-Cc--eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 4679999999999642 11 6799999999999999999999999999999999997 99999 46653221
Q ss_pred ---CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. ++++.. .+. ..++.++..+.....+...........++++.+++. .+..+..||+||+||+++|++
T Consensus 75 ~~~~~i~~-v~q~~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 75 EVRKFVGL-VFQNPDDQIF--SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred HHHhheEE-EecCcccccc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 12343 555432 122 246666665433322322211223456788887776 356678999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++||+||||++||+.+++.+.+++.+
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 92
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=2.2e-31 Score=225.60 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=122.5
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------- 147 (255)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 46889999998643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhh-cCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....+. ++++... + ..+++.++..+.....+ ..........+++.+ .+. .+..+..||+||+||+++|++++
T Consensus 74 ~~~i~~-~~q~~~~-~-~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 74 RAGIGY-VPEGRRI-F-PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred hcCeEE-ecccccc-C-CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 112333 4444322 1 22566666554332221 111223344556655 233 45677799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++||+||||++||+..++.+.++|.+.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 93
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.97 E-value=4.7e-31 Score=236.30 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=131.1
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Ccc-ccCCCCC--
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~~~~~-- 147 (255)
.+++++++||++.|+.......+++++||+|++||+++|+|+||||||||+++|+|++. |+ +|+ .++|...
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 45789999999999642222347899999999999999999999999999999999997 64 898 4666322
Q ss_pred ---------C-CCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCCC-----CCCCCCCCc
Q 025256 148 ---------P-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH 211 (255)
Q Consensus 148 ---------~-~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~ 211 (255)
+ ...+. ++++......+.+++.++..+..... +.........+.++++.+++.. +.++.+|||
T Consensus 86 ~~~~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg 164 (330)
T PRK09473 86 LPEKELNKLRAEQISM-IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG 164 (330)
T ss_pred CCHHHHHHHhcCCEEE-EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH
Confidence 1 13343 67765422233345544443322222 2211122345677888888752 357789999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+++|++|+.+|++||+||||++||...+.++.++|.+.
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 94
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=236.94 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=130.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCcc-ccCCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVKP---- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~~~~~~---- 148 (255)
|++|+++||++.|+.......+++++||+|++||+++|+|+||||||||+++|+|++... .|++|+ .+++....
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 468999999999953211233789999999999999999999999999999999998411 257898 46653210
Q ss_pred --------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-----C-CCcHHHHHHHHHhhcCCC-----CCCCCCC
Q 025256 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-----W-TFNPLLLLNCLKNLRNQG-----SVYAPSF 209 (255)
Q Consensus 149 --------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-----~-~~~~~~~~~~l~~l~l~~-----~~~~~~l 209 (255)
...+. ++++........+++.++........... . ......+.++++.+++.. +.++.+|
T Consensus 81 ~~~~~~~~~~i~~-v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L 159 (330)
T PRK15093 81 RERRKLVGHNVSM-IFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL 159 (330)
T ss_pred HHHHHHhCCCEEE-EecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 12343 66665422222244444443221111110 0 112345678899998863 5677899
Q ss_pred CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||||+||+++|+||+.+|++||+||||++||+..+.++.++|.+.
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 204 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL 204 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999763
No 95
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-31 Score=235.59 Aligned_cols=172 Identities=12% Similarity=0.131 Sum_probs=132.0
Q ss_pred eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
+|+++||++.|++... ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 5899999999975311 1126799999999999999999999999999999999998 99999 4543210
Q ss_pred -------------------------CCCeeEEEecCC-CCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC
Q 025256 148 -------------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 201 (255)
Q Consensus 148 -------------------------~~~~g~~i~~d~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~ 201 (255)
....|. ++++. ..+.. .++.+++.+.....+.........+.++++.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV-VFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEE-EeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 112344 55553 22221 46677766554444543333345568888988885
Q ss_pred ---CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 202 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 202 ---~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.++..||+||+||+++|++|+.+|++||+||||++||+..++.+.++|.+.
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l 211 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL 211 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 36677899999999999999999999999999999999999999999998753
No 96
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.8e-31 Score=227.73 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=126.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 478999999998643 6799999999999999999999999999999999997 99999 46653211
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. +.++.... ..+++.++..+... ..+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 74 ~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 74 LIRQEAGM-VFQQFYLF--PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred HHhhceEE-EecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 12333 45443222 12466665544221 11221112233456788888775 356677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|+++|+||||++||+.+++.+.++|.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 97
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-31 Score=227.88 Aligned_cols=173 Identities=17% Similarity=0.086 Sum_probs=128.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~---- 147 (255)
|++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++. ..|++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 56799999999998643 67999999999999999999999999999999999851 0136898 4555321
Q ss_pred ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC--CCCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (255)
....+. ++++.... ..+++.++..+.....+.. .......+.++++.+++. .+..+..||+||+|
T Consensus 77 ~~~~~~~i~~-v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 77 VIELRRRVQM-VFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred HHHHhccEEE-EeccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence 122343 55553322 2256777665433222211 111123456778887763 35667799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998763
No 98
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-31 Score=229.82 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=126.1
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC---CCCe
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPDV 151 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~---~~~~ 151 (255)
++|+++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|++ +++... ....
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence 5799999999998643 6799999999999999999999999999999999997 999994 554321 2234
Q ss_pred eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcE
Q 025256 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
+. +.++.... ..+++.++..+. ... .......++++.+++.. +..+..||+||+||+++|++++.+|++
T Consensus 84 ~~-v~q~~~l~--~~~tv~enl~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 84 RL-MFQDARLL--PWKKVIDNVGLG-----LKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EE-EecCccCC--CCCcHHHHHHhc-----ccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 44 55544322 124555554331 111 12345677888888763 566789999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHh
Q 025256 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+||||++||+..++.+.++|.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIES 178 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998865
No 99
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=4.1e-31 Score=227.70 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=126.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccc-ccCCCCCC--
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVKP-- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~~~~~~-- 148 (255)
+++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |+ +|+ .+++....
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 478999999998643 6799999999999999999999999999999999997 88 998 46553221
Q ss_pred --------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCCccc
Q 025256 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (255)
Q Consensus 149 --------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (255)
...+. ++++.. ++. .++.++..+.....+. ...........+++.+++. .+..+..||+||
T Consensus 74 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 74 KIDVVELRRRVGM-VFQKPN-PFP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred ccchHHHHhheEE-EecCcc-cCC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 12333 454432 221 4666665543322231 1112234567788888875 245677999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++++.+|+++|+||||++||+..+..+.++|.+.
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 100
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.97 E-value=6.1e-31 Score=228.06 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=125.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC-----CC-
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----KP- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~-----~~- 148 (255)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.. ..
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 4799999999998643 6799999999999999999999999999999999997 99999 455542 11
Q ss_pred -----------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCCC---CCCCCCCCccc
Q 025256 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQG---SVYAPSFDHGV 213 (255)
Q Consensus 149 -----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~ 213 (255)
...+. ++++........++..++..+.....+... ........++++.+++.. +..+..||+||
T Consensus 78 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 78 LSEAERRRLLRTEWGF-VHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM 156 (258)
T ss_pred CCHHHHHHHhhcceEE-EeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence 12333 555532111112344444432211122110 111234567788888752 46778999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+.+++++.+++.+
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 196 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 101
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=4.5e-31 Score=228.98 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=125.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 589999999998643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc-
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG- 224 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~- 224 (255)
....+. +.++....+ .+++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++++
T Consensus 75 ~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 75 ARRRAV-LPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred hhheEE-EccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 112333 455433212 246655554322111111111223456778888775 36678899999999999999999
Q ss_pred -----cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 -----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 -----~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+..++.+.++|.+
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 59999999999999999999999998875
No 102
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=5.2e-31 Score=229.41 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=128.4
Q ss_pred eEEEccceeeccccc-----cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---
Q 025256 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~-----~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--- 147 (255)
+++++||++.|++.. ....+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 589999999996310 01227799999999999999999999999999999999997 99999 4665321
Q ss_pred --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccc
Q 025256 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q 215 (255)
....+. +.++........+++.++........ ++........+.++++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q 157 (265)
T TIGR02769 79 DRKQRRAFRRDVQL-VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQ 157 (265)
T ss_pred CHHHHHHHhhceEE-EecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 112343 55553211222356666554332222 222222334567888888874 35677899999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 195 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 103
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=9.1e-31 Score=222.67 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=127.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 4799999999998643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhh
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l 223 (255)
....+. +.++.. ++. .++.++..+.....+. ........++++.+++. .+.++..||+||+||+++|+++
T Consensus 79 ~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 79 YRQQVSY-CAQTPT-LFG--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred HHhccEE-Eecccc-ccc--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 112333 455433 222 3565655442211111 11234556888888884 3567889999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|+++|+||||++||+..++.+.++|.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998875
No 104
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=5.9e-31 Score=225.94 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=126.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 1 PILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred CeEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence 3689999999997643 7799999999999999999999999999999999997 99999 45553211
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhc-C-------CCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccc
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g-------~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~q 215 (255)
...+. +.++.... ..+++.++........ . .........+.++++.+++.. +..+..||+||+|
T Consensus 74 ~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q 150 (242)
T TIGR03411 74 IARAGIGR-KFQKPTVF--ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ 150 (242)
T ss_pred HHhcCeeE-eccccccC--CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 11333 44443221 2256666655432110 0 001112334677888887763 5667799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 151 WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 105
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-31 Score=227.39 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=126.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCCC
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVKP 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~~ 148 (255)
+.+++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ | ++|+ .+++....
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 56899999999998643 6799999999999999999999999999999999986 5 4898 45553211
Q ss_pred ----------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC--CCCcHHHHHHHHHhhcCC------CCCCCCCCC
Q 025256 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFD 210 (255)
Q Consensus 149 ----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS 210 (255)
...+. +.++.... ..+++.++..+.....+.. .......+.++++.+++. .+..+..||
T Consensus 75 ~~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 151 (253)
T PRK14267 75 SPDVDPIEVRREVGM-VFQYPNPF--PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLS 151 (253)
T ss_pred ccccChHHHhhceeE-EecCCccC--CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCC
Confidence 12333 45543322 2256666665433222221 111123456677777653 345677999
Q ss_pred ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+||+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998753
No 106
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.6e-31 Score=231.42 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=129.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++||++.|++... .+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 4 ~~l~~~~l~~~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDAAT--YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCCCc--cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 47999999999975211 26799999999999999999999999999999999998 99999 46664221
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
...+. ++++..... ...++.++..+.....+.........+..+++.+++. .+..+..||+||+||+++|++++
T Consensus 79 ~~~~i~~-~~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 79 VRRQVGM-VFQNPDNQF-VGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HhhheEE-EEeCHHHhc-ccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 12343 555431111 1146666665443333332222234467788887775 45677899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+.+++.+.++|.+
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 107
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.9e-31 Score=231.71 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=130.8
Q ss_pred ceEEEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
++|+++||++.|++ .. +++++||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 4 YILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred ceEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcch
Confidence 47999999999963 22 6799999999999999999999999999999999998 99999 4665322
Q ss_pred ----CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 ----~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a 220 (255)
+...|. ++++.. .+. ..++.++..+.....+++.......+..+++.+++. .+..+..||+||+||+++|
T Consensus 77 ~~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 77 LMKLRESVGM-VFQDPDNQLF--SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred HHHHHhhEEE-EecCcchhhc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHH
Confidence 112344 555532 222 246667665544334433222234567788888876 4677889999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.+|++||+||||++||+.+++.+.+++.+.
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l 187 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM 187 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988653
No 108
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=6.7e-31 Score=219.20 Aligned_cols=162 Identities=16% Similarity=0.115 Sum_probs=124.2
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------CC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~~ 149 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ..
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 46889999998744 7799999999999999999999999999999999997 99999 4555321 11
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..+. +.++... ...+++.++........+ .......++++.+++. .+.++..||+||+||+++|++++.+|
T Consensus 74 ~i~~-~~q~~~~--~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 74 NILY-LGHLPGL--KPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred heEE-eccCccc--ccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 2333 3433221 122566666554332222 1123466778887775 35677899999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|+||||++||+..++.+.+++.+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~ 172 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRA 172 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 109
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.1e-31 Score=231.19 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=126.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
|++++||++.|++. .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ml~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 1 MIRLENVSYSYPDG-TP--ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred CEEEEEEEEEcCCC-Cc--eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHH
Confidence 47899999999532 12 6799999999999999999999999999999999997 99999 45553221
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
...+. +.++..... ...++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++++
T Consensus 75 ~~~~i~~-v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 75 IRKLVGI-VFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HHhheEE-EEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 12343 455432111 1146666665443333332222234466778888775 35677899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+.++..+.+++.+
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 181 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKK 181 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 110
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.97 E-value=6.5e-31 Score=229.08 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=125.4
Q ss_pred ceEEEccceeeccccc-----cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-
Q 025256 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~-----~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~- 148 (255)
++|+++||++.|+... ....+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 4699999999996310 01237799999999999999999999999999999999998 99999 45553211
Q ss_pred -------CCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchh
Q 025256 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv 217 (255)
...+. ++++........+++.++....... .+.........+.++++.+++. .+..+..||+||+||+
T Consensus 80 ~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 158 (267)
T PRK15112 80 GDYSYRSQRIRM-IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158 (267)
T ss_pred CchhhHhccEEE-EecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence 12333 4554321111123333333332221 1221111224567788888874 3456779999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 194 (267)
T PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998875
No 111
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.9e-31 Score=227.77 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=127.8
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC---
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK--- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~--- 147 (255)
.+++++++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|++... +|++|+ .+++...
T Consensus 9 ~~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred cceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 367899999999998643 679999999999999999999999999999999998510 127998 4555321
Q ss_pred -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
....+. +.++.. ++. .++.++..+.....+.........+.++++.+++. .+..+..||+||+
T Consensus 85 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 85 DVDVVELRKNVGM-VFQKPN-PFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred cchHHHHhhhEEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 112333 444432 222 46667665543333322111123356677777652 3456779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 200 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998763
No 112
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=225.78 Aligned_cols=164 Identities=14% Similarity=0.079 Sum_probs=125.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 45789999999997643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~ 222 (255)
+...+. ++++... +. .++.++....... .........++++.+++. .+..+..||+||+||+++|++
T Consensus 74 ~~~~~i~~-~~q~~~~-~~--~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 74 DLRRKIGM-VFQQPHL-FE--GTVKDNIEYGPML----KGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred HhhhcEEE-EecCchh-ch--hhHHHHHhcchhh----cCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 112333 5555332 21 2444443321111 111234566788888885 356778999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|++||+||||++||+..++.+.++|.+
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875
No 113
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.8e-31 Score=230.84 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=126.3
Q ss_pred EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---------
Q 025256 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------- 148 (255)
Q Consensus 79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------- 148 (255)
.++++++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 4679999998754 6799999999999999999999999999999999997 99999 46553211
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
...+. +.++.... ..+++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|+++
T Consensus 99 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 99 LRRKKISM-VFQSFALL--PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhcCcEEE-EecCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 12343 55443222 2256666665543222322212234456788888875 3567789999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+..++.+.++|.+
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 205 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLR 205 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 114
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=6.6e-31 Score=243.40 Aligned_cols=178 Identities=19% Similarity=0.203 Sum_probs=143.9
Q ss_pred ccceEEEccceeecccc-------ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC
Q 025256 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~-------~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~ 145 (255)
..++++++||+|.|... ...+.+++||||++.+||++||+|+||||||||+|+|+|++. |++|. .+++.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 45789999999999841 124668999999999999999999999999999999999998 99999 56664
Q ss_pred CC---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCcc
Q 025256 146 VK---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (255)
Q Consensus 146 ~~---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G 212 (255)
.. ......++++|.+.-.++.+++.+.+.......+. ........+.++++.+++. .+.++.+||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 31 01234567888887766667777666665544332 2222334577889999987 46889999999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||||+++||||+.+|++||+|||++.||+..+..+.++|.+.
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l 475 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 115
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=1.2e-30 Score=221.53 Aligned_cols=171 Identities=19% Similarity=0.183 Sum_probs=126.3
Q ss_pred eEEEccceeecccc---ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccC--CC--CC-
Q 025256 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--SQ--VK- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~---~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~--~~--~~- 147 (255)
|++++|+++.|+.. .....+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .++ +. ..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 47899999999631 011236799999999999999999999999999999999997 99999 454 21 11
Q ss_pred --C---------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccc
Q 025256 148 --P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV 213 (255)
Q Consensus 148 --~---------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~ 213 (255)
. ...+. +.++... + ..+++.++..+.....+...........++++.+++.. +..+..||+||
T Consensus 78 ~~~~~~~~~~~~~~i~~-~~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 78 QASPREVLEVRRKTIGY-VSQFLRV-I-PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE 154 (224)
T ss_pred hcCHHHHHHHHhcceEE-Eeccccc-C-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence 0 12333 5554332 1 22456555544322233322222345567888888753 45678999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 116
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.9e-31 Score=231.54 Aligned_cols=172 Identities=11% Similarity=0.061 Sum_probs=129.3
Q ss_pred eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
.++++||++.|++... ...+|+++||+|++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4889999999964210 1227799999999999999999999999999999999998 99999 4665321
Q ss_pred -----CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256 148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 -----~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (255)
+...|. ++++.. .++. .++.++..+.....++........+.++++.+++. .+..+..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 79 YIRPVRKRIGM-VFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred hHHHHHhheEE-EecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 112344 555431 1221 35666665443333333222234567788888885 24677899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l 191 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998753
No 117
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2e-30 Score=218.99 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=126.5
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----C
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----P 149 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----~ 149 (255)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.... .
T Consensus 10 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 10 PLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred ceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhhh
Confidence 5799999999998643 6799999999999999999999999999999999997 99999 46653221 1
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..+. +.++... ...+++.++........+ ........++++.+++. .+..+..||+||+||+++|++++.+|
T Consensus 83 ~i~~-~~q~~~~--~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 83 FMAY-LGHLPGL--KADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred ceEE-eecCccc--ccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1333 4443322 122466666544332222 11233456777877765 36677799999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|+||||++||+..++.+.+++.+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISA 182 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999864
No 118
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=5.6e-31 Score=224.44 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=121.7
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------- 147 (255)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46899999998643 7799999999999999999999999999999999998 99999 4555321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc-C--CCCCCCCCCCccccchhhhhhhhc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-N--QGSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~-l--~~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....+. ++++... + ..+++.++..+.....+. ........+++.++ + ..+.++..||+||+||+++|++++
T Consensus 74 ~~~i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 74 RAGIAY-VPQGREI-F-PRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred HhCeEE-eccCCcc-c-CCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 112333 4444332 2 224666655443222221 11223345555554 2 246777899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+++|+||||++||+.+++.+.++|.+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 119
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=8.9e-31 Score=226.91 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=128.3
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
.+++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++....
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence 4689999999998643 6799999999999999999999999999999999997 99999 45553211
Q ss_pred ---------------CCeeEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCC
Q 025256 149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSF 209 (255)
Q Consensus 149 ---------------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~l 209 (255)
...+. +.++... + ..+++.++..+... ..+...........++++.+++.. +..+..|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~-v~q~~~l-~-~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTM-VFQHFNL-W-SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred cccccccchHHHHHhhceEE-EecCccc-C-CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 12333 4554332 1 12566666544221 122221122345677888888863 4567899
Q ss_pred CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 198 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998753
No 120
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=226.47 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=125.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~----- 147 (255)
.+++++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|++... +|++|+ .+++...
T Consensus 3 ~~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 3 KRIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred ccEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 3689999999998643 779999999999999999999999999999999998510 126998 4555321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (255)
....+. +.++.... ..+++.++........+. ........+.++++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 79 DPVAVRRTIGM-VFQRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred ChHHHhcceEE-EccccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 112333 44443222 225666666543322221 1111123456677777652 35667799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 121
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=224.71 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=126.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCCC---
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVKP--- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~~--- 148 (255)
.++|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++.. ..|++|+ .+++....
T Consensus 4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 36899999999997643 67999999999999999999999999999999998631 0147898 45553211
Q ss_pred -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
...+. +.++.. ++. .++.++..+.....+.. .......+.++++.+++. .+..+..||+||+
T Consensus 80 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 80 VDVVELRRRVGM-VFQKPN-PFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ 155 (253)
T ss_pred cCHHHHhhcEEE-EecCCC-CCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 12333 555433 222 36666665443333321 111233456677777763 2456779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 122
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=1.1e-30 Score=218.61 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=122.2
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------P 149 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------~ 149 (255)
++++||++.|++.. +++++||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++.... .
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 46899999998643 6799999999999999999999999999999999997 99999 45553211 1
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..+. +.++.. +. ...++.++..... . ......+.++++.+++. .+..+..||+||+||+++|++++.+|
T Consensus 74 ~i~~-~~q~~~-~~-~~~tv~e~l~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 74 GLLY-LGHAPG-IK-TTLSVLENLRFWH-----A-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred heEE-eccccc-cC-CCcCHHHHHHhhc-----c-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2232 333322 11 1245555443321 1 11345567788888776 35667799999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|+||||++||+..++.+.++|.+
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAG 170 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 123
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.5e-30 Score=207.07 Aligned_cols=173 Identities=17% Similarity=0.114 Sum_probs=139.6
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|++++++|..+.....+.+|++|+|.|++||.++|+||||||||||+-+++|+.. |++|+ ++.++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHH
Confidence 379999999999887677789999999999999999999999999999999999998 99999 4444321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC--CCCCCCCccccchhhhh
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~--~~~~~lS~G~~qrv~~a 220 (255)
....|. +++.-..++ .++..||........|-............++.++++.. -++.+||||++|||++|
T Consensus 82 rA~~R~~~vGf-VFQSF~Lip--~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 82 RAALRARHVGF-VFQSFHLIP--NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHhhccceeE-EEEeeeccc--cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence 233454 444333233 37888888776666663222334456789999999854 56789999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||++..|+||+.||||..||...-+++.+++...
T Consensus 159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l 192 (228)
T COG4181 159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL 192 (228)
T ss_pred HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999998653
No 124
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=1.5e-30 Score=224.90 Aligned_cols=170 Identities=14% Similarity=0.161 Sum_probs=124.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC-----C--
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----K-- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~-----~-- 147 (255)
++++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|++. |++|+ .+++.. .
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 4699999999998643 6799999999999999999999999999999999998 99999 455432 1
Q ss_pred -C---------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccc
Q 025256 148 -P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 148 -~---------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~ 213 (255)
. ...+. +.++........+++.++.......... ........+.++++.+++. .+..+..||+||
T Consensus 75 ~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 75 LSEAERRRLMRTEWGF-VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred CCHHHHHHhhhcceEE-EEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence 0 11233 4554321111112333333221111111 1111234567788888874 245677999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 193 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 125
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.97 E-value=1.4e-30 Score=227.10 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=126.6
Q ss_pred cceEEEccceeeccccc-----cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~-----~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~- 147 (255)
|++|+++||++.|++.. ....+++|+||++++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence 56899999999997310 01126799999999999999999999999999999999997 99999 4555321
Q ss_pred ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccc
Q 025256 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~ 213 (255)
....+. +.++.........++.++..+.... .+.........+.++++.+++. .+..+..||+||
T Consensus 78 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 78 KLNRAQRKAFRRDIQM-VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred ccChhHHHHHHhcEEE-EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence 112333 5555321111123444443322111 1211111223467788888875 356778999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 196 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 126
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=228.04 Aligned_cols=170 Identities=13% Similarity=0.159 Sum_probs=128.3
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
++++++|+++.|++..+. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 6 ~~l~~~nl~~~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE 80 (271)
T ss_pred eEEEEEeEEEEcCCCCcc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence 579999999999631112 6799999999999999999999999999999999997 99999 4555321
Q ss_pred -CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 -~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
+...+. +.++.. .+. ..++.++........++........+.++++.+++. .+..+..||+||+||+++|+++
T Consensus 81 ~~~~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (271)
T PRK13632 81 IRKKIGI-IFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL 157 (271)
T ss_pred HhcceEE-EEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 112333 555531 111 246666665433222222111223456778888775 4667789999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+.+|++||+||||++||+..++.+.++|.+
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 127
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=229.24 Aligned_cols=173 Identities=15% Similarity=0.132 Sum_probs=128.3
Q ss_pred ceEEEccceeecccccc--ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----
Q 025256 76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~--~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---- 148 (255)
++++++|+++.|++... ...+|+++||+|++|++++|+||||||||||+++|+|++. |++|+ .+++....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 57999999999974210 1227799999999999999999999999999999999997 99999 45553221
Q ss_pred -----CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 -----~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a 220 (255)
...|. ++++.. .+.. .++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|
T Consensus 80 ~~~~~~~i~~-v~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 80 LWDIRNKAGM-VFQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred HHHHhhheEE-EecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 12333 455432 1111 24445444433333332222234567788888775 3567789999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 190 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL 190 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 128
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-30 Score=231.67 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=129.3
Q ss_pred cceEEEccceeeccccc-cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~-~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
.++|+++||++.|+... ....+|+++||+|++|++++|+|+||||||||+++|+|++. |++|+ .+++...
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEcccccc
Confidence 36899999999997421 11237799999999999999999999999999999999998 99999 4554211
Q ss_pred -------------------CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCC
Q 025256 148 -------------------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSV 204 (255)
Q Consensus 148 -------------------~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~ 204 (255)
+...+. ++++.. .+.. .++.++..+.....+.........+.++++.+++. .+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSM-VFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccccccchHHHHHhcEEE-EEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 112344 555532 2222 35666554433222322222233456788888885 356
Q ss_pred CCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 205 ~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+..||+||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~ 221 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD 221 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999999865
No 129
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.6e-30 Score=216.06 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=124.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
|++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 478999999998643 6799999999999999999999999999999999997 99999 46654321
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...+. +.++... + ..+++.++..+... .. .......++++.+++.. +..+..||+||+||+++|++++.+
T Consensus 74 ~~i~~-~~q~~~~-~-~~~tv~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 145 (200)
T PRK13540 74 KQLCF-VGHRSGI-N-PYLTLRENCLYDIH---FS--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145 (200)
T ss_pred hheEE-ecccccc-C-cCCCHHHHHHHHHh---cC--cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 12333 4433321 1 22566665543211 11 12235677888777753 455678999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+.+++.+.++|.+
T Consensus 146 p~~lilDEP~~~LD~~~~~~l~~~l~~ 172 (200)
T PRK13540 146 AKLWLLDEPLVALDELSLLTIITKIQE 172 (200)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=9.7e-31 Score=226.01 Aligned_cols=166 Identities=15% Similarity=0.139 Sum_probs=124.4
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------- 147 (255)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 46889999998643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred ------------CCCeeEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCcc
Q 025256 148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG 212 (255)
Q Consensus 148 ------------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G 212 (255)
....+. +.++.... ...++.++...... ..+.........+.++++.+++. .+..+..||+|
T Consensus 74 ~~~~~~~~~~~~~~~i~~-v~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGM-VFQSFNLF--PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred ccccchhHHHHHhhCeEE-EecCcccC--CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 112333 44443322 22466666544221 12222111223456778887775 34566799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
No 131
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=224.77 Aligned_cols=169 Identities=14% Similarity=0.138 Sum_probs=126.5
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~- 147 (255)
.++++++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|++. | ++|+ .+++...
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 35799999999998643 6799999999999999999999999999999999996 5 4888 4555321
Q ss_pred ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcCC------CCCCCCCCCc
Q 025256 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (255)
Q Consensus 148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~ 211 (255)
+...+. +.++... +. .++.++..+.....+.... .......+.++.+++. .+..+..||+
T Consensus 78 ~~~~~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 153 (254)
T PRK14273 78 SNNFDILELRRKIGM-VFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG 153 (254)
T ss_pred cccccHHHHhhceEE-Eeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence 112333 5555432 21 5777766554322222111 1123456667766652 4567789999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 196 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 132
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=228.48 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=126.6
Q ss_pred eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
.++++||++.|++... ...+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 3889999999975210 0126799999999999999999999999999999999997 99999 45553211
Q ss_pred ------CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256 149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 149 ------~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (255)
...+. +.++.. .++. .++.++..+.....+.........+.++++.+++. .+..+..||+||+||++
T Consensus 79 ~~~~~~~~i~~-~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 79 DIKQIRKKVGL-VFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred CHHHHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 12333 555531 2221 36666665433333322111223456777887775 25677899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK 190 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865
No 133
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=225.95 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=125.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 689999999998643 6799999999999999999999999999999999997 99998 4555321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHH----hcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~----~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
....+. +.++.... ..+++.++..+... .++.........+..+++.+++. .+..+..||+||+||+++|+
T Consensus 75 ~~~i~~-~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 75 ARRLAL-LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred hhheEE-ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 112343 45443321 22455555433210 01111111233456777777775 36677899999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|++||+||||++||+.+++.+.++|.+
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865
No 134
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=9e-31 Score=236.51 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=126.6
Q ss_pred eeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------------CCCe
Q 025256 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------PPDV 151 (255)
Q Consensus 85 k~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------------~~~~ 151 (255)
|.|++.. +++++||+|++||+++|+||||||||||+++|+|++. |++|+ .++|... +...
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4566644 7899999999999999999999999999999999998 99999 4666321 1234
Q ss_pred eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
+. +.++... + +++++.+|..+.....+.........+.++++.+++. .+.++..|||||+||+++||||+.+|++
T Consensus 74 ~~-v~Q~~~l-~-~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 74 GM-VFQQFAL-F-PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred EE-EECCCcC-C-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 54 5544332 2 2368888887765555543333345677888888886 4667889999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 230 VIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 230 lilDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||||++||+..++++.+++.+.
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKL 175 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998653
No 135
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=226.81 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=135.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQV------- 146 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~------- 146 (255)
+++++||+..|......+.+++||||++++||++||+|.|||||||+.+.|+|++.. ..-.+|+ .|+++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 378999999997654456688999999999999999999999999999999999941 0113566 466641
Q ss_pred ----CCCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCC-CCCCcHHHHHHHHHhhcCCC-----CCCCCCCCccccc
Q 025256 147 ----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA-PWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGD 215 (255)
Q Consensus 147 ----~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~-~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~G~~q 215 (255)
.+.....+|++|...-.++-+++.+........ .+. ..........++|+.+++.. +.|+.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 234445558888765444334443333332222 122 12234557788999999873 6788999999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||.||.|++.+|++||.||||++||...+.++.++|.+.
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l 199 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL 199 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999864
No 136
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=225.50 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=126.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~---- 147 (255)
.++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++.. .|++|+ .+++...
T Consensus 17 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 45799999999998643 679999999999999999999999999999999998510 138998 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC--CCCcHHHHHHHHHhhcCC------CCCCCCCCCccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (255)
+...+. +.++... +. .++.++..+.....+.. .......+..+++.+++. .+..+..||+||
T Consensus 93 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 93 LDVVELRARVGM-VFQKPNP-FP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred cchHHHhhceEE-EecCCCC-CC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 112343 4444322 22 25666665433222321 111123456778877774 245678999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l 209 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 137
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-30 Score=219.54 Aligned_cols=164 Identities=14% Similarity=0.112 Sum_probs=122.3
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
|+++|+++.|++.. .++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 46889999997532 39999999999999999999999999999999997 99999 4555321 112
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. +.++.... ..+++.++..+...............+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 72 i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 72 VSM-LFQENNLF--AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred EEE-EecccccC--CCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 343 55554322 2245655554321110001112234567788888775 356677999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+..++.+.++|.+
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 138
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=5.5e-31 Score=211.41 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=126.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCCe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV 151 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~~ 151 (255)
++.+++|.+.|+... -..+++|..||+++|+|||||||||||++|+|.+. |.+|+ .+++... +...
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 367889999998854 67889999999999999999999999999999997 99999 4666432 1122
Q ss_pred -eEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 152 -ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 152 -g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..++++++.. + .++++.+|+..... -++ ....+.+.+..++..+++. .+..+.+|||||||||++||+++.+.
T Consensus 72 PVSmlFQEnNL-F-aHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 72 PVSMLFQENNL-F-AHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred Chhhhhhcccc-c-hhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence 2223444332 2 23666655433110 111 1233556677888888886 46677899999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|+++||||+.|||.-+.++..++...
T Consensus 149 PilLLDEPFsALdP~LR~eMl~Lv~~l 175 (231)
T COG3840 149 PILLLDEPFSALDPALRAEMLALVSQL 175 (231)
T ss_pred CeEEecCchhhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999988654
No 139
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=223.72 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=125.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~---- 147 (255)
|++|+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++... .|++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 45799999999998643 679999999999999999999999999999999998510 027898 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
....+. +.++... +. .++.++..+.....+.. .......+.+.++.+++. .+..+..||+||+
T Consensus 77 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 77 LDVTEYRKKVGM-VFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred hhHHHhhhhEEE-EecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHH
Confidence 112333 4554332 21 46666665433222221 111223345667766663 3456779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++++.+|+++|+||||++||+.++..+.++|.+
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE 191 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 140
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=227.09 Aligned_cols=169 Identities=18% Similarity=0.110 Sum_probs=125.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
-++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 9 ~~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 9 DTTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK 81 (265)
T ss_pred CceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence 35799999999997643 7799999999999999999999999999999999997 99999 4555321
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cC---CCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g---~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
....+. +.++....+ .+++.++..+.... .+ .........+.++++.+++. .+.++..||+||+||+++
T Consensus 82 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 158 (265)
T PRK10575 82 AFARKVAY-LPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWI 158 (265)
T ss_pred HHhhheEE-eccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHH
Confidence 112333 444422211 24555544332110 01 11111233456778888775 356778999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 141
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=3.6e-30 Score=222.78 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=124.2
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCcc-ccCCCCCC---
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVKP--- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p----~~G~-~~~~~~~~--- 148 (255)
+++++||++.| +.. +++++||++++|++++|+||||||||||+++|+|+++ | ++|+ .+++....
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 68999999999 333 6799999999999999999999999999999999997 7 8998 45553221
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-----CCCCCCCCccccchhhhh
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~G~~qrv~~a 220 (255)
...+. ++++....+....++.++........+.. .....+.++++.+++.. +..+..||+||+||+++|
T Consensus 76 ~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 76 LRGRKIAT-IMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred cccceEEE-EecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence 12333 55554211111223333332222222321 22355678888888764 567789999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++++.+|++||+||||++||+.+++.+.+++.+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 142
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=222.88 Aligned_cols=168 Identities=14% Similarity=0.089 Sum_probs=126.5
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~- 147 (255)
.++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ | ++|+ .+++...
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred ccEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEecc
Confidence 36899999999997643 6799999999999999999999999999999999985 4 7898 4555321
Q ss_pred ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCc
Q 025256 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (255)
Q Consensus 148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~ 211 (255)
....+. +.++... +. .++.++..+.....+.. .........++++.+++. .+..+..||+
T Consensus 75 ~~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGM-VFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEE-EecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 112343 5555432 21 46666665433333321 111123445677777653 3566789999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+++|++++.+|+++|+||||++||+.+++.+.++|.+
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 143
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=2.6e-30 Score=223.36 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=121.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (255)
++++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|++ +++. ...+.
T Consensus 3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~- 71 (251)
T PRK09544 3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGY- 71 (251)
T ss_pred cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEE-
Confidence 4799999999998643 6799999999999999999999999999999999997 999984 4431 23443
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ilil 232 (255)
+.++... +. .++ ..... ...+........+..+++.+++.. +.++..||+||+||+++|++++.+|+++|+
T Consensus 72 v~q~~~~-~~-~l~--~~~~~---~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 72 VPQKLYL-DT-TLP--LTVNR---FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred ecccccc-cc-ccC--hhHHH---HHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4544321 11 011 01111 111111122345677888887763 566779999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHh
Q 025256 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 DEp~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||+.+++.+.++|.+
T Consensus 145 DEPt~~LD~~~~~~l~~~L~~ 165 (251)
T PRK09544 145 DEPTQGVDVNGQVALYDLIDQ 165 (251)
T ss_pred eCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 144
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-30 Score=227.44 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=127.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+++++||++.|++. .. +++++||+|++||+++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 1 ~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 1 ILETRDLKYSYPDG-TE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred CEEEEEEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence 47899999999642 12 6799999999999999999999999999999999997 99999 46553221
Q ss_pred ---CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. ++++.. .+.. .++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 75 ~~~~~i~~-v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 75 EVRKTVGI-VFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred HHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 12333 556532 1221 46666665433222322112234567788888875 456778999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++.+|+++|+||||++||+.++..+.+++.+.
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 183 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998753
No 145
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-30 Score=225.62 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=126.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
.++++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 5 ~~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 35799999999997521 126799999999999999999999999999999999997 99999 46553221
Q ss_pred ---CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. +.++.. .++ ..++.++..+.....+.........+..+++.+++. .+..+..||+||+||+++|++
T Consensus 80 ~~~~~i~~-v~q~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 156 (269)
T PRK13648 80 KLRKHIGI-VFQNPDNQFV--GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGV 156 (269)
T ss_pred HHHhheeE-EEeChHHhcc--cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 12343 555432 111 123344443332222222112223456778888775 356677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|++||+||||++||+..++.+.+++.+
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 146
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=223.83 Aligned_cols=172 Identities=12% Similarity=0.069 Sum_probs=126.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~---- 147 (255)
..+++++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|++. ...|++|+ .+++...
T Consensus 11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 45799999999998633 6799999999999999999999999999999999984 11147898 4555221
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
+...+. +.++... +. .++.++..+..... +...........++++.+++. .+..+..||+||+
T Consensus 87 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 87 QDIALLRAKVGM-VFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred cchHHHhcceEE-EecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence 112333 4554332 21 45656554432222 222111223456777877763 3556789999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|++||+||||++||+.+++.+.+++.+.
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 202 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 147
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-30 Score=223.71 Aligned_cols=169 Identities=16% Similarity=0.137 Sum_probs=125.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP----- 149 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~----- 149 (255)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence 3699999999997643 7799999999999999999999999999999999997 99999 455532110
Q ss_pred --CeeE-EEecCCCCCcCccCCcccChHHHHHh-------cCCCC------C--CcHHHHHHHHHhhcCC--CCCCCCCC
Q 025256 150 --DVAT-VLPMDGFHLYLSQLDAMEDPKEAHAR-------RGAPW------T--FNPLLLLNCLKNLRNQ--GSVYAPSF 209 (255)
Q Consensus 150 --~~g~-~i~~d~~~~~~~~l~~~e~~~~~~~~-------~g~~~------~--~~~~~~~~~l~~l~l~--~~~~~~~l 209 (255)
..+. +++++... + ..+++.++..+.... .++.. . .......++++.+++. .+.++..|
T Consensus 77 ~~~~~i~~~~q~~~~-~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 77 IARMGVVRTFQHVRL-F-REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHhcCeEEeccCccc-C-CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 1111 23444322 1 235666665543210 01100 0 1113456677777775 36677899
Q ss_pred CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 198 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE 198 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999865
No 148
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=2.5e-30 Score=222.03 Aligned_cols=167 Identities=19% Similarity=0.072 Sum_probs=121.6
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCcc-ccCCCCCC------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~~~~~~------ 148 (255)
|+++||++.|++.. +++++||+|++|++++|+||||||||||+|+|+|++ . |++|+ .+++....
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 46899999998643 679999999999999999999999999999999994 4 89999 45553211
Q ss_pred -CC--eeEEEecCCCCCcCccCCcccChHHHHHhc-CCC-----C-CCcHHHHHHHHHhhcCC---CCCCCC-CCCcccc
Q 025256 149 -PD--VATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAP-----W-TFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 214 (255)
Q Consensus 149 -~~--~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~-----~-~~~~~~~~~~l~~l~l~---~~~~~~-~lS~G~~ 214 (255)
.. .+. +.++.... ..+++.++........ ... . ......+.++++.+++. .+..+. .||+||+
T Consensus 74 ~~~~~i~~-v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 74 RARAGLFL-AFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred hhccceEe-eecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 11 222 44443221 2245555554432211 110 0 01123456788888875 234555 4999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 149
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=3.2e-30 Score=218.87 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=124.9
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----CCee
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDVA 152 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----~~~g 152 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.... ...+
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 46889999998643 6799999999999999999999999999999999997 99999 45553211 1233
Q ss_pred EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~il 230 (255)
. +.++.... ..+++.++........+ .......++++.+++. .+..+..||+||+||+++|++++.+|+++
T Consensus 74 ~-~~q~~~~~--~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 74 S-LIESPPLY--ENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred E-EcCCCCcc--ccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3 44433221 12466666544332222 1234567788888876 35567799999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHh
Q 025256 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 ilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||||++||+.+++.+.+++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~ 169 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRS 169 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 150
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=3e-30 Score=217.61 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=123.1
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
++++||++.|+. .+.++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 368899999974 3479999999999999999999999999999999998 99999 4655321 112
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. +.++.... ..+++.++..+.................++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 72 i~~-v~q~~~~~--~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 72 VSM-LFQENNLF--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred eEE-EeccCccC--CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 333 45543322 2246666654322111111111233456788888775 356677999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+||||++||+.+++.+.++|.+.
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQL 174 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998753
No 151
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-30 Score=249.32 Aligned_cols=177 Identities=16% Similarity=0.158 Sum_probs=133.7
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~----- 147 (255)
.+++|+++||++.|+.......+++++||++++|+++||+||||||||||+|+|+|++. |++|++ +++...
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEeccccc
Confidence 46789999999999642112237799999999999999999999999999999999997 899984 444100
Q ss_pred ----------------C-CCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC-----CCC
Q 025256 148 ----------------P-PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSV 204 (255)
Q Consensus 148 ----------------~-~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~-----~~~ 204 (255)
+ ...|. +.++........+++.++..+.... .++........+.++++.+++. .+.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~-v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 164 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAM-IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR 164 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEE-EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence 0 13444 5555311112235777777654432 2332222234567889999884 357
Q ss_pred CCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 205 ~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++.+|||||+|||++|+||+.+|++||+||||++||+..++++.+++.+.
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l 214 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999998763
No 152
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.2e-30 Score=222.93 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=126.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCCC---
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVKP--- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~~--- 148 (255)
.++++++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|++. ..+|++|+ .+++....
T Consensus 10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 46899999999998643 6799999999999999999999999999999999984 11126898 45553211
Q ss_pred -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
...+. ++++... +. .++.++..+.....+... ......+.++++.+++. .+..+..||+||+
T Consensus 86 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 86 VDLVELRKNIGM-VFQKGNP-FP--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred cCHHHHhhceEE-EecCCcc-cc--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 12333 5555432 22 256666544332222211 11123345667777663 3456779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|+++|+||||++||+.++..+.++|.+.
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 201 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998763
No 153
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-30 Score=222.29 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=125.5
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCcc-ccCCCCC----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK---- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p---~~G~-~~~~~~~---- 147 (255)
++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+... .| ++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL-NPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccccc-CCCCCccceEEECCEECcCcc
Confidence 4799999999998643 67999999999999999999999999999999998420 15 5898 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
+...+. ++++... +. .++.++..+.....+... ......+..+++.+++. .+..+..||+||+
T Consensus 79 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 79 TDTVDLRKEIGM-VFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred cchHhhhhcEEE-EecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence 112333 5555432 22 466676654433333221 11123445667777653 3466779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998763
No 154
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-30 Score=222.85 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=122.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
|++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 46899999999997643 7799999999999999999999999999999999997 99999 46653211
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhh-cCC--CCCCCCCCCccccchhhhhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
...+. +.++... + ..+++.++........ ........+..+++.+ ++. .+.++..||+||+||+++|+
T Consensus 76 ~~~~~~i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 76 KIMREAVAI-VPEGRRV-F-SRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHHHhCEEE-eccCccc-C-CCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 12333 4444322 2 1245555554321111 1111112334445554 232 34567799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+|+++|+||||++||+..++.+.+++.+
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 155
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=245.14 Aligned_cols=168 Identities=18% Similarity=0.166 Sum_probs=127.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999999998643 6799999999999999999999999999999999997 99999 4665321
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHHhc---C-CCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~---g-~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~ 219 (255)
....+. +.++.... ..+++.++..+..... + .........+.++++.+++.. +.++..||+||+||+++
T Consensus 76 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 152 (501)
T PRK10762 76 SQEAGIGI-IHQELNLI--PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI 152 (501)
T ss_pred HHhCCEEE-EEcchhcc--CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence 112344 55553221 2356666554422111 1 001111234567888888763 56678999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++|+.+|++||+||||++||+..++++.+++.+
T Consensus 153 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 153 AKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred HHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998875
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.9e-30 Score=227.44 Aligned_cols=172 Identities=12% Similarity=0.036 Sum_probs=126.2
Q ss_pred ceEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
..|+++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence 45899999999975321 1226799999999999999999999999999999999997 99999 4555321
Q ss_pred -------CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccch
Q 025256 148 -------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (255)
Q Consensus 148 -------~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qr 216 (255)
+...+. +.++.. .... .++.++..+.....+.........+..+++.+++. .+..+..||+||+||
T Consensus 82 ~~~~~~~~~~i~~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 82 IKEVKRLRKEIGL-VFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred cccHHHHhccEEE-EEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 112333 455431 1111 35556554433222221111123455677877773 356778999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 195 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER 195 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998865
No 157
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.97 E-value=3.3e-30 Score=234.02 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=126.2
Q ss_pred cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC-----CCC-------
Q 025256 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-----VKP------- 148 (255)
Q Consensus 82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~-----~~~------- 148 (255)
++.+.|+... +++|+||+|++|++++|+||||||||||+++|+|++. |++|+ .++++ ...
T Consensus 29 ~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~ 101 (382)
T TIGR03415 29 EILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR 101 (382)
T ss_pred HHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence 4555665543 7899999999999999999999999999999999998 99999 46652 110
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. ++++.... +.+++.+|..+.....+...........++++.+++. .+.++.+||+||+||+++|++
T Consensus 102 ~~r~~~i~~-vfQ~~~l~--p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA 178 (382)
T TIGR03415 102 RLRTHRVSM-VFQKFALM--PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA 178 (382)
T ss_pred HHhcCCEEE-EECCCcCC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 13444 55544322 2367788877655444443333345667888988886 366778999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|+|||+||||++||+..+.++.++|.+
T Consensus 179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 179 FAMDADILLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 158
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=2.1e-30 Score=214.86 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=114.5
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----------CCeeEEEecCCC-CCc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----------PDVATVLPMDGF-HLY 163 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----------~~~g~~i~~d~~-~~~ 163 (255)
+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++.... ...+. +.++.. .++
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~ 82 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGL-VFQDPDDQLF 82 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEE-EecChhhccc
Confidence 6799999999999999999999999999999999997 99999 45553211 12333 455432 122
Q ss_pred CccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 164 ~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
. .++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+++|+||||++||+
T Consensus 83 ~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 83 A--ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred c--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 1 46666665433222222111223456777877775 4567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 025256 242 GVWKDVSSMFDE 253 (255)
Q Consensus 242 ~~~~~l~~ll~~ 253 (255)
..++.+.++|.+
T Consensus 161 ~~~~~~~~~l~~ 172 (190)
T TIGR01166 161 AGREQMLAILRR 172 (190)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 159
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-30 Score=244.83 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=128.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~~~~~---- 147 (255)
+++++++|+++.|++.. +++++||++++|++++|+||||||||||+|+|+|+++ | ++|+ .+++...
T Consensus 3 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 3 EYLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred CceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence 35799999999998643 7799999999999999999999999999999999995 5 7999 4555321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhc--C-CCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchh
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~--g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv 217 (255)
+...+. ++++... + ..+++.++..+..... + .........+.++++.+++. .+.++..||+||+||+
T Consensus 76 ~~~~~~~~i~~-v~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 152 (506)
T PRK13549 76 IRDTERAGIAI-IHQELAL-V-KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV 152 (506)
T ss_pred HHHHHHCCeEE-EEecccc-C-CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 122444 5555332 1 2356666554422111 1 11111223467788888875 3567789999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|++|+.+|++||+||||++||+..+.++.++|.+
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 160
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.1e-30 Score=221.07 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=123.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~- 147 (255)
|++++++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ | ++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 46799999999998643 6799999999999999999999999999999999985 5 4888 4554221
Q ss_pred --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcc
Q 025256 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (255)
+...+. +.++... +. .++.++..+.....+... ......+.+.++.+++. .+..+..||+|
T Consensus 74 ~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 149 (249)
T PRK14253 74 GNIDVADLRIKVGM-VFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG 149 (249)
T ss_pred cccchHHHHhheeE-EecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence 112333 4444332 21 455565544322222211 11122345566666542 24566799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 191 (249)
T PRK14253 150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 161
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.7e-30 Score=220.97 Aligned_cols=171 Identities=17% Similarity=0.120 Sum_probs=125.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCcc-ccCCCCCC----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVKP---- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~~~~~~---- 148 (255)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+.....| ++|+ .+++....
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence 5789999999998643 67999999999999999999999999999999997310013 4898 46653221
Q ss_pred ------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (255)
...+. ++++... +. .++.++..+.....+... ......+.++++.+++. .+..+..||+||+|
T Consensus 78 ~~~~~~~~i~~-v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 78 QVDELRKNVGM-VFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred cHHHHhhheEE-EecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 12333 5555432 22 366666654332222211 11223456777777763 24566799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999763
No 162
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=1.7e-30 Score=220.86 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=122.0
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEEEe
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP 156 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~i~ 156 (255)
+.++++++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++..... ..
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~-----~~ 90 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSL-----LG 90 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchh-----hc
Confidence 77899999998854 7799999999999999999999999999999999997 88988 355432110 00
Q ss_pred cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE 234 (255)
.+.. ....+++.++........+...........++++.+++.. +..+..||+||+||+++|++++.+|+++|+||
T Consensus 91 -~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 91 -LGGG-FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred -cccc-CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0111 1123566666655433333221112234566777777653 56678999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHh
Q 025256 235 NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~ 253 (255)
||++||+.+++.+.+++.+
T Consensus 169 P~~gLD~~~~~~~~~~l~~ 187 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRE 187 (224)
T ss_pred CcccCCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 163
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-30 Score=220.06 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=122.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------C
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------P 149 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------~ 149 (255)
+++++||++.|++. ..++||++++|++++|+||||||||||+++|+|++. |++|+ .+++.... .
T Consensus 1 ~l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 47899999999752 248999999999999999999999999999999997 99999 46653211 1
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
..+. +.++... + ..+++.++..+.... +.. .......+.++++.+++. .+..+..||+||+||+++|++++.+
T Consensus 72 ~i~~-~~q~~~~-~-~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 72 PVSM-LFQENNL-F-SHLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred cEEE-Eeccccc-c-cCCcHHHHHhccccc-ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 2333 4444322 2 124555554332111 111 111234467788888775 3567779999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+.+++.+.+++.+
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 164
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=3.8e-30 Score=223.55 Aligned_cols=169 Identities=16% Similarity=0.136 Sum_probs=126.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC---cc-ccCCCCCC---
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVKP--- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~---G~-~~~~~~~~--- 148 (255)
++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |+. |+ .++|....
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 5799999999998643 6799999999999999999999999999999999996 764 77 45653221
Q ss_pred ----------CCeeEEEecCCCCCcCccCCcccChHHHHHh--------cCCCCCCcHHHHHHHHHhhcCC--CCCCCCC
Q 025256 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS 208 (255)
Q Consensus 149 ----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~ 208 (255)
...+. ++++.... ..+++.++....... .+.........+.++++.+++. .+..+..
T Consensus 76 ~~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (262)
T PRK09984 76 RLARDIRKSRANTGY-IFQQFNLV--NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152 (262)
T ss_pred ccchhHHHHHhheEE-Eccccccc--cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 11333 45443321 235666655432110 0111111233467788888875 3567779
Q ss_pred CCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 209 lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 198 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
No 165
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.3e-30 Score=220.64 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=124.5
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~---- 147 (255)
|..++++||++.|++.. +++|+||+|++||+++|+||||||||||+++|+|+++.. .|++|+ .+++...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 1 MGKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred CCeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34689999999998643 679999999999999999999999999999999987410 026898 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
+...+. +.++.. ++. .++.++..+.....+... ........++++.+++. .+..+..||+||+
T Consensus 77 ~~~~~~~~~i~~-~~q~~~-~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 77 IDVNQLRKRVGM-VFQQPN-PFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred cchHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence 112333 444432 221 466666654433333211 11223455666666552 2556779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++++.+|+++|+||||++||+.+++.+.+++.+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 166
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.9e-30 Score=222.61 Aligned_cols=172 Identities=14% Similarity=0.080 Sum_probs=127.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~---- 147 (255)
.++++++||++.|++.. +++++||++.+|++++|+||||||||||+++|+|++... .|++|+ .+++...
T Consensus 18 ~~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 18 EIALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CeEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 45799999999997643 779999999999999999999999999999999998410 147998 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
....+. ++++... +. .++.++........+... ......+.++++.+++. .+..+..||+||+
T Consensus 94 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 94 INVYEMRKHIGM-VFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred CChHHHhcceEE-EecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 112333 5554332 22 366666655332223211 11223456677777663 3566779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|++||+||||++||+..++.+.+++.+.
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 209 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 167
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=2.6e-30 Score=221.45 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=113.6
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------CCCeeEEEecCCCCCcCccC
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQL 167 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~~d~~~~~~~~l 167 (255)
+|+++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....+. +..+...++ ..+
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~-~~~ 110 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGV-VFGQKTQLW-WDL 110 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEE-EcCCccccC-CCC
Confidence 7799999999999999999999999999999999997 99999 4555321 112233 332221111 225
Q ss_pred CcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHH
Q 025256 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (255)
Q Consensus 168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~ 245 (255)
++.++........+............+++.+++. .+.++..||+||+||+++|++++.+|+++|+||||++||+..++
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 6666555443333332222223456677777765 35667899999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 025256 246 DVSSMFDE 253 (255)
Q Consensus 246 ~l~~ll~~ 253 (255)
.+.++|.+
T Consensus 191 ~l~~~l~~ 198 (236)
T cd03267 191 NIRNFLKE 198 (236)
T ss_pred HHHHHHHH
Confidence 99999875
No 168
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=223.80 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=124.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~----- 147 (255)
.+++++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|++.. .+|++|+ .+++...
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 4799999999998643 77999999999999999999999999999999999741 1248898 4555321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCccccch
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qr 216 (255)
+...+. ++++.. ++. .++.++..+.....++.. .......++++.+++. .+.++..||+||+||
T Consensus 88 ~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 88 DPVEVRRRIGM-VFQQPN-PFP--KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred CHHHHhhceEE-EccCCc-cch--hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 112333 454432 222 255565544332222211 1123345667766552 355677999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 199 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHE 199 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 169
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.6e-30 Score=213.62 Aligned_cols=145 Identities=22% Similarity=0.306 Sum_probs=106.5
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++| . +.+
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G-------------~-i~~ 59 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSG-------------S-ILI 59 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCce-------------E-EEE
Confidence 46889999997643 6799999999999999999999999999999999984 4444 4 445
Q ss_pred CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~ 236 (255)
+|..+.. .+ ..........++ ++........++.+++.+. ||+||+||+++|++++.+|+++|+||||
T Consensus 60 ~g~~~~~--~~--~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 60 DGEDLTD--LE--DELPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCEEccc--cc--hhHHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 5543211 00 001111222232 3322222223555555443 9999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 025256 237 LFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~~ 254 (255)
++||+.++..+.+++.+.
T Consensus 129 ~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 129 SALDPITRREVRALLKSL 146 (178)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999998753
No 170
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=7.5e-30 Score=212.44 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=120.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----CCe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDV 151 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----~~~ 151 (255)
+++++|+++.|++.. +++ +||++++|++++|+||||||||||+++|+|++. |++|+ .+++.... ...
T Consensus 1 ~l~~~~l~~~~~~~~----l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECCcE----EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 478999999997522 335 999999999999999999999999999999997 99999 45553221 112
Q ss_pred eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
+. +.++.... ...++.++..+.....+ .......+++.+++. .+..+..||+||+||+++|++++.+|++
T Consensus 73 ~~-~~~~~~~~--~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 73 TY-IGHNLGLK--LEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred Ee-ccCCcCCC--ccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22 33332111 22466666654332211 234456677777765 3566779999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHh
Q 025256 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+||||++||+..++.+.+++.+
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVM 168 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999864
No 171
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.7e-30 Score=217.58 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=109.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
..+.++||++.|+.......+++++||++++|++++|+||||||||||+++|+|+++...|++|+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~--------------i 67 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD--------------I 67 (202)
T ss_pred ceEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE--------------E
Confidence 35789999999976422334779999999999999999999999999999999998411124444 3
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC----CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~~a~~l~~~~~il 230 (255)
.++|..+.. . ........++ +++.......++.+++.+. .+..+..||+||+||+++|++++.+|+++
T Consensus 68 ~i~g~~~~~-----~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~ll 140 (202)
T cd03233 68 HYNGIPYKE-----F--AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVL 140 (202)
T ss_pred EECCEECcc-----c--hhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 444432210 0 0001111121 2211111112333332221 45567799999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHh
Q 025256 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 ilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||||++||+..++.+.+++.+
T Consensus 141 llDEPt~~LD~~~~~~~~~~l~~ 163 (202)
T cd03233 141 CWDNSTRGLDSSTALEILKCIRT 163 (202)
T ss_pred EEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 172
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4e-30 Score=225.82 Aligned_cols=170 Identities=14% Similarity=0.162 Sum_probs=128.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC---cc-ccCCCCCC----
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVKP---- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~---G~-~~~~~~~~---- 148 (255)
+++++|+++.|++... .+++++||+|++|++++|+||||||||||+++|+|++. |++ |+ .+++....
T Consensus 5 ~l~i~~l~~~~~~~~~--~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 5 IVEFKHVSFTYPDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred eEEEEEEEEEcCCCCc--cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence 6999999999975211 26799999999999999999999999999999999997 887 77 45553221
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...|. ++++..... ...++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 80 ~~~~~~ig~-v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 80 WDIREKVGI-VFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHhheEE-EEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 12344 555532111 1256667665433333332211223466778888876 366778999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|++||+||||++||+..++.+.++|.+
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.2e-30 Score=218.45 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=125.8
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
|+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |+.|+ .+++... ...
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 46889999998643 6799999999999999999999999999999999997 99998 4655321 123
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. +.++..... .+++.++..+.....+............+++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 74 VNT-VFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred eEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 343 455433221 246656554433222221111233456778887876 356677999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+.+++.+.+++.+
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~ 175 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKR 175 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 174
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-30 Score=224.24 Aligned_cols=169 Identities=13% Similarity=0.163 Sum_probs=125.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
..+|+++||++.|++.. +++++||++.+|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 5 ~~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 5 VARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred ccEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence 35799999999998643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHH-hcCC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
....+. ++++..... ..++.++...... ..+. ........+.++++.+++. .+..+..||+||+||+++
T Consensus 78 ~~~~~i~~-v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 78 EVARRIGL-LAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred HHhhheEE-eeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHH
Confidence 112343 555543221 2344444332110 0000 0011223456778877775 467788999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++++.+|+++|+||||++||+.+++.+.++|.+
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
No 175
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.3e-30 Score=219.86 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=126.2
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++....|++|+ .+++...
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 578999999998643 679999999999999999999999999999999997311268998 4555321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC--CCcHHHHHHHHHhhcCC------CCCCCCCCCccccchhhh
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qrv~~ 219 (255)
+...+. ++++... +. .++.++..+.....+... ......+.++++.+++. .+..+..||+||+||+++
T Consensus 78 ~~~i~~-~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 78 RKNVGM-VFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred hhhEEE-EecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 112343 5555432 22 366666554322222211 11223456788888874 345677999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++++.+|+++|+||||++||+.++..+.++|.+
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 176
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=6.2e-30 Score=218.11 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=120.3
Q ss_pred cceEEEccceeecccccc-----ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCC
Q 025256 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~-----~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~ 149 (255)
+++++++||+|.|..... .+.|++||||+|++||++||+|.||||||||.|+|.|+++ |++
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~----------- 67 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTS----------- 67 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCC-----------
Confidence 568999999999975321 2568999999999999999999999999999999999995 444
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
|. |.++|..+.. +. .....+.+.++++.+++. ...++.+|||||+||+.+||||+.+
T Consensus 68 --G~-i~f~g~~i~~--~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 68 --GE-ILFEGKDITK--LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred --ce-EEEcCcchhh--cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 55 5666654321 11 112335678888888876 4688999999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++++|||++.||...+.++.+++...
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dl 155 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDL 155 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHH
Confidence 9999999999999999999999998653
No 177
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=4.8e-30 Score=242.38 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=127.8
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---- 148 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---- 148 (255)
++++++++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 8 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 8 APPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP 80 (510)
T ss_pred CCceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 346899999999998643 6799999999999999999999999999999999997 99999 45553211
Q ss_pred -----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
...+. +.++.... ..+++.++..+... ........+.++++.+++. .+.++..||+||+||+++|+
T Consensus 81 ~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 153 (510)
T PRK15439 81 AKAHQLGIYL-VPQEPLLF--PNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR 153 (510)
T ss_pred HHHHhCCEEE-EeccCccC--CCCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHH
Confidence 12344 55543321 22455554433110 1111234567788888885 35677899999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+.+|++||+||||++||+..++.+.++|.+
T Consensus 154 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 154 GLMRDSRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 178
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.8e-30 Score=223.95 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=127.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~---- 147 (255)
.++|++++|++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++.. .|++|+ .+++...
T Consensus 37 ~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 46799999999997643 679999999999999999999999999999999998410 147898 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (255)
....+. +.++... +. .++.++..+.....+.+. .....+.++++.+++. .+.++..||+||+|
T Consensus 113 ~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 113 VDPVALRRRIGM-VFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred cchHhhhccEEE-EecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 112333 5555432 22 255666554333333221 1233456777777763 35667899999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~ 226 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL 226 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 179
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.2e-30 Score=224.52 Aligned_cols=171 Identities=13% Similarity=0.144 Sum_probs=128.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
+++++||++.|++.. ...+++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence 799999999997421 2236799999999999999999999999999999999998 99999 4665322
Q ss_pred CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 ~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....|. +.++.. .+. ..++.++..+.....+.........+..+++.+++. .+..+..||+||+||+++|++++
T Consensus 80 ~~~i~~-v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 80 RRKIGM-VFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred hcceEE-EEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 122344 555532 122 246666665433222322111123456777777764 35567799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|++||+||||++||+.+++.+.++|.+.
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 180
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=218.99 Aligned_cols=172 Identities=12% Similarity=0.098 Sum_probs=124.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~----- 147 (255)
..++++|+++.|++.. +++|+||+|++|++++|+||||||||||+++|+|++. ...|++|+ .+++...
T Consensus 3 ~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 3 NKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred cEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 3689999999998643 7799999999999999999999999999999999973 00126898 4555321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (255)
+...+. ++++...+ ..+++.++........+.. .........+.++.+++. ....+..||+||+|
T Consensus 79 ~~~~~~~~i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGM-VFQKPNPF--PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEE-EecCCCCC--CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 112333 55543322 2246666654432222221 111123456677777763 23567799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 194 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 181
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=218.96 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=123.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccc-ccCCCCC--
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK-- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~~~~~-- 147 (255)
++++++||++.|++.. +++++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 5789999999998643 6799999999999999999999999999999999996 76 588 4554321
Q ss_pred --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcc
Q 025256 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (255)
+...+. ++++... +. .++.++..+.....+... ......+...++.+++. .+..+..||+|
T Consensus 76 ~~~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 151 (251)
T PRK14249 76 PNLDVVNLRKRVGM-VFQQPNP-FP--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151 (251)
T ss_pred cccChHHhhceEEE-EecCCcc-Cc--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence 112333 5555432 21 355666554332223221 11123344556655542 35667799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+++|++++.+|+++|+||||++||+..++.+.++|.+
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998865
No 182
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.4e-30 Score=211.55 Aligned_cols=140 Identities=21% Similarity=0.276 Sum_probs=105.3
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++. |++| . +.+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G-------------~-i~~ 59 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSG-------------E-IKV 59 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCe-------------E-EEE
Confidence 46789999997633 6799999999999999999999999999999999985 4554 4 445
Q ss_pred CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~ 236 (255)
+|..+.. .. ...+...++ +++.......++.+++. ||+||+||+++|++++.+|+++|+||||
T Consensus 60 ~g~~~~~--~~-----~~~~~~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 60 LGKDIKK--EP-----EEVKRRIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred CCEEccc--ch-----HhhhccEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 5543211 00 111222333 33322222234555543 9999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhh
Q 025256 237 LFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~~ 254 (255)
++||+..++.+.++|.+.
T Consensus 124 ~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 124 SGLDPESRREFWELLREL 141 (173)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999998753
No 183
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.96 E-value=5.2e-30 Score=217.19 Aligned_cols=170 Identities=18% Similarity=0.129 Sum_probs=126.3
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------- 148 (255)
++++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKELV 78 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHHH
Confidence 6889999999752111237799999999999999999999999999999999997 99999 46653221
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. ++.+... + ..+++.++..+...... .........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 79 ~~~~~i~~-~~q~~~~-~-~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 79 QLRRNIGY-IFQAHNL-L-GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHhheEE-EcCChhh-c-CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 12333 4444322 2 12566666554332221 11111223567888888876 356677999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|+++|+|||+++||+.+++.+.++|.+
T Consensus 156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 186 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQK 186 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 184
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=5.5e-30 Score=221.83 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=125.1
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 57899999998644 7799999999999999999999999999999999997 99999 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHH-h---cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~---~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. +.++.... ..+++.++...... . .+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 75 ~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 75 RRVAL-VEQDSDTA--VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred hheEE-ecccCccC--CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 12333 44443211 12466666544211 1 1111111233566778887775 356778999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998763
No 185
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-29 Score=219.38 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=125.3
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~----- 147 (255)
++++++|+++.|+... +++++||+|++|++++|+||||||||||+++|+|++. ...|++|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 4789999999997643 6799999999999999999999999999999999984 00137898 4555321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (255)
+...+. +.++... +. .++.++..+.....+... ......+..+++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~i~~-~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 79 DLVELRKEVGM-VFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred hHHHhhccEEE-EecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 112333 4444332 22 466666654333233221 11123445667776662 35567799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+.+++.+.+++.+.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 186
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.96 E-value=7.2e-30 Score=218.77 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=125.1
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
++++|+++.|++.. +++++||++.+|++++|+||||||||||+++|+|++. |++|+ .+++... ...
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 46889999998643 6799999999999999999999999999999999997 99999 4555321 112
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. ++.+... + ...+..++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~-~-~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 74 IGF-VFQHYAL-F-KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred EEE-EecChhh-c-cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 333 4444322 1 1246666655433222221112234456778887775 355667999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+|||+++||+.+++.+.++|.+
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~ 175 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRK 175 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 187
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.7e-30 Score=242.46 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=126.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+|+|+|++. |++|+ .+++....
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 5799999999998643 6799999999999999999999999999999999997 99999 45553211
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHH----hcCCC---CCCcHHHHHHHHHhhcCC--CCCCCCCCCccccch
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~----~~g~~---~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qr 216 (255)
...+. +.++.... ..+++.++...... ..+.. .......+.++++.+++. .+.++..||+||+||
T Consensus 77 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 77 AAQLGIGI-IYQELSVI--DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred HHHCCeEE-Eeeccccc--CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 12344 55543221 12455555433111 01110 001123456788888875 356678999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 188
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.1e-30 Score=208.77 Aligned_cols=140 Identities=18% Similarity=0.181 Sum_probs=106.0
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|+++ |++| . +.+
T Consensus 1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G-------------~-i~~ 61 (171)
T cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSG-------------E-ILI 61 (171)
T ss_pred CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCC-------------E-EEE
Confidence 46889999997641 126799999999999999999999999999999999995 4444 4 455
Q ss_pred CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~ 236 (255)
+|..+.. .+ ....+...++ +++..... .++.+++ ||+||+||+++|++++.+|+++|+||||
T Consensus 62 ~g~~~~~--~~----~~~~~~~i~~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 62 DGVDLRD--LD----LESLRKNIAYVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred CCEEhhh--cC----HHHHHhhEEEEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 5543211 01 1112223333 44332222 3566665 9999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 025256 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..++++.+++.+
T Consensus 125 ~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 125 SALDPETEALILEALRA 141 (171)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999999875
No 189
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=219.96 Aligned_cols=170 Identities=15% Similarity=0.140 Sum_probs=126.6
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~ 147 (255)
.+.+++++||++.|++.. +++++||++++|++++|+|+||||||||+|+|+|++. | ++|+ .+++...
T Consensus 4 ~~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i 76 (259)
T PRK14260 4 LIPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNI 76 (259)
T ss_pred ccceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEec
Confidence 356899999999998643 6799999999999999999999999999999999985 4 4798 4555321
Q ss_pred ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCC
Q 025256 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFD 210 (255)
Q Consensus 148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS 210 (255)
+...+. +.++... +. .++.++........+. ++........++++.+++. .+..+..||
T Consensus 77 ~~~~~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (259)
T PRK14260 77 YDPRININRLRRQIGM-VFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLS 152 (259)
T ss_pred cccccchHhhhhheEE-Eeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 112333 5555432 22 4666666543322221 2111223455677776652 356677999
Q ss_pred ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 153 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 196 (259)
T PRK14260 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL 196 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998763
No 190
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.96 E-value=6.2e-30 Score=209.12 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=106.0
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|+++ |++| . +.+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G-------------~-i~~ 61 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSG-------------R-VRL 61 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCC-------------e-EEE
Confidence 46889999997521 126799999999999999999999999999999999995 5544 4 455
Q ss_pred CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~ 236 (255)
+|..+.. .+ ....+...++ +++..... .++.+++ ||+||+||+++|++++.+|+++|+||||
T Consensus 62 ~g~~~~~--~~----~~~~~~~i~~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 62 DGADISQ--WD----PNELGDHVGYLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred CCEEccc--CC----HHHHHhheEEECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 5543221 11 1112223333 44332222 3566665 9999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 025256 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..++.+.+++.+
T Consensus 125 ~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 125 SHLDVEGERALNQAIAA 141 (173)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99999999999999865
No 191
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=218.70 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=121.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccc-ccCCCCC---
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK--- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~~~~~--- 147 (255)
+++++||++.|++.. +++++||+|++|++++|+||||||||||+|+|+|++. |+ +|+ .+++...
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 689999999998643 6799999999999999999999999999999999985 54 788 4555321
Q ss_pred -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcC------CCCCCCCCCCccc
Q 025256 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (255)
Q Consensus 148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l------~~~~~~~~lS~G~ 213 (255)
+...+. +.++.... ..+++.++........+... +.......+.++.+++ ..+..+..||+||
T Consensus 77 ~~~~~~~~~~i~~-~~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 77 RVDPVAMRRRVGM-VFQKPNPF--PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred ccCHHHhhceeEE-EeccCccC--cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 112333 55544322 22466666544332222211 1111223344444433 1356678999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 192
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=6.5e-30 Score=210.27 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=108.4
Q ss_pred EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecC
Q 025256 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (255)
Q Consensus 79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d 158 (255)
+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ | +.|. |.++
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~-------------~~G~-v~~~ 59 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---P-------------SSGE-ILLD 59 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---C-------------CCcE-EEEC
Confidence 4679999997633 6799999999999999999999999999999999984 4 4455 5566
Q ss_pred CCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeCC
Q 025256 159 GFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (255)
Q Consensus 159 ~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp 235 (255)
|..+.. .. ........++ ++ +++.+++.. +..+..||+||+||+++|++++.+|+++|+|||
T Consensus 60 g~~~~~--~~----~~~~~~~i~~~~q---------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 60 GKDLAS--LS----PKELARKIAYVPQ---------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred CEECCc--CC----HHHHHHHHhHHHH---------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 653321 11 1112222232 21 666666652 456779999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 025256 236 YLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 236 ~~~LD~~~~~~l~~ll~~ 253 (255)
|++||+.+++.+.+++.+
T Consensus 125 ~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 125 TSHLDIAHQIELLELLRR 142 (180)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999999999865
No 193
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=219.93 Aligned_cols=170 Identities=14% Similarity=0.113 Sum_probs=121.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~----- 147 (255)
++|+++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|++.. ..|++|+ .+++...
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 5799999999998643 67999999999999999999999999999999999741 0137898 4555321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCccccch
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qr 216 (255)
....+. +.++... +. .++.++..+.....+.. .........+++.+++. .+..+..||+||+||
T Consensus 85 ~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 85 DPVEVRRRIGM-VFQKPNP-FP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred ChHHHhhhEEE-EccCCcc-cc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence 112333 4444322 21 25555544322222211 11122334455555542 345677899999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 197 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL 197 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 194
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=220.13 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=123.1
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~---- 147 (255)
.++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|++... -|++|+ .+++...
T Consensus 19 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 19 EHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 35799999999998643 679999999999999999999999999999999986200 158898 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
....+. +.++... +. .++.++........+... ........+.++.+++. .+..+..||+||+
T Consensus 95 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 95 INVVNLRREIGM-VFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred ccHHHHhccEEE-EecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 112333 4544332 21 255555543322111111 11123345566666653 3466789999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|++||+||||++||+..++.+.+++.+.
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 210 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 195
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=221.92 Aligned_cols=170 Identities=15% Similarity=0.062 Sum_probs=121.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----C-CC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P-PD 150 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~-~~ 150 (255)
+++++||++.|++. +. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... . ..
T Consensus 6 ~l~~~~l~~~~~~~-~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HT--ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL 79 (272)
T ss_pred eEEEEeEEEEecCC-cE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence 58999999999631 12 6799999999999999999999999999999999997 99999 4665321 1 12
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHH-HhcCC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
.+. +.++............++..... ...+. +..........+++.+++. .+.++..||+||+||+++|++++
T Consensus 80 i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 80 VAY-VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred EEE-eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 333 44442211100012222221100 00111 1111223456677888775 45677899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+++|+||||++||+.+++.+.++|.+
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~ 187 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRE 187 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 196
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=244.86 Aligned_cols=175 Identities=16% Similarity=0.177 Sum_probs=132.3
Q ss_pred cceEEEccceeeccccc-------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC
Q 025256 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~-------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~ 146 (255)
.++++++||++.|+... ....+++++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence 36899999999996210 01237799999999999999999999999999999999997 99999 466532
Q ss_pred C-----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC---CCCCCCCCCc
Q 025256 147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (255)
Q Consensus 147 ~-----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~---~~~~~~~lS~ 211 (255)
. ....+. ++++.+......+++.++..+.....+.. .......+.++++.+++. .+.++.+|||
T Consensus 388 i~~~~~~~~~~~~~~i~~-v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSg 466 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQF-IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSG 466 (623)
T ss_pred CCcCCHHHHHHhcCCeEE-EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCH
Confidence 1 112444 66664311222356666665433222321 111224567888988884 4678889999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+++|++|+.+|++||+||||++||+..+.++.++|.+
T Consensus 467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999965
No 197
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.2e-30 Score=222.46 Aligned_cols=173 Identities=16% Similarity=0.220 Sum_probs=140.2
Q ss_pred cceEEEccceeecccccc--------------------ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc
Q 025256 75 IPVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI 134 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~--------------------~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~ 134 (255)
+..|+++||.|.||...+ .++.++|+||+|++|||..|+|-||||||||+|+|.+++.
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-- 79 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-- 79 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence 456899999999986421 2456789999999999999999999999999999999998
Q ss_pred CCCCcc-ccCCCCC------------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC
Q 025256 135 WPQKAS-SFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 201 (255)
Q Consensus 135 ~p~~G~-~~~~~~~------------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~ 201 (255)
|++|+ .+++... +.+..- +++. |-+. ++.++.+|..+.....|++.....+...++++.+++.
T Consensus 80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sM-VFQ~-FaLl-PhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~ 155 (386)
T COG4175 80 -PTRGEILVDGKDIAKLSAAELRELRRKKISM-VFQS-FALL-PHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155 (386)
T ss_pred -CCCceEEECCcchhcCCHHHHHHHHhhhhhh-hhhh-hccc-cchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence 99999 4665321 122232 3322 2221 2368888888888888888877788889999999886
Q ss_pred --CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 202 --~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+.++.+|||||+|||.+||||+.+|+||++||||+.|||--+.++.+-|-+
T Consensus 156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~ 209 (386)
T COG4175 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209 (386)
T ss_pred hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999998888876644
No 198
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=220.71 Aligned_cols=175 Identities=16% Similarity=0.112 Sum_probs=124.0
Q ss_pred ccCccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC
Q 025256 71 QQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK 147 (255)
Q Consensus 71 ~~~~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~ 147 (255)
+|...++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|++... .|++|+ .+++...
T Consensus 14 ~~~~~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 14 INPDHSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred cCCCCceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 344567899999999998643 679999999999999999999999999999999998410 125888 4555321
Q ss_pred ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCc
Q 025256 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (255)
Q Consensus 148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~ 211 (255)
....+. ++++... +. .++.++........+... .......+.++.+++. .+.++..||+
T Consensus 90 ~~~~~~~~~~~~~i~~-v~q~~~l-~~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 164 (274)
T PRK14265 90 YDSQINSVKLRRQVGM-VFQRPNP-FP--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSG 164 (274)
T ss_pred ccccchhHHHhhcEEE-EccCCcc-cc--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCH
Confidence 112333 4444332 21 245555443222111111 1122334455555542 3456778999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 207 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL 207 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999763
No 199
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.1e-29 Score=214.28 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=118.4
Q ss_pred cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------------
Q 025256 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------------ 148 (255)
Q Consensus 82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------------ 148 (255)
+|+|.|++.. + |+||++++ ++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 5 ~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 5 DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhHh
Confidence 8999998843 3 99999999 9999999999999999999999997 99999 45553211
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...+. ++++... + ..+++.++........ ........+.++++.+++.. +..+..||+||+||+++|++++.+
T Consensus 75 ~~i~~-~~q~~~~-~-~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 75 RKIGL-VFQQYAL-F-PHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred hcEEE-EecCCcc-C-CCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 12333 4444322 1 1245555554332111 11112335677888888763 567789999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|+||||++||+.+++.+.+++.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQ 176 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 200
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=8e-30 Score=204.51 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=121.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCC
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD 150 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~ 150 (255)
++.++++|+.|+||... +|++||++.++|+++.|+|.|||||||+||||.-+.+ |+.|. ..+++.. +..
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 45799999999999876 7899999999999999999999999999999999987 99998 3554321 122
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhh--------------------------cCC--
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNL--------------------------RNQ-- 201 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l--------------------------~l~-- 201 (255)
.|..+..|. ..+...+.+.++ ++.|++...+++++|+ ++.
T Consensus 77 ~G~l~~ad~-----------~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek 145 (256)
T COG4598 77 DGQLKPADK-----------RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK 145 (256)
T ss_pred CCCeeeCCH-----------HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh
Confidence 222221111 112223334444 5555555555555554 443
Q ss_pred CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 202 ~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+.|+..|||||+||++|||||+.+|+++++||||+.|||+-.-++...+..
T Consensus 146 ~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~ 197 (256)
T COG4598 146 ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD 197 (256)
T ss_pred hhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999999998888888764
No 201
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=228.95 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=122.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
||++ ||+|.|++.. .++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 1 ~l~~-~l~k~~~~~~------~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC------LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE------EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4777 9999998632 38999999999999999999999999999999998 99999 4555321
Q ss_pred ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
....+. +.++.. ++ +.+++.++..+... ......+.++++.+++. .+.++..||+||+||+++|+
T Consensus 71 ~~~~~~~i~~-v~q~~~-l~-~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar 141 (352)
T PRK11144 71 LPPEKRRIGY-VFQDAR-LF-PHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR 141 (352)
T ss_pred cchhhCCEEE-EcCCcc-cC-CCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 112343 454433 22 23566666544211 12234567888888886 36677899999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+.+|++||+||||++||+..++.++++|.+
T Consensus 142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 142 ALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 202
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=5.3e-30 Score=211.18 Aligned_cols=143 Identities=21% Similarity=0.236 Sum_probs=105.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++++++|+++.| +++++||++++|++++|+||||||||||+++|+|+++ |++|+ +
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~--------------i 57 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGE--------------I 57 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCce--------------E
Confidence 469999999998 4699999999999999999999999999999999995 55554 4
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCC-CCCC---cHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~---~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
.++|..+.. .......+...++ +++. ......++.+++.+... ||+||+||+++|++++.+|+++|
T Consensus 58 ~~~g~~~~~-----~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~lll 127 (182)
T cd03215 58 TLDGKPVTR-----RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLI 127 (182)
T ss_pred EECCEECCc-----cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEE
Confidence 444432211 0000111122232 3321 11222345555543321 99999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|||+++||+.+++.+.+++.+
T Consensus 128 lDEP~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 128 LDEPTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred ECCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 203
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=218.19 Aligned_cols=172 Identities=13% Similarity=0.090 Sum_probs=124.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~---- 147 (255)
.++|+++|+++.|++.. +|+|+||++++|++++|+||||||||||+++|+|++.. .++++|+ .+++...
T Consensus 4 ~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred cceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 46899999999998643 77999999999999999999999999999999998741 0124898 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
....+. ++++... +. .++.++..+.....+... ........++++.+++. .+..+..||+||+
T Consensus 80 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 80 ADVVALRRKIGM-VFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred cchhhhhceEEE-EecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 111333 4444332 22 366666654433323211 11122345666666552 3466779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~ 195 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 204
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-29 Score=217.04 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=125.1
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~ 150 (255)
|+++++++.|++ . +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... ...
T Consensus 1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 467899999975 2 5799999999999999999999999999999999997 99999 4555321 113
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
.+. +.++.... ..+++.++........+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 73 i~~-~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 73 ISY-VPQNYALF--PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred EEE-EeecCccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 343 45443322 2256666665433232221111223456778888776 356677999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||||++||+.+++.+.+++.+
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~ 174 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKK 174 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 205
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=6.4e-30 Score=209.93 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=107.9
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++.... +++++||++++|++++|+||||||||||+++|+|++. |++ |. +.+
T Consensus 1 i~~~~~~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~-------------G~-i~~ 61 (178)
T cd03247 1 LSINNVSFSYPEQEQQ--VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQ-------------GE-ITL 61 (178)
T ss_pred CEEEEEEEEeCCCCcc--ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCC-------------CE-EEE
Confidence 4688999999763112 6799999999999999999999999999999999984 444 44 455
Q ss_pred CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~ 236 (255)
+|..+.. . ....+...++ ++...... .++.+++ +..||+||+||+++|++++.+|+++|+||||
T Consensus 62 ~g~~~~~-----~--~~~~~~~i~~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 62 DGVPVSD-----L--EKALSSLISVLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred CCEEHHH-----H--HHHHHhhEEEEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 5542210 0 1112223333 44332222 3555555 6789999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 025256 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..++.+.+++.+
T Consensus 127 ~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 127 VGLDPITERQLLSLIFE 143 (178)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999999875
No 206
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=6.8e-30 Score=207.04 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=99.9
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++.. +++++||++++||+++|+||||||||||+++|+|++. +..|. +.+
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----------------~~~G~-v~~ 59 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK----------------PDSGE-ILV 59 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC----------------CCCeE-EEE
Confidence 46889999998643 6799999999999999999999999999999999984 44455 556
Q ss_pred CCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCC
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~ 237 (255)
++..+.. .+ .........++ .++||+||+||+++|++++.+|+++|+||||+
T Consensus 60 ~g~~~~~--~~---~~~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 60 DGKEVSF--AS---PRDARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred CCEECCc--CC---HHHHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 6653221 00 00111111222 11299999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 025256 238 FLDGGVWKDVSSMFDE 253 (255)
Q Consensus 238 ~LD~~~~~~l~~ll~~ 253 (255)
+||+.+++.+.+++.+
T Consensus 112 ~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 112 ALTPAEVERLFKVIRR 127 (163)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999875
No 207
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.96 E-value=1.6e-29 Score=239.83 Aligned_cols=174 Identities=16% Similarity=0.192 Sum_probs=126.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCCC-
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVKP- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~~- 148 (255)
++++++|+++.|++......+++++||++++||+++|+||||||||||+|+|+|+++ | ++|+ .+++....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence 579999999999631111127799999999999999999999999999999999996 4 7898 45553210
Q ss_pred -----------CCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCCC-----CCCCCCCCc
Q 025256 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH 211 (255)
Q Consensus 149 -----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~ 211 (255)
...|. ++++........+++.++....... .+.........+.++++.+++.. +.++..|||
T Consensus 81 ~~~~~~~~~~~~~ig~-v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 81 ASEQTLRGVRGNKIAM-IFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred CCHHHHHHHhcCceEE-EecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 12444 5665421111113443433322111 13322222345678888888853 567889999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+++|++|+.+|++||+||||++||+..++.+.+++.+
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 208
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.2e-29 Score=216.50 Aligned_cols=170 Identities=18% Similarity=0.139 Sum_probs=123.1
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCcc-ccCCCCC----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK---- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p---~~G~-~~~~~~~---- 147 (255)
++++++||++.|+... +++++||++.+|++++|+||||||||||+++|+|++.. -| ++|+ .+++...
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence 4799999999998633 67999999999999999999999999999999998620 03 4898 4555321
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
....+. +.++... +. .++.++..+.....+.... .......+.++.+++. .+..+..||+||+
T Consensus 79 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 79 EDVVQLRKQVGM-VFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred ccHHHhcCeEEE-EECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence 112333 4554332 22 3666666543332332111 1122345556666542 3456779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 209
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3e-29 Score=217.91 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=123.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~~~~~- 147 (255)
.++++++|+++.|++.. +|+++||++++|++++|+|+||||||||+++|+|+++ |+ +|+ .+++...
T Consensus 5 ~~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred cceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhh
Confidence 45799999999997643 6799999999999999999999999999999999996 64 676 3444221
Q ss_pred ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCCc
Q 025256 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (255)
Q Consensus 148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~ 211 (255)
+...+. ++++.. ++. .++.++........+. +.........++++.+++. .+..+..||+
T Consensus 78 ~~~~~~~~~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSM-VHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 111222 444332 221 4566655443222222 1111123456677777663 2456679999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+++|++++.+|+++|+||||++||+.+++.+.++|.+
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~ 195 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998875
No 210
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.96 E-value=1.6e-29 Score=239.41 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=125.4
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCccc-cC-----------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASS-FD----------- 143 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~~-~~----------- 143 (255)
|+++|+++.|++.. +++++||++++|++++|+||||||||||+|+|+|++ . |++|++ ++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 47899999997643 679999999999999999999999999999999996 5 899983 43
Q ss_pred ------------CCCC------------------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHH
Q 025256 144 ------------SQVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN 193 (255)
Q Consensus 144 ------------~~~~------------------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~ 193 (255)
+... +...+. ++++...++ ..+++.++..+.....+.........+.+
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAI-MLQRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEE-EeccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1000 011333 455422221 12466666655433334322222345677
Q ss_pred HHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 194 CLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 194 ~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+++.. +.++..|||||+||+++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 888888853 567789999999999999999999999999999999999999999988865
No 211
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.6e-29 Score=219.48 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=122.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~----- 147 (255)
++++++|+++.|++.. +++++||+|++|++++|+|+||||||||+++|+|+++ ..+|++|+ .+++...
T Consensus 23 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 23 VVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred eEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 4799999999998643 6799999999999999999999999999999999984 12258898 4555321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcC------CCCCCCCCCCccccc
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l------~~~~~~~~lS~G~~q 215 (255)
....+. ++++... +. .++.++..+.....+.... .....+.+.++.+++ ..+..+..||+||+|
T Consensus 99 ~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 99 SVEELRTNVGM-VFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred cHHHHhhhEEE-EecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 112333 5555432 22 3566665543222222111 011223444544432 135567799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 213 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 212
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=218.04 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=126.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC------CCC
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS------QVK 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~------~~~ 147 (255)
.+++++++++++|++.. +++++||++.+|++++|+||||||||||+++|+|++. |++|+ .++| ...
T Consensus 8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 46799999999998754 7799999999999999999999999999999999997 89876 2333 111
Q ss_pred --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCcc
Q 025256 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (255)
....+. +.++.... ..+++.++..+.....+.. .......+.++++.+++. .+..+..||+|
T Consensus 81 ~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 81 FQIDAIKLRKEVGM-VFQQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred ccCCHHHHhcceEE-EccCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 112333 45444322 2246666665433222221 111123456777777764 24567789999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|+++|+||||++||..+++.+.++|.+.
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL 199 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999753
No 213
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=239.48 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=127.6
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 3 PYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA 75 (501)
T ss_pred ceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence 5799999999998643 6799999999999999999999999999999999997 99999 4555321
Q ss_pred --CCCeeEEEecCCCCCcCccCCcccChHHHHH--hcCC-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~--~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a 220 (255)
....+. +.++... + ..+++.++..+... ..+. ........+.++++.+++. .+.++..|||||+||+++|
T Consensus 76 ~~~~~i~~-v~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 76 ALAAGVAI-IYQELHL-V-PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHhCCEEE-EEechhc-c-CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 122444 5554322 1 22566665543211 1111 1111123567788888875 3566779999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++++.+|++||+||||++||+..++.+.++|.+
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 214
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.1e-29 Score=218.32 Aligned_cols=173 Identities=15% Similarity=0.092 Sum_probs=124.9
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC---
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK--- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~--- 147 (255)
..++++++|+++.|++.. +++++||+|++|++++|+||||||||||+++|+|++.. ..|++|+ .+++...
T Consensus 22 ~~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~ 97 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97 (272)
T ss_pred CCcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence 356899999999997643 67999999999999999999999999999999999840 0137898 4555321
Q ss_pred -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCccc
Q 025256 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (255)
Q Consensus 148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (255)
+...+. +.++.. ++. .++.++........+... ........++++.+++. .+..+..||+||
T Consensus 98 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 98 KVDVAELRRRVGM-VFQRPN-PFP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred ccCHHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence 112333 444432 222 255565544322222211 11123355667766653 245677999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++++.+|+++|+||||++||+.++..+.++|.+.
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~ 214 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL 214 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 215
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-29 Score=221.22 Aligned_cols=167 Identities=16% Similarity=0.099 Sum_probs=123.4
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--------Ccc-ccCCCCC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KAS-SFDSQVK 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~--------~G~-~~~~~~~ 147 (255)
||+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+ .+++...
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 488999999998644 6799999999999999999999999999999999997 77 788 4555321
Q ss_pred C--------CCeeEEEecCCCCCcCccCCcccChHHHHHhc----CCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccc
Q 025256 148 P--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 213 (255)
Q Consensus 148 ~--------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~----g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~ 213 (255)
. ...+ +++++....+ .+++.++..+..... +...........++++.+++. .+..+..||+||
T Consensus 74 ~~~~~~~~~~~~~-~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 74 AAIDAPRLARLRA-VLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred ccCCHHHHHhhcE-EecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 1 1123 3555433222 145555543321100 111111223456778888776 356678999999
Q ss_pred cchhhhhhhhc---------cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~---------~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++ .+|++||+||||++||+..++.+.+++.+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999 59999999999999999999999999875
No 216
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.8e-29 Score=220.83 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=125.7
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC---
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK--- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~--- 147 (255)
..++++++||++.|++.. +++|+||+|++|++++|+||||||||||+++|+|+.. ..+|++|+ .+++...
T Consensus 36 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 356899999999997643 6799999999999999999999999999999999852 11148998 4555321
Q ss_pred -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCccc
Q 025256 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (255)
Q Consensus 148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (255)
+...+. +.++... +. .++.++..+.....+... ......+.++++.+++. .+..+..||+||
T Consensus 112 ~~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 112 FTDEVLLRKKIGM-VFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred ccchHHhhhcEEE-ECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 112333 4554432 22 266666655333223211 11123345666666652 356678999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 227 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE 227 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 217
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.96 E-value=2.2e-29 Score=227.69 Aligned_cols=159 Identities=10% Similarity=0.101 Sum_probs=121.5
Q ss_pred cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------------C
Q 025256 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------P 148 (255)
Q Consensus 82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------------~ 148 (255)
||+|.|++.. + ++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... +
T Consensus 4 ~l~~~~~~~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCEE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 7899997632 3 8999999999999999999999999999999998 99999 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...+. +.++.. ++ ..+++.++..+..... ........+.++++.+++. .+.++..||+||+||+++|++|+.+
T Consensus 75 ~~i~~-v~q~~~-l~-~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 75 RRIGY-VFQEAR-LF-PHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred CCeEE-EecCCc-cC-CCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 12343 555432 22 2367777765433211 1111233467888888886 3667789999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|++||+||||++||+..++.+.++|.+.
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l 177 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERL 177 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753
No 218
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=3.4e-29 Score=235.52 Aligned_cols=163 Identities=10% Similarity=-0.028 Sum_probs=120.5
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~------ 148 (255)
.+|+++|+++.|++.. +|+++||++++|++++|+||||||||||+|+|+|++. |++|++ +++....
T Consensus 2 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 2 SSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ 74 (490)
T ss_pred ceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence 4799999999998643 6799999999999999999999999999999999997 999984 4442211
Q ss_pred --CCeeEEEecCCCC-CcCc-----cCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhh
Q 025256 149 --PDVATVLPMDGFH-LYLS-----QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 149 --~~~g~~i~~d~~~-~~~~-----~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ 218 (255)
...+. +.++... .... .+++.++ .... ......+.++++.+++. .+.++..||+||+||++
T Consensus 75 ~~~~i~~-~~q~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 75 LQKLVSD-EWQRNNTDMLSPGEDDTGRTTAEI-------IQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL 145 (490)
T ss_pred HHHHhce-eccCcchhhcccchhhccccHHHh-------cccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence 11232 3332110 0000 0111111 1001 11234567788888875 36778899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998763
No 219
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=3.1e-29 Score=232.29 Aligned_cols=179 Identities=16% Similarity=0.192 Sum_probs=138.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCcc-ccCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVK------ 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~~~~~------ 147 (255)
++++++||++.|......+.+++||||++.+||++||+|.|||||||+++.|.|++... ...+|+ .+++...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 48999999999986544556889999999999999999999999999999999999521 112577 4666321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CCCCCcHHHHHHHHHhhcCCC----CCCCCCCCccccchh
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv 217 (255)
+.....+++++.+...++.+++.+.+.......+ ...+.......++++.+++.. +.++++|||||+||+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 2334445888887666554555444444333332 233445566788999998862 348889999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|+||+.+|++||+||||.+||+..+.+|.++|...
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l 200 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL 200 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999764
No 220
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=2.3e-29 Score=204.50 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=103.3
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEEe
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLP 156 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i~ 156 (255)
++++++++.|++. +. +++++||++++|++++|+||||||||||+++|+|+++ |++|++ +++. ...+. +.
T Consensus 1 i~~~~~~~~~~~~-~~--~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~-~~ 70 (166)
T cd03223 1 IELENLSLATPDG-RV--LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLF-LP 70 (166)
T ss_pred CEEEEEEEEcCCC-Ce--eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEE-EC
Confidence 4678999999642 12 6799999999999999999999999999999999996 777763 3321 12222 33
Q ss_pred cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~ 236 (255)
++... + .. ++.+++.+. ....||+||+||+++|++++.+|+++|+||||
T Consensus 71 q~~~~-~--~~-------------------------tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYL-P--LG-------------------------TLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCcc-c--cc-------------------------cHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 32211 0 01 222332221 45789999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 025256 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..++.+.+++.+
T Consensus 120 ~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 120 SALDEESEDRLYQLLKE 136 (166)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99999999999998875
No 221
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-29 Score=219.19 Aligned_cols=169 Identities=12% Similarity=0.088 Sum_probs=122.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~- 147 (255)
.++++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ | ++|+ .+++...
T Consensus 19 ~~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 19 APAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred CcEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEcc
Confidence 35799999999998643 6799999999999999999999999999999999986 5 5888 4555321
Q ss_pred --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCCcc
Q 025256 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (255)
Q Consensus 148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (255)
+...+. ++++.. ++. .++.++.......... ..........+.++.+++. .+..+..||+|
T Consensus 92 ~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGM-LFQRPN-PFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEE-eccCCc-cCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence 112333 444432 221 3555555432211111 1111112235566777664 23556799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 209 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988753
No 222
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1e-29 Score=211.18 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=104.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
..++++|+++.|++......+++++||++++|++++|+||||||||||+++|+|+.. ..|++| . +
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G-------------~-i 66 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITG-------------E-I 66 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcce-------------E-E
Confidence 368899999999752111126799999999999999999999999999999999852 003444 4 3
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE 234 (255)
.+++..+. .......++ ++........++.+++.+.... ..||+||+||+++|++++.+|+++|+||
T Consensus 67 ~~~g~~~~----------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~LSgGe~qrv~la~al~~~p~vlllDE 134 (192)
T cd03232 67 LINGRPLD----------KNFQRSTGYVEQQDVHSPNLTVREALRFSALL--RGLSVEQRKRLTIGVELAAKPSILFLDE 134 (192)
T ss_pred EECCEehH----------HHhhhceEEecccCccccCCcHHHHHHHHHHH--hcCCHHHhHHHHHHHHHhcCCcEEEEeC
Confidence 44443211 011112222 2222111112333333221111 1899999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHh
Q 025256 235 NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~ 253 (255)
|+++||+.+++.+.+++.+
T Consensus 135 P~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 135 PTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999875
No 223
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=8.1e-29 Score=213.88 Aligned_cols=170 Identities=17% Similarity=0.132 Sum_probs=119.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCcc-ccCCCCCC----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVKP---- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~~~~~~---- 148 (255)
+++++++|++.|++.. +|+++||++++|++++|+||||||||||+++|+|+ ++ |++|+ .+++....
T Consensus 6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence 4799999999998643 77999999999999999999999999999999997 44 89998 45553211
Q ss_pred ---CCeeE-EEecCCCCCcCccCCcccChHHHHHhc----CCCCCC---cHHHHHHHHHhhcCC---CCCCCC-CCCccc
Q 025256 149 ---PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTF---NPLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (255)
Q Consensus 149 ---~~~g~-~i~~d~~~~~~~~l~~~e~~~~~~~~~----g~~~~~---~~~~~~~~l~~l~l~---~~~~~~-~lS~G~ 213 (255)
...+. ++.++... + ..++..++........ +..... ....+.++++.+++. .+..+. .||+||
T Consensus 79 ~~~~~~~~~~~~q~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 79 EERAHLGIFLAFQYPIE-I-PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred hhhheeeEEEEeccccc-c-ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 11121 23333221 1 1133333332211110 011000 113346677887775 244555 499999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL 197 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 224
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=1.7e-29 Score=213.85 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=116.5
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 68899999997521 126799999999999999999999999999999999997 99999 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--C-----------CCCCCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-----------VYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~-----------~~~~~lS~G~~q 215 (255)
...+. +.++... +. .++.++... ... ......+.++++.+++.. + ..+..||+||+|
T Consensus 78 ~~i~~-~~q~~~~-~~--~tv~e~l~~-----~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 78 RNIGY-VPQDVTL-FY--GTLRDNITL-----GAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred hhEEE-eCCCCcc-cc--chHHHHhhc-----CCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 12333 4444322 11 233332211 111 112334445555555431 1 134589999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 186 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL 186 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998763
No 225
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=4.2e-29 Score=207.92 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=104.0
Q ss_pred eEEEccceeeccccc--cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCccccCCCCCCCCee
Q 025256 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPPDVA 152 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~--~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~~~~~~~~~~~~g 152 (255)
.+++++|++.|++.. ....+++++||++++|++++|+||||||||||+++|+|++ + |++|+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~------------ 67 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGE------------ 67 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceE------------
Confidence 478999999997520 0112779999999999999999999999999999999998 6 77776
Q ss_pred EEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++|..+.. ...+...++ ++........++.+++.+.... ..||+||+||+++|++++.+|+++|
T Consensus 68 --i~~~g~~~~~---------~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~~LS~G~~qrv~laral~~~p~ill 134 (194)
T cd03213 68 --VLINGRPLDK---------RSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--RGLSGGERKRVSIALELVSNPSLLF 134 (194)
T ss_pred --EEECCEeCch---------HhhhheEEEccCcccCCCCCcHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2233321110 000111111 1111111111222222211111 1899999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHhh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||||++||+..++.+.++|.+.
T Consensus 135 lDEP~~~LD~~~~~~l~~~l~~~ 157 (194)
T cd03213 135 LDEPTSGLDSSSALQVMSLLRRL 157 (194)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 226
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.5e-29 Score=215.48 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=124.1
Q ss_pred cCccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCC
Q 025256 72 QREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQ 145 (255)
Q Consensus 72 ~~~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~ 145 (255)
+....+|+++|+++.|++.. +++++||+|++|++++|+|+||||||||+++|+|++. | ++|+ .+++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~ 83 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPD 83 (265)
T ss_pred cCCCceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCc
Confidence 33456799999999998643 7799999999999999999999999999999999985 4 6888 45542
Q ss_pred CC------------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCC
Q 025256 146 VK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYA 206 (255)
Q Consensus 146 ~~------------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~ 206 (255)
.. ....+. +.++... +. .++.++........+... ..........++.+++. .+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 159 (265)
T PRK14252 84 NVNILSPEVDPIEVRMRISM-VFQKPNP-FP--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLA 159 (265)
T ss_pred cccccccccCHHHHhccEEE-EccCCcC-Cc--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc
Confidence 11 112233 4444332 21 255555544322223211 11123445666666542 24567
Q ss_pred CCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 207 ~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
..||+||+||+++|++++.+|+++|+||||++||+.+++.+.++|.+
T Consensus 160 ~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 206 (265)
T PRK14252 160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206 (265)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999875
No 227
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.96 E-value=3.2e-29 Score=237.70 Aligned_cols=173 Identities=15% Similarity=0.203 Sum_probs=128.7
Q ss_pred ceEEEccceeeccccc-------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC
Q 025256 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~-------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~ 147 (255)
++++++|+++.|+... ....+|+++||+|++|++++|+||||||||||+|+|+|++ |++|+ .+++...
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEc
Confidence 5799999999996210 0112679999999999999999999999999999999998 78999 4655321
Q ss_pred -----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC--CCCCCcHHHHHHHHHhhcCC---CCCCCCCCCc
Q 025256 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (255)
Q Consensus 148 -----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g--~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~ 211 (255)
+...+. ++++........+++.++..+.....+ .........+.++++.+++. .+.++..|||
T Consensus 350 ~~~~~~~~~~~~~~i~~-v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQV-VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG 428 (529)
T ss_pred cccchhhHHHhhhceEE-EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence 112344 565532111123577776655322221 11111234567888888885 3667889999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999975
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.96 E-value=4.7e-29 Score=236.15 Aligned_cols=172 Identities=17% Similarity=0.216 Sum_probs=127.6
Q ss_pred cceEEEccceeecccc-ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccC-CCC----C
Q 025256 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQV----K 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~-~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~-~~~----~ 147 (255)
.++++++||++.|++. .....+++++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .++ +.. .
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 3579999999999531 011126799999999999999999999999999999999997 99999 453 321 0
Q ss_pred ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-------CCCCCCCC
Q 025256 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFD 210 (255)
Q Consensus 148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------~~~~~~lS 210 (255)
+...+. +.++... + ..+++.++...... .+.+.......+.++++.+++.. +.++..||
T Consensus 354 ~~~~~~~~~~~~~i~~-v~q~~~l-~-~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGI-LHQEYDL-Y-PHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred ccchhhHHHHhhhEEE-EccCccc-C-CCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 112344 5554322 2 23566666654221 12221112234567888888853 56778999
Q ss_pred ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+||+++|++|+.+|++||+||||++||+..++++.++|.+
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~ 472 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999864
No 229
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.96 E-value=3.8e-29 Score=213.31 Aligned_cols=154 Identities=17% Similarity=0.146 Sum_probs=113.9
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCcc-ccCCCCCC------CCeeEEEecCCCCCcC
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVKP------PDVATVLPMDGFHLYL 164 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p----~~G~-~~~~~~~~------~~~g~~i~~d~~~~~~ 164 (255)
+++++||++++|++++|+||||||||||+++|+|+++ | ++|+ .+++.... ...+. +.++......
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~-~~q~~~~~~~ 76 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIAT-IMQNPRTAFN 76 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEE-EecCchhhcC
Confidence 4699999999999999999999999999999999997 7 8999 45553211 12333 5555421122
Q ss_pred ccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-----CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCC
Q 025256 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (255)
Q Consensus 165 ~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~L 239 (255)
..+++.++........+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+++|+||||++|
T Consensus 77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 2244444443332223322222234467888888875 35667799999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 025256 240 DGGVWKDVSSMFDE 253 (255)
Q Consensus 240 D~~~~~~l~~ll~~ 253 (255)
|+..++.+.+++.+
T Consensus 157 D~~~~~~l~~~l~~ 170 (230)
T TIGR02770 157 DVVNQARVLKLLRE 170 (230)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998875
No 230
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=3.6e-29 Score=235.92 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=124.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCcc-ccCCCCC------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK------ 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~~~~~------ 147 (255)
+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ | ++|+ .+++...
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 478999999998643 6799999999999999999999999999999999985 5 7899 4555321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhc--C--CCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchh
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~--g--~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv 217 (255)
+...+. ++++.... ..+++.++..+..... + .........+.++++.+++.. +..+..||+||+||+
T Consensus 74 ~~~~~~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 74 DTERAGIVI-IHQELTLV--PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHHhCCEEE-EeeccccC--CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 122444 55543221 2256666554322111 0 111111234577888888763 345779999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 231
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=9.4e-29 Score=235.78 Aligned_cols=166 Identities=16% Similarity=0.078 Sum_probs=126.2
Q ss_pred cceEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCee
Q 025256 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVA 152 (255)
Q Consensus 75 ~~~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g 152 (255)
+++|+++||++.|+ +.. +|+++||+|++|++++|+||||||||||+++|+|++. |++|++ ++.. ...|
T Consensus 4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~~i~ 73 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---IKVG 73 (556)
T ss_pred cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE
Confidence 35899999999998 533 6799999999999999999999999999999999997 999994 4431 2345
Q ss_pred EEEecCCCCCcCccCCcccChHHHHHh--------------cCCCCC---------------------C-cHHHHHHHHH
Q 025256 153 TVLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT---------------------F-NPLLLLNCLK 196 (255)
Q Consensus 153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~--------------~g~~~~---------------------~-~~~~~~~~l~ 196 (255)
. ++++.... ..+++.++..+.... ...... + ....+.++++
T Consensus 74 ~-v~Q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 150 (556)
T PRK11819 74 Y-LPQEPQLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMD 150 (556)
T ss_pred E-EecCCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 4 56654322 235676666542110 011100 0 1234566777
Q ss_pred hhcCC-CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 197 ~l~l~-~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+++. .+..+..|||||+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 151 ~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 151 ALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence 77774 3567789999999999999999999999999999999999999999998875
No 232
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.96 E-value=1.3e-28 Score=212.11 Aligned_cols=167 Identities=16% Similarity=0.082 Sum_probs=115.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCcc-ccCCCCCC-----
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~~~~~~----- 148 (255)
+++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|++ + |++|+ .+++....
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 478999999998643 679999999999999999999999999999999994 5 89998 45553211
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhc-CC-C-CCCc----HHHHHHHHHhhcCC---CCCCCC-CCCccc
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-P-WTFN----PLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~-~-~~~~----~~~~~~~l~~l~l~---~~~~~~-~lS~G~ 213 (255)
...+. +.++..... .++............ .. . ...+ ...+.+.++.+++. ....+. .||+||
T Consensus 74 ~~~~~~i~~-~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 74 DRAGEGIFM-AFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred HHhhcceEE-EecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence 11222 333332111 011111111110000 00 0 0011 12345666766663 233343 799999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 190 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNS 190 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 233
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.96 E-value=1.9e-29 Score=214.41 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=119.8
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
..++++++++++.|++.. ...+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 8 ~~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEH 83 (226)
T ss_pred cCceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCH
Confidence 456799999999997521 1126799999999999999999999999999999999997 99998 4555321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH--H-----HHHHHHHhh--cCC--CCCCCCCCCccc
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP--L-----LLLNCLKNL--RNQ--GSVYAPSFDHGV 213 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~--~-----~~~~~l~~l--~l~--~~~~~~~lS~G~ 213 (255)
....+. +.++... +. .++.++..+... ...... . ...++++.+ ++. .+.++..||+||
T Consensus 84 ~~~~~~i~~-~~q~~~l-~~--~tv~~nl~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~ 155 (226)
T cd03248 84 KYLHSKVSL-VGQEPVL-FA--RSLQDNIAYGLQ----SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ 155 (226)
T ss_pred HHHHhhEEE-EecccHH-Hh--hhHHHHhccccC----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence 112333 4444321 11 233333321100 000000 0 123455555 333 355677999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 234
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=3.2e-29 Score=209.52 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=103.8
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+.. ..|++| . +.+
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~p~~G-------------~-i~~ 61 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEG-------------E-ILF 61 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCcc-------------E-EEE
Confidence 46889999998643 7799999999999999999999999999999999941 015555 4 444
Q ss_pred CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~ 236 (255)
+|..+.. .. .....+...++ ++........++.+++ ......||+||+||+++|++++.+|+++|+||||
T Consensus 62 ~g~~~~~--~~---~~~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 132 (200)
T cd03217 62 KGEDITD--LP---PEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD 132 (200)
T ss_pred CCEECCc--CC---HHHHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5443211 00 00011111222 3322211112222322 1222489999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 025256 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+.+++++.+++.+
T Consensus 133 ~~LD~~~~~~l~~~L~~ 149 (200)
T cd03217 133 SGLDIDALRLVAEVINK 149 (200)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999999875
No 235
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=212.63 Aligned_cols=171 Identities=13% Similarity=0.112 Sum_probs=123.1
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCCC---
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVKP--- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~~--- 148 (255)
|.+++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|++.. ..|++|+ .+++....
T Consensus 1 ~~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 1 MYRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred CcEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 45689999999998633 67999999999999999999999999999999998631 1138898 45553221
Q ss_pred -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (255)
Q Consensus 149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (255)
...+. ++++... +. .++.++........+... ......+.+.++.+++. .+..+..||+||+
T Consensus 77 ~~~~~~~~~i~~-~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 77 VDVVELRKKVGM-VFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred ccHHHHhhheEE-EecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence 12333 5554332 22 255555543322222111 11123345566666552 3456779999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 236
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=1.3e-28 Score=208.62 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=117.2
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++|+++.|++..+. +++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++... .
T Consensus 3 l~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCCcc--cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 6889999999753212 6799999999999999999999999999999999997 99998 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~q 215 (255)
...+. +.++... +. .++.++... ..........+.++.+++. ....+..||+||+|
T Consensus 78 ~~i~~-~~q~~~l-~~--~tv~enl~~-------~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 78 SRISI-IPQDPVL-FS--GTIRSNLDP-------FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred hhEEE-ECCCCcc-cc--chHHHHhCc-------CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 12333 4444332 21 244333321 1112223344444444332 12466799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999753
No 237
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=194.96 Aligned_cols=168 Identities=19% Similarity=0.208 Sum_probs=135.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC-----CC---
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-----VK--- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~-----~~--- 147 (255)
.|+++++.+.||..+ +|-||+|+-++|+.+.++||||+|||||+|.|.-+.- |.+|+ .+.++ ..
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 378999999999977 8899999999999999999999999999999998876 99998 33221 11
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHH-HhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhh
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ 218 (255)
+.+.|. ++ ..|+++ +.+++.+|..+.. +..|++.+.......++++++.+. .+..+-.|||||+|||+
T Consensus 75 k~i~~lr~~vgm-vf-qqy~lw-phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 75 KAIRDLRRNVGM-VF-QQYNLW-PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHHHHHhhhh-hh-hhhccC-chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 234454 32 234443 3478777765543 346677666677788899988876 56677799999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||||+++|+++++||||+.|||+-..++.++|.+.
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel 187 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999874
No 238
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=213.77 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=126.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~- 147 (255)
.+.+.++++++.|++.. +++++||++++|++++|+|+||||||||+++|+|++. | ++|+ .+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEecc
Confidence 35688999999998744 7799999999999999999999999999999999996 5 6888 4555321
Q ss_pred ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC------CCCCCCCCcc
Q 025256 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFDHG 212 (255)
Q Consensus 148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~------~~~~~~lS~G 212 (255)
+...+. ++++...+ .+++.++..+.....+.. ......+.++++.+++.. +..+..||+|
T Consensus 79 ~~~~~~~~~~~~i~~-v~q~~~~~---~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 153 (261)
T PRK14263 79 GKGVDPVVVRRYIGM-VFQQPNPF---SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG 153 (261)
T ss_pred ccccchHhhhhceEE-EecCCccc---cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 112333 55554322 156666665443222221 112245667777777642 3456689999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+++|++++.+|++||+||||++||+..++++.++|.+.
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~ 195 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999763
No 239
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=1.5e-29 Score=216.49 Aligned_cols=162 Identities=14% Similarity=0.146 Sum_probs=115.5
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++|+++.|++... .+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 i~~~~l~~~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDGP--VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCCc--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 468899999974211 26799999999999999999999999999999999997 99999 4665321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHH---------HHHHHhhcCC----CCCCCCCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQ----GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l~l~----~~~~~~~lS~G~~q 215 (255)
...+. +.++... +. .++.++..... . ....... .++++.+..+ .+.++..||+||+|
T Consensus 76 ~~i~~-~~q~~~~-~~--~tv~~nl~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q 145 (237)
T cd03252 76 RQVGV-VLQENVL-FN--RSIRDNIALAD-----P-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ 145 (237)
T ss_pred hcEEE-EcCCchh-cc--chHHHHhhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence 12333 4554332 21 34444432210 1 0111111 2223333111 23467799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 184 (237)
T cd03252 146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI 184 (237)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 240
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-28 Score=234.32 Aligned_cols=162 Identities=12% Similarity=0.114 Sum_probs=125.5
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (255)
++++++||++.|++.. +++++||+|++|++++|+||||||||||+|+|+|+++ |++|++ +++. ...|.
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~- 386 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGY- 386 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE-
Confidence 4799999999998643 6799999999999999999999999999999999997 999994 5542 23444
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++........+++.++... +.. .......+.++++.+++. .+.++..||+||+||+++|++++.+|++||
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~----~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll 461 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQ----WRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461 (530)
T ss_pred EcccccccCCCCCcHHHHHHH----hcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 555432111122454443321 111 112334567888888873 467788999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||||++||+.+++.+.++|.+
T Consensus 462 LDEPt~~LD~~~~~~l~~~l~~ 483 (530)
T PRK15064 462 MDEPTNHMDMESIESLNMALEK 483 (530)
T ss_pred EcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 241
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-28 Score=213.35 Aligned_cols=166 Identities=13% Similarity=0.151 Sum_probs=117.9
Q ss_pred eEEEccceeecccc----------------ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 77 VVEARCMDEVYDAL----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 77 ~l~i~~lsk~y~~~----------------~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
.++++||+|.|... .....+++++||+|++|++++|+||||||||||+++|+|++. |++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~ 80 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK 80 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence 46777777777542 012347799999999999999999999999999999999997 88888
Q ss_pred -ccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchh
Q 025256 141 -SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 141 -~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv 217 (255)
.+++.. +. +.+... ....+++.++........+............+++.+++. .+..+..||+||+||+
T Consensus 81 I~~~g~~-----~~-~~~~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 81 VDRNGEV-----SV-IAISAG--LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL 152 (264)
T ss_pred EEECCEE-----eE-EecccC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence 344421 11 222211 112245555554332222322111122234566666655 3456779999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~ 188 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE 188 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 242
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.4e-28 Score=209.43 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=113.2
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++|+++.|++. .. +++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++... .
T Consensus 3 l~~~~l~~~~~~~-~~--~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 3 IEFENVNFSYDEK-KP--VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred EEEEEEEEecCCC-Cc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHHh
Confidence 7899999999742 12 6799999999999999999999999999999999997 89998 4555221 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC-----------C--CCCCCCCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-----------Q--GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~lS~G~~q 215 (255)
...+. +.++... +. .++.++... ... ......+...++.+++ . ....+..||+||+|
T Consensus 77 ~~i~~-~~q~~~~-~~--~tv~~~~~~-----~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 77 SMIGV-VLQDTFL-FS--GTIMENIRL-----GRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred hhEEE-ecCCchh-hh--hHHHHHHhc-----cCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 11233 4443321 11 133332211 111 1112222333332221 1 23446799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+..++.+.+++.+.
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL 185 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 243
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=1.7e-28 Score=208.74 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=123.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD 150 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~ 150 (255)
++.++||++.|.+......+++++||++++|++++|+||||||||||+|+|+|++....|++|+ .+++... +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 4678999999965310122679999999999999999999999999999999998311147898 4555321 122
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCC---CCCcHHHHHH-HHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~---~~~~~~~~~~-~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
.+. ++++.... ..+++.++..+........ .......... .++.+++. .+..+..||+||+||+++|++++
T Consensus 83 i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAY-VRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEE-eCCCCccC--cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 333 45443322 2357777766543222111 1111112233 67766665 34567899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+++|+||||++||+.+++.+.+++.+
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~ 188 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQ 188 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 244
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=204.25 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=124.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCC-----
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD----- 150 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~----- 150 (255)
|++++||+|.|++.. +++++|++|++|.+++|+|||||||||||.+++.+++ +++|+ .+++......
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 588999999999865 7799999999999999999999999999999999997 77776 3444221110
Q ss_pred --eeEEEecCCCCCcCccCCcccChHHHHH--hcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 151 --~g~~i~~d~~~~~~~~l~~~e~~~~~~~--~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
.-.++.+.+.. ...+++.+...+.+. -.|-+-..+...+.+.++.+.+. .+.+..+|||||+||..+|..++
T Consensus 74 Ak~lSILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 74 AKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 00111121111 112344333322211 11223344566678888888876 57889999999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.+.++||||.+.||..+..++++++...
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999888653
No 245
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=2.3e-28 Score=204.80 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=111.2
Q ss_pred EEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEEE
Q 025256 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (255)
Q Consensus 78 l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (255)
++++||++.|++..+ ...+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++ ..+. +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~-~ 71 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAY-V 71 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEE-E
Confidence 468999999976310 0126799999999999999999999999999999999997 99998 4554 2343 4
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------C----CCCCCCCCCccccchhhhhhh
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~~qrv~~a~~ 222 (255)
.++..... .++.++..+ ...+........++.+++ + .......||+||+||+++|++
T Consensus 72 ~q~~~l~~---~t~~enl~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lara 141 (204)
T cd03250 72 SQEPWIQN---GTIRENILF-------GKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARA 141 (204)
T ss_pred ecCchhcc---CcHHHHhcc-------CCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 55543221 344443322 111112222222222221 1 234467899999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHH-HHH
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD 252 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~-ll~ 252 (255)
++.+|+++|+|||+++||+..++.+.+ ++.
T Consensus 142 l~~~p~llllDEP~~~LD~~~~~~l~~~ll~ 172 (204)
T cd03250 142 VYSDADIYLLDDPLSAVDAHVGRHIFENCIL 172 (204)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998887 444
No 246
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.5e-29 Score=233.70 Aligned_cols=173 Identities=15% Similarity=0.163 Sum_probs=126.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCcc-ccCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK------ 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~~~~~------ 147 (255)
++++++||++.|+.... ..+++++||+|++|++++|+||||||||||+|+|+|+++ | ++|+ .+++...
T Consensus 258 ~~l~~~~l~~~~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 258 VILEVRNLTAWDPVNPH-IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred ceEEEecCccccccccc-cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCHH
Confidence 47999999999942101 126799999999999999999999999999999999985 5 8999 4555321
Q ss_pred ---CCCeeEEEecCCC-CCcCccCCcccChHHHHH-hc-CC---CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccc
Q 025256 148 ---PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR-GA---PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 ---~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~-~~-g~---~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q 215 (255)
....+. +.++.. ......+++.++...... .+ +. ........+.++++.+++. .+.++..|||||+|
T Consensus 334 ~~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 334 QAIAQGIAM-VPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHCCCEE-eCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 112444 555431 011123566665543211 11 10 1111223467888888884 35677899999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++++.+|++||+||||++||+.+++++.++|.+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 450 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ 450 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 247
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.96 E-value=7.8e-29 Score=211.47 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=113.2
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCeeEEEecCCCCCcCccCCcccC
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMED 172 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~d~~~~~~~~l~~~e~ 172 (255)
++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....+. +.++.... ..+++.++
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~-v~q~~~l~--~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMV-VFQNYSLL--PWLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheE-EecCcccC--CCCCHHHH
Confidence 479999999999999999999999999999999997 99999 4655322 122343 55543322 22566666
Q ss_pred hHHHHHh-c-CCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256 173 PKEAHAR-R-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 173 ~~~~~~~-~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~ 248 (255)
....... . +.........+.++++.+++. .+..+..||+||+||+++|++++.+|++||+||||++||+.+++++.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 6543211 1 111111223456778887775 35667799999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 025256 249 SMFDE 253 (255)
Q Consensus 249 ~ll~~ 253 (255)
++|.+
T Consensus 155 ~~l~~ 159 (230)
T TIGR01184 155 EELMQ 159 (230)
T ss_pred HHHHH
Confidence 99875
No 248
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=9.1e-29 Score=258.10 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=136.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|+++||+|.|++. ...+++++||+|++||++||+||||||||||+|+|+|++. |++|+ .++|...
T Consensus 1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence 479999999999852 1227899999999999999999999999999999999998 99999 4555322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
+...|. +.++.... ..+++.|+.......++++.......+.++++.+++. .+.++..||||||||+++|+||+.
T Consensus 2011 r~~IGy-~pQ~~~L~--~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2011 HQNMGY-CPQFDAID--DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred hhhEEE-EeccccCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 223555 55544322 2378888887665556664433334556788888876 467788999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|+|||+||||+|||+..++.++++|.+.
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998763
No 249
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=212.33 Aligned_cols=168 Identities=12% Similarity=0.074 Sum_probs=121.6
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc-c-CCCCcc-ccCCCCC-------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKAS-SFDSQVK------- 147 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~-~-~p~~G~-~~~~~~~------- 147 (255)
-+++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+... . .|++|+ .+++...
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 46889999997643 67999999999999999999999999999999999730 0 136898 4555321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC--CcHHHHHHHHHhhcCCC------CCCCCCCCccccch
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDP 216 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~--~~~~~~~~~l~~l~l~~------~~~~~~lS~G~~qr 216 (255)
+...+. ++++...+. .++.++..+.....+.... .....+.++++.+++.. +..+..||+||+||
T Consensus 82 ~~~~~~i~~-v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 82 VLLRAKVGM-VFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred HHHhhhEEE-EecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 112333 555543222 2555555443222222111 11233567788887742 34667999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 250
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=215.57 Aligned_cols=173 Identities=16% Similarity=0.116 Sum_probs=125.3
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC---
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK--- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~--- 147 (255)
+.++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++. .+|++|+ .+++...
T Consensus 42 ~~~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CCceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 345799999999998743 77999999999999999999999999999999999841 1258998 4555321
Q ss_pred -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC------------CC-CCCcHHHHHHHHHhhcCC------
Q 025256 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------AP-WTFNPLLLLNCLKNLRNQ------ 201 (255)
Q Consensus 148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g------------~~-~~~~~~~~~~~l~~l~l~------ 201 (255)
+...+. +.++.. ++. .++.++..+.....+ .. .......+.++++.+++.
T Consensus 118 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 118 GVNLVELRKRVGM-VFQSPN-PFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred cccHHHHhhceEE-EccCCc-ccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 112333 444432 222 356565554322111 00 011123456667777653
Q ss_pred CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 202 ~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.++..||+||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~ 246 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL 246 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 24567799999999999999999999999999999999999999999998753
No 251
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=232.75 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=122.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEE
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i 155 (255)
||+++|+++.|++.. +++++||+|++|++++|+||||||||||+|+|+|+++ |++|++ +++. ...+. +
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~-~ 69 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGK-L 69 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-E
Confidence 488999999998643 6799999999999999999999999999999999997 999994 5542 23444 5
Q ss_pred ecCCCCCcCccCCcccChHHHHH-----------hcCCCC---------------------CCcHHHHHHHHHhhcCCC-
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHA-----------RRGAPW---------------------TFNPLLLLNCLKNLRNQG- 202 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~-----------~~g~~~---------------------~~~~~~~~~~l~~l~l~~- 202 (255)
.++... + ..+++.++...... ..+.+. ......+.++++.+++..
T Consensus 70 ~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 70 RQDQFA-F-EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred eccCCc-C-CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 554322 1 22455554432110 001000 001234567888888853
Q ss_pred --CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 203 --SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 --~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+..+..||+||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999999999998854
No 252
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.9e-29 Score=233.74 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=124.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++|+++.|+. +++++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 264 ~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 47999999997642 6799999999999999999999999999999999997 99999 46553211
Q ss_pred ---CCeeEEEecCCC-CCcCccCCcccChHHHHHh----c----CC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCcc
Q 025256 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR----R----GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (255)
Q Consensus 149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~----~----g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G 212 (255)
...+. ++++.. ......+++.++....... . +. ........+.++++.+++. .+.++..||||
T Consensus 335 ~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 335 AVKKGMAY-ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG 413 (510)
T ss_pred HHHCCcEE-ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence 12344 555421 1111235665554332110 0 11 0011123456788888884 35677899999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 454 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975
No 253
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.9e-29 Score=233.48 Aligned_cols=164 Identities=14% Similarity=0.086 Sum_probs=122.8
Q ss_pred EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---------C
Q 025256 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---------P 149 (255)
Q Consensus 80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---------~ 149 (255)
++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.... .
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 468999998643 6799999999999999999999999999999999997 99999 46663221 2
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHH-hcCC--CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~--~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
..+. +.++.... ..+++.++..+... ..+. ........+.++++.+++. .+.++..||+||+||+++|++++
T Consensus 74 ~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 74 GISM-VHQELNLV--LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred CEEE-Eecccccc--cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 2444 55554322 22566665543211 0111 1111123456778888775 35667899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+..++.+.++|.+
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 254
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=4.5e-28 Score=203.43 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=117.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
..++++++++.|+.... .+++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 5 ~~l~~~~l~~~~~~~~~--~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 5 GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CeEEEEEEEEEeCCCCc--ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence 35899999999975211 26799999999999999999999999999999999997 99999 4555321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccC
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
....+. +.++... +. .++.++... ........+.+.++ .+.++..||+||+||+++|++++.+
T Consensus 80 ~~~~i~~-v~q~~~~-~~--~tv~~~l~~-------~~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 80 LRSSLTI-IPQDPTL-FS--GTIRSNLDP-------FDEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HHhhEEE-EecCCcc-cC--ccHHHHhcc-------cCCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 122343 4554422 21 244443321 11122233333333 3466789999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|+||||++||+..++.+.++|.+.
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREE 171 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998753
No 255
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=3.2e-29 Score=198.89 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=123.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCC-----
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD----- 150 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~----- 150 (255)
.++++++.+.-++.. +|+++||++++||+++|+||||||||||+|+++-++. |++|+ .|.|+.+..-
T Consensus 3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 466677766666543 6799999999999999999999999999999999998 89998 4666432110
Q ss_pred --eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhcc
Q 025256 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 151 --~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
...++.+..-.+. -++.+|..+...... ..++...+...++++.++ ....+-.||||++||++++|.|..
T Consensus 76 Rq~VsY~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~ 150 (223)
T COG4619 76 RQQVSYCAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF 150 (223)
T ss_pred HHHHHHHHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc
Confidence 0011111111111 134444433222221 234677888999999987 467788999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
-|+||+|||||+.||+.+.+.+-++|+.-
T Consensus 151 ~P~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 151 MPKILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred CCceEEecCchhhcChhhHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 256
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.4e-29 Score=213.90 Aligned_cols=162 Identities=16% Similarity=0.142 Sum_probs=115.0
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++|+++.|++.... +++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++... .
T Consensus 1 i~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDGPP--VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCCcc--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 4688999999763112 6799999999999999999999999999999999997 99999 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHH---------HHHHHhh--cCC--CCCCCCCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~lS~G~~q 215 (255)
...+. +.++... +. .++.++..... . ....... .+.++.+ ++. .+..+..||+||+|
T Consensus 76 ~~i~~-~~q~~~~-~~--~tv~enl~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q 145 (234)
T cd03251 76 RQIGL-VSQDVFL-FN--DTVAENIAYGR-----P-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ 145 (234)
T ss_pred hhEEE-eCCCCee-cc--ccHHHHhhccC-----C-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence 12333 4444322 21 24444332211 1 1111111 2333333 122 24456799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 184 (234)
T cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERL 184 (234)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 257
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-28 Score=228.54 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=122.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (255)
++++++||++.|++.. ...+|+++||++++|++++|+||||||||||+++|+|++. |++|+ .+++... .
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~- 89 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----L- 89 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----e-
Confidence 4689999999997742 1236799999999999999999999999999999999997 88998 3544221 1
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ilil 232 (255)
+.+... ....+++.++..+.....+............+++.+++. .+..+..||+||+||+++|++|+.+|++||+
T Consensus 90 i~~~~~--l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLL 167 (549)
T PRK13545 90 IAISSG--LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVI 167 (549)
T ss_pred EEeccc--cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 111111 112256666554432222322111122345677777775 3567789999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHh
Q 025256 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 DEp~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||+..++.+.++|.+
T Consensus 168 DEPTsgLD~~sr~~LlelL~e 188 (549)
T PRK13545 168 DEALSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred ECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999865
No 258
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=2.2e-28 Score=233.10 Aligned_cols=166 Identities=16% Similarity=0.100 Sum_probs=126.8
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
.++++++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|++..+. ....+.
T Consensus 320 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~--~~~i~~- 389 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGE--TVKLAY- 389 (552)
T ss_pred CeEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECC--ceEEEE-
Confidence 35799999999998643 7799999999999999999999999999999999997 9999943232 123454
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++...++ ..+++.++........+... .......+++.+++. .+..+..||+||+||+++|++++.+|++||
T Consensus 390 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 390 VDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred EeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 555532111 23566665544221112111 122345678888874 356788999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||||++||+.+++.+.++|.+
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~ 488 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLE 488 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 259
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=2.9e-28 Score=232.45 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=126.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++++++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|++..+. ....|. +
T Consensus 323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~--~~~i~~-v 392 (556)
T PRK11819 323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGE--TVKLAY-V 392 (556)
T ss_pred eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC--ceEEEE-E
Confidence 4799999999998743 7799999999999999999999999999999999997 9999943232 123454 5
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ilil 232 (255)
.++...+ ...+++.++........+.. ........+++.+++. .+..+..||+||+||+++|++++.+|++||+
T Consensus 393 ~q~~~~~-~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 393 DQSRDAL-DPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred eCchhhc-CCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5543111 22356666554432111211 1122345678888874 3667889999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHh
Q 025256 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 DEp~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||+.+++.+.++|.+
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~ 490 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLE 490 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999875
No 260
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=1.2e-28 Score=231.81 Aligned_cols=172 Identities=16% Similarity=0.018 Sum_probs=121.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCcc-ccCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK----- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~~~~~----- 147 (255)
.++++++|+++.|++.. +++++||++++|++++|+||||||||||+|+|+|++. | ++|+ .+++...
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 45899999999998643 6799999999999999999999999999999999873 4 5898 4555321
Q ss_pred ----CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCC---CCcHHHHHHHHHhhcCCC---CCCCCCCCccccch
Q 025256 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW---TFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDP 216 (255)
Q Consensus 148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~---~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qr 216 (255)
+...+. +.++.........+..+........ .+... ......+.++++.+++.. +.++..||+||+||
T Consensus 331 ~~~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 331 IWDIKKHIGY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred HHHHHhhceE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence 112333 3433211111001221111110000 01111 111234677888888763 55677999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++++.+|++||+||||++||+.+++++.++|.+.
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l 447 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763
No 261
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=5e-28 Score=230.61 Aligned_cols=165 Identities=16% Similarity=0.057 Sum_probs=123.0
Q ss_pred ceEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 76 ~~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
.+++++||++.|+ +.. +++++||+|++|++++|+||||||||||+++|+|++. |++|++ +++ ....|.
T Consensus 3 ~~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~ 72 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAP---GIKVGY 72 (552)
T ss_pred EEEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEE
Confidence 3799999999997 432 6799999999999999999999999999999999997 999994 443 123444
Q ss_pred EEecCCCCCcCccCCcccChHHHHHh--------------cCCCCCC----------------------cHHHHHHHHHh
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKN 197 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~--------------~g~~~~~----------------------~~~~~~~~l~~ 197 (255)
+.++... + ..+++.++..+.... .+..... ....+.++++.
T Consensus 73 -v~Q~~~~-~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 73 -LPQEPQL-D-PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred -EeccCCC-C-CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 5555432 1 235666665542110 0111000 01223455666
Q ss_pred hcCC-CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 198 LRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 198 l~l~-~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++. .+..+..||+||+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 150 ~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence 6663 3566789999999999999999999999999999999999999999998865
No 262
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.6e-28 Score=202.65 Aligned_cols=171 Identities=15% Similarity=0.090 Sum_probs=123.8
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
.+++|+++||+..|+++. +|+++|++|++||-.+|+|||||||||||++++|... |.+|. .+.|...
T Consensus 28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence 457899999999999965 7799999999999999999999999999999999995 88777 2222110
Q ss_pred ----CCCeeEEEe--cCCCCCcCccCCcccChHH-HHHhcCCCC-CC---cHHHHHHHHHhhcCC--CCCCCCCCCcccc
Q 025256 148 ----PPDVATVLP--MDGFHLYLSQLDAMEDPKE-AHARRGAPW-TF---NPLLLLNCLKNLRNQ--GSVYAPSFDHGVG 214 (255)
Q Consensus 148 ----~~~~g~~i~--~d~~~~~~~~l~~~e~~~~-~~~~~g~~~-~~---~~~~~~~~l~~l~l~--~~~~~~~lS~G~~ 214 (255)
+...|. ++ +... +..+.++.+-... ...-.|+.+ .. +......+++.+++. .+.+...||-||+
T Consensus 101 ~~elrk~IG~-vS~~L~~~--~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~ 177 (257)
T COG1119 101 IFELRKRIGL-VSSELHER--FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQ 177 (257)
T ss_pred hHHHHHHhCc-cCHHHHhh--cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHH
Confidence 122232 11 0111 0111112211100 111234333 22 344557788888776 5677889999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+.+||||+.+|++||||||+.|||...++.+.+.|.+.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 263
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=1.7e-28 Score=231.26 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=124.6
Q ss_pred ceEEEccceeecccc-ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCcc-ccCCCCCC----
Q 025256 76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVKP---- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~-~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~~~~~~---- 148 (255)
++++++|+++.|+.. ... +++++||+|++|++++|+||||||||||+|+|+|+++ | ++|+ .+++....
T Consensus 256 ~~l~~~~l~~~~~~~~~~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRK--RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccccccc--ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCH
Confidence 479999999999421 112 6799999999999999999999999999999999995 6 7999 45553211
Q ss_pred -----CCeeEEEecCCC--CCcCccCCcccChHHHHH-hc-C---CCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccc
Q 025256 149 -----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 149 -----~~~g~~i~~d~~--~~~~~~l~~~e~~~~~~~-~~-g---~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~ 213 (255)
...|. +.++.. .+. ..+++.++...... .. . .........+.++++.+++. .+.++..||+||
T Consensus 331 ~~~~~~~i~~-v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 331 AQAIRAGIAM-VPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred HHHHhCCCEE-cCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 12344 444421 111 22455554433211 11 1 11111223467888888884 356778999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|++++.+|++||+||||++||+.+++.+.+++.+.
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 449 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988753
No 264
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.95 E-value=3.3e-28 Score=253.96 Aligned_cols=171 Identities=15% Similarity=0.178 Sum_probs=136.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
.+.|+++||+|.|++..+ .+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 926 ~~~L~I~nLsK~y~~~~k--~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGR--PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred CceEEEEeEEEEecCCCc--eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence 357999999999963111 27799999999999999999999999999999999998 99999 4665322
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
+...|. +.++... ...+++.++..+.....+.........+.++++.+++. .+.++..||||||||+++|+|++
T Consensus 1001 ~r~~IG~-~pQ~~~L--~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1001 VRQSLGM-CPQHNIL--FHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred HhhcEEE-EecCCcC--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 123454 5555432 23478888887765555554333344567888888886 45678899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++||+||||++||+..++.++++|.+
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999976
No 265
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=6.7e-28 Score=233.08 Aligned_cols=166 Identities=14% Similarity=0.041 Sum_probs=120.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
|++|+++||++.|++.. +|+++||+|++|+++||+||||||||||||+|+|++. |++|++ ++++. ..+.
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~ 70 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR 70 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE
Confidence 45899999999998743 6799999999999999999999999999999999997 899984 44321 1121
Q ss_pred EEecCCCCCcCccCCcccCh------------------------------HHHHH---hcC-CCCCCcHHHHHHHHHhhc
Q 025256 154 VLPMDGFHLYLSQLDAMEDP------------------------------KEAHA---RRG-APWTFNPLLLLNCLKNLR 199 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~------------------------------~~~~~---~~g-~~~~~~~~~~~~~l~~l~ 199 (255)
+.+.... ....++.+.. ..... .+. .........+.++++.++
T Consensus 71 -l~q~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 71 -LQQDPPR--NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred -eccCCCC--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 2221100 0000111100 00000 000 000112345677888888
Q ss_pred CCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 200 l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+..+..+..|||||+|||++|++|+.+|++|||||||++||+.+++.+.++|..
T Consensus 148 l~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~ 201 (635)
T PRK11147 148 LDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT 201 (635)
T ss_pred CCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh
Confidence 876778889999999999999999999999999999999999999999998864
No 266
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=3.5e-28 Score=193.14 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=95.8
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++ |. +.+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~-------------G~-i~~ 59 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDE-------------GI-VTW 59 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCc-------------eE-EEE
Confidence 46789999997643 6799999999999999999999999999999999994 444 44 444
Q ss_pred CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~ 236 (255)
++.. ..++ ++ ||+||+||+++|++++.+|+++|+|||+
T Consensus 60 ~~~~-----------------~i~~~~~------------------------lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 60 GSTV-----------------KIGYFEQ------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred CCeE-----------------EEEEEcc------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4420 1111 11 9999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 025256 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..+..+.+++.+
T Consensus 99 ~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 99 NHLDLESIEALEEALKE 115 (144)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999999865
No 267
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=4.9e-28 Score=233.85 Aligned_cols=163 Identities=17% Similarity=0.106 Sum_probs=123.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC--------C
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------K 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~--------~ 147 (255)
-++++||++.|+.... .+|+|+||+|++||.+||+|+||||||||+|+|.|++. |+.|+ .+||.. .
T Consensus 471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 5899999999987532 36799999999999999999999999999999999998 99999 466632 1
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHH---------HhhcCCCCCC----CCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNLRNQGSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l---------~~l~l~~~~~----~~~lS~G~~ 214 (255)
+...|. +.+|++.... +..||... +.|. .+.+.+.+.+ .++-++.+.. ...||||||
T Consensus 546 R~~ig~-V~Q~~~Lf~g---SI~eNi~l-----~~p~-~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 546 RRQVGY-VLQDPFLFSG---SIRENIAL-----GNPE-ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HhheeE-EcccchhhcC---cHHHHHhc-----CCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 445565 7787765442 44443322 2232 2233333333 3333333333 347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++||+++.+|+|||+||||++||+.+.+.+.+.+.+.
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764
No 268
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.1e-28 Score=194.37 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=131.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCee---
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVA--- 152 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g--- 152 (255)
+++++|++...+... .+.+++|++.+||++-|.||||||||||||+|+|+++ |++|++ +.+........
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 467888988887744 6699999999999999999999999999999999998 999994 44322111110
Q ss_pred EEEecCCCC-CcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256 153 TVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 153 ~~i~~d~~~-~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
..+.+-|.. --...+++.||..+.....+. .+...+.+.++.+++. .+.+...||-||++||++||..+..+++
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence 101111111 113458899999998776654 3345677888999987 4666779999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 230 VIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 230 lilDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|+|||+++||......+-.++.+.
T Consensus 152 WiLDEP~taLDk~g~a~l~~l~~~H 176 (209)
T COG4133 152 WILDEPFTALDKEGVALLTALMAAH 176 (209)
T ss_pred eeecCcccccCHHHHHHHHHHHHHH
Confidence 9999999999999999998888654
No 269
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=6.9e-28 Score=206.37 Aligned_cols=163 Identities=16% Similarity=0.151 Sum_probs=112.7
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++|+++.|++.. ...+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 46889999997521 1126799999999999999999999999999999999997 99999 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHH---------HHHHhh--cCC--CCCCCCCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNL--RNQ--GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~---------~~l~~l--~l~--~~~~~~~lS~G~~q 215 (255)
...+. +.++... +. .++.++... +... ....... +.++.+ ++. ....+..||+||+|
T Consensus 77 ~~i~~-~~q~~~~-~~--~tv~e~l~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 146 (238)
T cd03249 77 SQIGL-VSQEPVL-FD--GTIAENIRY-----GKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQ 146 (238)
T ss_pred hhEEE-ECCchhh-hh--hhHHHHhhc-----cCCC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHH
Confidence 12333 4433221 11 233333221 1111 1111111 122222 111 23456799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 147 rv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 185 (238)
T cd03249 147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA 185 (238)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 270
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=3.7e-28 Score=206.00 Aligned_cols=156 Identities=17% Similarity=0.080 Sum_probs=117.6
Q ss_pred ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC-------CeeEEEecCCCCCcC
Q 025256 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP-------DVATVLPMDGFHLYL 164 (255)
Q Consensus 93 ~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~-------~~g~~i~~d~~~~~~ 164 (255)
.+.++.|+||+|++|+++|++|||||||||++|+|.|++. |++|. .++|..... ..+.+ +..+....
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G~v~V~G~~Pf~~~~~~~~~~~~v--~gqk~ql~ 110 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSGKVRVNGKDPFRRREEYLRSIGLV--MGQKLQLW 110 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCCeEEecCcCcchhHHHHHHHHHHH--hhhhheee
Confidence 3668899999999999999999999999999999999997 88887 344432110 11111 11111112
Q ss_pred ccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 165 ~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~ 242 (255)
.+++..+.....+..+.++.+.-.+....+.+.+.+. .+.++..||-|||.|+.+|.+|+++|+||+|||||.+||..
T Consensus 111 Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~ 190 (325)
T COG4586 111 WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190 (325)
T ss_pred eechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchh
Confidence 2344555555555566666544445556666777777 67778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 025256 243 VWKDVSSMFDE 253 (255)
Q Consensus 243 ~~~~l~~ll~~ 253 (255)
.+..+++++.+
T Consensus 191 aq~~ir~Flke 201 (325)
T COG4586 191 AQANIREFLKE 201 (325)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 271
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=3.6e-28 Score=223.78 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=133.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP---- 149 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~---- 149 (255)
+++++++|++|+|++.+ ||++|||++++||+++|+|.||||||||+|+|+|.++ |++|+ .++|+....
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 46899999999999876 9999999999999999999999999999999999998 99999 577754321
Q ss_pred ---CeeE-EEecCCCCCcCccCCcccChHHHHHh---cCC-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 150 ---DVAT-VLPMDGFHLYLSQLDAMEDPKEAHAR---RGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 150 ---~~g~-~i~~d~~~~~~~~l~~~e~~~~~~~~---~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
..|. +|+|+-... +++++.+|+...+.. +++ .+.........+++.+++. .+..+..||.||+|.|+|
T Consensus 79 ~A~~~GI~~V~QEl~L~--p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechhcc--CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 1232 245544333 347887776543322 222 2222334557788877764 566777999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+|+..++++|||||||+.|+....+.+.+++.+
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988865
No 272
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.9e-28 Score=232.10 Aligned_cols=163 Identities=16% Similarity=0.058 Sum_probs=119.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEE
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i 155 (255)
||+++||++.|++.. +|+++||+|++|+++||+||||||||||||+|+|++. |++|++ +++.. ..+. +
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~-~ 69 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAW-V 69 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEE-E
Confidence 488999999998754 6799999999999999999999999999999999987 999984 44421 1232 3
Q ss_pred ecCCCCCcCccCCcccChH-----------------------HHH---HhcC-CCCCCcHHHHHHHHHhhcCC---CCCC
Q 025256 156 PMDGFHLYLSQLDAMEDPK-----------------------EAH---ARRG-APWTFNPLLLLNCLKNLRNQ---GSVY 205 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~-----------------------~~~---~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~ 205 (255)
.++..... .+..+... ... .... .........+..+++.+++. .+.+
T Consensus 70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 33221110 11111000 000 0000 00111224567788888885 3567
Q ss_pred CCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 206 ~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+..|||||+||+++|++|+.+|++|||||||++||+.+...+.++|.+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~ 194 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS 194 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999999998864
No 273
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.4e-28 Score=226.81 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=125.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
-.|+++||++.|+... .+.+|+|+||+|++||++||+||||+||||++++|..++. |++|+ .+||...
T Consensus 464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKY 539 (716)
T ss_pred ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHH
Confidence 3699999999998863 4557899999999999999999999999999999999998 99999 4776432
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHH---------HHHHhhcCCCCCC----CCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQGSVY----APSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~---------~~l~~l~l~~~~~----~~~lS~G~ 213 (255)
+...|. |.++..... -++.||+.+ |.+ ....+.+. +.+.++-.+.+.. ..+|||||
T Consensus 540 lr~~Ig~-V~QEPvLFs---~sI~eNI~Y-----G~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 540 LRRKIGL-VGQEPVLFS---GSIRENIAY-----GLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHHHeee-eeccceeec---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 233454 666654333 355565543 333 33333333 2333333443333 33899999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||++|||||+.+|.||||||.|++||.++...+.+.++.
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR 649 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999988875
No 274
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.1e-28 Score=205.98 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=112.0
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
++++|+++.|++. .. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++... .
T Consensus 1 l~~~~l~~~~~~~-~~--~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~ 74 (236)
T cd03253 1 IEFENVTFAYDPG-RP--VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR 74 (236)
T ss_pred CEEEEEEEEeCCC-Cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence 4688999999631 12 6799999999999999999999999999999999997 99998 4555321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHH---------HHHhhcCC----CCCCCCCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQ----GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~---------~l~~l~l~----~~~~~~~lS~G~~q 215 (255)
...+. +..+... +. .++.++..+. ... ........ .++.+..+ ....+..||+||+|
T Consensus 75 ~~i~~-~~q~~~~-~~--~tv~~nl~~~-----~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~ 144 (236)
T cd03253 75 RAIGV-VPQDTVL-FN--DTIGYNIRYG-----RPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ 144 (236)
T ss_pred hhEEE-ECCCChh-hc--chHHHHHhhc-----CCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 12333 4444322 21 2443333221 111 11111222 22222111 23346689999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++|+.+|+++|+||||++||+..++.+.++|.+
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865
No 275
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.95 E-value=6.4e-28 Score=228.82 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=123.5
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
.|+++||++.|++.. . +|+|+||++++|+.++|+||||||||||+++|+|++. |++|+ .+++....
T Consensus 334 ~I~~~~vsf~Y~~~~-~--vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP-P--VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC-c--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 589999999997532 2 6799999999999999999999999999999999998 99999 46663221
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~q 215 (255)
...+. ++++.+... -+..+|+.+ +. .+.+.+.+.++++..++. .+.. ...|||||||
T Consensus 408 ~~i~~-V~Q~~~lF~---~TI~eNI~~-----g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 408 RRISV-FAQDAHLFD---TTVRDNLRL-----GR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred hheEE-EccCccccc---ccHHHHHhc-----cC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 23444 777776543 255554432 21 223455566666655442 2322 3469999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|||++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988865
No 276
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.2e-28 Score=233.17 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=122.5
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
.++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+|+|+|+++ |++|++ ++.. ...|.
T Consensus 310 ~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~igy 379 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLGY 379 (638)
T ss_pred CceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEEE
Confidence 35799999999998744 6799999999999999999999999999999999997 999984 4321 13343
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~il 230 (255)
+.++.... ++........ ............+.++++.+++. .+.++..|||||+||+++|++++.+|++|
T Consensus 380 -~~Q~~~~~----l~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL 452 (638)
T PRK10636 380 -FAQHQLEF----LRADESPLQH--LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL 452 (638)
T ss_pred -ecCcchhh----CCccchHHHH--HHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 44432110 1111111111 11111122344567888888884 35678899999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHh
Q 025256 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 ilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||||||++||+.+++.+.++|.+
T Consensus 453 lLDEPt~~LD~~~~~~l~~~L~~ 475 (638)
T PRK10636 453 LLDEPTNHLDLDMRQALTEALID 475 (638)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999865
No 277
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-27 Score=190.70 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=129.5
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cC---CCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD---SQV---- 146 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~---~~~---- 146 (255)
.|++++.+++|.|+... ..++|||++.+||++||+|.|||||||||++|++.+. |+.|++ +. ++.
T Consensus 4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence 36899999999999865 6799999999999999999999999999999999997 999982 22 111
Q ss_pred ----------CCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCCC---CCCCCCCCcc
Q 025256 147 ----------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG---SVYAPSFDHG 212 (255)
Q Consensus 147 ----------~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G 212 (255)
.+.+.|. +.++..+-.+-..++-.|+-+.....|.. .........++++.+.+.. +-.+..||||
T Consensus 77 ~msEaeRR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 77 TMSEAERRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhchHHHHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 1345666 55554432222233344444433333321 1112345678899988874 3456799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+.|||.|+..|+++++||||.|||...+..+.+++.-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrg 196 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864
No 278
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=6.1e-28 Score=202.48 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=125.2
Q ss_pred ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEEEecC-CCCCcCccCCcc
Q 025256 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMD-GFHLYLSQLDAM 170 (255)
Q Consensus 93 ~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~i~~d-~~~~~~~~l~~~ 170 (255)
.+.+|+||||++++||.+||+|+||||||||+|+|+|.++ |++|+ .+.++.... +.+. |+ .++++..
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~l-----i~lg~Gf---~pelTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPL-----IELGAGF---DPELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehh-----hhcccCC---CcccchH
Confidence 4668999999999999999999999999999999999998 99998 455544211 1111 22 2337999
Q ss_pred cChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 171 e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~ 248 (255)
+|+.......|+......+...++.+.-.++ .+.++..||.||+-|++++.+...+|+|||+||..+..|+..+++..
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 9999988888886666667777888766665 57778899999999999999999999999999999999999998888
Q ss_pred HHHHhh
Q 025256 249 SMFDEK 254 (255)
Q Consensus 249 ~ll~~~ 254 (255)
+.+++.
T Consensus 188 ~rl~e~ 193 (249)
T COG1134 188 ERLNEL 193 (249)
T ss_pred HHHHHH
Confidence 887764
No 279
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=212.98 Aligned_cols=172 Identities=14% Similarity=0.118 Sum_probs=124.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~----- 147 (255)
.+|+++|+++.|.+... .+|+++||+|++|+++||+||||||||||+++|+|+.... -|++|+ .++|...
T Consensus 79 ~~i~~~nls~~y~~~~~--~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTK--HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 47999999999964211 2679999999999999999999999999999999998410 146898 4565432
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (255)
+...+. ++++.... . .++.+|+.+.....+.... .....+..+++.+.+. ...+...||+||+|
T Consensus 157 ~~~~lr~~i~~-v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 157 SSLELRTRIGM-VFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred chHhhhccEEE-EecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 122333 55554432 1 4666666543222222111 1112245666666652 34567799999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|||++.+|+|||+||||++||+...+.+.++|.+
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~ 270 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE 270 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998865
No 280
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=1.2e-27 Score=231.25 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=125.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
-.+|+++||++.|++.. +++++||+|++|++++|+||||||||||+|+|+|+++ |++|++..+. ....|.
T Consensus 317 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--~~~i~y- 386 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGT--KLEVAY- 386 (635)
T ss_pred CceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECC--CcEEEE-
Confidence 35799999999998743 6799999999999999999999999999999999997 9999943232 123444
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++...+ ...+++.++...... ..........+.++++.+++. .+.++..|||||+||+++|++++.+|++||
T Consensus 387 ~~q~~~~l-~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 387 FDQHRAEL-DPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred EeCccccc-CCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44432111 223466555433211 111011133466778887774 356778999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||||++||+.+++.+.+++.+
T Consensus 464 LDEPt~~LD~~~~~~l~~~l~~ 485 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELLDS 485 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998865
No 281
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.2e-28 Score=191.97 Aligned_cols=172 Identities=18% Similarity=0.171 Sum_probs=131.4
Q ss_pred eEEEccceeeccccc---cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc---cCCCCC---
Q 025256 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---FDSQVK--- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~---~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~---~~~~~~--- 147 (255)
.+.++|++|+|--.. -.+.+++++||+++.||+++|-||||+|||||||+|.+.+. ||+|++ ..+...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence 588999999994221 23567899999999999999999999999999999999998 999983 333211
Q ss_pred -----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccc
Q 025256 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV 213 (255)
Q Consensus 148 -----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~ 213 (255)
+.+.|+ +++.=..+++ ....+-........|++.+........++.++.+.. ...+..||||+
T Consensus 81 ~a~pr~vl~vRr~TiGy-VSQFLRviPR--V~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 81 TAEPREVLEVRRTTIGY-VSQFLRVIPR--VSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred ccChHHHHHHHHhhhHH-HHHHHHhccC--cchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 123343 3332222222 333343344444567766556667788888888874 45667999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|||.|||.++.+-+||+|||||+.||..++.-+.++|.++
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999874
No 282
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1.9e-27 Score=227.49 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=123.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
.++++++|+++.|++. .|+++||++++||+++|+||||||||||+|+|+|+++ |++|++ ++ ...+.
T Consensus 338 ~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y 404 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISY 404 (590)
T ss_pred ceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEE
Confidence 3579999999999752 3699999999999999999999999999999999997 999984 33 12333
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++... ...+++.++........ . ......++++.+++. .+.++..|||||+|||++|++|+.+|++||
T Consensus 405 -~~Q~~~~--~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL 476 (590)
T PRK13409 405 -KPQYIKP--DYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL 476 (590)
T ss_pred -ecccccC--CCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4444221 22356666554321111 1 123456788888875 467788999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||||++||+.++.++.++|.+
T Consensus 477 LDEPt~~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 477 LDEPSAHLDVEQRLAVAKAIRR 498 (590)
T ss_pred EeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 283
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=3.9e-27 Score=199.24 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=109.7
Q ss_pred EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---------
Q 025256 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------- 148 (255)
Q Consensus 79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------- 148 (255)
.+.++.+.|++.. .+++++||++++|++++|+||||||||||+++|+|++. |++|+ .+++....
T Consensus 2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 4678999997531 26799999999999999999999999999999999997 99999 45553210
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCcc
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHG 212 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G 212 (255)
...+. +.++... +. .++.++.... ..........+++.+++. ...++..||+|
T Consensus 76 ~~~~~i~~-~~q~~~~-~~--~t~~~nl~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 144 (218)
T cd03290 76 RNRYSVAY-AAQKPWL-LN--ATVEENITFG-------SPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG 144 (218)
T ss_pred hhcceEEE-EcCCCcc-cc--ccHHHHHhhc-------CcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence 11222 4444322 21 3444433221 111222233444444321 12456799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ 249 (255)
|+||+++|++++.+|+++|+||||++||+..++++.+
T Consensus 145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence 9999999999999999999999999999999998887
No 284
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.95 E-value=1e-27 Score=206.76 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=116.0
Q ss_pred EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------C
Q 025256 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------P 149 (255)
Q Consensus 79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------~ 149 (255)
+++||++. . +|+++||++++|++++|+||||||||||+++|+|++ |.+|+ .+++.... .
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence 46777774 1 679999999999999999999999999999999998 56898 46653221 1
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhcc--
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL-- 225 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~-- 225 (255)
..+. ++++..... .+++.++..+.. ..+.........+.++++.+++.. +..+..||+||+||+++|++++.
T Consensus 70 ~i~~-v~q~~~~~~--~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~ 145 (248)
T PRK03695 70 HRAY-LSQQQTPPF--AMPVFQYLTLHQ-PDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW 145 (248)
T ss_pred heEE-ecccCccCC--CccHHHHHHhcC-ccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 2333 444432221 245555443321 111111112345677888888753 56778999999999999999997
Q ss_pred -----CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 226 -----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 -----~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++||+||||++||+..++.+.+++.+.
T Consensus 146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~ 179 (248)
T PRK03695 146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL 179 (248)
T ss_pred cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 67999999999999999999999998753
No 285
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=215.74 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=132.8
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
++.+++++++|.|++.. |+++|||+|++||+++|+|.||||||||+++|.|+++ |++|+ .++|+...
T Consensus 2 ~~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 2 EPALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence 46799999999999766 9999999999999999999999999999999999998 99999 57775432
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhc-C--CCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g--~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
...|. +++.-..++ .+|+.||+....... + +........+.++.+.+++. .+.++..||-|++|||.|
T Consensus 75 dA~~~GIGM-VhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 75 DAIRLGIGM-VHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred HHHHcCCcE-Eeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 22444 554433322 378888775543221 1 01112334556777777765 567788999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.++|..++++|||||||+-|-|...+++++++..
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~ 185 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRR 185 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888764
No 286
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=5e-27 Score=203.53 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=114.8
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
.+..++++|+++.|+... ..+++++||++++|++++|+|+||||||||+++|+|++. |++|+ .+++...
T Consensus 16 ~~~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 16 LGGEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPL 90 (257)
T ss_pred CCceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCH
Confidence 456799999999997521 126799999999999999999999999999999999997 99999 4555321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHH---------HHhh--cCC--CCCCCCCCCc
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNL--RNQ--GSVYAPSFDH 211 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---------l~~l--~l~--~~~~~~~lS~ 211 (255)
....+. +.++.. ++. .++.++. .............. ++.+ ++. .......||+
T Consensus 91 ~~~~~~i~~-v~q~~~-l~~--~tv~~nl-------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~ 159 (257)
T cd03288 91 HTLRSRLSI-ILQDPI-LFS--GSIRFNL-------DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSV 159 (257)
T ss_pred HHHhhhEEE-ECCCCc-ccc--cHHHHhc-------CcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCH
Confidence 112333 444432 111 1222221 11111111122222 2222 111 1234568999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+||+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 201 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT 201 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998875
No 287
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=4.7e-27 Score=205.40 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=117.0
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~ 148 (255)
|+++||++.|.+.... +|+++||+|++|++++|+||||||||||+++|+|++ +++|+ .+++... +
T Consensus 3 i~~~nls~~~~~~~~~--~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred EEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHHHh
Confidence 7899999999532112 679999999999999999999999999999999999 67898 4665321 1
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCC-----------CCCCccccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYA-----------PSFDHGVGD 215 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~-----------~~lS~G~~q 215 (255)
...+. ++++... +. .++.++... ++ ....+.+.+.++.+++.. +..+ ..||+||+|
T Consensus 77 ~~i~~-v~q~~~l-f~--~tv~~nl~~----~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 77 KAFGV-IPQKVFI-FS--GTFRKNLDP----YG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred hhEEE-ECCCccc-ch--hhHHHHhhh----cc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 12333 5554432 21 233333321 11 123445666777776642 1222 249999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++||+++.+|+|||+||||++||+..++.+.++|.+.
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
No 288
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.94 E-value=4.2e-27 Score=227.84 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=131.1
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++|+++.|+.......+++++||++++||+++|+||||||||||+++|+|++. |++|+ .+++....
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence 479999999999642111226799999999999999999999999999999999998 99999 56664321
Q ss_pred ------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhh
Q 025256 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a 220 (255)
...+. ++++...+ .++++.++..+.....+...........++++.+++.. +..+..||+||+||+++|
T Consensus 80 ~~~~~~~~i~~-v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 80 LAQLRREHFGF-IFQRYHLL--SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HHHHHhccEEE-EeCCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence 12343 55554322 22466666654333333332223345677888887763 556779999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++++.+|+++|+|||+.+||+.+++.+.+++.+.
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l 190 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQL 190 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 289
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=3.3e-27 Score=226.31 Aligned_cols=163 Identities=14% Similarity=0.113 Sum_probs=123.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||++.|++..+. +|+|+||+|++|+.++|+|+||||||||+++|+|++. |++|+ .++|...
T Consensus 341 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCCCc--cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 58999999999753222 6799999999999999999999999999999999998 99999 5666322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCC----CCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~ 214 (255)
+...+ +++++.+... -+..+|+. .+.++..+.+.+.++++..++ +.+.. ...|||||+
T Consensus 416 ~~~i~-~v~Q~~~lf~---~Ti~~Ni~-----~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr 486 (582)
T PRK11176 416 RNQVA-LVSQNVHLFN---DTIANNIA-----YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486 (582)
T ss_pred Hhhce-EEccCceeec---chHHHHHh-----cCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence 12234 3777765433 24444332 222333455666666665443 22222 246999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+++.+.+.+
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988865
No 290
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.5e-27 Score=222.92 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=119.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++|+++|+++.|. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 249 ~~i~~~~l~~~~~--~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 249 VILEVRNLTSLRQ--P----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE 319 (491)
T ss_pred cEEEEeCcccccC--c----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence 4799999999852 2 6799999999999999999999999999999999997 99999 45553221
Q ss_pred ---CCeeEEEecCCC--CCcCccCCcccC-----hHHHHHhcCC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCcccc
Q 025256 149 ---PDVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (255)
Q Consensus 149 ---~~~g~~i~~d~~--~~~~~~l~~~e~-----~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~ 214 (255)
...+. +.++.. .++ ..++..++ ........+. ..........++++.+++. .+.++..|||||+
T Consensus 320 ~~~~~i~~-~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 320 AINHGFAL-VTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHCCCEE-cCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 11232 333311 011 11232221 1110001121 1111123456778887774 3667889999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|++++.+|+|||+||||++||+.+++++.+++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~ 436 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999865
No 291
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=4.3e-27 Score=229.49 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=123.4
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||+++|++..+. +|+|+||+|++|+.++|+|+||||||||+|+|+|++. |++|+ .++|...
T Consensus 451 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPL--ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCCcc--ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 58999999999643222 6799999999999999999999999999999999998 99999 4676322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|+.. +.+ .+.+.+.++++..++. .+. ....||||||
T Consensus 526 r~~i~~-v~Q~~~lf~---gTI~eNi~~-----~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 526 RRQLGV-VLQNGRLMS---GSIFENIAG-----GAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred HhccEE-EccCCccCc---ccHHHHHhc-----CCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 234454 777776433 244444432 212 4455566666655443 222 2347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+++|+||||++||+.+.+++.+.+..
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988864
No 292
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.1e-27 Score=194.04 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=115.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CC---
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PP--- 149 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~--- 149 (255)
||+++|++++..++. ++++++|++.+||+++|+||||||||||||.|+|.+. |++|+ .+++... ++
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 588999999998855 6799999999999999999999999999999999997 88888 3444221 00
Q ss_pred --CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC--CcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 150 --~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~--~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
..+. +.++...-+. +++.|-....+.-.+...+ .+......++....+. .......|||||+|||.+||+|
T Consensus 74 A~~raV-lpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 74 ARHRAV-LPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHHhhh-cccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 1122 3333221111 2333322222111111111 2222245566655543 4566789999999999999998
Q ss_pred cc------CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~------~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+. .+++|+|||||+.||...+..++.+..+
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~ 186 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHH
Confidence 54 2348899999999999999998887764
No 293
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=3e-27 Score=228.66 Aligned_cols=164 Identities=14% Similarity=0.112 Sum_probs=125.8
Q ss_pred EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--Ccc-ccCCCCC----CCCe
Q 025256 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQVK----PPDV 151 (255)
Q Consensus 79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~--~G~-~~~~~~~----~~~~ 151 (255)
.++|+++.|+++. +|+|+|+++++||++||+||||||||||+++|+|+++ |+ +|+ .++|... ....
T Consensus 70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 3567899998744 7799999999999999999999999999999999986 64 898 4666422 1234
Q ss_pred eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCC----cHHHHHHHHHhhcCCC-------CCCCCCCCccccchhhhh
Q 025256 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~----~~~~~~~~l~~l~l~~-------~~~~~~lS~G~~qrv~~a 220 (255)
+. +.++..... .+++.|+..+.... ..+... ....+.++++.+++.. +.....||||||||+++|
T Consensus 143 ~y-v~Q~~~l~~--~lTV~E~l~~~a~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 143 GF-VTQDDILYP--HLTVRETLVFCSLL-RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred EE-ECcccccCC--cCCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence 44 666654332 36888877664322 222211 2234577888888753 234668999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+.+|+++|+||||++||...+.++.+++.+
T Consensus 219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~ 251 (659)
T PLN03211 219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGS 251 (659)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 294
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=4.3e-27 Score=232.64 Aligned_cols=165 Identities=17% Similarity=0.171 Sum_probs=122.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
-.++++||.++|+..+ .+.+|+++||.|++|+.++|+|||||||||++++|.+++. |++|+ .++|...
T Consensus 349 g~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~ 424 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKW 424 (1228)
T ss_pred cceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHH
Confidence 3599999999999864 4557899999999999999999999999999999999998 99998 4666332
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHH---------hhcCCCC----CCCCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~----~~~~~lS~G~ 213 (255)
+...|. |.+...... .++.||+.+ |-+. ...+...+..+ .+-.+.+ ....+|||||
T Consensus 425 lr~~igl-V~QePvlF~---~tI~eNI~~-----G~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQ 494 (1228)
T KOG0055|consen 425 LRSQIGL-VSQEPVLFA---TTIRENIRY-----GKPD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQ 494 (1228)
T ss_pred HHhhcCe-eeechhhhc---ccHHHHHhc-----CCCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHH
Confidence 344555 566553222 354444432 3222 22222322222 2222222 2344799999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||++|||||+.+|+||||||||++||+++.+.+.+.||..
T Consensus 495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 495 KQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999863
No 295
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=3.3e-27 Score=222.63 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=122.5
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++|+++ . +++++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999984 1 5799999999999999999999999999999999997 99999 46553211
Q ss_pred ---CCeeEEEecCCC-CCcCccCCcccChHHHHH-hc----C-CCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccc
Q 025256 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~-~~----g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q 215 (255)
...+. ++++.. ......+++.++..+... .. + .........+.++++.+++. .+.++..|||||+|
T Consensus 324 ~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 324 GLANGIVY-ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred HHHCCCEE-ecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence 12444 555531 011122456555543211 01 1 11111123467888888883 46677899999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 440 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 296
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=3e-27 Score=193.74 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=91.4
Q ss_pred ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCC
Q 025256 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (255)
Q Consensus 81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~ 160 (255)
.||+|.|++.. ++++ +|++++|++++|+||||||||||+|+|+|+++ |++|+ |.+++.
T Consensus 4 ~~l~~~~~~~~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~--------------i~~~g~ 61 (177)
T cd03222 4 PDCVKRYGVFF----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDN--------------DEWDGI 61 (177)
T ss_pred CCeEEEECCEE----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcE--------------EEECCE
Confidence 58899998743 5677 48999999999999999999999999999995 55554 344432
Q ss_pred CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256 161 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 161 ~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD 240 (255)
.+.. .++... ||+||+||+++|++++.+|+++|+||||++||
T Consensus 62 ~i~~-----------------~~q~~~---------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 62 TPVY-----------------KPQYID---------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred EEEE-----------------EcccCC---------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 1100 011100 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 025256 241 GGVWKDVSSMFDE 253 (255)
Q Consensus 241 ~~~~~~l~~ll~~ 253 (255)
+..++.+.+++.+
T Consensus 104 ~~~~~~l~~~l~~ 116 (177)
T cd03222 104 IEQRLNAARAIRR 116 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 297
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=6.6e-27 Score=201.55 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=104.1
Q ss_pred ccccceec-----CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEEecCCCCCcCccCCcc
Q 025256 97 TSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (255)
Q Consensus 97 l~~vsl~i-----~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i~~d~~~~~~~~l~~~ 170 (255)
+.+++|++ ++|++++|+||||||||||+++|+|+++ |++|++ +++. ..+. +.++.... ...++.
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~-~~q~~~~~--~~~tv~ 79 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSY-KPQYIKAD--YEGTVR 79 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEE-ecccccCC--CCCCHH
Confidence 35555555 5799999999999999999999999997 999984 4442 2233 33332211 124555
Q ss_pred cChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 171 e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~ 248 (255)
++........+ .......++++.+++. .+..+..||+||+||+++|++|+.+|+++|+||||++||+..+..+.
T Consensus 80 e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~ 155 (246)
T cd03237 80 DLLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155 (246)
T ss_pred HHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 54432211111 1122345677777775 35677899999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 025256 249 SMFDEK 254 (255)
Q Consensus 249 ~ll~~~ 254 (255)
++|.+.
T Consensus 156 ~~l~~~ 161 (246)
T cd03237 156 KVIRRF 161 (246)
T ss_pred HHHHHH
Confidence 988763
No 298
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.6e-27 Score=222.35 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=120.6
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
+.+++++++.. . +++++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .++++...
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 46889999732 2 6799999999999999999999999999999999997 99999 45553211
Q ss_pred ---CCeeEEEecCCC-CCcCccCCcccChHHHHHhc----CC--CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccc
Q 025256 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (255)
Q Consensus 149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~----g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q 215 (255)
...+. ++++.. ......+++.++........ ++ ..........++++.+++. .+.++..|||||+|
T Consensus 325 ~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 325 AIRAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHhCCCEE-cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 12333 444321 00111245555443211111 10 1111123467888888873 46677899999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|++++.+|++||+||||++||+.+++++.++|.+
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 441 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE 441 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865
No 299
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=3.8e-27 Score=189.64 Aligned_cols=177 Identities=15% Similarity=0.123 Sum_probs=131.1
Q ss_pred cceEEEccceeecccc-----ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-
Q 025256 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~-----~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~- 147 (255)
|++++++|++|.|... .+.+.+++.|||++++|+.++|+|.||||||||.|+|+|.+. |++|+ .+++...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 6789999999998642 124558899999999999999999999999999999999998 99999 4666422
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchh
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv 217 (255)
+.....+|++|...-.++.+.+-.-.+...+. -.+..+.....+.+.+..+++. .+.++..+|-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 33445567777654333222222111111111 1121222334556677777775 5678889999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++||||+.+|+|||.||..++||...+-++.+++-+.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeL 195 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887653
No 300
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.94 E-value=3.4e-27 Score=199.22 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=104.9
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc--cCCCCCCCCeeEEEecCCCCCcCccCCcccCh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~--~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~ 173 (255)
+++|+||+|++|++++|+||||||||||+|+|+|+++ |++|++ +++... . +..... ..+.+++.++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~--~----~~~~~~--l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL--P----LGANSF--ILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee--c----cccccc--cCCcCcHHHHH
Confidence 5799999999999999999999999999999999997 999984 343211 0 111111 12235777777
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll 251 (255)
.......+... ......+.+.+++. .+..+..||+||+||+++|++++.+|+++|+|||++++|+..++.+.+++
T Consensus 71 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l 147 (213)
T PRK15177 71 RMMASLYGLDG---DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL 147 (213)
T ss_pred HHHHHHcCCCH---HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 66544444321 11112222333333 45677899999999999999999999999999999999999999999876
Q ss_pred H
Q 025256 252 D 252 (255)
Q Consensus 252 ~ 252 (255)
.
T Consensus 148 ~ 148 (213)
T PRK15177 148 A 148 (213)
T ss_pred H
Confidence 4
No 301
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=1.5e-26 Score=226.56 Aligned_cols=162 Identities=20% Similarity=0.143 Sum_probs=123.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..+. +|+|+||+|++|+.++|+||||||||||+|+|+|++. |++|+ .++|...
T Consensus 477 ~I~~~~vsf~y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLEPP--LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCCCC--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 58999999999863222 6799999999999999999999999999999999998 99999 4666321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|+.. +- .+.+.+.+.++++..++. .+. ....||||||
T Consensus 552 r~~i~~-v~Q~~~lf~---gTi~eNi~l-----~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr 621 (710)
T TIGR03796 552 ANSVAM-VDQDIFLFE---GTVRDNLTL-----WD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621 (710)
T ss_pred HhheeE-EecCChhhh---ccHHHHhhC-----CC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence 234454 777766433 244444322 11 224455555555554432 222 2347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+++|+||||++||+.+.+++.+.+.+
T Consensus 622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 302
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=2.7e-26 Score=223.38 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=122.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (255)
++++++||++.|++. . .+++++||+|++|++++|+||||||||||||+|+|+++ |++|++ +++ ....|.
T Consensus 507 ~~L~~~~ls~~y~~~--~-~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~---~~~igy- 576 (718)
T PLN03073 507 PIISFSDASFGYPGG--P-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA---KVRMAV- 576 (718)
T ss_pred ceEEEEeeEEEeCCC--C-eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC---ceeEEE-
Confidence 579999999999642 1 16799999999999999999999999999999999997 999984 332 123444
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++... .++..++....... ..+ ......+.++++.+++. ...++..|||||+||+++|++++.+|++||
T Consensus 577 v~Q~~~~----~l~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 577 FSQHHVD----GLDLSSNPLLYMMR-CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred Eeccccc----cCCcchhHHHHHHH-hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 4543211 12332322211111 111 12345677889998885 356778999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||||++||+.+++.+.+.+..
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~ 672 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVL 672 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887754
No 303
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=6.9e-27 Score=223.75 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=124.3
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
..++++||++.|++..+. +|+|+||++++|++++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 337 ~~i~~~~v~f~y~~~~~~--il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~ 411 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQP--VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA 411 (574)
T ss_pred CeEEEEEEEEECCCCCCc--ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence 359999999999753222 6799999999999999999999999999999999998 99999 4666321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--------CC----CCCCCCcccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--------SV----YAPSFDHGVG 214 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--------~~----~~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|+.. +.+ +.+.+.+.++++..++.. +. ....|||||+
T Consensus 412 ~r~~i~~-v~Q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 412 LRQAISV-VSQRVHLFS---ATLRDNLLL-----AAP-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHhheeE-Ecccchhhc---ccHHHHhhc-----CCC-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence 122344 676665332 244443322 222 245566677777766542 11 2347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+.
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 304
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=1e-26 Score=227.48 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=121.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++. +. +|+|+||+|++|+.++|+||||||||||+++|+|++. |++|+ .++|...
T Consensus 473 ~I~~~~vsf~y~~~-~~--iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYG-SN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCC-Cc--ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 58999999999742 22 6799999999999999999999999999999999998 99999 4666321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|+.. +.....+.+.+.++++..++ +.+. ....||||||
T Consensus 547 r~~i~~-v~Q~~~lf~---gTI~eNi~l-----~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 547 RQFINY-LPQEPYIFS---GSILENLLL-----GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred HHheEE-EecCceehh---HHHHHHHhc-----cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 223454 777776433 244444432 21122344455555554433 2222 2347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888764
No 305
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=1.1e-26 Score=219.51 Aligned_cols=164 Identities=19% Similarity=0.183 Sum_probs=118.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++|+++ . +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 267 ~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 267 PVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred ceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999983 1 4699999999999999999999999999999999997 99999 45553211
Q ss_pred ---CCeeEEEecCCC--CCcCccCCcccChHHHH-HhcCC--CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchh
Q 025256 149 ---PDVATVLPMDGF--HLYLSQLDAMEDPKEAH-ARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 149 ---~~~g~~i~~d~~--~~~~~~l~~~e~~~~~~-~~~g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv 217 (255)
...+. ++++.. .++ ..+++.++..... ..... ........+.++++.+++. .+.++..||+||+||+
T Consensus 335 ~~~~~i~~-v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 335 RLARGLVY-LPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHhCCcEE-CCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 12233 443311 111 1234444332110 00111 1111223456788888874 3567789999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 448 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.94 E-value=2.3e-26 Score=204.12 Aligned_cols=177 Identities=17% Similarity=0.211 Sum_probs=139.7
Q ss_pred ccceEEEccceeecccc-------ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC
Q 025256 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~-------~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~ 145 (255)
..+++++++|...|.-. ...+.+++++||++++|+.+||+|.||||||||-+.|.+++ +..|+ .|+|+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCc
Confidence 34689999999998532 12366889999999999999999999999999999999999 67799 57774
Q ss_pred CCC----------CCeeEEEecCCCCCcCccCCcccChHHHHHhcC--CCCCCcHHHHHHHHHhhcCC---CCCCCCCCC
Q 025256 146 VKP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (255)
Q Consensus 146 ~~~----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g--~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS 210 (255)
... ...-.++++|.|--..+.+++.+-+.+.....+ .........+.+.++.+++. .+.|+.+||
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFS 428 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFS 428 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccC
Confidence 321 122345888888666666666555554443333 12233445678888899987 578999999
Q ss_pred ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+||++||||++.+|+++++||||+.||...+.++.+++...
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L 472 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998653
No 307
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.94 E-value=1.7e-26 Score=219.13 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=122.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||++.|++..+. +++|+||++++|+.++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 320 ~i~~~~v~f~y~~~~~~--il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCCcc--cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 58999999999763222 6799999999999999999999999999999999998 99999 4665321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (255)
+...+. ++++.+... .+..+|... +.+ ....+...++++..++. .+. ....|||||+
T Consensus 395 r~~i~~-v~Q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~ 464 (529)
T TIGR02857 395 RDQIAW-VPQHPFLFA---GTIAENIRL-----ARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQA 464 (529)
T ss_pred HhheEE-EcCCCcccC---cCHHHHHhc-----cCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHH
Confidence 123444 677765432 355444432 112 22334455555554432 222 3457999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 308
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.94 E-value=1.6e-26 Score=196.35 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=106.6
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCeeEEEecCCCCCcCccCCcccChHHHH
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~ 177 (255)
|++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....+. +.++........+++.++..+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGY-VPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEE-ecccccccCCCCccHHHHHHhcc
Confidence 5789999999999999999999999999997 99999 5666432 123343 45443221111134444433211
Q ss_pred Hh-cCC---CCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256 178 AR-RGA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 178 ~~-~g~---~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll 251 (255)
.. .+. ........+.++++.+++.. +..+..||+||+||+++|++++.+|+++|+||||++||+.+++.+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 10 011 11112234667788888763 5567799999999999999999999999999999999999999999998
Q ss_pred Hh
Q 025256 252 DE 253 (255)
Q Consensus 252 ~~ 253 (255)
.+
T Consensus 157 ~~ 158 (223)
T TIGR03771 157 IE 158 (223)
T ss_pred HH
Confidence 75
No 309
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=2.4e-26 Score=220.80 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=122.4
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++|+++.|++. +. +|+|+||++++|+.++|+|+||||||||+++|+|++. |++|+ .+++...
T Consensus 340 ~i~~~~v~f~y~~~-~~--il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NL--VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCC-Cc--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 48999999999752 22 6799999999999999999999999999999999998 99999 4666322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|+.. ....+.+.+.++++.+++. .+. ....|||||+
T Consensus 414 ~~~i~~-v~Q~~~lF~---~Ti~~NI~~-------~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 414 RQGVAM-VQQDPVVLA---DTFLANVTL-------GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred HhheEE-EccCCcccc---chHHHHHHh-------CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 223344 777765433 244444433 1234455566666655532 222 2347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988865
No 310
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=3.3e-26 Score=219.67 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=120.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-++++||++.|.+. +. +|+|+||++++|+.++|+||||||||||+++|+|++ |++|+ .+++...
T Consensus 349 ~i~~~~vsf~~~~~-~~--vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 349 TIEAEDLEILSPDG-KT--LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW 421 (588)
T ss_pred eEEEEeeEEeccCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence 48999999766432 22 679999999999999999999999999999999998 88999 4666322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCC----CCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~ 214 (255)
+...+ +++++.+... -+..+|+.+ +. .+.+.+.+.++++..++ +.+.. ...||||||
T Consensus 422 r~~i~-~v~Q~~~LF~---~TI~eNI~~-----g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 422 RKHLS-WVGQNPQLPH---GTLRDNVLL-----GN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HhheE-EecCCCcCCC---cCHHHHhhc-----CC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 12344 4788776543 255554433 21 23445555555554432 33332 347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+|+|+||||++||..+.+.+.+.+.+
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765
No 311
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.94 E-value=1.8e-26 Score=219.76 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=116.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||++.|++. +. +|+|+||++++|+.++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 322 ~i~~~~v~f~y~~~-~~--~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDN-GF--SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCC-Ce--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 58999999999742 12 6799999999999999999999999999999999997 89998 4555321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCC-------CCCCCccccchhhhh
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY-------APSFDHGVGDPVEDD 220 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~-------~~~lS~G~~qrv~~a 220 (255)
+...+. +.++.+... .+..++ + ...+.+...++++.++++.... ...|||||+||+++|
T Consensus 396 ~~~i~~-v~q~~~lf~---~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 396 RKLFSA-VFTDFHLFD---QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALL 461 (547)
T ss_pred hhheEE-EecChhHHH---Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHH
Confidence 122333 555543221 122221 1 1233445566777776653321 347999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~ 252 (255)
|+++.+|+++|+||||++||+.+.+.+.+.+.
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998887764
No 312
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=1.8e-26 Score=223.73 Aligned_cols=165 Identities=12% Similarity=0.022 Sum_probs=121.3
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (255)
.+++++||++.|++. +. +++++||++++|++++|+||||||||||+++|+|+++ |++|++ +++ +...+.
T Consensus 450 ~~i~~~nv~~~~~~~-~~--il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~- 519 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-DV--LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY- 519 (659)
T ss_pred CeEEEEeeEEECCCC-Ce--eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE-
Confidence 469999999999642 12 6799999999999999999999999999999999987 888884 332 223444
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCC-----------CCCCCCccccchhhhhhh
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSV-----------YAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~-----------~~~~lS~G~~qrv~~a~~ 222 (255)
+.++.+... .++.++..+.....+. ......+...++++.+++.... ....|||||+||+++||+
T Consensus 520 v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 666654222 2555544321111111 1122345566777777764211 235899999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+|+++|+||||++||+...+.+.+++.+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 313
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.94 E-value=2.2e-26 Score=220.02 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=122.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-++++||+++|++..+. +|+++||++++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 330 ~i~~~~v~f~y~~~~~~--il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRP--ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCCCc--cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 58999999999753222 6799999999999999999999999999999999998 99999 4665321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|+.. +.+.+.+.+.+.++++.+++. .+.. ...||||||
T Consensus 405 ~~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 405 RRQVAL-VSQDVVLFN---DTIANNIAY-----GRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HhhceE-EccCccccc---ccHHHHHhc-----CCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 122343 677765432 233333321 112245556666666655442 2222 236999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.|..
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988865
No 314
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.93 E-value=3.9e-26 Score=223.03 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=121.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..+. +|+|+||+|++|+.++|+|+||||||||+|+|+|++. |++|+ .+++...
T Consensus 463 ~I~~~~vsf~Y~~~~~~--vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCCCcc--ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 58999999999753222 6799999999999999999999999999999999998 99999 4665321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|+.. +-+ +.+.+.+.++++..++ +.+. ....||||||
T Consensus 538 r~~i~~-v~Q~~~lf~---~TI~eNi~~-----~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 538 RRNIGY-VPQDPRLFY---GTLRDNIAL-----GAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred HhccEE-ECCChhhhh---hhHHHHHhC-----CCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 223444 677665432 244444322 111 2345555555555443 2222 2347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+++.+.+.+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 315
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=5.4e-26 Score=213.39 Aligned_cols=165 Identities=15% Similarity=0.059 Sum_probs=119.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
|.+|+++++++.|++.. ++++++|++.+|+.|||+|+||||||||||+|+|.+. |++|++ ..+. ...+.
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence 56899999999998855 6799999999999999999999999999999999997 999984 3321 12333
Q ss_pred EEecCCCCCcCccCCcccChHH-------HH----------------------HhcC-CCCCCcHHHHHHHHHhhcCCC-
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKE-------AH----------------------ARRG-APWTFNPLLLLNCLKNLRNQG- 202 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~-------~~----------------------~~~g-~~~~~~~~~~~~~l~~l~l~~- 202 (255)
+.++..... ..++.+.... .. ..+. +...........++..+++..
T Consensus 71 -l~Q~~~~~~--~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 71 -LSQEPPLDP--EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred -eCCCCCcCC--CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 444433211 1122111100 00 0000 000011234456666677765
Q ss_pred CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 203 ~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~ 252 (255)
+..+..||||||.||++|++|..+||+|+|||||+.||.++..-+-+.|.
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~ 197 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK 197 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999988888774
No 316
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=6.5e-26 Score=217.67 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=120.4
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||++.|++. +. +|+|+||++++|++++|+|+||||||||+|+|+|++. |++|+ .+++...
T Consensus 334 ~I~~~~vsf~y~~~-~~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCC-Cc--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 58999999999752 22 6799999999999999999999999999999999998 99999 4666321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|... +.+ +...+...++++.+++ +.+. ....|||||+
T Consensus 408 r~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 408 RRNIAV-VFQDAGLFN---RSIEDNIRV-----GRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred HhheEE-EecCccccc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 123343 777765432 244444322 112 2334445555554432 2222 2346999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 317
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=5.3e-26 Score=216.45 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=117.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++|+++.|++..+. +++++||++++|+.++|+||||||||||+++|+|++. |++|+ .+++...
T Consensus 316 ~i~~~~v~~~y~~~~~~--~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKP--TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCCcc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 58999999999652222 6799999999999999999999999999999999998 99999 4665321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHH---------HHhhcCCCC----CCCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---------l~~l~l~~~----~~~~~lS~G~~ 214 (255)
+...+. ++++.+... -+..+|... + ......+.+.+. ++.+..+.+ .....|||||+
T Consensus 391 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~-~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~ 460 (544)
T TIGR01842 391 GKHIGY-LPQDVELFP---GTVAENIAR-----F-GENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460 (544)
T ss_pred hhheEE-ecCCccccc---ccHHHHHhc-----c-CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence 112333 666654322 244343321 1 112233333333 333322222 23457999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+...+++.+.+.+
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 499 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKA 499 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988864
No 318
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.8e-26 Score=183.70 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=97.7
Q ss_pred EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCC
Q 025256 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (255)
Q Consensus 80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~ 159 (255)
++++++.|.+.. +++++||++++|++++|+||||||||||+++|+|++. +..|. +.+++
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~----------------~~~G~-i~~~~ 60 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK----------------PTSGE-ILIDG 60 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----------------CCccE-EEECC
Confidence 578899997643 7799999999999999999999999999999999984 44555 56666
Q ss_pred CCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCC
Q 025256 160 FHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238 (255)
Q Consensus 160 ~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~ 238 (255)
..+.. .. ........++ ++ ||+||+||++++++++.+|+++|+||||++
T Consensus 61 ~~~~~-----~~-~~~~~~~i~~~~q------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 61 KDIAK-----LP-LEELRRRIGYVPQ------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred EEccc-----CC-HHHHHhceEEEee------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 43211 00 1111122222 22 999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHh
Q 025256 239 LDGGVWKDVSSMFDE 253 (255)
Q Consensus 239 LD~~~~~~l~~ll~~ 253 (255)
||..++..+.+++.+
T Consensus 111 lD~~~~~~l~~~l~~ 125 (157)
T cd00267 111 LDPASRERLLELLRE 125 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998865
No 319
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.93 E-value=6.6e-26 Score=221.80 Aligned_cols=160 Identities=17% Similarity=0.141 Sum_probs=119.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
..|+++||++.|++.. ...+|+|+||+|++|+.++|+||||||||||+++|.|+++ |++|+ .++|...
T Consensus 477 ~~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CeEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 3589999999997532 1226799999999999999999999999999999999998 99999 4666321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~ 213 (255)
+...+. ++++.+... -+..+|+.+ +.+ ....+.+.++++..++ +.+. ....|||||
T Consensus 553 lr~~i~~-v~Q~~~lF~---gTIreNI~~-----g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 553 LHRQVAL-VGQEPVLFS---GSVRENIAY-----GLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred HHhhceE-EecCccccc---cCHHHHHhc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 223444 777776433 244444422 222 2334555555555443 2222 234799999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ 249 (255)
|||+++||+++.+|+|+|+||||++||+...+.+.+
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 999999999999999999999999999999888877
No 320
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.93 E-value=6.3e-26 Score=217.56 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=117.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||++.|++.. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 334 ~i~~~~v~~~y~~~~-~--~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANSS-Q--GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCCC-c--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 589999999997521 2 5799999999999999999999999999999999998 99999 4665321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc---------CCC----CCCCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~----~~~~~~lS~G~~ 214 (255)
+...+. +.++.+... .+..+|... +.+. ...+...+.++..+ .+. ......|||||+
T Consensus 408 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 408 RKSIAT-VFQDAGLFN---RSIRENIRL-----GREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred HhheEE-EccCCccCc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 122343 666655332 244444322 2121 22333333333221 111 223457999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 321
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=8.2e-26 Score=200.65 Aligned_cols=176 Identities=15% Similarity=0.187 Sum_probs=136.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC------Ccc-ccCCCC-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ------KAS-SFDSQV- 146 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~------~G~-~~~~~~- 146 (255)
+++++++|++..|+.....+.++++|||+|++||.++|+|.||||||-.++.+++++ |. +|+ .|+|..
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL----p~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL----PSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc----CCCcccCccceeEEcChhh
Confidence 578999999999986555566889999999999999999999999999999999999 65 344 355532
Q ss_pred ----------CCCCeeEEEecCCCCCcCccCCcccC-hHHHHHhcCCCCCCcHHHHHHHHHhhcCC-----CCCCCCCCC
Q 025256 147 ----------KPPDVATVLPMDGFHLYLSQLDAMED-PKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFD 210 (255)
Q Consensus 147 ----------~~~~~g~~i~~d~~~~~~~~l~~~e~-~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS 210 (255)
.+.....+|++....-.++-.+.... .+......++..........++++.+++. .+.++.+||
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 13334445666654322211121111 12233345666666677889999999986 467889999
Q ss_pred ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+|||.||.||+.+|++||.||||..||...+.+|.++|.+.
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L 203 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL 203 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999764
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=1.1e-25 Score=197.39 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=106.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
.+.|+++|+++. +.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|++ +++ ..+.
T Consensus 37 ~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~y 102 (282)
T cd03291 37 DNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RISF 102 (282)
T ss_pred CCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEEE
Confidence 357999999985 222 6799999999999999999999999999999999997 899983 443 2333
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CC----CCCCCCCCccccchhhhh
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~----~~~~~~lS~G~~qrv~~a 220 (255)
+.++... +. .++.++..+ +.. .........++.+++ .. ...+..||+||+||+++|
T Consensus 103 -v~q~~~l-~~--~tv~enl~~-----~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA 171 (282)
T cd03291 103 -SSQFSWI-MP--GTIKENIIF-----GVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171 (282)
T ss_pred -EeCcccc-cc--cCHHHHhhc-----ccc--cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence 4444322 21 233333221 110 111111222222221 11 123468999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll 251 (255)
++++.+|+++|+||||++||+..++.+.+.+
T Consensus 172 raL~~~p~iLiLDEPt~gLD~~~~~~l~~~l 202 (282)
T cd03291 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202 (282)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999888753
No 323
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-25 Score=206.17 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=119.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC---CC---
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP--- 149 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~---~~--- 149 (255)
.++++||+++|++.. ..+|+|+||++++||.++|+|++|||||||++.|+|.+. |++|++ +++... ++
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 689999999999843 336799999999999999999999999999999999997 888883 444211 11
Q ss_pred -CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CC----CCCCCCCccccc
Q 025256 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVGD 215 (255)
Q Consensus 150 -~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~lS~G~~q 215 (255)
+...++.+..+. +. -+..+|.. ...+ +...+.+.++++.+++. .+ -....|||||+|
T Consensus 411 ~e~i~vl~Qr~hl-F~--~Tlr~NL~-----lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 411 RETISVLTQRVHL-FS--GTLRDNLR-----LANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHhhhccchHH-HH--HHHHHHHh-----hcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 011112222211 11 12222221 1223 34556777777777764 11 223489999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++||+++++++++|+||||.|||+...+++++++.+.
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999764
No 324
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=7.7e-26 Score=195.84 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=109.3
Q ss_pred ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------------cCCCCCC
Q 025256 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP 148 (255)
Q Consensus 81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~------------~~~~~~~ 148 (255)
.+|+++|+... .+++++++ +++|++++|+||||||||||+++|+|+++ |++|++ +++....
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 47899997531 26799995 99999999999999999999999999997 899985 2222110
Q ss_pred C--------C--eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccch
Q 025256 149 P--------D--VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP 216 (255)
Q Consensus 149 ~--------~--~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qr 216 (255)
. . .+. +.+. ..... ....++... . +..........++++.+++.. +..+..||+||+||
T Consensus 77 ~~~~~~~~~~~~i~~-~~~~-~~~~~--~~~~~~i~~---~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 147 (255)
T cd03236 77 NYFTKLLEGDVKVIV-KPQY-VDLIP--KAVKGKVGE---L--LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR 147 (255)
T ss_pred hhhHHhhhcccceee-ecch-hccCc--hHHHHHHHH---H--hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 0 0 010 1000 00000 001111111 0 111112345677888887753 45667999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus 148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~ 184 (255)
T cd03236 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE 184 (255)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=7.4e-26 Score=215.88 Aligned_cols=160 Identities=14% Similarity=0.002 Sum_probs=115.8
Q ss_pred ceEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
..++++||++.|++... ...+|+++||++++|++++|+||||||||||+++|+|++. |++|+ .++|....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 35899999999975311 1226799999999999999999999999999999999997 89998 45553221
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCC--------CCCCCCccccchh
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV--------YAPSFDHGVGDPV 217 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~--------~~~~lS~G~~qrv 217 (255)
...+. +.++.+.... +..+|. ......+...++++.+++.... ....||||||||+
T Consensus 413 ~~~~~i~~-v~q~~~lf~~---ti~~n~---------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSA-IFADFHLFDD---LIGPDE---------GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcE-EccChhhhhh---hhhccc---------ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 11232 4444432211 222211 1122344556677777665321 1257999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll 251 (255)
++||+++.+|+++|+||||++||+.+.+++.+.+
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999987643
No 326
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.6e-26 Score=206.58 Aligned_cols=160 Identities=15% Similarity=0.144 Sum_probs=123.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|+++. + +|+++||+|++||.|||+|+|||||||++|+|.++. .++|+ .++|...
T Consensus 351 ~I~F~dV~f~y~~k~-~--iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR-K--VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC-c--eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence 499999999998742 3 559999999999999999999999999999999999 79999 5777432
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CC----CCCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~lS~G~~ 214 (255)
+...|. ++||...... ++..|+ .+|.+.. ..+.+.+..++.++. .. .+...+|||||
T Consensus 424 R~~Ig~-VPQd~~LFnd---TIl~NI-----~YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek 493 (591)
T KOG0057|consen 424 RQSIGV-VPQDSVLFND---TILYNI-----KYGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK 493 (591)
T ss_pred hhheeE-eCCcccccch---hHHHHh-----hcCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence 334554 7888764432 433333 3454433 345555666665543 11 23447999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|+++.+|+|+++||||+.||.++.+++.+.+-.
T Consensus 494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999888754
No 327
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-25 Score=207.11 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=121.5
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC-------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP------- 149 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~------- 149 (255)
++.+|+++.|++.. .++.++||++++|+.++|+|+||||||||++.|+|+++ |+.|+ .+++.....
T Consensus 321 i~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 321 ISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred eeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence 55669999998752 27799999999999999999999999999999999997 89999 566533211
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--------CCCCCC----CCCccccchh
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSVYAP----SFDHGVGDPV 217 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--------~~~~~~----~lS~G~~qrv 217 (255)
+....++++++.... +..+|+.. + ..+...+...++++..++. .+..+. .+||||+||+
T Consensus 395 k~i~~v~Q~p~lf~g---TireNi~l-----~-~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 395 KQISWVSQNPYLFAG---TIRENILL-----A-RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred hHeeeeCCCCccccc---cHHHHhhc-----c-CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 122336777664432 43343322 1 1224456666777766553 233333 4999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|||+..+++++|+||||++||.++.+.+.+.+.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~ 501 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHH
Confidence 999999999999999999999999999999988865
No 328
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.93 E-value=1.9e-25 Score=213.83 Aligned_cols=164 Identities=20% Similarity=0.196 Sum_probs=120.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
..++++||++.|+...+ ..+|+++||++++||.++|+|+||||||||+|+|+|++. |++|+ .+++...
T Consensus 336 ~~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred ceEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 35899999999975211 126799999999999999999999999999999999998 99999 4665221
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~ 213 (255)
+...+. ++++.+... -+..+|... +.+ +.+.+...++++.+++ +.+. ....|||||
T Consensus 412 ~~~~i~~-~~Q~~~lf~---~Ti~~Ni~~-----~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq 481 (576)
T TIGR02204 412 LRARMAL-VPQDPVLFA---ASVMENIRY-----GRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481 (576)
T ss_pred HHHhceE-EccCCcccc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence 123344 677665433 244443322 222 2334555555555443 2222 234799999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++||+++.+|+++|+||||++||+...+.+.+.+..
T Consensus 482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
No 329
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=2.2e-25 Score=213.26 Aligned_cols=162 Identities=14% Similarity=0.178 Sum_probs=119.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++++++.|+...+ .+|+++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++...
T Consensus 313 ~I~~~~v~~~y~~~~~--~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTDH--PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCCC--ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 4899999999975322 26799999999999999999999999999999999998 99999 4665321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CC----CCCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~lS~G~~ 214 (255)
+...+. +.++.+... -+..+|+.. +.+ ....+....+++..++. .+ .....|||||+
T Consensus 388 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~ 457 (569)
T PRK10789 388 RSRLAV-VSQTPFLFS---DTVANNIAL-----GRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457 (569)
T ss_pred HhheEE-EccCCeecc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 122343 566554322 244443322 212 23344444555543321 11 23357999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+...+.+.+.+..
T Consensus 458 qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~ 496 (569)
T PRK10789 458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496 (569)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 330
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=1.9e-25 Score=218.20 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=120.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++..+. +|+++||++++|+.++|+|+||||||||+|+|+|++. |++|+ .++|...
T Consensus 455 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDSPE--VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 58999999999753222 6799999999999999999999999999999999998 99999 4666322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCC----CCCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~----~~~~~lS~G~~ 214 (255)
+...+. +.++.+... -+..+|... +.+ ....+.+.++++..++ +.+ .....|||||+
T Consensus 530 r~~i~~-v~q~~~lf~---~ti~eNi~~-----~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 599 (694)
T TIGR01846 530 RRQMGV-VLQENVLFS---RSIRDNIAL-----CNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599 (694)
T ss_pred HHhCeE-EccCCeehh---hhHHHHHhc-----CCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence 123344 666655433 244443322 112 2334444444444332 222 22457999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||+++.+|+++|+||||++||+.+.+++.+.+.+
T Consensus 600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 331
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.93 E-value=1.9e-26 Score=220.41 Aligned_cols=160 Identities=17% Similarity=0.171 Sum_probs=120.2
Q ss_pred eEEEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
-|+++||++.|++ .. +++|+||++++|+.+||+||||||||||++.|.+++. |++|+ .+||...
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 4999999999984 33 6799999999999999999999999999999999998 89999 4666321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHH---------hhcCCCCCC----CCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~~~----~~~lS~G~ 213 (255)
+...+ ++++|.+... -++.+|+.+ |.++ ...+.+.+.++ ++-.+.+.. ...|||||
T Consensus 401 lr~~I~-~V~Qd~~LF~---~TI~~NI~~-----g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQ 470 (567)
T COG1132 401 LRKRIG-IVSQDPLLFS---GTIRENIAL-----GRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470 (567)
T ss_pred HHHhcc-EEcccceeec---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHH
Confidence 33455 4777765433 244444433 2222 23334433333 332123333 34799999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|||++.+|+++||||||+.+|..+.+.+.+.+..
T Consensus 471 rQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~ 510 (567)
T COG1132 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK 510 (567)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999988863
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.6e-26 Score=192.24 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=124.5
Q ss_pred cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC------------CC
Q 025256 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------------KP 148 (255)
Q Consensus 82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~------------~~ 148 (255)
|+.+.+++.. -+++|+.+...+++|.|+||||||||+|+|+|+++ |+.|. .+++.. .+
T Consensus 5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 5566666643 67899998878999999999999999999999998 99999 455532 13
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~ 226 (255)
...|+ +++|...++ ++++..|..+.... .....+..+.+.++++ .+.++..||||+||||+|+|||+..
T Consensus 76 RriGY-VFQDARLFp--H~tVrgNL~YG~~~------~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~ 146 (352)
T COG4148 76 RRIGY-VFQDARLFP--HYTVRGNLRYGMWK------SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred heeee-Eeecccccc--ceEEecchhhhhcc------cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence 34666 777776433 37887777654322 1455677888888887 6788899999999999999999999
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 227 ~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++|++|||.+.||.+-+++++-+++.
T Consensus 147 P~LLLmDEPLaSLD~~RK~EilpylER 173 (352)
T COG4148 147 PELLLMDEPLASLDLPRKREILPYLER 173 (352)
T ss_pred CCeeeecCchhhcccchhhHHHHHHHH
Confidence 999999999999999999999988865
No 333
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=1.7e-25 Score=231.16 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=130.3
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCC
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPD 150 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~ 150 (255)
.+++++||++.|+.......+|+|||+++++|++++|+|||||||||||++|+|++....|++|+ .++|... +..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 36899999999963212223679999999999999999999999999999999998422357798 4666432 223
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC----CcHHHHHHHHHhhcCCC--CCCCC----CCCccccchhhhh
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG--SVYAP----SFDHGVGDPVEDD 220 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~----~~~~~~~~~l~~l~l~~--~~~~~----~lS~G~~qrv~~a 220 (255)
.+. +.+++.... .+++.|+..+..... .+.. .....+.++++.+++.. +..+. .||+|||||+++|
T Consensus 838 i~y-v~Q~~~~~~--~~Tv~E~L~~~a~l~-~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 838 IGY-VQQQDLHLP--TSTVRESLRFSAYLR-QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG 913 (1394)
T ss_pred eee-ecccccCCC--CCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHH
Confidence 444 666554332 378888877654332 1211 12234678888888753 34443 6999999999999
Q ss_pred hhhccCCc-EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 221 ILVGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 221 ~~l~~~~~-ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+.+|+ +|++||||++||......+.++|.+.
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 99999997 99999999999999999999998763
No 334
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=5.3e-26 Score=184.55 Aligned_cols=168 Identities=16% Similarity=0.209 Sum_probs=127.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
+++++++|+.+|++.. |++++||++.+||.-+|+|||||||||++..|.|-.+ |+.|+ .+++...
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 5799999999999987 9999999999999999999999999999999999997 88888 4555221
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CC-------CCCCcHHHHHHHHHhhcCCCC--CCCCCCCcccc
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-------PWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVG 214 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~-------~~~~~~~~~~~~l~~l~l~~~--~~~~~lS~G~~ 214 (255)
+...|.-+..... ...+++.+|.+...... .+ ..........++|+.+++... .....||+|||
T Consensus 77 ~IAr~GIGRKFQ~PtV---fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 77 RIARAGIGRKFQKPTV---FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred HHHHhccCccccCCee---hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 1112221111111 12367777776543221 11 122233467788888888754 45568999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|++.|+..++.+|++|++|||++|+-....++..++|..
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~ 192 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888888764
No 335
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=2.7e-25 Score=216.42 Aligned_cols=161 Identities=13% Similarity=0.041 Sum_probs=111.3
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCee
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVA 152 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g 152 (255)
.+.+|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||||+|+|.....+|+.|++ +..+...
T Consensus 174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~---- 245 (718)
T PLN03073 174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV---- 245 (718)
T ss_pred CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC----
Confidence 356899999999998643 6799999999999999999999999999999999641012555552 1111000
Q ss_pred EEEecCCCCCcCccCCccc--------------------------------------------------ChHHHHHhcCC
Q 025256 153 TVLPMDGFHLYLSQLDAME--------------------------------------------------DPKEAHARRGA 182 (255)
Q Consensus 153 ~~i~~d~~~~~~~~l~~~e--------------------------------------------------~~~~~~~~~g~ 182 (255)
+ ...+..+ ........++.
T Consensus 246 ------g-----~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 314 (718)
T PLN03073 246 ------G-----DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLEL 314 (718)
T ss_pred ------C-----CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHh
Confidence 0 0001000 00000011111
Q ss_pred CCC-CcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 183 PWT-FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 183 ~~~-~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
... .....+..+++.+++. .+..+..|||||+||+++|++|+.+|++|||||||++||+..++.+.++|..
T Consensus 315 ~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 315 IDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred cCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 000 1122344566666664 3556789999999999999999999999999999999999999999998865
No 336
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=3.5e-25 Score=181.36 Aligned_cols=120 Identities=15% Similarity=0.067 Sum_probs=91.3
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+++++||++++|++++|+||||||||||||+|. +++|+ +.+++.. +...
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~--------------v~~~~~~------~~~~---- 58 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGK--------------ARLISFL------PKFS---- 58 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCc--------------EEECCcc------cccc----
Confidence 779999999999999999999999999999874 23343 2222221 0000
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC--CcEEEEeCCCCCCChHHHHHHHHH
Q 025256 176 AHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSM 250 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~--~~ililDEp~~~LD~~~~~~l~~l 250 (255)
.....+..+ .++++.+++. .+.++..||+||+||+++|++++.+ |+++|+|||+++||+..++.+.++
T Consensus 59 -~~~~~~~~q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~ 131 (176)
T cd03238 59 -RNKLIFIDQ------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV 131 (176)
T ss_pred -cccEEEEhH------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 001111100 4677777765 3567789999999999999999999 999999999999999999999998
Q ss_pred HHh
Q 025256 251 FDE 253 (255)
Q Consensus 251 l~~ 253 (255)
+.+
T Consensus 132 l~~ 134 (176)
T cd03238 132 IKG 134 (176)
T ss_pred HHH
Confidence 875
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=4.7e-25 Score=228.34 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=122.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-cc-CCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-DSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~-~~~~~------- 147 (255)
.|+++||++.|+... ...+|+++||+|++|++++|+||||||||||+++|+|++. |++|+ .+ ++...
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 589999999998532 2237799999999999999999999999999999999998 99999 45 33221
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-C--------------------------------------------
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------------------------------------------- 181 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g-------------------------------------------- 181 (255)
+...|. +.++..... .++.+|+.+..... +
T Consensus 458 lr~~Ig~-V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 458 WRSKIGV-VSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHhccE-ecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 122444 666654322 36666655421000 0
Q ss_pred C------CCCCcHHHHHHHHHhhcCC---------C----CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256 182 A------PWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 182 ~------~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~ 242 (255)
. ......+.+.++++.+++. . ......||||||||+++|||++.+|+||||||||++||+.
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 0 0012234455555554432 1 2345689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 025256 243 VWKDVSSMFDE 253 (255)
Q Consensus 243 ~~~~l~~ll~~ 253 (255)
+.+.+.+.|++
T Consensus 614 se~~i~~~L~~ 624 (1466)
T PTZ00265 614 SEYLVQKTINN 624 (1466)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=2.5e-25 Score=212.87 Aligned_cols=156 Identities=14% Similarity=0.087 Sum_probs=111.2
Q ss_pred cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------------cCCCCCC-
Q 025256 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP- 148 (255)
Q Consensus 82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~------------~~~~~~~- 148 (255)
+++++|+.. . .+|++++ .+++|+++||+||||||||||+|+|+|+++ |++|++ ++|....
T Consensus 78 ~~~~~yg~~--~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 78 EPVHRYGVN--G-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred CceEEecCC--c-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence 489999862 1 2679999 899999999999999999999999999997 999984 3332110
Q ss_pred -------CCeeEEEecCCCCCcCccC---CcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccch
Q 025256 149 -------PDVATVLPMDGFHLYLSQL---DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (255)
Q Consensus 149 -------~~~g~~i~~d~~~~~~~~l---~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qr 216 (255)
..... ....++....+.+ ++.++.. . ......+.++++.+++. .+..+..||+||+||
T Consensus 151 ~~~~~~~~~~~~-~~~~q~~~~~p~~~~~tv~e~l~-------~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 151 YFKKLYNGEIKV-VHKPQYVDLIPKVFKGKVRELLK-------K--VDERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred HHHHHhccCcce-eecccchhhhhhhhcchHHHHHH-------h--hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 00000 0000100000000 1111111 0 01224567788888876 467788999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998763
No 339
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=8.9e-25 Score=216.31 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=121.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||++.|+..+ .+.+++|+||+|++|+.+||+|||||||||.+.+|-..+. |+.|. .+|+...
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 389999999999753 5668899999999999999999999999999999999997 88887 4555332
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHH---------hhcCCCCCCC----CCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVYA----PSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~~~~----~~lS~G~~ 214 (255)
+...+. |.+...... -+..||+.+. ... ...+.+.+.++ .|-.+.+..+ .+||||||
T Consensus 1063 R~~i~l-VsQEP~LF~---~TIrENI~YG-----~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1063 RKQIGL-VSQEPVLFN---GTIRENIAYG-----SEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred HHhcce-eccCchhhc---ccHHHHHhcc-----CCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence 223333 454443222 3445544432 111 22333333332 3333444443 38999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||++||||++.+|+||||||-|+.||.++.+.+.+.||..
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999863
No 340
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=5.9e-25 Score=206.39 Aligned_cols=163 Identities=16% Similarity=0.125 Sum_probs=123.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
..+++++|+++.|++. +. +++++||.|.+|+.|||+||||+|||||||+|+|.+. |.+|.+..+. ....|+
T Consensus 319 ~~vl~~~~~~~~y~~~-~~--l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~--~v~igy- 389 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RL--LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGE--TVKIGY- 389 (530)
T ss_pred CeeEEEeccccccCCC-ce--eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCC--ceEEEE-
Confidence 4689999999999764 12 5699999999999999999999999999999999997 8888743322 122343
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++...+. .+.++.+ +.... .+. .....+...+..+++.. ...+..||||||.|+.+|+.+..+|.+||
T Consensus 390 f~Q~~~~l~-~~~t~~d---~l~~~--~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi 462 (530)
T COG0488 390 FDQHRDELD-PDKTVLE---ELSEG--FPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL 462 (530)
T ss_pred EEehhhhcC-ccCcHHH---HHHhh--Ccc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence 444432211 1112222 21111 122 22567788999998873 46777999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||||+.||.++.+.+.+.|..
T Consensus 463 LDEPTNhLDi~s~~aLe~aL~~ 484 (530)
T COG0488 463 LDEPTNHLDIESLEALEEALLD 484 (530)
T ss_pred EcCCCccCCHHHHHHHHHHHHh
Confidence 9999999999999999888753
No 341
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=6.7e-25 Score=227.21 Aligned_cols=163 Identities=14% Similarity=0.090 Sum_probs=113.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-------------------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ------------------- 137 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~------------------- 137 (255)
-|+++||++.|++.. ...+|+|+||+|++|+.+||+||||||||||+++|.|++. |+
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 499999999997532 1226799999999999999999999999999999999997 63
Q ss_pred -----------------------------------Ccc-ccCCCCC--------CCCeeEEEecCCCCCcCccCCcccCh
Q 025256 138 -----------------------------------KAS-SFDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDP 173 (255)
Q Consensus 138 -----------------------------------~G~-~~~~~~~--------~~~~g~~i~~d~~~~~~~~l~~~e~~ 173 (255)
+|+ .++|... +...+. |+++.+... .++.+|+
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~-V~Qep~LF~---gTIreNI 1316 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI-VSQEPMLFN---MSIYENI 1316 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccE-eCCCCcccc---ccHHHHH
Confidence 444 2333111 112222 444433221 2333333
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCC----CCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256 174 KEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD 240 (255)
.+ |.+ +...+.+.++++..++ +.+.. ...||||||||++|||||+.+|+||||||||+.||
T Consensus 1317 ~~-----g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1317 KF-----GKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred hc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 22 212 2333444444444332 22332 34799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 025256 241 GGVWKDVSSMFDE 253 (255)
Q Consensus 241 ~~~~~~l~~ll~~ 253 (255)
..+.+.+.+.|+.
T Consensus 1391 ~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1391 SNSEKLIEKTIVD 1403 (1466)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988865
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-24 Score=179.97 Aligned_cols=171 Identities=19% Similarity=0.147 Sum_probs=120.1
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+++++||...-++. +. +|++|||+|++||+++|+||||||||||.++|+|.-. -.+++|+ .++|+..
T Consensus 1 m~~L~I~dLhv~v~~~-ke--ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 1 MMMLEIKDLHVEVEGK-KE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred CceeEEeeeEEEecCc-hh--hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCHh
Confidence 5689999999999874 12 6799999999999999999999999999999999852 1256777 4666432
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHh----cCCCC--CCcHHHHHHHHHhhcCCC---CCCCC-CCCccccch
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW--TFNPLLLLNCLKNLRNQG---SVYAP-SFDHGVGDP 216 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~----~g~~~--~~~~~~~~~~l~~l~l~~---~~~~~-~lS~G~~qr 216 (255)
+...|..+.++. . ...+...+..+.+.- .+... ......+.+.++.+++.. ++++. -||||+|+|
T Consensus 77 ERAr~GifLafQ~-P---~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR 152 (251)
T COG0396 77 ERARAGIFLAFQY-P---VEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR 152 (251)
T ss_pred HHHhcCCEEeecC-C---ccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence 233443232221 1 113333333443321 11111 011234456777777763 33333 799999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
..++..++.+|++.|||||-+|||..+-+.+.+.+..
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~ 189 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA 189 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887754
No 343
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=5.1e-25 Score=172.19 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=128.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
++.++||+...++.. .|.++||+|.+|||+.|+||||||||||+..+.|.+...+.-+|+ .++++.. +.
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 467889998887754 679999999999999999999999999999999999744555788 4555321 34
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..|. +++|....+ ++++.+|+.+.... .+............++..++. ....+.++|||||.||++-|+|+..|
T Consensus 78 q~Gi-LFQD~lLFp--hlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P 153 (213)
T COG4136 78 QIGI-LFQDALLFP--HLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP 153 (213)
T ss_pred heee-eeccccccc--ccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence 4565 677765433 36777766543211 111122334567788888876 35667799999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHH
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~ 252 (255)
+.+++||||+-||..-+.++++++-
T Consensus 154 k~lLLDEPFS~LD~ALR~qfR~wVF 178 (213)
T COG4136 154 KALLLDEPFSRLDVALRDQFRQWVF 178 (213)
T ss_pred ceeeeCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999888888764
No 344
>PLN03232 ABC transporter C family member; Provisional
Probab=99.91 E-value=2.5e-24 Score=224.18 Aligned_cols=161 Identities=15% Similarity=0.086 Sum_probs=123.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++..+. +|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+ .+||...
T Consensus 1234 ~I~f~nVsf~Y~~~~~~--vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCCCc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 59999999999642112 6799999999999999999999999999999999998 99999 4776322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (255)
+...+. |+++.+... -+..+|+. ...+...+.+.++++..++. .+. ....||+|||
T Consensus 1309 R~~i~i-VpQdp~LF~---gTIr~NL~-------~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1309 RRVLSI-IPQSPVLFS---GTVRFNID-------PFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred HhhcEE-ECCCCeeeC---ccHHHHcC-------CCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 223444 788776433 24444432 22234555566666655432 222 2347999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+|||+||||+.+|..+.+.+.+.+++
T Consensus 1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988875
No 345
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.91 E-value=1.7e-24 Score=215.55 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=143.1
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
....+.+++++|.|+.... |++++++.|++||+.|+.|+|||||||++++|.|..+ |++|+ .+.|...
T Consensus 561 ~~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 561 YSSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTD 634 (885)
T ss_pred ccceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccc
Confidence 3467899999999998542 7799999999999999999999999999999999998 99999 4444222
Q ss_pred ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
....|. .++.+- ....+|..|+.....+..|+++..-...+...++.+++. .+..++.||||+|+|+..|.
T Consensus 635 ~~~~~~~iGy-CPQ~d~--l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 635 FQQVRKQLGY-CPQFDA--LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAI 711 (885)
T ss_pred hhhhhhhccc-CCchhh--hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHH
Confidence 222454 444433 234588899999999999987655555678888988886 56778899999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|++.+|++++||||++|+||..++.+++++.+.
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~ 744 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARL 744 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999764
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=4.5e-24 Score=222.87 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=124.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|.+..+ .+|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+ .+||...
T Consensus 1237 ~I~f~nVsf~Y~~~~~--~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELP--PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCCC--ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 5999999999965321 26799999999999999999999999999999999998 99999 4776322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCC----CCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~ 214 (255)
+...+. |++|.+... -++.+|+.. ..+...+.+.++++..++ +.+.. ...||+|||
T Consensus 1312 R~~Isi-VpQdp~LF~---GTIreNLd~-------~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1312 RKVLGI-IPQAPVLFS---GTVRFNLDP-------FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred HhccEE-ECCCCcccc---ccHHHHhCc-------CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 233444 788876443 244444432 223445556666665443 23322 237999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||||+.+|+||||||+|+.+|..+.+.+.+.|++
T Consensus 1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=7.4e-25 Score=180.37 Aligned_cols=174 Identities=17% Similarity=0.118 Sum_probs=129.2
Q ss_pred eEEEccceeecccc-ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~-~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
|+++.|+.+.|... ...-.+|++++++|.+|+++.|+|.||||||||++.|+|-+. |++|+ .+++..+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 46677888888543 222337799999999999999999999999999999999998 99999 46664321
Q ss_pred -CC-eeEEEecCCCCCcCccCCcccChHHHHHh---cCCCCCC---cHHHHHHHHHhhcCC----CCCCCCCCCccccch
Q 025256 149 -PD-VATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTF---NPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDP 216 (255)
Q Consensus 149 -~~-~g~~i~~d~~~~~~~~l~~~e~~~~~~~~---~g~~~~~---~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qr 216 (255)
.. ... |++|...-.-..+++.||......+ +|+.... ....+.+-+..++++ ...++..|||||||-
T Consensus 78 RA~~lar-VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQa 156 (263)
T COG1101 78 RANLLAR-VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQA 156 (263)
T ss_pred HhhHHHH-HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHH
Confidence 11 122 5565544444557888887665543 3432211 223345566666666 456777999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.++.|.+.+|+|+++||-|+.|||...+.++++=++.
T Consensus 157 lsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~ki 194 (263)
T COG1101 157 LSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI 194 (263)
T ss_pred HHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999998876554
No 348
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.91 E-value=1.8e-24 Score=193.58 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=102.4
Q ss_pred EECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256 112 LAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 112 LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (255)
|+||||||||||+++|+|+++ |++|+ .+++... ....+. ++++... + ..+++.++..+.....+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~-v~q~~~l-~-~~~tv~enl~~~~~~~~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINM-VFQSYAL-F-PHMTVEENVAFGLKMRKVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEE-EecCccc-c-CCCcHHHHHHHHHhhcCCCH
Confidence 689999999999999999998 99999 4665322 122444 5555332 2 23677777766543333322
Q ss_pred CCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 185 TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
......+.++++.+++. .+.++..||+||+||+++|++|+.+|+++|+||||++||+..++.+.++|.+
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 11234567788888876 4667789999999999999999999999999999999999999999998865
No 349
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.91 E-value=3.6e-24 Score=206.44 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=116.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Ccc-ccCCCCC-----CCCeeEEEecCCCCCcCcc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~d~~~~~~~~ 166 (255)
+|+|+|+++++||+++|+|||||||||||++|+|... |. +|+ .++|... +...|. +.+++.... .
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~y-v~Q~~~~~~--~ 113 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAY-VQQDDLFIP--T 113 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhcee-eccccccCc--c
Confidence 6799999999999999999999999999999999985 53 687 4666432 123454 666654332 3
Q ss_pred CCcccChHHHHHhcCCCC----CCcHHHHHHHHHhhcCC--CCCCCC------CCCccccchhhhhhhhccCCcEEEEeC
Q 025256 167 LDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 167 l~~~e~~~~~~~~~g~~~----~~~~~~~~~~l~~l~l~--~~~~~~------~lS~G~~qrv~~a~~l~~~~~ililDE 234 (255)
+++.|+..+.... ..+. +.....+.++++.+++. .+..+. .+|||||||+.+|++|+.+|+++++||
T Consensus 114 lTV~e~l~f~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 114 LTVREHLMFQAHL-RMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred CcHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 7888887765432 2222 12234567888888875 244443 599999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhh
Q 025256 235 NYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~~ 254 (255)
||++||......+.+.+.+.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l 212 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGL 212 (617)
T ss_pred CCcchhHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 350
>PTZ00243 ABC transporter; Provisional
Probab=99.90 E-value=9.5e-24 Score=220.07 Aligned_cols=161 Identities=11% Similarity=0.094 Sum_probs=124.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|++.. -.+|+|+||+|++||.|||+|++|||||||+++|.|++. |++|+ .++|...
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999997632 226799999999999999999999999999999999998 99999 4776322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~ 214 (255)
+...+. |+++.+... -++.+|+. ...+...+.+.++++..++. .+.. ...||+|||
T Consensus 1383 R~~I~i-VpQdp~LF~---gTIreNId-------p~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1383 RRQFSM-IPQDPVLFD---GTVRQNVD-------PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred HhcceE-ECCCCcccc---ccHHHHhC-------cccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 233454 788876443 25545442 22234556677777766543 2222 247999999
Q ss_pred chhhhhhhhccC-CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~-~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++||||+.+ |+||||||||+.||....+.+.+.|.+
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999985 899999999999999999999988865
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=8.9e-24 Score=218.36 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=126.8
Q ss_pred eEEEccceeeccccc---------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC
Q 025256 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~---------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~ 146 (255)
.+..+||++..+... ....+|+|+|+.+++|++++|+|||||||||||++|+|+.. .-+.+|+ .++|..
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence 588899998874211 12237799999999999999999999999999999999863 1125788 466532
Q ss_pred CC-----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCC----cHHHHHHHHHhhcCCC--CCCC-----CCCC
Q 025256 147 KP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG--SVYA-----PSFD 210 (255)
Q Consensus 147 ~~-----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~----~~~~~~~~l~~l~l~~--~~~~-----~~lS 210 (255)
.. ...|. +.+++... ..+++.|++.+.... ..+... ....+.++++.+++.. +..+ ..||
T Consensus 946 ~~~~~~~~~igy-v~Q~d~~~--~~lTV~E~L~~~a~l-r~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 946 KKQETFARISGY-CEQNDIHS--PQVTVRESLIYSAFL-RLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CChHHhhhheEE-EccccccC--CCCcHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 21 22354 66665433 337888887765432 222221 1234677888888752 3332 4799
Q ss_pred ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||||||+.+|++|+.+|++|++||||++||......+.+++.+.
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998753
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=1.4e-23 Score=218.95 Aligned_cols=161 Identities=16% Similarity=0.070 Sum_probs=124.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|+.... .+|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+ .+||...
T Consensus 1284 ~I~f~nVsf~Y~~~~~--~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCCc--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 5899999999975322 26799999999999999999999999999999999998 99999 4776322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCCC----CCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~----~~lS~G~~ 214 (255)
+...+. +++|.+... -+..+|+.. ..+...+.+.++++..++ +.+..+ ..||+|||
T Consensus 1359 R~~i~i-VpQdp~LF~---gTIr~NLdp-------~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1359 RFKITI-IPQDPVLFS---GSLRMNLDP-------FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred HhcCeE-ECCCCcccC---ccHHHHcCc-------ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 233444 788876543 244444421 123455566666665543 223222 46999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+|||+||||+.+|.++.+.+.+.|++
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988865
No 353
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.90 E-value=1.4e-24 Score=170.22 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=83.3
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC--------CCeeEEEecCCCCCcCccC
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------PDVATVLPMDGFHLYLSQL 167 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~--------~~~g~~i~~d~~~~~~~~l 167 (255)
|+++||++++|++++|+|+||||||||+++|+|+.. |++|.+ +++.... ...+. +..+..... .+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~--~~ 74 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGY-VPQDPQLFP--GL 74 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEE-EESSHCHHT--TS
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccc-ccccccccc--cc
Confidence 589999999999999999999999999999999996 566652 3321110 11111 222211100 01
Q ss_pred CcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCC----CCCCCccccchhhhhhhhccCCcEEEEeCCCC
Q 025256 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~----~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~ 237 (255)
++.++ ........+++.+.+.. ... ...||+||+||+++|++++.+|+++|+||||+
T Consensus 75 tv~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 75 TVREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp BHHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 11111 12234566777766542 333 38999999999999999999999999999996
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=3.6e-23 Score=215.31 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=124.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||+++|+...+ .+|+|+||+|++|+.+||+|++|||||||+++|.|++ +.+|+ .++|...
T Consensus 1217 ~I~f~nVs~~Y~~~~~--~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGR--AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCCc--ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence 5899999999975222 2679999999999999999999999999999999998 67899 4666321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCCC----CCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~~ 214 (255)
+...+ +|+++.+... -++.+|+.. ......+.+.++++.+++. .+..+ ..||+|||
T Consensus 1291 R~~is-~IpQdp~LF~---GTIR~NLdp-------~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1291 RKAFG-VIPQKVFIFS---GTFRKNLDP-------YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred HhceE-EEeCCCccCc---cCHHHHhCc-------ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 22344 4788876543 255554422 2234566677777776653 22222 36999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+++||||+.+|+||||||||+++|....+.+.+.|.+.
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888753
No 355
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=6.8e-23 Score=174.49 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=92.2
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHH-HHHHHhhcccC-----CCCccccCCCCCCCC-------eeEEEecCCCCC
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRINKIW-----PQKASSFDSQVKPPD-------VATVLPMDGFHL 162 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLl-k~L~gll~~~~-----p~~G~~~~~~~~~~~-------~g~~i~~d~~~~ 162 (255)
+|+++||+|++||+++|+||||||||||+ ..+...-+..+ |..+... +....++ ...+...++...
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFL-GQMDKPDVDSIEGLSPAIAIDQKTTS 88 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhh-cccCccccccccCCCceEEecCCCCC
Confidence 78999999999999999999999999996 33321100000 0000000 0000010 111111222111
Q ss_pred cCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC--cEEEEeCCC
Q 025256 163 YLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNY 236 (255)
Q Consensus 163 ~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~--~ililDEp~ 236 (255)
.....++.. .......+ .+..........+.++.+++. .+.++..||+||+||+++|++++.+| ++||+||||
T Consensus 89 ~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt 167 (226)
T cd03270 89 RNPRSTVGT-VTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPS 167 (226)
T ss_pred CCCCccHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 110011100 00000010 111111122335678888875 35678899999999999999999997 599999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 025256 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
++||+..++.+.++|.+
T Consensus 168 ~gLD~~~~~~l~~~l~~ 184 (226)
T cd03270 168 IGLHPRDNDRLIETLKR 184 (226)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999999865
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=4.7e-23 Score=213.06 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=117.6
Q ss_pred cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Ccc-ccCCCCC-----CCCeeEEEecCCCCCcC
Q 025256 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYL 164 (255)
Q Consensus 94 i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~d~~~~~~ 164 (255)
..+|+|+|+.+++|++++|+||||||||||||+|+|++. |+ +|+ .++|... +...+. +.+++.+..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~y-v~Q~d~~~~- 252 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAY-ISQNDVHVG- 252 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEE-ecccccCCC-
Confidence 337899999999999999999999999999999999997 77 898 4666322 223344 666654433
Q ss_pred ccCCcccChHHHHHhcCCCC------C-------------CcH---------------HHHHHHHHhhcCCC-------C
Q 025256 165 SQLDAMEDPKEAHARRGAPW------T-------------FNP---------------LLLLNCLKNLRNQG-------S 203 (255)
Q Consensus 165 ~~l~~~e~~~~~~~~~g~~~------~-------------~~~---------------~~~~~~l~~l~l~~-------~ 203 (255)
.+++.|+..+.....+... . .+. .....+++.+++.. +
T Consensus 253 -~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 253 -VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred -cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 4788888877554332110 0 000 11345777888752 3
Q ss_pred CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 204 ~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
..+..+||||||||.+|++++.+|+++++||||+|||.....++.++|.+.
T Consensus 332 ~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~l 382 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI 382 (1470)
T ss_pred ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999988753
No 357
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-23 Score=190.35 Aligned_cols=162 Identities=18% Similarity=0.174 Sum_probs=117.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||++.|+... . +|+||||++.+|+.++|+||||+||||++|+|..+.. ..+|. .+|++..
T Consensus 537 ~i~fsnvtF~Y~p~k-~--vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK-P--VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCCC-c--eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 589999999998642 2 6799999999999999999999999999999999997 78888 5777543
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHH------HHHh-hcCC--CCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN------CLKN-LRNQ--GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~------~l~~-l~l~--~~~----~~~~lS~G~~ 214 (255)
+...|. +++|.....+ +...|+++ +-+.+-+ +.+.+ +-+. +.++ .+. +.-+||||+|
T Consensus 611 Rs~IGV-VPQDtvLFNd---TI~yNIry-----ak~~Asn-eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK 680 (790)
T KOG0056|consen 611 RSSIGV-VPQDTVLFND---TILYNIRY-----AKPSASN-EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK 680 (790)
T ss_pred HHhcCc-ccCcceeecc---eeeeheee-----cCCCCCh-HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence 334554 6666543332 33333332 2232222 22211 1121 1222 122 2337999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||++||+++..|.++++||.|+.||....+.+...+...
T Consensus 681 QRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rl 720 (790)
T KOG0056|consen 681 QRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL 720 (790)
T ss_pred hhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877653
No 358
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.89 E-value=2.9e-23 Score=188.84 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=114.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCCe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV 151 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~~ 151 (255)
.+.+++++..-.+.+ ..+++++||++.+|+.+||+||||||||||.|+|.|..+ |.+|. .+|+-.. +.+.
T Consensus 334 ~L~Ve~l~~~PPg~~--~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 334 ALSVERLTAAPPGQK--KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred eeeEeeeeecCCCCC--CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence 688999998766533 336699999999999999999999999999999999997 88888 5666221 1222
Q ss_pred eEE---EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHH---------HHHHHhhcCCCCCCCC----CCCccccc
Q 025256 152 ATV---LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQGSVYAP----SFDHGVGD 215 (255)
Q Consensus 152 g~~---i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l~l~~~~~~~----~lS~G~~q 215 (255)
|.. +++|=.... =|+.+|+. +++ ++.+.+.+ .+++-.+-.+.+..+. .|||||||
T Consensus 409 G~hiGYLPQdVeLF~---GTIaeNIa----Rf~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 409 GRHIGYLPQDVELFD---GTIAENIA----RFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred ccccCcCcccceecC---CcHHHHHH----hcc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 221 333222111 13333322 222 22233322 3444444445555443 79999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+++|||+-.+|.+++||||-+.||......+.+.|..
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~ 517 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999988887754
No 359
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=5.1e-23 Score=212.85 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=115.0
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc-cCCCCcc-ccCCCCC-------CCCeeEEEecCCCCCcCcc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~-~~p~~G~-~~~~~~~-------~~~~g~~i~~d~~~~~~~~ 166 (255)
+|+|+|+.+++||+++|+||||||||||||+|+|++.. ..|++|+ .++|... +...+. +.+++.... .
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y-v~Q~d~~~~--~ 152 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY-NAETDVHFP--H 152 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE-eccccccCC--C
Confidence 77999999999999999999999999999999998621 1268999 4665321 122344 566554333 3
Q ss_pred CCcccChHHHHHhcCC---CCCCcH----HH-HHHHHHhhcCCC--C-----CCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 167 LDAMEDPKEAHARRGA---PWTFNP----LL-LLNCLKNLRNQG--S-----VYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 167 l~~~e~~~~~~~~~g~---~~~~~~----~~-~~~~l~~l~l~~--~-----~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+++.|+..+......- ...... .. ...+++.+++.. + ..+..+||||||||.+|++|+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 7888887765433210 011111 12 245678787753 2 2356899999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHhh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||||++||.....++.++|.+.
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~l 255 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTS 255 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=9.5e-23 Score=195.70 Aligned_cols=173 Identities=13% Similarity=0.098 Sum_probs=130.6
Q ss_pred EEEccceeeccccc-cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCC
Q 025256 78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD 150 (255)
Q Consensus 78 l~i~~lsk~y~~~~-~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~ 150 (255)
+..++++....+.. ....+|++|+..+++||+.||+||+||||||||++|+|.....-..+|+ .++|... +..
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 55666666654431 1122679999999999999999999999999999999998522235777 4666322 333
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCC----CCcHHHHHHHHHhhcCC--CCCCC-----CCCCccccchhhh
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVED 219 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~----~~~~~~~~~~l~~l~l~--~~~~~-----~~lS~G~~qrv~~ 219 (255)
.|. +.+|+..+.. +|+.|...+... ...+. +...+.+.++++.+++. .+..+ ..+|||||+||++
T Consensus 106 s~y-V~QdD~l~~~--LTV~EtL~f~A~-lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 106 SGY-VQQDDVLLPT--LTVRETLRFSAL-LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred eEE-Eccccccccc--ccHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 555 7888875544 899887776543 33444 33445678888888886 33333 4699999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|..++.+|.|+++||||+|||.....++.+++.+.
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l 216 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL 216 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999988753
No 361
>PLN03232 ABC transporter C family member; Provisional
Probab=99.88 E-value=1.2e-22 Score=211.77 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=116.2
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
.++++|+++.|+...+ ..+|+|+||+|++|+.++|+||+|||||||++.|.|++. |++|.+.. .+...+. +.
T Consensus 614 ~I~~~~vsF~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~---~~~~Iay-v~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKTS-KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV---IRGSVAY-VP 685 (1495)
T ss_pred cEEEEeeEEEcCCCCC-CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE---ecCcEEE-Ec
Confidence 5899999999975211 126799999999999999999999999999999999997 88876321 1233444 67
Q ss_pred cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCccccchhhhhhhh
Q 025256 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGDPVEDDILV 223 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~qrv~~a~~l 223 (255)
++..... -++.+|+.+ | ..++.+.+.++++...+. .+.. ...||||||||+++|||+
T Consensus 686 Q~p~Lf~---gTIreNI~f-----g--~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 686 QVSWIFN---ATVRENILF-----G--SDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred Ccccccc---ccHHHHhhc-----C--CccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 7665433 355554433 2 234566666666655442 2222 237999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ 249 (255)
..+|+|+||||||++||+...+++.+
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~ 781 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFD 781 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHH
Confidence 99999999999999999998877754
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=99.88 E-value=2e-22 Score=210.60 Aligned_cols=154 Identities=20% Similarity=0.193 Sum_probs=116.2
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ccccCCCCCCCCeeEEE
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~-G~~~~~~~~~~~~g~~i 155 (255)
.|+++|+++.|+...+ ..+|+|+||+|++|++++|+||+|||||||++.|.|++. |++ |++.- +...+. +
T Consensus 614 ~I~~~nvsf~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l----~~~Iay-v 684 (1622)
T PLN03130 614 AISIKNGYFSWDSKAE-RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI----RGTVAY-V 684 (1622)
T ss_pred ceEEEeeEEEccCCCC-CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE----cCeEEE-E
Confidence 5899999999975211 126799999999999999999999999999999999997 888 77421 223443 6
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCccccchhhhhhh
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGDPVEDDIL 222 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~qrv~~a~~ 222 (255)
.++..... -++.+|+.+ | ..++.+.+.++++..++. .+.. ...||||||||+++|||
T Consensus 685 ~Q~p~Lfn---gTIreNI~f-----g--~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 685 PQVSWIFN---ATVRDNILF-----G--SPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred cCccccCC---CCHHHHHhC-----C--CcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 77665433 355554432 2 234566666776665542 2222 33799999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ 249 (255)
+..+|+|+||||||++||+...+++.+
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHH
Confidence 999999999999999999988777653
No 363
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.88 E-value=1.4e-22 Score=211.36 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=115.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEE
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i 155 (255)
.++++|+++.|++..+. +|+|+||++++|++++|+||||||||||+++|+|++. |++|++ +++ ..+. +
T Consensus 636 ~i~~~~~~~~~~~~~~~--~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~y-v 704 (1522)
T TIGR00957 636 SITVHNATFTWARDLPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAY-V 704 (1522)
T ss_pred cEEEEEeEEEcCCCCCc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEE-E
Confidence 69999999999752122 6799999999999999999999999999999999997 899983 443 2343 6
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc---------CCC----CCCCCCCCccccchhhhhhh
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~----~~~~~~lS~G~~qrv~~a~~ 222 (255)
.++..... .++.+|+.+ | ..++.+...++++... .+. ..+...||||||||+++|||
T Consensus 705 ~Q~~~l~~---~Ti~eNI~~-----g--~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA 774 (1522)
T TIGR00957 705 PQQAWIQN---DSLRENILF-----G--KALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 774 (1522)
T ss_pred cCCccccC---CcHHHHhhc-----C--CccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 66544221 355444432 2 1123333333333222 121 23456899999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~ 252 (255)
+..+|+++|+||||++||+...+.+.+.+.
T Consensus 775 l~~~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 999999999999999999999999988774
No 364
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=4.1e-22 Score=182.43 Aligned_cols=163 Identities=20% Similarity=0.169 Sum_probs=120.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~-~~~~~~~~g~ 153 (255)
-|.+.+.|+++.|.+.. .++++++|.|+.+..++++||||+|||||||++.|.++ |..|.+.. .... .+.
T Consensus 387 ~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~---~~~ 457 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNK---LPR 457 (614)
T ss_pred CCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---ccccccccccccc---chh
Confidence 47899999999998753 25699999999999999999999999999999999998 88887311 1110 010
Q ss_pred EEecCCCCCcCccCCccc-ChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccCCcE
Q 025256 154 VLPMDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e-~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
+.+.-.. +++... ..++.... ++.....+.+..++.++++.. ...+.+||.|||.||.+|+.++.+|.+
T Consensus 458 -y~Qh~~e----~ldl~~s~le~~~~~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l 530 (614)
T KOG0927|consen 458 -YNQHLAE----QLDLDKSSLEFMMPK--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL 530 (614)
T ss_pred -hhhhhHh----hcCcchhHHHHHHHh--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE
Confidence 1111000 011100 11121111 232455677889999999874 456779999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHh
Q 025256 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 230 lilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||||||++||.+....+.+.|.+
T Consensus 531 LlLDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 531 LLLDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred EEecCCCcCCCchhHHHHHHHHhc
Confidence 999999999999999999888865
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.86 E-value=7.5e-22 Score=205.55 Aligned_cols=136 Identities=11% Similarity=0.154 Sum_probs=100.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~ 174 (255)
+|+|+||+|++|++++|+|||||||||||++|+|++. |++|++ +++ ..+. +.++..... .++.+|+.
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iay-v~Q~~~l~~---~Ti~eNI~ 508 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISF-SPQTSWIMP---GTIKDNII 508 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEE-EeCCCccCC---ccHHHHHH
Confidence 6799999999999999999999999999999999998 999983 443 2343 566554322 35555554
Q ss_pred HHHHhcCCCCCCcHHHHHH---------HHHhhcCCCC----CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 175 EAHARRGAPWTFNPLLLLN---------CLKNLRNQGS----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~---------~l~~l~l~~~----~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
+. .+ ++.....+ .++.+..+.. .....||||||||+++|||+..+|+++|||||+++||+
T Consensus 509 ~g-----~~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 FG-----LS--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred hc-----cc--cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 32 11 12122222 2222222221 23568999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 025256 242 GVWKDVSSM 250 (255)
Q Consensus 242 ~~~~~l~~l 250 (255)
...+.+.+.
T Consensus 582 ~~~~~i~~~ 590 (1490)
T TIGR01271 582 VTEKEIFES 590 (1490)
T ss_pred HHHHHHHHH
Confidence 999999874
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.85 E-value=9.1e-22 Score=164.19 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=91.3
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc----------ccCCCCC-----CCCeeEEEecCCCCC
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----------SFDSQVK-----PPDVATVLPMDGFHL 162 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~----------~~~~~~~-----~~~~g~~i~~d~~~~ 162 (255)
+++++++++| +++|+||||||||||+++|+|++. +..|. ++.+... ....+. +.++....
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL-TFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEE-EEEcCCCc
Confidence 7789999999 999999999999999999999985 44332 1222111 011122 22222110
Q ss_pred cCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhc----cCCcEEEEeCCCCC
Q 025256 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLF 238 (255)
Q Consensus 163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~ 238 (255)
++.. ....+.++++. .-..+..+..||+||+||+++|++++ .+|+++|+|||+++
T Consensus 89 -----------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 89 -----------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred -----------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 1110 12344455555 22245667899999999999999986 46799999999999
Q ss_pred CChHHHHHHHHHHHhh
Q 025256 239 LDGGVWKDVSSMFDEK 254 (255)
Q Consensus 239 LD~~~~~~l~~ll~~~ 254 (255)
||+.....+.+++.+.
T Consensus 148 LD~~~~~~l~~~l~~~ 163 (197)
T cd03278 148 LDDANVERFARLLKEF 163 (197)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.84 E-value=4.2e-21 Score=200.37 Aligned_cols=136 Identities=16% Similarity=0.098 Sum_probs=99.3
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+|+|+||+|++|++++|+||||||||||+++|+|++. |++|++.- ....+. +.++... .. .++.+|+.+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~----~~~i~y-v~Q~~~l-~~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWA----ERSIAY-VPQQAWI-MN--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEE----CCeEEE-EeCCCcc-CC--CcHHHHHHc
Confidence 6799999999999999999999999999999999997 99998422 123444 5665442 21 355555433
Q ss_pred HHHhcCCCCCCcHHHH---------HHHHHhh--cCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256 176 AHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~ 242 (255)
. ...+...+ .+.++.+ ++. .......||||||||+++|||++.+|+++|+|||+++||+.
T Consensus 744 ~-------~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 744 F-------DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred C-------ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 1 11111122 2233333 221 23456789999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 025256 243 VWKDVSS 249 (255)
Q Consensus 243 ~~~~l~~ 249 (255)
..+.+.+
T Consensus 817 ~~~~i~~ 823 (1560)
T PTZ00243 817 VGERVVE 823 (1560)
T ss_pred HHHHHHH
Confidence 8877765
No 368
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=176.31 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=118.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-CccccCCCCCCCCee-E
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVA-T 153 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-~G~~~~~~~~~~~~g-~ 153 (255)
..|+++|++..-++.. + .+++.+|++++|+-+.|.||||||||||+|.|+|+- |. +|++.. +.+.. -
T Consensus 391 ~~i~~~nl~l~~p~~~--~-ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW----P~g~G~I~~----P~~~~~l 459 (604)
T COG4178 391 HGITLENLSLRTPDGQ--T-LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW----PWGSGRISM----PADSALL 459 (604)
T ss_pred ceeEEeeeeEECCCCC--e-eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC----ccCCCceec----CCCCceE
Confidence 5799999999998753 2 569999999999999999999999999999999996 54 333110 11111 1
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCC---CCcHHHHHHHHHhhcCC--------CCCCCCCCCccccchhhhhhh
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~---~~~~~~~~~~l~~l~l~--------~~~~~~~lS~G~~qrv~~a~~ 222 (255)
.+++-.| ++ ... .+....+|. .+..+.+.++|..++++ ....-..||+|||||+++||.
T Consensus 460 flpQ~PY------~p---~Gt-Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 460 FLPQRPY------LP---QGT-LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred EecCCCC------CC---Ccc-HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence 1233332 12 221 222333332 35677888999999886 223445899999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++++|+++++||-|++||+.....+.+++++
T Consensus 530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 530 LLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 9999999999999999999999999999876
No 369
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-20 Score=166.24 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=114.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
..+|++|+.+.|.+.. +-+..||++|++||+|-|+|.||||||||++.|.|+.+ |++|+ |
T Consensus 321 ~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~--------------I 380 (546)
T COG4615 321 KTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGE--------------I 380 (546)
T ss_pred cceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCc--------------e
Confidence 4689999999998742 34689999999999999999999999999999999996 77665 4
Q ss_pred ecCCCCCcCccCCc--------ccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-------CCCCCCCCccccchhhhh
Q 025256 156 PMDGFHLYLSQLDA--------MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 156 ~~d~~~~~~~~l~~--------~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------~~~~~~lS~G~~qrv~~a 220 (255)
.+||..+...+++. ..+...+....|-........+..+++++.+.. +...-+||.|||+|+++.
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence 44444333211110 000011111122222245566777888877652 333448999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll 251 (255)
.|++.+.+|+++||+-+-.||..++.+...+
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~l 491 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVL 491 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHH
Confidence 9999999999999999999999998887654
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=8.7e-21 Score=162.84 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=46.3
Q ss_pred CCCCCCCCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 203 ~~~~~~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+..+..||+||+||+++|++++ .+|+++|+|||+++||+..++.+++.+.+.
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~ 208 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL 208 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 4566789999999999999996 368999999999999999999999988763
No 371
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.2e-20 Score=165.85 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=109.2
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.+.+.+|++.|+... . +|+++||++..|+.++++||+|+||||++++|...+. +++|. .++++..
T Consensus 262 ~v~F~~V~F~y~~~r-~--iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR-P--ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc-h--hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 477899999998742 2 6699999999999999999999999999999999996 66766 2444321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCCC----CCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~----~~lS~G~~ 214 (255)
+.-.|. +++|-.... +..+....+|-+..- .+......+...+ +.+..+ -.+|||||
T Consensus 336 R~aIg~-VPQDtvLFN--------Dti~yni~ygr~~at-~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek 405 (497)
T COG5265 336 RRAIGI-VPQDTVLFN--------DTIAYNIKYGRPDAT-AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred HHHhCc-Ccccceehh--------hhHHHHHhccCcccc-HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence 111222 333322111 011111122222222 2222222222222 222222 27899999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||++||+++.+|+|+++||.|+.||....+++..-+++.
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~ 445 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREV 445 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887753
No 372
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.3e-20 Score=170.10 Aligned_cols=157 Identities=12% Similarity=0.007 Sum_probs=104.2
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
-|.+.+++..||++. .|.+-++++..|..+||+|+||+|||||||+|+.---..+|.. ..-.|..+.
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~ve---------qE~~g~~t~ 146 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVE---------QEVRGDDTE 146 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCch---------hheeccchH
Confidence 477889999999855 6799999999999999999999999999999987110001110 000111111
Q ss_pred --cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHH-HHHhhcCCC---CCCCCCCCccccchhhhhhhhccCCcEE
Q 025256 157 --MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 157 --~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~-~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~~il 230 (255)
+++.. .-.+...+......+........+.. +|.-+++.. ......||||.|.|+++||||..+||+|
T Consensus 147 ~~~~~l~------~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlL 220 (582)
T KOG0062|consen 147 ALQSVLE------SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLL 220 (582)
T ss_pred HHhhhhh------ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEE
Confidence 11110 00011122222211111112333333 777777763 4567799999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHH
Q 025256 231 IVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 231 ilDEp~~~LD~~~~~~l~~ll~ 252 (255)
+|||||+.||..+..-+-+.|.
T Consensus 221 LLDEPTNhLDv~av~WLe~yL~ 242 (582)
T KOG0062|consen 221 LLDEPTNHLDVVAVAWLENYLQ 242 (582)
T ss_pred eecCCcccchhHHHHHHHHHHh
Confidence 9999999999988777776664
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=1.1e-20 Score=159.33 Aligned_cols=157 Identities=12% Similarity=0.112 Sum_probs=92.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
-++++|+. .|++.. +++++++ ++++|+||||||||||+++|.-.+.. +... .. ....+.++
T Consensus 5 ~l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~--~~~~--~~----~~~i~~~~- 65 (212)
T cd03274 5 KLVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGF--RASK--MR----QKKLSDLI- 65 (212)
T ss_pred EEEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhcc--CHHH--hh----hhhHHHHh-
Confidence 36777876 777644 6688887 79999999999999999999855420 0000 00 00111111
Q ss_pred cCCCCCcCccCCcccChHH--------HHHhcCCCCCCcHH--HHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 157 MDGFHLYLSQLDAMEDPKE--------AHARRGAPWTFNPL--LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~--------~~~~~g~~~~~~~~--~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
..+.. .+.++..+.... .....++....... ...++++.+++. .+.++..||+||+||+++|++++
T Consensus 66 ~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 66 HNSAG--HPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred cCCCC--CCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 11100 000111111110 00112221111000 012223333333 34556789999999999999996
Q ss_pred c----CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 L----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ~----~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
. +|+++|+|||+++||+..+..+.+++.+.
T Consensus 144 ~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~ 177 (212)
T cd03274 144 LHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER 177 (212)
T ss_pred hcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 3 57999999999999999999999998763
No 374
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=1.9e-19 Score=155.58 Aligned_cols=145 Identities=9% Similarity=0.056 Sum_probs=93.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-c-ccCCC--------C--CCCCeeEEEecCCCC-------CcCccC
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQ--------V--KPPDVATVLPMDGFH-------LYLSQL 167 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~~~--------~--~~~~~g~~i~~d~~~-------~~~~~l 167 (255)
..+++|+||||||||||+++|++++. +..| + ...+. . .......++.++... -..+.+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 56999999999999999999999996 5433 3 22211 0 011122223333210 001123
Q ss_pred CcccChHHHHHhcC-C-CCCCcHHHHHHHHHhhcCCC----------------------CCCCCCCCccccchhhhhhhh
Q 025256 168 DAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG----------------------SVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 168 ~~~e~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~l~~----------------------~~~~~~lS~G~~qrv~~a~~l 223 (255)
++.++......... + ........+.+.++.+++.. +.++..||+||+||+++|+++
T Consensus 102 tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 102 TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 33333221111101 1 11223456777888887752 246779999999999999999
Q ss_pred c----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 224 G----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+ .+|+++|+|||+++||+..++.+.+++.+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~ 216 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH 216 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 7 578999999999999999999999998763
No 375
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=3.5e-19 Score=154.25 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC---CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~---~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
...++++.++++ ....+..||+||+||+++|++|+.+ |+++|+||||++||+..++.+.++|.+.
T Consensus 148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l 218 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218 (261)
T ss_pred HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 345667777775 3567789999999999999999986 7999999999999999999999998753
No 376
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=2.1e-19 Score=181.72 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=122.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++|++.+|..... ++|+|+||+|++||.|||+|..|||||||+..|.++.. |.+|+ .+||-..
T Consensus 1138 ~I~f~~~~~RYrp~lp--~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLP--LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCCCc--chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 5899999999977432 36799999999999999999999999999999999997 88888 5676321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~ 214 (255)
+...+. |++|...... |++.|++. ..++..+.+-+.+|...+. .+.. ...||-|||
T Consensus 1213 RsrlsI-IPQdPvLFsG---TvR~NLDP-------f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1213 RSRLSI-IPQDPVLFSG---TVRFNLDP-------FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred HhcCee-eCCCCceecC---ccccccCc-------ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 233343 7777654331 33333322 2334555566666665542 2222 237999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|.+++||||+.+.+||++||.|+..|++.-..|.+.|.+.
T Consensus 1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888887777653
No 377
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=3e-19 Score=161.01 Aligned_cols=157 Identities=14% Similarity=0.117 Sum_probs=108.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
.+++-.++.|.|++.. |.--.=+|..||++|++||||-|||||.++|+|.++ |++|...+ - -+
T Consensus 341 ~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~~~~--------~-~v 403 (591)
T COG1245 341 TLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGSEED--------L-KV 403 (591)
T ss_pred eeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCCCcc--------c-eE
Confidence 3567778888888753 233334677899999999999999999999999998 99985111 1 13
Q ss_pred ecCCCCCcC-ccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256 156 PMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 156 ~~d~~~~~~-~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ilil 232 (255)
++-.+++.. .+.++.+.. ...... ...+.....++.+-|.+. .+..+..||||+-|||++|.+|..++|++++
T Consensus 404 SyKPQyI~~~~~gtV~~~l---~~~~~~-~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYll 479 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLL---RSAIRS-AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLL 479 (591)
T ss_pred eecceeecCCCCCcHHHHH---HHhhhh-hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEe
Confidence 333333321 112322211 111110 011222334556656655 4678889999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHh
Q 025256 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 DEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||.+.||.+.+-.+...|..
T Consensus 480 DEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 480 DEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred cCchhhccHHHHHHHHHHHHH
Confidence 999999999998888777654
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.80 E-value=6.1e-20 Score=168.26 Aligned_cols=158 Identities=13% Similarity=0.048 Sum_probs=102.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
.-+.++++++.|.+.. .++|+.|++.+|+.+||+|+|||||||+|++|+|... |.. +.... +
T Consensus 74 ~dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p----------~~~d~-y 135 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIP----------EHIDF-Y 135 (614)
T ss_pred ccceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCC----------cccch-h
Confidence 3589999999998855 7799999999999999999999999999999999885 422 12221 1
Q ss_pred ecCCCCCcCccCCcc-----------cChHHHHHhcCCC-CCCcHHHH-------------------HHHHHhhcCC---
Q 025256 156 PMDGFHLYLSQLDAM-----------EDPKEAHARRGAP-WTFNPLLL-------------------LNCLKNLRNQ--- 201 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~-----------e~~~~~~~~~g~~-~~~~~~~~-------------------~~~l~~l~l~--- 201 (255)
.++-...+. ..+.. ...++...+.... ++.+.+.. ..++-.+++.
T Consensus 136 ~ls~e~~ps-~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 136 LLSREIEPS-EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred hhcccCCCc-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 111111000 00000 0001111111110 11111111 1222222222
Q ss_pred CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 202 ~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~ 252 (255)
.......||||+++|+++|++|..+|++|+|||||++||..+..-+-+.|.
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~ 265 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA 265 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence 345677999999999999999999999999999999999988877777664
No 379
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=6.8e-19 Score=158.20 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=120.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
.|++-+.+|++.|.+.. . .+..++|-|.--..|+|+||||.||||||++|.|-+. |..|+..... +-.+|.
T Consensus 584 PPvLGlH~VtFgy~gqk-p--LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnh--rL~iG~- 654 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQK-P--LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNH--RLRIGW- 654 (807)
T ss_pred CCeeecccccccCCCCC-c--hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccc--eeeeec-
Confidence 47889999999996632 2 4599999999999999999999999999999999997 8888722111 122232
Q ss_pred EecCCCCCcCccCCcccCh-HHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256 155 LPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~-~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~il 230 (255)
+| .+ ....++..+.+ ++..+.+.+| .......|..+++. ..+++..|||||+.||++|-.-+..|+||
T Consensus 655 --Fd-Qh-~~E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl 726 (807)
T KOG0066|consen 655 --FD-QH-ANEALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL 726 (807)
T ss_pred --hh-hh-hHHhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE
Confidence 11 11 11223433333 3444444443 34556777777775 34678899999999999998888999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHh
Q 025256 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 ilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||||||+.||.++...+.+.|.+
T Consensus 727 ILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 727 ILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred EecCCCCCcchhhHHHHHHHHHh
Confidence 99999999999999988888764
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.77 E-value=6.1e-19 Score=148.80 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=92.2
Q ss_pred eEEEccceeeccccccccccccccceecC-CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-cc-------CCCCC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-------DSQVK 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~-~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~-------~~~~~ 147 (255)
.|+++|+. .|.+. .+++|... +|++++|+||||||||||++.|++.+.. +..+. .. .....
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence 47888988 66442 55566544 5899999999999999999999965421 22222 11 00000
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHH--HHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC--LKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~--l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
....+. +..+....+ .+.. ..++ +...+... +....+. .+..+..||+||+||+++|+++
T Consensus 75 ~~~v~~-~f~~~~~~~----~~~r-------~~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 75 TAEVSF-TFQLGGKKY----RVER-------SRGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred cEEEEE-EEEECCeEE----EEEE-------ecCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence 111222 222211110 1111 0111 11222111 1111111 2566779999999999999999
Q ss_pred cc----------CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 224 GL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 224 ~~----------~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+. +|+++|+|||+++||+..++.+.+++.+.
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~ 179 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI 179 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 74 57899999999999999999999888653
No 381
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1e-18 Score=176.77 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=117.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
...++++|.++..+.. .....|+||||+|++|+.+||+||-|||||+||..|.|.++ ..+|+ .++|. .+
T Consensus 516 ~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----ia- 585 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VA- 585 (1381)
T ss_pred CceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EE-
Confidence 3569999999998763 23336799999999999999999999999999999999997 67776 23332 22
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC---------C----CCCCCCccccchhhhh
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---------V----YAPSFDHGVGDPVEDD 220 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~---------~----~~~~lS~G~~qrv~~a 220 (255)
++++..-... -++.+| +-+...++.+.+.++++...+..+ . +.-.||||||||+++|
T Consensus 586 Yv~Q~pWI~n---gTvreN-------ILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 586 YVPQQPWIQN---GTVREN-------ILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred EeccccHhhC---CcHHHh-------hhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 2444332211 233333 333455788888888887766432 2 2238999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHH
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~l 250 (255)
||+-.++||++||-|++++|.+.-+.+.+-
T Consensus 656 RAVY~~adIYLLDDplSAVDahvg~~if~~ 685 (1381)
T KOG0054|consen 656 RAVYQDADIYLLDDPLSAVDAHVGKHIFEE 685 (1381)
T ss_pred HHHhccCCEEEEcCcchhhhHhhhHHHHHH
Confidence 999999999999999999999887777653
No 382
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=2.1e-18 Score=142.13 Aligned_cols=172 Identities=16% Similarity=0.268 Sum_probs=121.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc--ccCC-CC---C-
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDS-QV---K- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~~-~~---~- 147 (255)
|+++.++|++..+...+..+.+++++|+++++||+-||+|.+|||||-.+|.|+|..+..|--... .|+. +. .
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 678899999999987666777899999999999999999999999999999999999866644433 2222 10 0
Q ss_pred ---CCCee---EEEecCCCCCcCccCCcccChHHHH-Hhc-CCC-C----------CCcHHHHHHHHHhhcCCC-----C
Q 025256 148 ---PPDVA---TVLPMDGFHLYLSQLDAMEDPKEAH-ARR-GAP-W----------TFNPLLLLNCLKNLRNQG-----S 203 (255)
Q Consensus 148 ---~~~~g---~~i~~d~~~~~~~~l~~~e~~~~~~-~~~-g~~-~----------~~~~~~~~~~l~~l~l~~-----~ 203 (255)
+.-.| .+|+++.. +-.+..+... ..+ .+| + .+......+++..+++.. .
T Consensus 81 r~RRk~ig~~isMIFQeP~-------sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQ-------SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred HHhhhhhccchhhhhcCch-------hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 01111 12333332 1112111111 111 111 1 112344567777887763 3
Q ss_pred CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 204 ~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
-++.++.-|+.|+|.+|.|++.+|++||.||||+.+|+..+.++..++..
T Consensus 154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~ 203 (330)
T COG4170 154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSR 203 (330)
T ss_pred hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999988754
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.75 E-value=2.5e-18 Score=144.25 Aligned_cols=131 Identities=14% Similarity=0.063 Sum_probs=81.5
Q ss_pred ceecCCCeEEEEECCCCCcHHHHHHHHH----HhhcccCCCCccc------cCCCCCCCCeeEEEecCC-CCCc--CccC
Q 025256 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASS------FDSQVKPPDVATVLPMDG-FHLY--LSQL 167 (255)
Q Consensus 101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~----gll~~~~p~~G~~------~~~~~~~~~~g~~i~~d~-~~~~--~~~l 167 (255)
++++.+| +++|+||||||||||+++|. |... |++|.. +.........+. +..+. ...+ ...+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~-~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKL-AFENANGKKYTITRSL 91 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEE-EEEeCCCCEEEEEEEh
Confidence 3456667 99999999999999999996 5543 655531 111111122222 22221 1000 0001
Q ss_pred CcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccch------hhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr------v~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
++.++..+ .+ .....+.+ +..+..||+||+|| ++++++++.+|+++|+|||+++||+
T Consensus 92 ~~~~~~~~------~~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 92 AILENVIF------CH----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154 (204)
T ss_pred hHhhceee------ec----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence 22221111 01 11111111 55677999999996 6888999999999999999999999
Q ss_pred HHHH-HHHHHHHh
Q 025256 242 GVWK-DVSSMFDE 253 (255)
Q Consensus 242 ~~~~-~l~~ll~~ 253 (255)
..++ .+.+++.+
T Consensus 155 ~~~~~~l~~~l~~ 167 (204)
T cd03240 155 ENIEESLAEIIEE 167 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 9999 99998865
No 384
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=1.6e-17 Score=138.68 Aligned_cols=137 Identities=11% Similarity=0.108 Sum_probs=86.5
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--Ccc----ccCCCCCCCCeeEEEecCCCCCcCccCCcc
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS----SFDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~--~G~----~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~ 170 (255)
++++++++.+| +.+|+||||||||||+..|...+....+. .|. .+.......... +.++....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~--~~~~~~~~~------- 81 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKIT--VTLKNQGLD------- 81 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEE--EEEEcCCcc-------
Confidence 36677778776 88999999999999999998765311000 111 000000001111 111111100
Q ss_pred cChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh----ccCCcEEEEeCCCCCCChHHHHH
Q 025256 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKD 246 (255)
Q Consensus 171 e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l----~~~~~ililDEp~~~LD~~~~~~ 246 (255)
++ .........+.++++. .-....++..||+||+||+++|+++ +.+|+++|+|||+++||...+..
T Consensus 82 ~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~ 151 (198)
T cd03276 82 AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI 151 (198)
T ss_pred CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHH
Confidence 00 0000112334455555 3334667789999999999999999 58999999999999999999999
Q ss_pred HHHHHHh
Q 025256 247 VSSMFDE 253 (255)
Q Consensus 247 l~~ll~~ 253 (255)
+.++|.+
T Consensus 152 ~~~~l~~ 158 (198)
T cd03276 152 STDLLVK 158 (198)
T ss_pred HHHHHHH
Confidence 9998865
No 385
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.74 E-value=1.6e-18 Score=139.03 Aligned_cols=160 Identities=19% Similarity=0.143 Sum_probs=101.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCee--
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA-- 152 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g-- 152 (255)
.+++++||...- -|-.+|.++..||++-++||||||||||+-.++|++ |-+|+ .++|.......+
T Consensus 2 ~l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 2 ILMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATE 69 (248)
T ss_pred ceeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhH
Confidence 356777776542 346778899999999999999999999999999998 77776 344432111000
Q ss_pred -----EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC--CCCCCCCccccchhhhhhhhc-
Q 025256 153 -----TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVG- 224 (255)
Q Consensus 153 -----~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~--~~~~~lS~G~~qrv~~a~~l~- 224 (255)
.++.++....+ .++++... -...|.......+..+...++++.+ ..+..||||+-|||-+|...+
T Consensus 70 LArhRAYLsQqq~p~f--~mpV~~YL-----~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 70 LARHRAYLSQQQTPPF--AMPVWHYL-----TLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHHHHHHHhhccCCcc--hhhhhhhh-----hhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence 00111111100 01111100 0111222223344566666666643 456799999999998776542
Q ss_pred ------cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 225 ------LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 225 ------~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
...+++|+|||.++||...+..+..++.+.
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~ 178 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHH
Confidence 234789999999999999988888887653
No 386
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.74 E-value=1.4e-17 Score=136.70 Aligned_cols=171 Identities=15% Similarity=0.022 Sum_probs=119.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCC-CC----C
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-KP----P 149 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~-~~----~ 149 (255)
..|++.++.+.|.... + ++-|+|++++.|....++|.||||||||||+|+|--- .-.|.+ ..+.. .. .
T Consensus 12 ~aievsgl~f~y~~~d-P--~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSD-P--IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred ceEEEeccEEecccCC-c--eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCcccccccc
Confidence 3699999999997643 3 5599999999999999999999999999999999542 222321 22211 00 1
Q ss_pred CeeEEEecCCCCCcC----ccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhcc
Q 025256 150 DVATVLPMDGFHLYL----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~----~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
..|....+.+.-... .+.+..-+.......+++.. .+.++-..+++.+.+....+....|-|||+||.++..|+.
T Consensus 86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~ 164 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK 164 (291)
T ss_pred ccCceeEecccccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc
Confidence 122222222211000 00111112222233444422 2336667788888888889999999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+-++|+|||.|--||...+..+.++|.+
T Consensus 165 PfkVLLLDEVTVDLDVlARadLLeFlke 192 (291)
T KOG2355|consen 165 PFKVLLLDEVTVDLDVLARADLLEFLKE 192 (291)
T ss_pred ceeEEEeeeeEeehHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 387
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.73 E-value=1.5e-17 Score=153.75 Aligned_cols=167 Identities=15% Similarity=0.055 Sum_probs=115.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCccc---cCCCCCCCCe
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASS---FDSQVKPPDV 151 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~~---~~~~~~~~~~ 151 (255)
.+|++++|+..-++. ..++++++||+|.+|+-+.|.||||||||+|+|+|+|+- | .+|.+ .++. +..
T Consensus 432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW----p~~~G~l~k~~~~~---~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW----PSTGGKLTKPTDGG---PKD 502 (659)
T ss_pred ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc----ccCCCeEEecccCC---CCc
Confidence 689999999998774 223569999999999999999999999999999999996 6 56662 2221 111
Q ss_pred eEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCC--------CC-----CCCCCCCccccchh
Q 025256 152 ATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--------GS-----VYAPSFDHGVGDPV 217 (255)
Q Consensus 152 g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--------~~-----~~~~~lS~G~~qrv 217 (255)
...+++-.|... =+..+..-+... ........+.+.+...|+++.++ .+ -....||+||+||+
T Consensus 503 lfflPQrPYmt~---GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTL---GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCccc---cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 112333332110 011111111100 00111234556777888887764 12 23458999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++||.+.++|++-||||-|+++|++...++...+++.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998888753
No 388
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=6.8e-18 Score=168.10 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=117.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCCeeEEEecCCCCCcCccCCc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQLDA 169 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~~g~~i~~d~~~~~~~~l~~ 169 (255)
+|+||+=-+++|.++||+|+|||||||||++|+|.... --.+|+ .++|... ....|. +.+++.++. .+|+
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GY-vqQ~DiH~~--~~TV 881 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGY-VEQQDIHSP--ELTV 881 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccce-eecccccCc--ccch
Confidence 67999999999999999999999999999999998520 012445 3555322 234565 788877664 4899
Q ss_pred ccChHHHHHhcC---CCCCCcHHHHHHHHHhhcCC--CCCCCC----CCCccccchhhhhhhhccCC-cEEEEeCCCCCC
Q 025256 170 MEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDILVGLQH-KVVIVDGNYLFL 239 (255)
Q Consensus 170 ~e~~~~~~~~~g---~~~~~~~~~~~~~l~~l~l~--~~~~~~----~lS~G~~qrv~~a~~l~~~~-~ililDEp~~~L 239 (255)
.|-+.+....+- ++.+...+.+.++++.|++. .+.-+. -||.+||+|+.||..|+.+| -||+|||||+||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 888877655442 22222335578899999887 333333 49999999999999999999 999999999999
Q ss_pred ChHHHHHHHHHHHhh
Q 025256 240 DGGVWKDVSSMFDEK 254 (255)
Q Consensus 240 D~~~~~~l~~ll~~~ 254 (255)
|..+...+..+++..
T Consensus 962 DsqaA~~i~~~lrkl 976 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKL 976 (1391)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999888888887654
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=1.1e-17 Score=144.31 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=92.9
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cC--------CCCC-
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD--------SQVK- 147 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~--------~~~~- 147 (255)
++++|. +.|.+.. ++...++ +++|+||||||||||+.+|++++. +..|.. .. +...
T Consensus 4 i~l~nf-~~~~~~~---------~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~r~~~~~~~i~~~~~~~ 69 (247)
T cd03275 4 LELENF-KSYKGRH---------VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG---EKSSHLRSKNLKDLIYRARVGK 69 (247)
T ss_pred EEEECc-cccCCCe---------eecCCCC-eEEEECCCCCCHHHHHHHHHHHhC---CCcccccccchhhhcccCcccc
Confidence 667776 6665321 1222334 999999999999999999999995 555542 11 1100
Q ss_pred -CCCeeE-EEecCC---CCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCC-------------------
Q 025256 148 -PPDVAT-VLPMDG---FHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG------------------- 202 (255)
Q Consensus 148 -~~~~g~-~i~~d~---~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~------------------- 202 (255)
.+.... .+.+.. .+.... ....+.. ..+.+ ........+.++++.+++..
T Consensus 70 ~~~~~~~v~~~f~~~~~~~~~~~-~~~~~~~----~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~ 144 (247)
T cd03275 70 PDSNSAYVTAVYEDDDGEEKTFR-RIITGGS----SSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKN 144 (247)
T ss_pred CCCceEEEEEEEEcCCCcEEEEE-EEEECCc----eEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhcc
Confidence 000111 011111 100000 0000000 00011 11123344456666666531
Q ss_pred -----CCCCCCCCccccchhhhhhhhccC----CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 203 -----SVYAPSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 203 -----~~~~~~lS~G~~qrv~~a~~l~~~----~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
...+..||+||+||+++|++++.+ |+++|+|||+++||+..+..+.++|.+.
T Consensus 145 p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~ 205 (247)
T cd03275 145 PPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQ 205 (247)
T ss_pred CcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHh
Confidence 122368999999999999999764 8999999999999999999999988764
No 390
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.68 E-value=3e-16 Score=156.18 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
...+.++.++++ ....+..||+||+||+.+|++|+.+| +++|+|||+++||+..++.+.++|++.
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l 879 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL 879 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 345677788876 35678899999999999999999998 999999999999999999999998763
No 391
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.68 E-value=8.4e-17 Score=133.86 Aligned_cols=146 Identities=48% Similarity=0.864 Sum_probs=126.9
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (255)
-+.-+++|++|+.|+||||++..+... ||..-..|+.+..+ ...++++|||++++..++.+++++..+.++|.|
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~a----Wp~~~~~f~~e~i~--iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNA----WPVNVNKFAQESIN--IAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhh----cchhhhhhhhhhcc--eeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 345789999999999999998877764 57664444433322 456689999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhhc--CCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhhC
Q 025256 184 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~--l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~~ 255 (255)
++|+...++++++.+. -..+.++|.|+++.+..+.--..+....+|+|+||.+..||.++|+.+.++++++|
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~ 263 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKY 263 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhhe
Confidence 9999999999999888 45789999999999999998888888999999999999999999999999999876
No 392
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.66 E-value=3.4e-16 Score=144.79 Aligned_cols=166 Identities=21% Similarity=0.232 Sum_probs=116.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCC---
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD--- 150 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~--- 150 (255)
.+.+++++++..- .++|+||++++|||+||.|-=|||+|-|++.|.|..+ +++|+ .++|+.....
T Consensus 261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp~ 329 (500)
T COG1129 261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPR 329 (500)
T ss_pred CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCHH
Confidence 4578888886442 3489999999999999999999999999999999876 78888 5666432211
Q ss_pred ----eeE-EEecC----CCCCcCccCCcccChHHH-HHh-c--CC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccc
Q 025256 151 ----VAT-VLPMD----GFHLYLSQLDAMEDPKEA-HAR-R--GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (255)
Q Consensus 151 ----~g~-~i~~d----~~~~~~~~l~~~e~~~~~-~~~-~--g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~ 213 (255)
.|. +++-| |..+ .+++.+|.... ... . ++ .............+.+.+. .+..+..||||.
T Consensus 330 ~Ai~~Gi~~v~EDRk~~Gl~l---~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGN 406 (500)
T COG1129 330 DAIKAGIAYVPEDRKSEGLVL---DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN 406 (500)
T ss_pred HHHHcCCEeCCcccccCcCcC---CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchh
Confidence 121 12211 1111 13444444333 111 1 11 1111222345556666654 456777999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|||.+|+.|..+|++||+||||-|.|...+.++.+++.+.
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l 447 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999764
No 393
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=5.2e-16 Score=154.19 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=55.1
Q ss_pred HHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhcc---CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~---~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
..++++.++++ ....+..||+||+||+.+|++|+. +|+++||||||++||+..++.+.++|.+.
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l 877 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL 877 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 45667777775 356778999999999999999986 58999999999999999999999998764
No 394
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.65 E-value=6.6e-16 Score=160.23 Aligned_cols=62 Identities=11% Similarity=-0.049 Sum_probs=54.4
Q ss_pred HHHHhhcCC---CCCCCCCCCccccchhhhhhhhc---cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~---~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++++.+++. .+..+..||+||+||+++|++|+ .+|+++|+||||++||+...+.+.++|++.
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L 858 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL 858 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 567777775 35677899999999999999997 699999999999999999999999999763
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.60 E-value=7e-16 Score=128.90 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=73.9
Q ss_pred ccccceecCCC-eEEEEECCCCCcHHHHHHHHH-HhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256 97 TSALASNVNVK-HIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 97 l~~vsl~i~~G-eiv~LiGpNGsGKSTLlk~L~-gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~ 174 (255)
+.++||++.+| ++++|+||||||||||+|+|+ +.+. + ..|..++.... .
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~-------------~~G~~vp~~~~------------~- 67 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---A-------------QSGLPIPAAEG------------S- 67 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---H-------------HcCCCcccccc------------c-
Confidence 36789999999 489999999999999999998 3321 1 11111111100 0
Q ss_pred HHHHhcCC-CCCCcHHHHHHHHHhhcC--CCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH-H
Q 025256 175 EAHARRGA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS-M 250 (255)
Q Consensus 175 ~~~~~~g~-~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~-l 250 (255)
..++ .+.+ ..++. ........||+||+|++.++.++ .+|+++|+|||+.++|+..+..+.. +
T Consensus 68 ----~~~~~~~~~---------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~ 133 (200)
T cd03280 68 ----SLPVFENIF---------ADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAI 133 (200)
T ss_pred ----cCcCccEEE---------EecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence 0010 0000 00010 12234568999999999988775 6999999999999999998888753 4
Q ss_pred HH
Q 025256 251 FD 252 (255)
Q Consensus 251 l~ 252 (255)
+.
T Consensus 134 l~ 135 (200)
T cd03280 134 LE 135 (200)
T ss_pred HH
Confidence 43
No 396
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.60 E-value=2.2e-15 Score=135.00 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=107.2
Q ss_pred Eccceeeccccccc--cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe-
Q 025256 80 ARCMDEVYDALAQR--LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP- 156 (255)
Q Consensus 80 i~~lsk~y~~~~~~--i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~- 156 (255)
+.+|..+|+..+.. -.+++|+||++++|++++|+|+|||||||++++|+|.....+ . +..+|+.|. +.
T Consensus 380 ~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~----e----e~y~p~sg~-v~v 450 (593)
T COG2401 380 FQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG----E----EKYRPDSGK-VEV 450 (593)
T ss_pred HHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc----c----cccCCCCCc-eec
Confidence 44555666654322 236799999999999999999999999999999999874221 1 111333333 22
Q ss_pred --------cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC----CCCCCCCCccccchhhhhhhhc
Q 025256 157 --------MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 157 --------~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
+.+.+-+ .+. ... +...+. ...-|.....+++...++.. .....+||-|||.|+.+|.+++
T Consensus 451 p~nt~~a~iPge~Ep--~f~---~~t-ilehl~-s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla 523 (593)
T COG2401 451 PKNTVSALIPGEYEP--EFG---EVT-ILEHLR-SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA 523 (593)
T ss_pred cccchhhccCccccc--ccC---chh-HHHHHh-hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh
Confidence 1221100 011 001 111111 12234556778888888763 4456799999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
..|.+++.||-.+.||+.+...+..-|.+
T Consensus 524 erpn~~~iDEF~AhLD~~TA~rVArkise 552 (593)
T COG2401 524 ERPNVLLIDEFAAHLDELTAVRVARKISE 552 (593)
T ss_pred cCCCcEEhhhhhhhcCHHHHHHHHHHHHH
Confidence 99999999999999999988877776654
No 397
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.60 E-value=1.4e-15 Score=128.97 Aligned_cols=130 Identities=26% Similarity=0.368 Sum_probs=96.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~ 188 (255)
++||+||||||||||++.|++++. ++.+ ... ..++++|+++.....+. +. . .....++|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~--------~~~-v~vi~~D~f~~~~~~~~--~~-~-~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD--------HPN-VELITTDGFLYPNKELI--ER-G-LMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC--------CCc-EEEEecCcccCcHHHHH--Hh-h-hhhcCCCcccCCH
Confidence 589999999999999999999994 2110 112 34588999975432111 11 1 1124667888999
Q ss_pred HHHHHHHHhhcC-CCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh-HHHHHHHHHHHhh
Q 025256 189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEK 254 (255)
Q Consensus 189 ~~~~~~l~~l~l-~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~-~~~~~l~~ll~~~ 254 (255)
..+.++++.+.. +....+|.||+...++.......+.+++|+|+||.++..|+ ..|..+.+++|.+
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ 132 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFS 132 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeE
Confidence 999999999998 46789999999999988766554678899999999999884 4567788877754
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.60 E-value=3.6e-16 Score=141.26 Aligned_cols=162 Identities=19% Similarity=0.203 Sum_probs=99.5
Q ss_pred cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE------
Q 025256 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL------ 155 (255)
Q Consensus 82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i------ 155 (255)
++..+|+...= .|..+= ...+|+++||+||||-||||.+|+|+|.+. |.-|..-+ +|.+-.++
T Consensus 79 e~vHRYg~NgF---kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~----pp~wdeVi~~FrGt 147 (591)
T COG1245 79 EVVHRYGVNGF---KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYED----PPSWDEVIKRFRGT 147 (591)
T ss_pred cceeeccCCce---EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCC----CCCHHHHHHHhhhh
Confidence 46778876321 112211 356799999999999999999999999997 77765211 11111100
Q ss_pred ecCCCC--CcCccCCcccChHHHH----HhcC----CCCCC-cHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 156 PMDGFH--LYLSQLDAMEDPKEAH----ARRG----APWTF-NPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 156 ~~d~~~--~~~~~l~~~e~~~~~~----~~~g----~~~~~-~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
.+.+|+ +...++.+...+.+.- ...| +.... ..-.+.++.+.+++. .+..+.+||||+-||+++|.+
T Consensus 148 ELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~ 227 (591)
T COG1245 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAA 227 (591)
T ss_pred HHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHH
Confidence 000000 0000011110011100 0000 00000 001235666666665 577889999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++.++|++++|||++.||...+-.+..++.+.
T Consensus 228 l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel 259 (591)
T COG1245 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIREL 259 (591)
T ss_pred HhccCCEEEEcCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888764
No 399
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.59 E-value=1.9e-15 Score=132.62 Aligned_cols=135 Identities=24% Similarity=0.363 Sum_probs=100.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (255)
+...++||+||||||||||+++|.+++. .||+.| ...++.+|+++.....+.. .. .....|+|+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~-~~~~~g-----------~V~vi~~D~f~~~~~~l~~---~g-~~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS-RWPEHR-----------KVELITTDGFLHPNQVLKE---RN-LMKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh-hcCCCC-----------ceEEEecccccccHHHHHH---cC-CccccCCCh
Confidence 4568999999999999999999999984 233332 2345789998754321110 00 123567889
Q ss_pred CCcHHHHHHHHHhhcCCCC-CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh------HHHHHHHHHHHhhC
Q 025256 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKW 255 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~------~~~~~l~~ll~~~~ 255 (255)
.++...+.+.+..+.-+.. ..+|.||+....++.-....+.+++|||+||.+...++ ..|..+.+++|.+|
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~I 201 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI 201 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEE
Confidence 9999999999999988864 89999999999988766556678999999999888543 45777888887653
No 400
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.1e-15 Score=136.08 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=114.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
-|.+++.+|++.|...+- ..+.++++.++--..++++|+||+||||++|++.+.+. |.+|.+ ... +...+.
T Consensus 360 ~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~ri~~ 431 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLRIKY 431 (582)
T ss_pred CCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cceecc
Confidence 468999999999976432 35699999999999999999999999999999999886 777752 221 111121
Q ss_pred EEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCCCC---CCCCCCCccccchhhhhhhhccCCcE
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~~~---~~~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
..+ +++.. ++.. ...... ...+|.. ..+.+...+..+++..+ ..+..||||||-||++|.....+|.+
T Consensus 432 -f~Q--hhvd~--l~~~--v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Phl 503 (582)
T KOG0062|consen 432 -FAQ--HHVDF--LDKN--VNAVDFMEKSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHL 503 (582)
T ss_pred -hhH--hhhhH--HHHH--hHHHHHHHHhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcE
Confidence 111 11110 1111 111110 1112222 45677888888988743 33678999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHH
Q 025256 230 VIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 230 lilDEp~~~LD~~~~~~l~~ll~ 252 (255)
|+|||||+.||.++-..+...|.
T Consensus 504 LVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 504 LVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred EEecCCCccccHHHHHHHHHHHH
Confidence 99999999999988888776653
No 401
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.57 E-value=3.5e-15 Score=136.86 Aligned_cols=161 Identities=14% Similarity=0.058 Sum_probs=105.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ccccCCCCCCCCeeEEE
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~-G~~~~~~~~~~~~g~~i 155 (255)
-|.++||-..-+.. .+ ++..++|.|++|--+.|+||||||||+|+|+|.|+. |.. |.... .+++.-.++
T Consensus 481 gI~lenIpvItP~~--~v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW----Pvy~g~L~~---P~~~~mFYI 550 (728)
T KOG0064|consen 481 GIILENIPVITPAG--DV-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW----PVYNGLLSI---PRPNNIFYI 550 (728)
T ss_pred ceEEecCceeccCc--ce-eecceeEEecCCceEEEECCCCccHHHHHHHHhccC----cccCCeeec---CCCcceEec
Confidence 37788888887663 33 569999999999999999999999999999999996 653 33111 123333334
Q ss_pred ecCCCCCc---CccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-----------CCCCCCCCCccccchhhhhh
Q 025256 156 PMDGFHLY---LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 156 ~~d~~~~~---~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~lS~G~~qrv~~a~ 221 (255)
++..|.-- +.+. ...+......+.|+. ...+..+++.+.+. ..-....||||+|||+++||
T Consensus 551 PQRPYms~gtlRDQI-IYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 551 PQRPYMSGGTLRDQI-IYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMAR 625 (728)
T ss_pred cCCCccCcCccccee-ecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHH
Confidence 43332110 0000 011111122234543 23344555555442 11233589999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~ 252 (255)
.+-+.|+..+|||-|++..+.....+.+...
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 9999999999999999988877777766543
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=3.1e-14 Score=120.18 Aligned_cols=51 Identities=16% Similarity=-0.029 Sum_probs=43.4
Q ss_pred CCCCCCCCccccchhhhhhhh----ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~~qrv~~a~~l----~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
...+..||+||+|++.++.++ +.+|+++|+|||+++||+..+..+.+++.+
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~ 175 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE 175 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 445669999999998766443 579999999999999999999999998865
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.54 E-value=1.4e-14 Score=118.99 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=42.6
Q ss_pred CCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 209 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 209 lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+||++++++++ .+|+++|+|||++++|+..++.+.+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999985 689999999999999999999999988753
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.53 E-value=2.8e-14 Score=115.39 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=41.4
Q ss_pred CCccccchhhhhhhhcc----CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 209 FDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 209 lS~G~~qrv~~a~~l~~----~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+||++|+.+++++.. +|+++|+|||+.++|+..+..+.+.+.+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999976 7899999999999999999988887754
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.52 E-value=1.3e-14 Score=121.17 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=30.0
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++++++++. |++++|+||||||||||+|+|+|..
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 458877665 7999999999999999999999976
No 406
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.1e-14 Score=127.67 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=92.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
-|.++|.+.+..+.- .+.+.++.|-.|..+||+||||-||||||+.|+..--. .++.+-.++.
T Consensus 264 DIKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-------------IPpnIDvLlC 326 (807)
T KOG0066|consen 264 DIKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-------------IPPNIDVLLC 326 (807)
T ss_pred cceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-------------CCCCCceEee
Confidence 378888888876643 56999999999999999999999999999999876421 1222222111
Q ss_pred cCCCCCcCccCCcc-----------cChHHHHHhcC---CCCCCc-------------------HHHHHHHHHhhcCC--
Q 025256 157 MDGFHLYLSQLDAM-----------EDPKEAHARRG---APWTFN-------------------PLLLLNCLKNLRNQ-- 201 (255)
Q Consensus 157 ~d~~~~~~~~l~~~-----------e~~~~~~~~~g---~~~~~~-------------------~~~~~~~l~~l~l~-- 201 (255)
-... +.. ..+.. +.++......+ -..... ......+|.-|++.
T Consensus 327 EQEv-vad-~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskE 404 (807)
T KOG0066|consen 327 EQEV-VAD-STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKE 404 (807)
T ss_pred eeee-eec-CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChh
Confidence 1110 000 00100 00000000000 011111 12233444444443
Q ss_pred -CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHH
Q 025256 202 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (255)
Q Consensus 202 -~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~ 245 (255)
.+..-..||||.+.||.+||||...|.+|.|||||+.||-...-
T Consensus 405 MQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 405 MQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceee
Confidence 23444589999999999999999999999999999999976543
No 407
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.48 E-value=5.3e-14 Score=120.48 Aligned_cols=134 Identities=34% Similarity=0.585 Sum_probs=111.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (255)
+..-+|||.|+.|+||||+.+.|.-++. .||.+ + ...++++|||+.+...+.. .-.+.+.|+|+
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~-~~~~~----------~-~v~lvpmDGFhy~n~~L~~----~glm~rKGfPe 143 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLS-RWPES----------P-KVDLVTMDGFHYPNAVLDE----RGLMARKGFPE 143 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHh-hCCCC----------C-ceEEEeccccccCHhHhhh----ccccccCCCCc
Confidence 4467899999999999999999999995 34432 2 3556999999887644442 23455789999
Q ss_pred CCcHHHHHHHHHhhcCCC-CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 185 TFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+|...+.+.+..++-+. ++.+|.||+-....++-+..+..+|+|||+||+..++|...|-.+.+++|..
T Consensus 144 SyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfS 214 (283)
T COG1072 144 SYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFS 214 (283)
T ss_pred cccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEE
Confidence 999999999999999664 5999999999999999999999999999999999999998888888877643
No 408
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.47 E-value=3.1e-13 Score=123.54 Aligned_cols=172 Identities=16% Similarity=0.131 Sum_probs=118.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CC
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PP 149 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~ 149 (255)
-+++++++|+..-... +.++++|||++++|||+||+|-.|-|-+.|+..|+|+.+ |.+|+ .+++... .+
T Consensus 255 ~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~~ 328 (501)
T COG3845 255 EVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSP 328 (501)
T ss_pred CeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCCH
Confidence 4689999999876542 337899999999999999999999999999999999986 77788 4555332 00
Q ss_pred ------CeeEEEecCCCC-CcCccCCcccChHHHHHhc------CC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCcc
Q 025256 150 ------DVATVLPMDGFH-LYLSQLDAMEDPKEAHARR------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (255)
Q Consensus 150 ------~~g~~i~~d~~~-~~~~~l~~~e~~~~~~~~~------g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G 212 (255)
..+. |+-|-.. -.-.+++..+|........ ++ ..........++++.+... .......||||
T Consensus 329 ~~~r~~G~~~-VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 329 RERRRLGLAY-VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHhcCCcc-CChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 1111 2211100 0001234444443322211 11 0111122335566666554 34556799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+||+-+||-+..+|++||+-.||-|||....+.+.+.|.+
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e 448 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE 448 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888887754
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=3.8e-14 Score=120.35 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=75.2
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+.+|+++++.++++++|.||||+|||||+++++-..- +.+-|.+++- ..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~g~~vpa-----~~---- 67 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL----------------------MAQIGCFVPC-----DS---- 67 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH----------------------HHHhCCCcCc-----cc----
Confidence 5699999999999999999999999999999885431 1122211110 00
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh--ccCCcEEEEeCC---CCCCChHHHHH
Q 025256 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVWKD 246 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l--~~~~~ililDEp---~~~LD~~~~~~ 246 (255)
...+ .+.+++..+++.... ...+|.|+++++.+++++ +.+|+++|+||| |+++|......
T Consensus 68 --~~~~--------~~~~il~~~~l~d~~-~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~ 132 (222)
T cd03285 68 --ADIP--------IVDCILARVGASDSQ-LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW 132 (222)
T ss_pred --EEEe--------ccceeEeeeccccch-hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH
Confidence 0000 111223333333222 467999999999999888 889999999999 88899876643
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.46 E-value=2.6e-14 Score=119.58 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=64.9
Q ss_pred ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHH
Q 025256 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (255)
Q Consensus 99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~ 178 (255)
..++++..|++++|+||||||||||+++|++..- ....|.++.-...
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~---------------~~~~g~~~~~~~~------------------ 67 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVL---------------LAQIGCFVPAESA------------------ 67 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHH---------------HHHcCCCcccccc------------------
Confidence 3455666899999999999999999999996541 1111111100000
Q ss_pred hcCCCCCCcHHHHHHHHHhhcC--CCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256 179 RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 179 ~~g~~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ 249 (255)
..++..+ ++..+.. ........|+.+++| +..+.+++.+|+++|+|||++++|+.....+..
T Consensus 68 ~i~~~dq--------i~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 68 SIPLVDR--------IFTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ccCCcCE--------EEEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 0000000 0000000 011223456666665 555667778999999999999999987776644
No 411
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.46 E-value=2.5e-13 Score=113.52 Aligned_cols=125 Identities=27% Similarity=0.386 Sum_probs=98.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (255)
++.-+|||.|+|||||||+++.|.-+++ .. ...++++|+|+...++.+..++.. .++..|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~---------------~~-~~~~I~~D~YYk~~~~~~~~~~~~---~n~d~p~ 66 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG---------------VE-KVVVISLDDYYKDQSHLPFEERNK---INYDHPE 66 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC---------------cC-cceEeeccccccchhhcCHhhcCC---cCccChh
Confidence 3457999999999999999999999994 23 344589999987655444332222 2556688
Q ss_pred CCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+++.+.+.+.+..|.-+..+..|.||+-+..|..-. .-..+.+|+|+||.+...|+ .++++++.
T Consensus 67 A~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~~-i~~~p~~VVIvEGi~~l~d~----~lr~~~d~ 130 (218)
T COG0572 67 AFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPET-IKVEPNDVVIVEGILLLYDE----RLRDLMDL 130 (218)
T ss_pred hhcHHHHHHHHHHHHcCCcccccccchhcccccCCc-cccCCCcEEEEecccccccH----HHHhhcCE
Confidence 999999999999999999999999999888888522 23457899999999999994 67766654
No 412
>PTZ00301 uridine kinase; Provisional
Probab=99.45 E-value=1.8e-13 Score=115.16 Aligned_cols=127 Identities=23% Similarity=0.339 Sum_probs=93.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~ 187 (255)
-+|||.|++|||||||++.|...+.. .. .+....++.+|+|+....+++..+ ....+++.|++++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~---~~---------~~~~~~vi~~D~yy~~~~~~~~~~---~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMA---HC---------GPVSIGVICEDFYYRDQSNIPESE---RAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHh---hc---------CCCeEEEeCCCCCccCcccCCHHH---hcCCCCCChhhhC
Confidence 68999999999999999998876631 00 122344588999886654333221 1123667789999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 188 ~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
...+.+.+..+.-+.....|.|++....|..-.. .+.+++|+|+||.++..++ ++.+++|.+
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~-~i~p~~ViIvEGi~~l~~~----~l~~l~D~~ 130 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAV-TMTPKSVLIVEGILLFTNA----ELRNEMDCL 130 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCceE-EeCCCcEEEEechhhhCCH----HHHHhCCEE
Confidence 9999999999998888999999998888875433 3457799999999997675 666666654
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=5.4e-14 Score=117.88 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=73.2
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+.+|+++++++|++++|+||||+||||++++++++.- ....|..+ .... ..++..
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~v--pa~~---~~l~~~----- 72 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFV--PAEY---ATLPIF----- 72 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCc--chhh---cCccCh-----
Confidence 5699999999999999999999999999999998873 22222211 0000 001111
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHH
Q 025256 176 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 246 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~ 246 (255)
..++..++.. .......||.|+++. ..+.+++.+++++|+|||+.++|+.....
T Consensus 73 ----------------d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~ 128 (204)
T cd03282 73 ----------------NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFA 128 (204)
T ss_pred ----------------hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHH
Confidence 1112222222 233456889999975 45566778999999999999999865443
No 414
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.45 E-value=5.7e-13 Score=133.42 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=115.9
Q ss_pred ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----C-CCeeEEEecCCCCCcCcc
Q 025256 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P-PDVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 93 ~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~-~~~g~~i~~d~~~~~~~~ 166 (255)
.+.+++|++.-+++|+.+.++||.||||||||+.|+|-+.+..-..|+ .++|... + .+.+ ++.+++.+ .+.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~a-Y~~e~DvH--~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVA-YNSEQDVH--FPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEE-eccccccc--cce
Confidence 345789999999999999999999999999999999998644333455 3555321 2 2222 24555544 445
Q ss_pred CCcccChHHHHHhcCC---CCCCc-HH----HHHHHHHhhcCC-------CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 167 LDAMEDPKEAHARRGA---PWTFN-PL----LLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 167 l~~~e~~~~~~~~~g~---~~~~~-~~----~~~~~l~~l~l~-------~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+|+.+-+++..+-.+. .++.. .+ ....+++.+++. .+....-.|||||+||.++-+++.++.++.
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 8998888877654432 11111 12 133567777765 344566899999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.||++.|||..+.-++.+.+..
T Consensus 284 ~De~t~GLDSsTal~iik~lr~ 305 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIKALRQ 305 (1391)
T ss_pred eecccccccHHHHHHHHHHHHH
Confidence 9999999999998888887764
No 415
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.44 E-value=3.3e-13 Score=112.36 Aligned_cols=113 Identities=26% Similarity=0.461 Sum_probs=75.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~ 188 (255)
++||+||||||||||+++|++++. ... ..++..|+++... ...+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---------------~~~-~~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---------------NPK-VVIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---------------CCC-eEEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999983 222 3348888876432 222211111223445666777
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
+.+.+.+..+..+.....|.|+....+++.... .+.+++++|+|+++++.++
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV-TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce-ecCCCCEEEEechhhccch
Confidence 777788888887766666655544333332222 4678999999999999986
No 416
>PRK05439 pantothenate kinase; Provisional
Probab=99.42 E-value=1.9e-13 Score=120.90 Aligned_cols=133 Identities=28% Similarity=0.406 Sum_probs=99.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~ 185 (255)
..-+|||.|++|||||||++.|..++.+ |+ ......++.+|||+.....+.. ......+|.|++
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~-~~-----------~~~~v~vi~~DdFy~~~~~l~~----~~l~~~kg~Pes 148 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSR-WP-----------EHPKVELVTTDGFLYPNAVLEE----RGLMKRKGFPES 148 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh-hC-----------CCCceEEEeccccccCHHHHhh----hhccccCCCccc
Confidence 3568999999999999999999998841 00 1122345999999865433221 112235788999
Q ss_pred CcHHHHHHHHHhhcCCCC-CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH--HHHHHHHHHHhh
Q 025256 186 FNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEK 254 (255)
Q Consensus 186 ~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~--~~~~l~~ll~~~ 254 (255)
++...+.+.+..+.-+.. +..|.||+-...++.-....+.+++|||+||.+.+.++. .|..+.+++|.+
T Consensus 149 ~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~ 220 (311)
T PRK05439 149 YDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFS 220 (311)
T ss_pred ccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEE
Confidence 999999999999998875 899999999988885554556789999999998886554 577788887764
No 417
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=4.5e-13 Score=117.38 Aligned_cols=47 Identities=17% Similarity=0.018 Sum_probs=42.1
Q ss_pred CCCccccchhhhhhhhcc----CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 208 ~lS~G~~qrv~~a~~l~~----~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.||+||+||+++|++++. +|+++|+|||+++||+..+..+.++|.+.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~ 220 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL 220 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 489999999999986543 99999999999999999999999988753
No 418
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.41 E-value=3.8e-13 Score=112.96 Aligned_cols=118 Identities=24% Similarity=0.369 Sum_probs=79.5
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (255)
-++|++++|+||||||||||++.|++++. ....+ ++.+|+++.........+ .....++.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~~---~~~~~~~~~ 63 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG---------------KLEIV-IISQDNYYKDQSHLEMAE---RKKTNFDHP 63 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc---------------ccCCe-EecccccccChhhCCHHH---hcCCCCCCc
Confidence 36799999999999999999999999984 22333 478888754322111111 001112234
Q ss_pred CCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
..++...+.+.++.+..+.....|.|+.....+... ...+.+.+++|+|+.++.+++
T Consensus 64 ~~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~ 120 (207)
T TIGR00235 64 DAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDE 120 (207)
T ss_pred cHhHHHHHHHHHHHHHCCCCEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchH
Confidence 455666677788888778888889888766655332 223457899999999888764
No 419
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.39 E-value=5.4e-13 Score=113.78 Aligned_cols=133 Identities=43% Similarity=0.708 Sum_probs=93.5
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE-EecCCCCCcCccCCcccChHHHHHhcCC
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~-i~~d~~~~~~~~l~~~e~~~~~~~~~g~ 182 (255)
-.+..++||+||||||||||++.|+++++ ++.|. ..+ +.+|+++.....+. .. ......+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~-----------~~v~i~~D~~~~~~~~~~--~~--g~~~~~~~ 91 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGEL-----------PAIQVPMDGFHLDNAVLD--AH--GLRPRKGA 91 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCC-----------ceEEEecccccCCHHHHH--hc--ccccccCC
Confidence 35678999999999999999999999995 33331 112 67888764321111 00 01112345
Q ss_pred CCCCcHHHHHHHHHhhcCCC-CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 183 PWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+..++...+..++..+..+. ....|.|+....+.+.-...+...++++|+|+.+..++...+..+.+++|.+
T Consensus 92 ~~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~v 164 (229)
T PRK09270 92 PETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFT 164 (229)
T ss_pred CCCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEE
Confidence 67778888888888888776 7888999998887765444444467899999999998877777777666543
No 420
>PLN02796 D-glycerate 3-kinase
Probab=99.35 E-value=1.2e-12 Score=116.76 Aligned_cols=133 Identities=23% Similarity=0.324 Sum_probs=90.7
Q ss_pred cccccceec---CCCeE-----EEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccC
Q 025256 96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167 (255)
Q Consensus 96 ~l~~vsl~i---~~Gei-----v~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l 167 (255)
+++++++.+ ++|+. +||+|++|||||||++.|.+++. +. | ...+. +++|++++...+.
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g---------~~~g~-IsiDdfYLt~~e~ 146 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G---------RRAAS-LSIDDFYLTAADQ 146 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C---------CceeE-EEECCcccchhhH
Confidence 567888887 45655 99999999999999999999994 11 1 12454 8999998643211
Q ss_pred Ccc--cCh-HHHHHhcCCCCCCcHHHHHHHHHhhc----CCCCCCCCCCCcc----ccchhhhh--hhhccCCcEEEEeC
Q 025256 168 DAM--EDP-KEAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDHG----VGDPVEDD--ILVGLQHKVVIVDG 234 (255)
Q Consensus 168 ~~~--e~~-~~~~~~~g~~~~~~~~~~~~~l~~l~----l~~~~~~~~lS~G----~~qrv~~a--~~l~~~~~ililDE 234 (255)
... +++ ......+|.+.+++.....+.++.+. -+..+.+|.|+.. +..|.... ..+..+++|||+||
T Consensus 147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG 226 (347)
T PLN02796 147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG 226 (347)
T ss_pred HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence 111 111 11223456677888888888888876 4567889988864 45576432 23345789999999
Q ss_pred CCCCCChH
Q 025256 235 NYLFLDGG 242 (255)
Q Consensus 235 p~~~LD~~ 242 (255)
.+.|.-+.
T Consensus 227 w~vG~~p~ 234 (347)
T PLN02796 227 WMLGFKPL 234 (347)
T ss_pred cccCCCCC
Confidence 99998553
No 421
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.34 E-value=4.8e-12 Score=106.30 Aligned_cols=117 Identities=25% Similarity=0.398 Sum_probs=80.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (255)
.++.+|+|.|+||||||||++.|++.+. ..... ++.+|+++.....++.. ......++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~---~~~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------DESIA-VIPQDSYYKDQSHLSFE---ERVKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------CCceE-EEeCCccccCcccCCHH---HhcccCccCcc
Confidence 4688999999999999999999999983 23333 47888886543222211 11112334466
Q ss_pred CCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
.++...+.+.++.+..+.....|.|+.....+.... ....+.+++|+|++++..++
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~ 120 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDE 120 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCCe-EEeCCCCEEEEEeehhcCch
Confidence 777888888888888777777888876555554321 12356789999999998764
No 422
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.32 E-value=2.7e-12 Score=115.58 Aligned_cols=140 Identities=15% Similarity=0.186 Sum_probs=90.8
Q ss_pred cccceecCCC-----eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcC-ccCCccc
Q 025256 98 SALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAME 171 (255)
Q Consensus 98 ~~vsl~i~~G-----eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~-~~l~~~e 171 (255)
.+..|.|+.| +++..+|.||.|||||+++++|.++ |+.|..+. ... +++-...+.. ..-++..
T Consensus 353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~p------~ln--VSykpqkispK~~~tvR~ 421 (592)
T KOG0063|consen 353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEIP------VLN--VSYKPQKISPKREGTVRQ 421 (592)
T ss_pred eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCccc------ccc--eeccccccCccccchHHH
Confidence 5556666665 5688999999999999999999987 77764100 000 1111111110 0011111
Q ss_pred ChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ 249 (255)
.. ....+. ...+.....++++-|.+. .+..+..+|||+.||++++..|-..++++++|||.+.||.+++.....
T Consensus 422 ll--~~kIr~--ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 422 LL--HTKIRD--AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred HH--HHHhHh--hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 00 011111 112334456677766655 466778999999999999999999999999999999999998876655
Q ss_pred HHH
Q 025256 250 MFD 252 (255)
Q Consensus 250 ll~ 252 (255)
.+.
T Consensus 498 vik 500 (592)
T KOG0063|consen 498 VIK 500 (592)
T ss_pred HHH
Confidence 543
No 423
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.30 E-value=1.7e-11 Score=117.74 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=52.2
Q ss_pred HHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 192 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 192 ~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.|..++++ .-.....||||+.||+.+|..|.... .++||||||.||-..-.+++++.|+..
T Consensus 803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL 871 (935)
T COG0178 803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL 871 (935)
T ss_pred HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 3445555665 45667799999999999999997666 899999999999999999999988765
No 424
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.28 E-value=1.6e-11 Score=128.04 Aligned_cols=66 Identities=11% Similarity=-0.066 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC---CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 189 ~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~---~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
...++.|..++++ .....+.|||||.||+.+|..|..+ +.++||||||.||++...+.+.++|+..
T Consensus 1677 ~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635 1677 QKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTL 1748 (1809)
T ss_pred HHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 3446777788887 5677889999999999999999754 6899999999999999999999998865
No 425
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=9.8e-12 Score=108.60 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=42.3
Q ss_pred CCCCccccchhhhhhhhc---------cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 207 PSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 207 ~~lS~G~~qrv~~a~~l~---------~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
..+|.||++++.++++++ .+|+++|+|||+++||+..++.+.+.+.+
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~ 237 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG 237 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc
Confidence 357999999999999875 69999999999999999999999998853
No 426
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.24 E-value=5.6e-13 Score=110.79 Aligned_cols=127 Identities=31% Similarity=0.508 Sum_probs=84.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCC-CeeEEEecCCCCCcCccCCcccChHHH--HHhcCCCCC
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWT 185 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~-~~g~~i~~d~~~~~~~~l~~~e~~~~~--~~~~g~~~~ 185 (255)
+|||.||+|||||||.+.|...++ ..|. .+ .....+.+|+++... ...+..... ...+..|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~----~~~~-------~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a 66 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN----KRGI-------PAMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDA 66 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT----TCTT-------TCCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----ccCc-------CccceeEEEeeccccccc---chhhHhhccccccCCCCccc
Confidence 689999999999999999999994 1210 10 012336777764321 000000000 012334677
Q ss_pred CcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 186 ~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++...+.+.+..|.-+.....|.|++..+.+.. ...+..+++|+|+||.++++|+. +.+++|.+
T Consensus 67 ~d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~ 130 (194)
T PF00485_consen 67 FDFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLK 130 (194)
T ss_dssp BSHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEE
T ss_pred cCHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeE
Confidence 888889999999998888889999988877776 23345688999999999999974 55555543
No 427
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.22 E-value=1.6e-11 Score=115.80 Aligned_cols=117 Identities=24% Similarity=0.392 Sum_probs=83.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~ 185 (255)
.--+|||+||||||||||++.|++++. ..+. +.+|+++... ......+..+..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp-----------------~vgv-IsmDdy~~~~---------~~i~~nfD~P~a 116 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP-----------------SIAV-ISMDNYNDSS---------RIIDGNFDDPRL 116 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC-----------------CcEE-EEEcceecch---------hhhCccCCChhh
Confidence 346899999999999999999999872 2344 8999985221 001112223444
Q ss_pred CcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 186 ~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++...+.+.+..+.-+.....|.|++-..+|..-....+...+|+|+||.++..+ ++.+++|.+
T Consensus 117 ~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlk 180 (656)
T PLN02318 117 TDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLR 180 (656)
T ss_pred cchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEE
Confidence 5666677778888888889999999988777643333456889999999999753 577776654
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.19 E-value=1.7e-11 Score=120.74 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=73.1
Q ss_pred ccceecCCC-eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHH
Q 025256 99 ALASNVNVK-HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (255)
Q Consensus 99 ~vsl~i~~G-eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~ 177 (255)
.+++.+..+ ++++|+||||+|||||||+|+|..- .+..|..++..... .+.. ..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l---------------~aq~G~~Vpa~~~~----~~~~------~d 367 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL---------------MFQSGIPIPANEHS----EIPY------FE 367 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH---------------HHHhCCCccCCccc----cccc------hh
Confidence 367778777 8999999999999999999999831 22222212221100 0000 00
Q ss_pred HhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH-HHHH
Q 025256 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD 252 (255)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~-~ll~ 252 (255)
..+. .... -.++. .....||++|++++.+...+ .++.++|+|||+.|+|+.....+. .+++
T Consensus 368 ~i~~---~i~~--~~si~--------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe 429 (771)
T TIGR01069 368 EIFA---DIGD--EQSIE--------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE 429 (771)
T ss_pred heee---ecCh--HhHHh--------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 0000 0000 01111 23567999999998877765 689999999999999999888774 4554
No 429
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.18 E-value=4.5e-11 Score=108.70 Aligned_cols=122 Identities=21% Similarity=0.304 Sum_probs=79.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcc--cCh-HHHHHhcCCC
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM--EDP-KEAHARRGAP 183 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~--e~~-~~~~~~~g~~ 183 (255)
.-+|||+|++|||||||++.|.++++ +. ....+. |.+|++++...+.... .++ ......+|.+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~---~~----------g~~vgv-ISiDDfYLt~eer~kL~~~nP~n~LL~~RG~P 277 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFR---VT----------GRKSAT-LSIDDFYLTAEGQAELRERNPGNALLELRGNA 277 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc---cc----------CCceEE-EEECCccCChHHHHHHHhhCccchhhcccCCC
Confidence 47899999999999999999999984 11 112454 8999998642211100 000 0011123556
Q ss_pred CCCcHHHHHHHHHhh----cCCCCCCCCCCCcc----ccchhhhh--hhhccCCcEEEEeCCCCCCChH
Q 025256 184 WTFNPLLLLNCLKNL----RNQGSVYAPSFDHG----VGDPVEDD--ILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l----~l~~~~~~~~lS~G----~~qrv~~a--~~l~~~~~ililDEp~~~LD~~ 242 (255)
..++.....+.++.+ ..+..+.+|.|+.. +..|+... ..+..+++|||+||++.|..+.
T Consensus 278 GTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~ 346 (460)
T PLN03046 278 GSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPL 346 (460)
T ss_pred ccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCC
Confidence 677777666666666 45667888988764 46676542 2334577999999999888553
No 430
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.18 E-value=1.4e-11 Score=101.72 Aligned_cols=44 Identities=7% Similarity=-0.152 Sum_probs=32.3
Q ss_pred CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 204 ~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~ 248 (255)
.....||+|++|...+.. .+.+|+++|+|||+.++|+.....+.
T Consensus 57 ~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~ 100 (185)
T smart00534 57 QGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIA 100 (185)
T ss_pred ccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHH
Confidence 345678888886443333 34599999999999999998766653
No 431
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.18 E-value=6.5e-11 Score=100.17 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.8
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.+++++++.+ ++++|+||||+|||||+|.+++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 55999999887 999999999999999999999865
No 432
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.17 E-value=6.9e-11 Score=99.78 Aligned_cols=41 Identities=10% Similarity=-0.063 Sum_probs=31.4
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHH-HHHHH
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFD 252 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l-~~ll~ 252 (255)
-+-+|++.+++++.++.++|+|||+.++|+.....+ ..+++
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 455788888889999999999999999998653333 34443
No 433
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.17 E-value=1.1e-10 Score=96.51 Aligned_cols=122 Identities=24% Similarity=0.338 Sum_probs=83.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~ 188 (255)
+|+|.|++|||||||++.|+..+. . ..++.+|+++....++..... ...+++.|..++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~-----------------~-~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP-----------------N-CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-----------------C-CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999872 1 234899999876543332111 1125666888899
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccccchhh-------------hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhhC
Q 025256 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255 (255)
Q Consensus 189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~-------------~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~~ 255 (255)
..+.+.+..+.-+.....+.++.+...... -+.....+.+++|+|++++..|+ .+.+++|.+|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 999999998887765555555554432211 12234557789999999988876 4666666543
No 434
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.12 E-value=1e-10 Score=96.09 Aligned_cols=112 Identities=24% Similarity=0.333 Sum_probs=76.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~ 188 (255)
+++|.|++|||||||++.|+..+. .. .....++.+|+++.+. .. + ......+..+..++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~----~~----------~~~~~~i~~Ddf~~~~--~~--~--~~~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR----VN----------GIGPVVISLDDYYVPR--KT--P--RDEDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH----Hc----------CCCEEEEehhhcccCc--cc--c--cccCCCCCCCccccH
Confidence 589999999999999999999984 11 1123458999987543 00 0 000011222333577
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD 240 (255)
+.+.+.+..+..+.....|.|+.-..++..-....+.+.+|||+||+++..+
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~ 112 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE 112 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH
Confidence 7788888888878888889998877776653223456789999999999764
No 435
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.12 E-value=1.7e-10 Score=97.42 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh----ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l----~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
..+...+..+.+.. ..+|+||+..+++|..+ ..+.+++||||+.+.||...+..+.++|.+.
T Consensus 121 ~~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~ 186 (220)
T PF02463_consen 121 KDLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKEL 186 (220)
T ss_dssp HHHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHH
T ss_pred cccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44445555544433 38999999999877544 4578899999999999999999999998753
No 436
>PLN02348 phosphoribulokinase
Probab=99.10 E-value=1.3e-10 Score=105.27 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=82.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC----CCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS----QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~----~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~ 180 (255)
..-+|||.|++|||||||++.|...+. ..+. ...+ +....+...++.+|+|+..... .+...
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg----~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~---------~r~~~ 114 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG----GAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT---------GRKEK 114 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh----hccCCCccccccccccccCceEEEEcccccCCChh---------hHhhc
Confidence 456999999999999999999999984 1111 0000 0111234556899999754311 01111
Q ss_pred C----CCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 181 G----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 181 g----~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
+ .|...+...+.+.++.|..+.....|.|++-...+..- ..+.+++|||+||.+..+|+
T Consensus 115 g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e 177 (395)
T PLN02348 115 GVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDE 177 (395)
T ss_pred CCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCc
Confidence 1 14556667788889999988889999998876654432 23557899999999998885
No 437
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.10 E-value=2.8e-10 Score=99.55 Aligned_cols=106 Identities=27% Similarity=0.417 Sum_probs=69.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC----CC
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW 184 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~----~~ 184 (255)
++||+|+||||||||++.|++++. +..+.++..|+++.. .. ..+...|+ +.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~----------------~~~~~vi~~Dd~~~~----~~-----~~r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG----------------SDLVTVICLDDYHSL----DR-----KGRKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC----------------CCceEEEECcccccC----CH-----HHHHHhhccccccc
Confidence 589999999999999999999993 334555777876421 11 11122232 22
Q ss_pred CCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
..+.....+.++.+.-+.....|.|+.-...... ...+.+.+++|+|++++..++
T Consensus 56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~ 110 (273)
T cd02026 56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDE 110 (273)
T ss_pred chhHHHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCch
Confidence 2334455667777777777777888766554322 112346799999999987774
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.02 E-value=1e-09 Score=93.69 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=72.2
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHH-HHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTL-lk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
+.++++.+.+++ .+++|++++|.|+|||||||| ++.+++.++ +...+.++.
T Consensus 8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---------------~g~~~~yi~ 59 (230)
T PRK08533 8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ---------------NGYSVSYVS 59 (230)
T ss_pred EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---------------CCCcEEEEe
Confidence 445566666654 268899999999999999999 688998874 222233333
Q ss_pred cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh----ccCCcEEEE
Q 025256 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIV 232 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l----~~~~~ilil 232 (255)
.+. +..+..... ..+|+ +...... ...+.. .... +.++++..++..+.+.+ ..+|+++++
T Consensus 60 ~e~--------~~~~~~~~~-~~~g~----~~~~~~~-~~~l~~-~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVI 123 (230)
T PRK08533 60 TQL--------TTTEFIKQM-MSLGY----DINKKLI-SGKLLY-IPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIII 123 (230)
T ss_pred CCC--------CHHHHHHHH-HHhCC----chHHHhh-cCcEEE-EEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 222 111111111 23332 1111100 011111 1111 34555543333222222 236999999
Q ss_pred eCCCCCC----ChHHHHHHHHHHH
Q 025256 233 DGNYLFL----DGGVWKDVSSMFD 252 (255)
Q Consensus 233 DEp~~~L----D~~~~~~l~~ll~ 252 (255)
|||++++ |+..++++.+++.
T Consensus 124 De~t~~l~~~~d~~~~~~l~~~l~ 147 (230)
T PRK08533 124 DSLSSLISNDASEVAVNDLMAFFK 147 (230)
T ss_pred ECccHHhcCCcchHHHHHHHHHHH
Confidence 9999998 7777777877765
No 439
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.01 E-value=2.2e-10 Score=96.49 Aligned_cols=42 Identities=7% Similarity=-0.057 Sum_probs=39.1
Q ss_pred ccchhhhhhhhccCCcEEEEeCCC-----CCCChHHHHHHHHHHHhh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~-----~~LD~~~~~~l~~ll~~~ 254 (255)
+++++.+|++++.+|+++++|||+ ++||+..++++.+++.+.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 777789999999999999999999 999999999999999764
No 440
>PRK07429 phosphoribulokinase; Provisional
Probab=99.01 E-value=1.5e-09 Score=97.16 Aligned_cols=116 Identities=25% Similarity=0.430 Sum_probs=75.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC----
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---- 182 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~---- 182 (255)
--++||+|+||||||||++.|++++. +..+.++.+|+++.. . ...+...+.
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~----------------~~~~~vi~~Dd~~~~----~-----~~~r~~~g~~~l~ 62 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLG----------------EELVTVICTDDYHSY----D-----RKQRKELGITALD 62 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhc----------------cCceEEEEecccccC----C-----HHHHHhcCCcccC
Confidence 45899999999999999999999983 333445788887421 1 111223332
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+...+...+.+.++.+..+.....|.|+........- ..+.+.+++|+|++++..+. .+.+++|.
T Consensus 63 p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~~----~lr~~~D~ 127 (327)
T PRK07429 63 PRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYDE----RVRELYDF 127 (327)
T ss_pred ccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCcH----hHHhhCCE
Confidence 3334455667777777777777777777655544321 12345789999999988775 34444443
No 441
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.00 E-value=8.2e-10 Score=93.74 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=33.5
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.+++++.+.+|++++|+||||+||||+++++++..
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~ 55 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT 55 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999999999999999999943
No 442
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.97 E-value=7.4e-10 Score=96.60 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=23.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.-++|+||||||||||++.|+|++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5789999999999999999999994
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.95 E-value=6e-10 Score=83.50 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=31.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~ 128 (255)
+|++++|++++|++++|+||||||||||++++.
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 789999999999999999999999999999976
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.94 E-value=6e-10 Score=110.11 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=69.6
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHH
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~ 177 (255)
+|+++. ..+.++.|.|||++||||+||.++...- ....|..++-... ..++..+...
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~---------------maq~G~~vpa~~~----~~i~~~~~i~--- 375 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAAL---------------MAKSGLPIPANEP----SEIPVFKEIF--- 375 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHH---------------HHHhCCCcccCCC----ccccccceEE---
Confidence 445443 2467899999999999999999976641 1222221221110 0011111100
Q ss_pred HhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ 249 (255)
...|..+ ........||++|++++.+++++ .+|.++|+|||+.|+|+.....+..
T Consensus 376 ~~ig~~~----------------si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~ 430 (782)
T PRK00409 376 ADIGDEQ----------------SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAI 430 (782)
T ss_pred EecCCcc----------------chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHH
Confidence 0111100 01234578999999999998887 6899999999999999987777643
No 445
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.91 E-value=6.3e-09 Score=89.89 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=81.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHH---HHhcCC--C
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA---HARRGA--P 183 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~---~~~~g~--~ 183 (255)
++||.|.+||||||+.+.|...+.+ ......++..|+|+.+.. ....+..... ..++.. |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~--------------~g~~v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR--------------EGIHPAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--------------cCCceEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence 5899999999999999999988841 112244588999876321 1111111111 123444 7
Q ss_pred CCCcHHHHHHHHHhhcCCCCCCCCCCCcc----------ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHG----------VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~l~~~~~~~~lS~G----------~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++.+.+.+.+.+..++.+.....|.|++- ...+..-. .+..+.+|||+||.+.++... ..++.+++|.
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~~-~~~lr~~~Dl 143 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVTE-GYNVAQHADL 143 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCcccccc-cHHHHHhCCe
Confidence 88888999999999999988888888541 11121111 134689999999999765421 1355555543
No 446
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.89 E-value=8.1e-10 Score=102.08 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=34.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (255)
+|++||+++++||+++|+|||||||||||+ +|++. |++|
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sG 59 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEG 59 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCC
Confidence 779999999999999999999999999999 66664 5554
No 447
>COG4240 Predicted kinase [General function prediction only]
Probab=98.88 E-value=2.9e-09 Score=89.06 Aligned_cols=125 Identities=32% Similarity=0.479 Sum_probs=91.3
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccC-CcccChHHHHHhcCC
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL-DAMEDPKEAHARRGA 182 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l-~~~e~~~~~~~~~g~ 182 (255)
-.+.-|+||.||.||||||+.-.|..++. ..| ....+. .++|++|+...+. ...++.......+|.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~----~kg--------~ert~~-lSLDDlYlthadrl~La~q~npllq~RGl 113 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLA----AKG--------LERTAT-LSLDDLYLTHADRLRLARQVNPLLQTRGL 113 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHH----Hhc--------ccceEE-eehhhhhcchHHHHHHHHhcCchhcccCC
Confidence 34567999999999999999999999984 111 123344 8999998653211 111111223445788
Q ss_pred CCCCcHHHHHHHHHhhcCCC-CCCCCCCCc----cccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 183 PWTFNPLLLLNCLKNLRNQG-SVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~----G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
|.+++.....++++.+.-+. .+.+|.|+. |...|..-......+.+|+|+|+.+.|..|
T Consensus 114 pGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 114 PGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 99999999999999887764 468889987 899997666666667999999999988654
No 448
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.85 E-value=7.6e-09 Score=96.64 Aligned_cols=127 Identities=19% Similarity=0.232 Sum_probs=75.3
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
++++.++.+++|.+++|+||||+||||++..|++.+. ...| ....+ ++..|.+. ..+.+.+..
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G--------~~kV~-LI~~Dt~R-----igA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG--------ASKVA-LLTTDSYR-----IGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC--------CCeEE-EEeCCccc-----hhHHHHHHH
Confidence 4456677788899999999999999999999999874 2332 12334 46777653 456677777
Q ss_pred HHHhcCCCCCC--cHHHHHHHHHhhcCCCCCCCCCCCccccchh---hhhhhhccCC-----cEEEEeCCCCCCCh
Q 025256 176 AHARRGAPWTF--NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQH-----KVVIVDGNYLFLDG 241 (255)
Q Consensus 176 ~~~~~g~~~~~--~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv---~~a~~l~~~~-----~ililDEp~~~LD~ 241 (255)
....++++... +.......+..+.-...+.+... |+.++. .....++.++ .+|++|..+.+.+.
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTa--Gr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l 381 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTI--GMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTL 381 (484)
T ss_pred HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCC--CcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHH
Confidence 77777764321 22222222333322233344443 433332 2222333332 68999998877553
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.85 E-value=2.3e-09 Score=90.79 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=33.8
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+-+|++|++++|++++|.||||+||||+++++++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 459999999999999999999999999999999986
No 450
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.85 E-value=1.3e-09 Score=98.57 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=85.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE------ecCCCCC--cCccCCcccChHHH
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL------PMDGFHL--YLSQLDAMEDPKEA 176 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i------~~d~~~~--~~~~l~~~e~~~~~ 176 (255)
.+|++.|++|.||-||||-+++++|-++ |.-|..-+ +++...++ .+.++.. ...++...-.+.+.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~----pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyv 170 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDN----PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYV 170 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCC----CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHH
Confidence 4699999999999999999999999997 77765211 11111100 0111100 00001100011111
Q ss_pred HH----hcC----C-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHH
Q 025256 177 HA----RRG----A-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (255)
Q Consensus 177 ~~----~~g----~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~ 245 (255)
.. ..+ . ....+.....++.+.+.+. .+..+..+|||+-||.++|.+.+..+|+.++|||-+.||...+.
T Consensus 171 d~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRL 250 (592)
T KOG0063|consen 171 DQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRL 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhh
Confidence 00 000 0 0000111222333333333 56678899999999999999999999999999999999999887
Q ss_pred HHHHHHHh
Q 025256 246 DVSSMFDE 253 (255)
Q Consensus 246 ~l~~ll~~ 253 (255)
.....|..
T Consensus 251 kaA~~IRs 258 (592)
T KOG0063|consen 251 KAAITIRS 258 (592)
T ss_pred hHHHHHHH
Confidence 77666654
No 451
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.80 E-value=8e-09 Score=95.25 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=86.6
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
+.++.+.+++.|.... .+++. .+.+.+|+.++|+|+||+|||||+++|++.. .++.+. +
T Consensus 129 ~~~~r~~i~~~l~TGi---raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~----------------~~~~gv-I 187 (432)
T PRK06793 129 HAFEREEITDVFETGI---KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNA----------------KADINV-I 187 (432)
T ss_pred CchheechhhccCCCC---EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccC----------------CCCeEE-E
Confidence 3466677888786432 25577 4999999999999999999999999999998 344454 4
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhc-------c
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVG-------L 225 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~-------~ 225 (255)
...|.. ..+..++.....+ .-++.. -......|.+++.|++.+.+.+ .
T Consensus 188 ~~iGer-------g~ev~e~~~~~l~---------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G 245 (432)
T PRK06793 188 SLVGER-------GREVKDFIRKELG---------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQG 245 (432)
T ss_pred EeCCCC-------cccHHHHHHHHhh---------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 444431 1111112111111 101110 1334577899999998766655 7
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll 251 (255)
++-++++|++|...|+. +++..++
T Consensus 246 ~~VLlilDslTr~a~A~--reisl~~ 269 (432)
T PRK06793 246 NNVLLMMDSVTRFADAR--RSVDIAV 269 (432)
T ss_pred CcEEEEecchHHHHHHH--HHHHHHh
Confidence 88999999999999984 5555444
No 452
>PRK15453 phosphoribulokinase; Provisional
Probab=98.77 E-value=2.8e-08 Score=86.50 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=73.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcC-ccCCcccChHH-HHHhcCC-
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKE-AHARRGA- 182 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~-~~l~~~e~~~~-~~~~~g~- 182 (255)
+.-+++|+|.+||||||+.+.|+..+.. ......++..|+|+.+. .++........ ...++..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~--------------~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf 69 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR--------------ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHF 69 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCC
Confidence 4568999999999999999999987740 11123457888887532 22221100000 0112334
Q ss_pred -CCCCcHHHHHHHHHhhcCCCCCCCCCCCc--cc---cchhhhh----hhhccCCcEEEEeCCCCCC
Q 025256 183 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GV---GDPVEDD----ILVGLQHKVVIVDGNYLFL 239 (255)
Q Consensus 183 -~~~~~~~~~~~~l~~l~l~~~~~~~~lS~--G~---~qrv~~a----~~l~~~~~ililDEp~~~L 239 (255)
|++.+.+.+.+.++.++.+.....+.|++ .+ ..+.... ..+..+.+|||+||.+.+.
T Consensus 70 ~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~ 136 (290)
T PRK15453 70 GPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGV 136 (290)
T ss_pred CCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccc
Confidence 77788888889999888766555555542 11 1111111 1233468999999998875
No 453
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.70 E-value=8.7e-08 Score=78.25 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=73.5
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHH--
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-- 178 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-- 178 (255)
|+++ -.|+.|+|.||+||||||..|+-...-. +..|.. +. +. +...+ -...+.......
T Consensus 33 LeF~-apIT~i~GENGsGKSTLLEaiA~~~~~n-~aGg~~n~~--------~~-~~~s~-------s~l~~~~k~~~~~k 94 (233)
T COG3910 33 LEFR-APITFITGENGSGKSTLLEAIAAGMGFN-AAGGGKNFK--------GE-LDASH-------SALVDYAKLHKRKK 94 (233)
T ss_pred cccc-CceEEEEcCCCccHHHHHHHHHhhcccc-ccCCCcCcC--------cc-ccccc-------chHHHhHHHhhcCC
Confidence 4454 3589999999999999999998776300 111111 00 00 00000 000011111000
Q ss_pred -hcCC-CCCCcHHHHHHHHHhhcCCCC---CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 179 -RRGA-PWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 179 -~~g~-~~~~~~~~~~~~l~~l~l~~~---~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
..|+ ........+...++.+.-..+ ......|+|+.=---+.+.+ ...-++|||||-++|.+.-+.++..++..
T Consensus 95 ~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~ 173 (233)
T COG3910 95 PPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRD 173 (233)
T ss_pred CCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHH
Confidence 0121 122222333334444432222 33457799987655555544 47889999999999999999998888865
Q ss_pred h
Q 025256 254 K 254 (255)
Q Consensus 254 ~ 254 (255)
.
T Consensus 174 l 174 (233)
T COG3910 174 L 174 (233)
T ss_pred H
Confidence 3
No 454
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=2.2e-08 Score=100.31 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=53.9
Q ss_pred HHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 192 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 192 ~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+.+..++++ .+..+.+|||||+||+.+|++|+.+| +++||||||++||+...+.+.++|.+.
T Consensus 468 l~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L 535 (924)
T TIGR00630 468 LGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL 535 (924)
T ss_pred HHhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 3445566665 36678899999999999999998875 899999999999999999999998764
No 455
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.68 E-value=2.2e-08 Score=100.46 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=54.4
Q ss_pred HHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.++.++++ .+..+..||+||+||+++|++|..+| +++||||||++||+...+.+.++|.+.
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L 537 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL 537 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH
Confidence 456666765 46788899999999999999999886 999999999999999999999998753
No 456
>PRK07667 uridine kinase; Provisional
Probab=98.67 E-value=3.9e-08 Score=81.69 Aligned_cols=107 Identities=16% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC--
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-- 183 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-- 183 (255)
..-+|||.|++||||||+.+.|...++ ..| . ...++..|+++.... .+...+..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~----~~~---------~-~~~~i~~Dd~~~~~~----------~~~~~~~~~~ 71 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK----QEG---------I-PFHIFHIDDYIVERN----------KRYHTGFEEW 71 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----hCC---------C-cEEEEEcCcccchhh----------hHHhcCCCch
Confidence 346899999999999999999999884 111 1 123478888754221 01111211
Q ss_pred -----CCCcHHHHH-HHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCC
Q 025256 184 -----WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 184 -----~~~~~~~~~-~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~ 237 (255)
..++...+. .++..+..+.....|.|+.-.+++..-... +.+++++|+|+|++
T Consensus 72 ~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~-~~~~~vvIvEG~~l 130 (193)
T PRK07667 72 YEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQ-IPIVGVIVIEGVFL 130 (193)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeecccccccccccee-cCCCCEEEEEehhh
Confidence 112333332 456667666677788888776655432212 34579999999995
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.63 E-value=1.6e-07 Score=81.03 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=29.6
Q ss_pred cceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 100 vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.=+.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 335788999999999999999999999999884
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.61 E-value=3e-07 Score=70.13 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=58.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCC
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~ 186 (255)
+..+.|+||+|+||||+++.|+..+. ...... +..+...... .. .. . ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---------------~~~~~~-~~~~~~~~~~------~~-~~-~-~~------ 50 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---------------PPGGGV-IYIDGEDILE------EV-LD-Q-LL------ 50 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---------------CCCCCE-EEECCEEccc------cC-HH-H-HH------
Confidence 67899999999999999999999984 221111 3333221100 00 00 0 00
Q ss_pred cHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 187 ~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~ 248 (255)
............+.+..+..++.+-..++++|++||+....+........
T Consensus 51 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 51 ------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred ------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 11111222334455555555666665567999999999999987665443
No 459
>PRK06696 uridine kinase; Validated
Probab=98.55 E-value=9.7e-08 Score=81.05 Aligned_cols=109 Identities=27% Similarity=0.357 Sum_probs=61.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcC----
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---- 181 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g---- 181 (255)
..-+|||.|++|||||||.+.|+..+. ..| .....+++|+|+.... .+...+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~----~~g----------~~v~~~~~Ddf~~~~~----------~r~~~~~~~~ 76 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK----KRG----------RPVIRASIDDFHNPRV----------IRYRRGRESA 76 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH----HcC----------CeEEEeccccccCCHH----------HHHHcCCCCh
Confidence 456999999999999999999999984 111 1223367899875321 111111
Q ss_pred --C-CCCCcHHHHHHHHHh-hcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCC
Q 025256 182 --A-PWTFNPLLLLNCLKN-LRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238 (255)
Q Consensus 182 --~-~~~~~~~~~~~~l~~-l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~ 238 (255)
+ ...++...+.+.+-. +.-+. ....+.++.-...+.......+...+++|+|+|++.
T Consensus 77 ~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~ 139 (223)
T PRK06696 77 EGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLL 139 (223)
T ss_pred hhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHh
Confidence 1 134455544433332 22221 233334555444433222223346789999999864
No 460
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.55 E-value=1.6e-07 Score=83.55 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=30.6
Q ss_pred cceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 100 vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++.++.|+.++|+||+|||||||++.|++++.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 567899999999999999999999999999983
No 461
>PRK13695 putative NTPase; Provisional
Probab=98.55 E-value=2.7e-08 Score=81.15 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=35.2
Q ss_pred CCCCccccchhhhhhhhccCCcEEEEeC--CCCCCChHHHHHHHHHH
Q 025256 207 PSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 207 ~~lS~G~~qrv~~a~~l~~~~~ililDE--p~~~LD~~~~~~l~~ll 251 (255)
..+|++++-+..+.+..+.+|+++|+|| |+..+|+...+.+.+++
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~ 123 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL 123 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH
Confidence 3578888888888877778999999999 66677766666666655
No 462
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.49 E-value=1.8e-07 Score=62.98 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.6
Q ss_pred cccceecCC-CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 98 SALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~vsl~i~~-Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++..+++.+ |+++.|.|||||||||++..|.-++-
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 456667765 57999999999999999999998883
No 463
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.49 E-value=1.2e-07 Score=79.64 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=37.6
Q ss_pred CCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 207 PSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 207 ~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
..+|.|+++.+.+...+.... .++++|||-++|.|..++.+.++|.+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~ 284 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKE 284 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHh
Confidence 356999999987776665444 89999999999999999999999864
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.49 E-value=1e-07 Score=78.60 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=34.4
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
.-+.+.+++|+.++|+||||||||||++.|+++++ |+.|.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~ 55 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERI 55 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence 45567789999999999999999999999999995 55554
No 465
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.48 E-value=6.3e-07 Score=73.32 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=37.1
Q ss_pred CCCCCCCCccccc------hhhhhhhhccCCcEEEEeCCCCCCC---hHHHHHHHHHHHh
Q 025256 203 SVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---GGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~~q------rv~~a~~l~~~~~ililDEp~~~LD---~~~~~~l~~ll~~ 253 (255)
+..+..+|+|+.+ ......+...+|+++|+|||++.+| ...+..+.+++..
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~ 125 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA 125 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence 3445577888887 4444444567899999999999999 6667777766644
No 466
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.47 E-value=3.5e-07 Score=78.07 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=64.5
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHH-HhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcC
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~-gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g 181 (255)
-+++|.++.|.|++|+|||||+..++ +.++ ....+.++..+.. ..+ .......++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---------------~g~~~~y~~~e~~--------~~~-~~~~~~~~g 76 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK---------------QGKKVYVITTENT--------SKS-YLKQMESVK 76 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh---------------CCCEEEEEEcCCC--------HHH-HHHHHHHCC
Confidence 47899999999999999999999874 3332 2334444444321 111 111112333
Q ss_pred CCCCCcHHHHHHHHHhhcCC-C-CCCCCCCCccccchhhhhhhhcc--CCcEEEEeCCCCCCChHHHHHHHHH
Q 025256 182 APWTFNPLLLLNCLKNLRNQ-G-SVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDVSSM 250 (255)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~l~-~-~~~~~~lS~G~~qrv~~a~~l~~--~~~ililDEp~~~LD~~~~~~l~~l 250 (255)
+. ...... ...+.+. . .......+.++.+.+.....++. +++++++|||++.+|......+.++
T Consensus 77 ~~----~~~~~~-~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~ 144 (234)
T PRK06067 77 ID----ISDFFL-WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNF 144 (234)
T ss_pred CC----hhHHHh-CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHH
Confidence 21 111100 0001110 0 01112345677788877777765 8999999999976554333444443
No 467
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.44 E-value=6.7e-07 Score=70.75 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++|.||||+||||+++.+++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999984
No 468
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.44 E-value=7.1e-07 Score=82.31 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=56.8
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (255)
+++|++++|+||||+||||+++.|++... -.. .+..+.++..|.+.+ ...+.........|++
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~---------~~~~v~~i~~d~~ri-----galEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRH---------GADKVALLTTDSYRI-----GGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---Hhc---------CCCeEEEEecCCcch-----hHHHHHHHHHHHcCCc
Confidence 46899999999999999999999999641 000 123344477777653 3445555566667764
Q ss_pred CC--CcHHHHHHHHHhhcCCCCCCCCCCCccccchh
Q 025256 184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV 217 (255)
Q Consensus 184 ~~--~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv 217 (255)
.. .+.......+..+.-...+.+.. .|+.+|.
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd 284 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRD 284 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcch
Confidence 32 23333444444443333333333 4777654
No 469
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=1.6e-06 Score=78.84 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=33.4
Q ss_pred cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 94 i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.++++.++.+++|.+++|+||||+||||++..|++..
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33557777889999999999999999999999999875
No 470
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.40 E-value=1.3e-06 Score=72.94 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.|+||+||||||+++.|.+.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999998884
No 471
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.40 E-value=4.8e-07 Score=83.75 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=50.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
.+.++.+++++.|... +.+++.++ .+.+|++++|+||||+|||||+++|+++.+ |+.|.
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gv 195 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVV 195 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeee
Confidence 4578999999999754 23667775 899999999999999999999999999986 77765
No 472
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.38 E-value=3.2e-06 Score=73.27 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=31.4
Q ss_pred cccccceecCCCe-EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Ge-iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++..++..++++. ++.|.||+|+|||||++.+...+.
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 5577777777655 899999999999999999998873
No 473
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=4.3e-06 Score=82.02 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=54.8
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
++++.++.+++|++++++||||+||||++..|++.+. ...| .....++..|.+.+ ...+....
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~Ri-----gA~eQL~~ 236 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFRI-----GALEQLRI 236 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccch-----HHHHHHHH
Confidence 4567788888899999999999999999999999873 2222 11223355555432 23344455
Q ss_pred HHHhcCCCC--CCcHHHHHHHHHhhc
Q 025256 176 AHARRGAPW--TFNPLLLLNCLKNLR 199 (255)
Q Consensus 176 ~~~~~g~~~--~~~~~~~~~~l~~l~ 199 (255)
.....+++. ..+...+.+.++.+.
T Consensus 237 ~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 237 YGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred HHHhCCCCccccCCHHHHHHHHHHhc
Confidence 555666532 224444555565544
No 474
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.26 E-value=1.1e-06 Score=80.20 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=46.9
Q ss_pred eEEEccceeecccccccccccc-----------ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~-----------~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-++++||+..|++. + ++|. |+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~e--r-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNE--R-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCc--c-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 58999999999763 2 2565 9999999999999999999999999999999874
No 475
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.26 E-value=6.3e-06 Score=73.71 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=26.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|++++|+||||+||||++..|++.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5799999999999999999999999985
No 476
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.26 E-value=7.2e-06 Score=79.55 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=64.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~ 185 (255)
....++|+||||+|||||++++.+... +..|..+ ..... .+.+++..+.. +.. ......++...+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~---~~~~~~~-----~~~~~-fv~i~~~~l~~---d~~---~i~~~llg~~~~ 238 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAK---KLKHTPF-----AEDAP-FVEVDGTTLRW---DPR---EVTNPLLGSVHD 238 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhh---hccCCcc-----cCCCC-eEEEechhccC---CHH---HHhHHhcCCccH
Confidence 345799999999999999999999885 3333200 01122 25555543210 000 000111221110
Q ss_pred CcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 186 FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 186 ~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.........++..++. ....+..+|+| +|++|| +..||+..+..+.+++++
T Consensus 239 ~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 239 PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 0011122334444432 22233455555 999999 789999999999999865
No 477
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.26 E-value=7.7e-07 Score=72.91 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+|++++|+|+||||||||+++|++++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999999984
No 478
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.25 E-value=8.1e-07 Score=83.73 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=48.1
Q ss_pred EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+.|+++.|+... +++++++.+..|+.++|+||||+|||||++.|.|++. |.+|+
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~ 240 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNE 240 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCc
Confidence 358889998744 6699999999999999999999999999999999997 77776
No 479
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.23 E-value=9.1e-07 Score=81.79 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=35.5
Q ss_pred cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 94 i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 3478999 9999999999999999999999999999885
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.23 E-value=7.9e-07 Score=73.30 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
|++++|+||||||||||+++|++.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999874
No 481
>PRK08233 hypothetical protein; Provisional
Probab=98.22 E-value=7.7e-06 Score=66.54 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++.+|+|.|++|||||||++.|+..+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 46799999999999999999999987
No 482
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.21 E-value=2.7e-06 Score=70.26 Aligned_cols=119 Identities=27% Similarity=0.338 Sum_probs=78.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH--------HHHHh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK--------EAHAR 179 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~--------~~~~~ 179 (255)
-++++.||.|||||||.-.|--.+.+ ..-+ ....+. +++|+|++.. .+..+ .....
T Consensus 32 l~igfSgPQGsGKstl~~ald~~lt~--Ky~~--------E~s~~~-~SvDDFYLTh-----e~Q~eL~k~npnN~Llq~ 95 (282)
T KOG2878|consen 32 LVIGFSGPQGSGKSTLVFALDYKLTK--KYIQ--------EYSSAT-ISVDDFYLTH-----EGQAELRKKNPNNALLQY 95 (282)
T ss_pred EEEEecCCCCCCceeehhhhHHHHHH--Hhcc--------ccceEE-EEecceeeec-----hhHHHHHhhCCCChhhcc
Confidence 38999999999999998877665531 0001 123454 8999998642 22222 22345
Q ss_pred cCCCCCCcHHHHHHHHHhhcCC----CCCCCCCCC----ccccchhhhhhhh-ccCCcEEEEeCCCCCCChH
Q 025256 180 RGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFD----HGVGDPVEDDILV-GLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 180 ~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS----~G~~qrv~~a~~l-~~~~~ililDEp~~~LD~~ 242 (255)
+|.+..++.....++|+.+.-. ..+.+|.|+ +|...|..-..-. +.+-+++|+|+.+.|..|.
T Consensus 96 RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl 167 (282)
T KOG2878|consen 96 RGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPL 167 (282)
T ss_pred CCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEeccccccccc
Confidence 7788888888888888866432 346677765 4666776544433 2356899999999986653
No 483
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.18 E-value=9.7e-06 Score=69.45 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
|.+..|+||.|+|||||+-.++--+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH
Confidence 6788999999999999999887654
No 484
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.17 E-value=1.1e-05 Score=72.99 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=25.8
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..++.++.|.||+||||||+++.|.+.+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45688999999999999999999999874
No 485
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.16 E-value=2e-06 Score=79.60 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=48.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+.++.+.++..|... +.+++++ +.+.+|+.++|+|+||+|||||+++|+++.. ++.|.
T Consensus 128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~v 185 (433)
T PRK07594 128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNV 185 (433)
T ss_pred CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEE
Confidence 457778888888543 2377999 9999999999999999999999999999986 66654
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.14 E-value=1.9e-06 Score=71.83 Aligned_cols=27 Identities=41% Similarity=0.614 Sum_probs=25.8
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++|++++|+||+|||||||++.|++.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999987
No 487
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.13 E-value=2.7e-06 Score=76.07 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=36.9
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+++.+ +.+.+|++++|+|+||+|||||+++|+++.. |+.|.
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~v 99 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNV 99 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence 77999 9999999999999999999999999999986 55443
No 488
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.13 E-value=3.1e-05 Score=67.67 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.1
Q ss_pred ccccceecC-------CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 97 TSALASNVN-------VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 97 l~~vsl~i~-------~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++++++.++ +|++++++||||+||||++++|++.+.
T Consensus 58 ~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 58 LEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred hcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 466666665 458999999999999999999999874
No 489
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.09 E-value=2.4e-06 Score=81.90 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=43.8
Q ss_pred CCCCCCccccchhhhhhhhc----------cCCcEEEEeCCC-CCCChHHHHHHHHHHHh
Q 025256 205 YAPSFDHGVGDPVEDDILVG----------LQHKVVIVDGNY-LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 205 ~~~~lS~G~~qrv~~a~~l~----------~~~~ililDEp~-~~LD~~~~~~l~~ll~~ 253 (255)
.+..||+||+||+++|++++ .+|+++|+|||| ++||+..+..+.++|.+
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~ 524 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS 524 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence 34689999999999998887 589999999998 78999999999998875
No 490
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.09 E-value=1.8e-05 Score=60.77 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+..+.|.||+|+|||||++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999999987
No 491
>PRK08149 ATP synthase SpaL; Validated
Probab=98.09 E-value=3.1e-06 Score=78.16 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=34.6
Q ss_pred ccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 95 ~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 377999 9999999999999999999999999999875
No 492
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.08 E-value=3.4e-06 Score=78.39 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=34.3
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++++ |.+.+|++++|+|+||+|||||+++|+++..
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~ 183 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS 183 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 67999 9999999999999999999999999999985
No 493
>PRK06547 hypothetical protein; Provisional
Probab=98.07 E-value=1.7e-05 Score=64.70 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..-.+|+|.|++|||||||.+.|+..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999999999999876
No 494
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.07 E-value=3.2e-06 Score=68.99 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
|++++|+||||||||||++.|++++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999873
No 495
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.04 E-value=3e-06 Score=69.09 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
|++++|+||||||||||++.|++.+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 7899999999999999999999976
No 496
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.04 E-value=3.9e-06 Score=86.02 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=46.8
Q ss_pred CCCCCCCCCCccccchhhhhhhhcc--------CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 201 QGSVYAPSFDHGVGDPVEDDILVGL--------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 201 ~~~~~~~~lS~G~~qrv~~a~~l~~--------~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+....+..|||||+++++++++|+. +|++||+||||.+||+.....++++|...
T Consensus 942 ~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l 1003 (1047)
T PRK10246 942 DAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL 1003 (1047)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 3456778999999999999999985 89999999999999999999999988653
No 497
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=4.3e-06 Score=85.83 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=46.5
Q ss_pred CCCCCCCCCccccchhhhhhhhcc----------CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 202 GSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 202 ~~~~~~~lS~G~~qrv~~a~~l~~----------~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
....+..|||||++|+++|++|+. +|++||+||||++||+.....++++|...
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l 1006 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI 1006 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 445678999999999999999975 79999999999999999999999988653
No 498
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.03 E-value=7.7e-06 Score=82.11 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.6
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-+|+.+. ..+.++.|.|||.+||||+||.++...
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ 631 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIV 631 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHH
Confidence 3788887 668899999999999999999988764
No 499
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.00 E-value=6.4e-06 Score=76.45 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=37.9
Q ss_pred cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 94 i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+.+++++ +.+.+|++++|+|+||+|||||+++|+++.. ++.|.
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~v 193 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNV 193 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEE
Confidence 3477999 9999999999999999999999999999985 55554
No 500
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.99 E-value=6.6e-06 Score=76.25 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=37.3
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+++++ |.+.+|++++|+|+||+|||||+++|+++.. |+.|.
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~v 175 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNV 175 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence 77999 9999999999999999999999999999986 66554
Done!