Query 025256
Match_columns 255
No_of_seqs 406 out of 2284
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 06:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 7.2E-37 2.5E-41 274.8 12.5 175 74-254 21-209 (366)
2 2pcj_A ABC transporter, lipopr 100.0 8.1E-37 2.8E-41 258.6 10.8 169 75-253 2-185 (224)
3 3rlf_A Maltose/maltodextrin im 100.0 1.7E-36 5.9E-41 273.8 11.1 170 75-254 1-179 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-36 4E-41 273.1 9.5 168 76-253 3-183 (359)
5 3tif_A Uncharacterized ABC tra 100.0 2.9E-36 1E-40 256.9 10.9 171 77-253 1-190 (235)
6 1vpl_A ABC transporter, ATP-bi 100.0 2.8E-36 9.7E-41 260.0 10.3 171 73-253 11-191 (256)
7 3gfo_A Cobalt import ATP-bindi 100.0 2.3E-36 7.7E-41 263.1 9.5 169 76-253 6-188 (275)
8 2olj_A Amino acid ABC transpor 100.0 2.5E-36 8.7E-41 261.2 9.6 169 75-253 22-204 (263)
9 1g6h_A High-affinity branched- 100.0 8.7E-36 3E-40 257.2 9.5 169 75-253 5-198 (257)
10 2it1_A 362AA long hypothetical 100.0 1.5E-35 5.1E-40 266.7 11.1 169 75-253 1-178 (362)
11 2yyz_A Sugar ABC transporter, 100.0 1E-35 3.5E-40 267.5 9.4 169 75-253 1-178 (359)
12 1b0u_A Histidine permease; ABC 100.0 1.4E-35 4.7E-40 256.6 9.8 168 76-253 5-198 (262)
13 1sgw_A Putative ABC transporte 100.0 2.7E-35 9.4E-40 247.4 11.3 165 76-253 9-178 (214)
14 1z47_A CYSA, putative ABC-tran 100.0 2.1E-35 7.1E-40 264.9 11.1 169 75-253 12-190 (355)
15 4g1u_C Hemin import ATP-bindin 100.0 2.8E-35 9.5E-40 255.2 11.5 167 75-253 9-192 (266)
16 1g29_1 MALK, maltose transport 100.0 1.7E-35 5.8E-40 267.4 10.2 169 75-253 1-184 (372)
17 1v43_A Sugar-binding transport 100.0 1.9E-35 6.5E-40 266.9 10.2 169 75-253 9-186 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 5.8E-35 2E-39 249.6 10.4 167 76-253 5-184 (240)
19 2ihy_A ABC transporter, ATP-bi 100.0 3.6E-35 1.2E-39 256.1 8.5 170 76-253 20-206 (279)
20 1oxx_K GLCV, glucose, ABC tran 100.0 3.4E-35 1.2E-39 263.8 8.0 171 75-253 1-185 (353)
21 2nq2_C Hypothetical ABC transp 100.0 1.5E-34 5.2E-39 248.8 10.3 164 76-253 3-173 (253)
22 2yz2_A Putative ABC transporte 100.0 2E-34 6.9E-39 249.8 11.0 171 77-253 2-183 (266)
23 3d31_A Sulfate/molybdate ABC t 100.0 5.3E-34 1.8E-38 255.4 12.6 163 77-253 1-172 (348)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 2.5E-34 8.7E-39 247.0 8.1 170 75-254 1-189 (250)
25 2onk_A Molybdate/tungstate ABC 100.0 2.6E-34 9E-39 245.5 6.6 162 77-253 1-171 (240)
26 2zu0_C Probable ATP-dependent 100.0 1.7E-33 5.7E-38 244.2 9.5 170 75-254 18-210 (267)
27 2pjz_A Hypothetical protein ST 100.0 7.2E-33 2.5E-37 239.6 11.6 165 77-254 1-174 (263)
28 1mv5_A LMRA, multidrug resista 100.0 1.3E-32 4.6E-37 235.4 10.9 161 77-253 1-184 (243)
29 2cbz_A Multidrug resistance-as 100.0 6.3E-33 2.1E-37 236.6 8.8 160 75-252 1-171 (237)
30 2ff7_A Alpha-hemolysin translo 100.0 1.7E-32 5.8E-37 235.3 11.3 160 77-253 7-190 (247)
31 2ixe_A Antigen peptide transpo 100.0 3.8E-33 1.3E-37 242.4 5.6 169 76-254 15-202 (271)
32 2pze_A Cystic fibrosis transme 100.0 4.6E-31 1.6E-35 223.9 12.5 155 76-251 5-173 (229)
33 2qi9_C Vitamin B12 import ATP- 100.0 1.6E-31 5.5E-36 229.4 9.8 157 77-253 4-178 (249)
34 2ghi_A Transport protein; mult 100.0 1.7E-31 5.8E-36 230.7 9.1 164 76-254 16-201 (260)
35 3nh6_A ATP-binding cassette SU 100.0 3E-31 1E-35 233.9 10.7 162 76-253 52-235 (306)
36 3gd7_A Fusion complex of cysti 100.0 3.1E-31 1.1E-35 240.7 9.1 161 76-253 18-200 (390)
37 3b5x_A Lipid A export ATP-bind 100.0 3.2E-29 1.1E-33 238.9 10.1 165 76-254 340-526 (582)
38 3b60_A Lipid A export ATP-bind 100.0 9.8E-29 3.3E-33 235.5 12.6 164 76-253 340-525 (582)
39 2yl4_A ATP-binding cassette SU 100.0 1.1E-28 3.9E-33 235.6 11.7 163 78-253 342-528 (595)
40 2bbs_A Cystic fibrosis transme 100.0 9.7E-29 3.3E-33 216.4 9.6 150 76-251 39-202 (290)
41 4a82_A Cystic fibrosis transme 99.9 1.8E-28 6E-33 233.6 9.1 162 77-253 339-522 (578)
42 3ozx_A RNAse L inhibitor; ATP 99.9 7.5E-28 2.6E-32 227.0 11.9 162 75-254 267-431 (538)
43 3bk7_A ABC transporter ATP-bin 99.9 1.4E-27 4.6E-32 228.1 13.7 159 76-253 356-516 (607)
44 3qf4_A ABC transporter, ATP-bi 99.9 3.3E-28 1.1E-32 232.1 9.4 163 76-253 340-524 (587)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 1.8E-27 6E-32 224.7 12.8 160 75-253 285-446 (538)
46 3qf4_B Uncharacterized ABC tra 99.9 4.9E-28 1.7E-32 231.3 9.0 161 77-253 354-536 (598)
47 3bk7_A ABC transporter ATP-bin 99.9 2.5E-27 8.7E-32 226.2 10.4 160 76-253 82-273 (607)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 8.3E-27 2.8E-31 220.1 10.4 159 78-253 21-203 (538)
49 3j16_B RLI1P; ribosome recycli 99.9 2.4E-25 8.2E-30 212.4 15.4 156 81-253 350-512 (608)
50 4f4c_A Multidrug resistance pr 99.9 2.6E-26 9E-31 235.8 9.4 164 77-253 1076-1262(1321)
51 2iw3_A Elongation factor 3A; a 99.9 7E-26 2.4E-30 224.2 9.9 170 75-253 669-946 (986)
52 3j16_B RLI1P; ribosome recycli 99.9 1.2E-25 4.1E-30 214.5 10.7 164 82-254 82-267 (608)
53 3g5u_A MCG1178, multidrug resi 99.9 2.5E-25 8.4E-30 228.1 13.3 164 77-253 1030-1216(1284)
54 3g5u_A MCG1178, multidrug resi 99.9 2.1E-25 7E-30 228.7 11.2 163 77-253 387-571 (1284)
55 2iw3_A Elongation factor 3A; a 99.9 4.4E-25 1.5E-29 218.5 12.4 156 77-253 435-593 (986)
56 4f4c_A Multidrug resistance pr 99.9 6E-25 2.1E-29 225.8 10.7 163 77-253 415-599 (1321)
57 3ux8_A Excinuclease ABC, A sub 99.9 1.7E-24 5.9E-29 209.3 10.8 168 81-253 19-249 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.9 6.9E-24 2.3E-28 200.0 12.3 159 81-254 3-184 (538)
59 3aez_A Pantothenate kinase; tr 99.9 2E-25 6.7E-30 197.4 -0.2 142 77-240 43-208 (312)
60 3ux8_A Excinuclease ABC, A sub 99.9 4.2E-22 1.4E-26 192.6 10.2 64 191-254 523-592 (670)
61 3b85_A Phosphate starvation-in 99.8 1.1E-22 3.6E-27 170.0 1.6 128 85-253 8-145 (208)
62 2npi_A Protein CLP1; CLP1-PCF1 99.8 8.6E-25 2.9E-29 202.5 -12.6 159 75-253 116-286 (460)
63 2vf7_A UVRA2, excinuclease ABC 99.8 8.4E-21 2.9E-25 186.2 9.1 65 190-254 709-779 (842)
64 1tq4_A IIGP1, interferon-induc 99.8 2.3E-22 7.9E-27 183.6 -4.0 141 96-253 38-211 (413)
65 4gp7_A Metallophosphoesterase; 99.8 1.1E-21 3.6E-26 158.7 0.0 46 207-252 82-143 (171)
66 2r6f_A Excinuclease ABC subuni 99.8 7.1E-20 2.4E-24 180.5 12.4 64 191-254 825-894 (972)
67 2ygr_A Uvrabc system protein A 99.8 2.3E-19 8E-24 177.4 15.2 64 191-254 843-912 (993)
68 3pih_A Uvrabc system protein A 99.8 3.3E-19 1.1E-23 176.3 12.9 66 189-254 783-854 (916)
69 4aby_A DNA repair protein RECN 99.8 7.7E-20 2.6E-24 166.8 6.9 46 209-254 296-343 (415)
70 2jeo_A Uridine-cytidine kinase 99.8 9.3E-20 3.2E-24 155.3 6.9 133 96-242 14-149 (245)
71 2v9p_A Replication protein E1; 99.8 4.9E-21 1.7E-25 168.3 -2.8 128 77-248 101-233 (305)
72 1ye8_A Protein THEP1, hypothet 99.7 5.5E-20 1.9E-24 149.9 -2.2 51 203-253 71-128 (178)
73 1e69_A Chromosome segregation 99.7 2.2E-17 7.6E-22 146.2 8.7 50 205-254 216-269 (322)
74 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 7.4E-17 2.5E-21 145.3 11.4 51 204-254 275-331 (365)
75 3sop_A Neuronal-specific septi 99.7 2.3E-17 7.7E-22 142.9 4.1 127 109-249 4-136 (270)
76 3b9q_A Chloroplast SRP recepto 99.7 4E-18 1.4E-22 149.9 -1.2 125 97-244 90-238 (302)
77 3asz_A Uridine kinase; cytidin 99.7 5.9E-18 2E-22 140.3 -0.4 129 104-252 3-144 (211)
78 1z6g_A Guanylate kinase; struc 99.7 2E-18 6.7E-23 144.8 -4.0 143 96-252 12-171 (218)
79 1sq5_A Pantothenate kinase; P- 99.6 9.2E-18 3.2E-22 147.9 -0.4 142 77-240 37-198 (308)
80 2pt7_A CAG-ALFA; ATPase, prote 99.6 3.6E-17 1.2E-21 145.5 2.6 92 96-237 160-251 (330)
81 3tqc_A Pantothenate kinase; bi 99.6 2.4E-18 8.1E-23 152.3 -5.1 139 83-241 66-211 (321)
82 1odf_A YGR205W, hypothetical 3 99.6 1.2E-16 4.2E-21 139.6 4.7 125 104-242 28-168 (290)
83 2og2_A Putative signal recogni 99.6 6.3E-17 2.1E-21 145.2 0.7 124 98-244 148-295 (359)
84 1pui_A ENGB, probable GTP-bind 99.6 1.1E-16 3.8E-21 131.9 1.8 166 76-253 2-195 (210)
85 2o8b_B DNA mismatch repair pro 99.6 5.8E-16 2E-20 155.2 4.0 134 76-253 749-896 (1022)
86 2obl_A ESCN; ATPase, hydrolase 99.6 5E-16 1.7E-20 139.0 2.8 146 76-253 44-206 (347)
87 3c8u_A Fructokinase; YP_612366 99.6 2.2E-16 7.5E-21 131.1 -0.2 123 104-250 19-147 (208)
88 3thx_B DNA mismatch repair pro 99.6 2.4E-16 8.1E-21 156.1 -0.7 117 96-252 662-779 (918)
89 2dpy_A FLII, flagellum-specifi 99.5 1.8E-16 6.2E-21 145.9 -2.1 146 76-254 130-294 (438)
90 1tf7_A KAIC; homohexamer, hexa 99.5 1.7E-15 5.9E-20 142.5 4.0 139 77-253 257-402 (525)
91 2eyu_A Twitching motility prot 99.5 2.9E-15 9.9E-20 129.0 4.7 113 77-250 5-119 (261)
92 1cr0_A DNA primase/helicase; R 99.5 6.3E-15 2.2E-19 128.5 6.7 37 96-132 24-60 (296)
93 2qnr_A Septin-2, protein NEDD5 99.5 5.7E-16 1.9E-20 136.0 -0.7 138 81-244 2-146 (301)
94 2i3b_A HCR-ntpase, human cance 99.5 1.1E-16 3.6E-21 131.6 -6.4 46 208-253 83-134 (189)
95 3szr_A Interferon-induced GTP- 99.5 3.3E-16 1.1E-20 149.7 -4.2 153 76-253 9-179 (608)
96 3qkt_A DNA double-strand break 99.5 6.9E-14 2.4E-18 124.6 10.7 50 204-253 244-299 (339)
97 2ga8_A Hypothetical 39.9 kDa p 99.5 2.9E-15 1E-19 133.5 1.7 157 96-252 11-285 (359)
98 3thx_A DNA mismatch repair pro 99.5 3.9E-14 1.3E-18 140.6 8.9 115 96-252 651-768 (934)
99 1ewq_A DNA mismatch repair pro 99.5 4.5E-14 1.5E-18 137.8 8.0 112 96-252 568-685 (765)
100 1znw_A Guanylate kinase, GMP k 99.5 6.9E-17 2.4E-21 134.0 -10.2 34 96-131 11-44 (207)
101 2qag_C Septin-7; cell cycle, c 99.5 3.9E-14 1.3E-18 129.5 6.5 140 76-244 10-158 (418)
102 2o5v_A DNA replication and rep 99.5 3.7E-14 1.3E-18 127.3 6.0 46 208-253 265-319 (359)
103 2ehv_A Hypothetical protein PH 99.5 2.1E-15 7E-20 127.5 -2.8 49 76-131 5-56 (251)
104 1htw_A HI0065; nucleotide-bind 99.4 1.6E-14 5.6E-19 115.2 2.1 59 78-144 8-67 (158)
105 1nlf_A Regulatory protein REPA 99.4 3E-13 1E-17 117.0 8.7 131 103-251 26-163 (279)
106 4a74_A DNA repair and recombin 99.4 1.9E-13 6.5E-18 113.9 5.2 113 103-242 21-141 (231)
107 1tf7_A KAIC; homohexamer, hexa 99.4 3.5E-14 1.2E-18 133.5 -0.1 144 77-254 12-171 (525)
108 2w0m_A SSO2452; RECA, SSPF, un 99.4 6.5E-14 2.2E-18 116.6 1.5 134 96-253 11-152 (235)
109 1wb9_A DNA mismatch repair pro 99.4 1.5E-13 5.2E-18 134.7 2.5 116 96-252 597-713 (800)
110 3jvv_A Twitching mobility prot 99.3 1.7E-12 5.9E-17 116.3 7.2 37 96-132 105-148 (356)
111 1pzn_A RAD51, DNA repair and r 99.3 6.9E-13 2.4E-17 118.7 4.5 121 96-242 119-247 (349)
112 1rj9_A FTSY, signal recognitio 99.3 3.8E-13 1.3E-17 118.2 2.4 32 106-140 101-132 (304)
113 1lw7_A Transcriptional regulat 99.3 1.1E-13 3.7E-18 124.4 -2.2 133 97-252 158-312 (365)
114 1p9r_A General secretion pathw 99.3 2.6E-13 9E-18 124.0 -1.3 142 77-232 143-315 (418)
115 2f1r_A Molybdopterin-guanine d 99.3 9E-13 3.1E-17 106.4 1.6 105 108-229 3-124 (171)
116 2bbw_A Adenylate kinase 4, AK4 99.2 4.7E-14 1.6E-18 119.8 -8.0 42 205-253 149-195 (246)
117 2cvh_A DNA repair and recombin 99.2 2.8E-11 9.5E-16 100.0 8.4 110 96-242 8-121 (220)
118 3ec2_A DNA replication protein 99.2 2.4E-11 8.4E-16 97.9 7.0 32 101-132 32-63 (180)
119 1ls1_A Signal recognition part 99.2 1.7E-11 5.9E-16 107.1 6.1 131 78-253 77-208 (295)
120 2gza_A Type IV secretion syste 99.2 9.1E-12 3.1E-16 111.9 3.8 54 79-132 137-200 (361)
121 2qag_B Septin-6, protein NEDD5 99.2 4.8E-11 1.7E-15 109.0 8.4 157 76-253 15-203 (427)
122 2kjq_A DNAA-related protein; s 99.1 7.8E-11 2.7E-15 92.7 7.4 32 96-132 30-61 (149)
123 1zp6_A Hypothetical protein AT 99.1 1.4E-11 4.7E-16 99.9 2.9 29 103-131 5-33 (191)
124 1s96_A Guanylate kinase, GMP k 99.1 4.2E-11 1.4E-15 100.3 5.7 31 102-132 11-41 (219)
125 3euj_A Chromosome partition pr 99.1 5.4E-11 1.9E-15 110.3 6.5 45 96-144 19-64 (483)
126 2qm8_A GTPase/ATPase; G protei 99.1 5.1E-12 1.7E-16 112.5 -0.6 60 74-140 26-85 (337)
127 1vma_A Cell division protein F 99.1 1.2E-10 4.1E-15 102.3 7.7 99 99-237 96-197 (306)
128 2ewv_A Twitching motility prot 99.1 1.1E-10 3.6E-15 105.3 7.2 35 96-132 127-161 (372)
129 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 4.2E-11 1.4E-15 94.3 3.7 51 203-253 52-108 (148)
130 3e70_C DPA, signal recognition 99.1 3.5E-12 1.2E-16 113.2 -3.0 116 103-237 125-254 (328)
131 1in4_A RUVB, holliday junction 99.0 1.6E-12 5.4E-17 115.4 -7.1 60 77-140 18-85 (334)
132 1udx_A The GTP-binding protein 99.0 1.1E-12 3.8E-17 119.8 -8.3 129 98-244 148-284 (416)
133 2x8a_A Nuclear valosin-contain 99.0 9.5E-11 3.3E-15 101.3 1.7 35 96-132 35-69 (274)
134 3nwj_A ATSK2; P loop, shikimat 99.0 7.7E-11 2.6E-15 100.6 1.0 53 76-132 16-73 (250)
135 1n0w_A DNA repair protein RAD5 99.0 1.7E-09 5.7E-14 90.6 8.7 111 103-242 20-135 (243)
136 2rcn_A Probable GTPase ENGC; Y 98.9 5.9E-11 2E-15 106.2 -1.2 112 97-224 206-329 (358)
137 3lnc_A Guanylate kinase, GMP k 98.9 3.5E-10 1.2E-14 94.8 2.8 35 97-131 17-52 (231)
138 3kta_B Chromosome segregation 98.9 1.3E-09 4.4E-14 87.9 4.8 51 204-254 60-114 (173)
139 2yv5_A YJEQ protein; hydrolase 98.9 1E-09 3.6E-14 96.1 4.6 115 102-221 160-300 (302)
140 1iy2_A ATP-dependent metallopr 98.9 6.6E-11 2.3E-15 102.0 -3.9 48 78-131 50-97 (278)
141 3tr0_A Guanylate kinase, GMP k 98.9 1.3E-09 4.4E-14 89.0 4.0 31 101-131 1-31 (205)
142 3pih_A Uvrabc system protein A 98.8 2.5E-09 8.7E-14 105.9 6.2 64 191-254 444-512 (916)
143 3k1j_A LON protease, ATP-depen 98.8 2.4E-09 8.1E-14 102.2 5.5 162 80-253 37-227 (604)
144 2r6f_A Excinuclease ABC subuni 98.8 3.1E-09 1.1E-13 105.1 5.2 98 155-253 439-551 (972)
145 2yhs_A FTSY, cell division pro 98.8 2.5E-09 8.4E-14 99.2 4.2 35 98-132 284-318 (503)
146 1sxj_E Activator 1 40 kDa subu 98.8 1.9E-08 6.5E-13 89.0 9.2 30 223-253 131-160 (354)
147 2px0_A Flagellar biosynthesis 98.8 7.2E-09 2.5E-13 90.5 6.1 28 105-132 103-130 (296)
148 1rz3_A Hypothetical protein rb 98.7 2.9E-09 1E-13 87.4 2.4 30 103-132 18-47 (201)
149 3lda_A DNA repair protein RAD5 98.7 1.3E-08 4.3E-13 92.5 6.6 111 103-242 174-289 (400)
150 3kta_A Chromosome segregation 98.7 1.3E-08 4.3E-13 81.8 5.7 39 98-140 18-56 (182)
151 1qhl_A Protein (cell division 98.7 9.2E-10 3.2E-14 92.6 -1.4 53 77-144 9-62 (227)
152 2qt1_A Nicotinamide riboside k 98.7 2.9E-08 9.9E-13 81.4 7.6 33 99-131 13-45 (207)
153 1oix_A RAS-related protein RAB 98.7 3.3E-09 1.1E-13 86.0 1.6 38 214-253 151-188 (191)
154 3uie_A Adenylyl-sulfate kinase 98.7 6E-09 2.1E-13 85.3 3.2 47 81-131 3-49 (200)
155 2ygr_A Uvrabc system protein A 98.7 1.4E-08 4.8E-13 100.8 6.3 61 193-253 503-568 (993)
156 2vf7_A UVRA2, excinuclease ABC 98.7 1.6E-08 5.5E-13 99.4 6.4 62 193-254 361-427 (842)
157 4ad8_A DNA repair protein RECN 98.6 2.4E-08 8.1E-13 93.6 4.8 49 206-254 394-445 (517)
158 3vaa_A Shikimate kinase, SK; s 98.6 2.2E-08 7.6E-13 81.8 4.0 37 96-132 14-50 (199)
159 2f9l_A RAB11B, member RAS onco 98.6 4.7E-08 1.6E-12 79.4 5.9 36 216-253 129-164 (199)
160 2oap_1 GSPE-2, type II secreti 98.6 8E-09 2.7E-13 96.7 1.0 42 96-140 249-290 (511)
161 1lvg_A Guanylate kinase, GMP k 98.6 2E-08 6.8E-13 82.3 3.2 27 105-131 2-28 (198)
162 2j41_A Guanylate kinase; GMP, 98.6 2.6E-08 8.7E-13 81.3 3.8 34 103-139 2-35 (207)
163 4eun_A Thermoresistant glucoki 98.6 5.9E-08 2E-12 79.3 5.4 30 102-131 24-53 (200)
164 3a00_A Guanylate kinase, GMP k 98.5 2.8E-08 9.7E-13 80.4 3.1 26 107-132 1-26 (186)
165 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 7E-09 2.4E-13 93.9 -1.5 28 103-130 16-43 (392)
166 1kgd_A CASK, peripheral plasma 98.5 8.9E-08 3.1E-12 77.0 3.9 26 106-131 4-29 (180)
167 1u0l_A Probable GTPase ENGC; p 98.5 4.4E-08 1.5E-12 85.5 2.1 37 102-141 164-200 (301)
168 1ixz_A ATP-dependent metallopr 98.5 2.9E-08 9.8E-13 84.0 0.8 48 78-131 26-73 (254)
169 2ce7_A Cell division protein F 98.4 1.1E-07 3.8E-12 88.1 3.8 48 79-132 27-74 (476)
170 1svm_A Large T antigen; AAA+ f 98.4 1.2E-07 4.1E-12 85.4 3.1 36 96-131 158-193 (377)
171 1w1w_A Structural maintenance 98.4 2E-07 7E-12 85.1 4.1 46 208-253 333-382 (430)
172 2dr3_A UPF0273 protein PH0284; 98.4 4.8E-07 1.6E-11 75.5 6.0 36 96-131 11-47 (247)
173 1t9h_A YLOQ, probable GTPase E 98.4 4.9E-08 1.7E-12 85.6 -0.2 37 102-141 168-204 (307)
174 2r6a_A DNAB helicase, replicat 98.3 4.4E-07 1.5E-11 83.5 6.1 37 96-132 192-228 (454)
175 1w1w_A Structural maintenance 98.3 3.9E-07 1.3E-11 83.2 5.3 46 77-132 6-51 (430)
176 3auy_A DNA double-strand break 98.3 3E-07 1E-11 82.5 4.2 48 206-253 278-332 (371)
177 3tau_A Guanylate kinase, GMP k 98.3 3.1E-07 1E-11 75.6 3.9 28 105-132 6-33 (208)
178 2p67_A LAO/AO transport system 98.3 4E-08 1.4E-12 87.3 -1.6 55 74-132 27-81 (341)
179 2bdt_A BH3686; alpha-beta prot 98.3 2.8E-07 9.4E-12 74.3 3.4 25 107-131 2-26 (189)
180 1knq_A Gluconate kinase; ALFA/ 98.3 4.7E-07 1.6E-11 72.0 4.2 27 105-131 6-32 (175)
181 4e22_A Cytidylate kinase; P-lo 98.3 1.8E-07 6.2E-12 79.5 1.7 34 105-141 25-61 (252)
182 1uj2_A Uridine-cytidine kinase 98.3 1.5E-06 5.2E-11 73.5 7.4 120 106-241 21-145 (252)
183 2vp4_A Deoxynucleoside kinase; 98.3 2.6E-07 8.9E-12 77.3 2.2 30 101-130 14-43 (230)
184 1kag_A SKI, shikimate kinase I 98.2 5.1E-07 1.7E-11 71.5 3.3 27 106-132 3-29 (173)
185 2ius_A DNA translocase FTSK; n 98.2 2.2E-07 7.4E-12 86.7 1.1 31 99-129 159-189 (512)
186 1zu4_A FTSY; GTPase, signal re 98.2 8E-07 2.7E-11 78.3 4.1 35 98-132 96-130 (320)
187 2zr9_A Protein RECA, recombina 98.2 2.2E-06 7.5E-11 76.4 6.9 30 103-132 57-86 (349)
188 3ney_A 55 kDa erythrocyte memb 98.2 9.5E-07 3.2E-11 72.5 4.0 31 101-131 13-43 (197)
189 3cr8_A Sulfate adenylyltranfer 98.2 8.1E-07 2.8E-11 83.7 3.5 34 103-139 365-398 (552)
190 3kl4_A SRP54, signal recogniti 98.2 8.9E-06 3E-10 74.4 10.2 27 106-132 96-122 (433)
191 3m6a_A ATP-dependent protease 98.1 1E-06 3.5E-11 83.0 2.5 50 78-132 84-133 (543)
192 2ffh_A Protein (FFH); SRP54, s 98.1 7.8E-06 2.7E-10 74.6 8.1 45 80-132 79-123 (425)
193 1a7j_A Phosphoribulokinase; tr 98.1 1.3E-06 4.4E-11 75.9 2.8 117 106-238 4-136 (290)
194 1nij_A Hypothetical protein YJ 98.1 1.2E-06 4.1E-11 77.0 2.3 25 107-131 4-28 (318)
195 3ice_A Transcription terminati 98.0 2.1E-06 7.1E-11 77.2 3.5 53 77-132 133-199 (422)
196 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 3.6E-06 1.2E-10 65.7 4.3 31 100-131 17-47 (149)
197 1fnn_A CDC6P, cell division co 98.0 8E-06 2.7E-10 72.5 6.5 28 105-132 40-69 (389)
198 1cke_A CK, MSSA, protein (cyti 98.0 3.7E-06 1.3E-10 69.4 3.9 34 107-140 5-38 (227)
199 4eaq_A DTMP kinase, thymidylat 98.0 4.7E-06 1.6E-10 69.8 4.3 36 97-132 13-51 (229)
200 2pez_A Bifunctional 3'-phospho 98.0 4.9E-06 1.7E-10 66.3 4.2 28 105-132 3-30 (179)
201 1sxj_C Activator 1 40 kDa subu 97.9 2.4E-06 8.2E-11 75.4 1.4 47 82-132 23-71 (340)
202 3b9p_A CG5977-PA, isoform A; A 97.9 3.9E-05 1.3E-09 65.9 9.0 26 106-131 53-78 (297)
203 2xau_A PRE-mRNA-splicing facto 97.9 4.6E-06 1.6E-10 81.7 3.3 46 205-250 187-233 (773)
204 1y63_A LMAJ004144AAA protein; 97.9 8.7E-06 3E-10 65.4 3.8 32 99-130 2-33 (184)
205 1j8m_F SRP54, signal recogniti 97.8 4.8E-06 1.6E-10 72.5 2.3 46 80-132 77-123 (297)
206 4a1f_A DNAB helicase, replicat 97.8 1.5E-05 5E-10 70.7 5.4 106 96-240 35-141 (338)
207 1jjv_A Dephospho-COA kinase; P 97.8 6.9E-06 2.4E-10 66.9 3.0 22 108-129 3-24 (206)
208 2dhr_A FTSH; AAA+ protein, hex 97.8 3.4E-06 1.2E-10 78.6 1.2 49 78-132 41-89 (499)
209 3hr8_A Protein RECA; alpha and 97.8 1.9E-05 6.5E-10 70.4 6.0 30 103-132 57-86 (356)
210 2qor_A Guanylate kinase; phosp 97.8 9.4E-06 3.2E-10 66.2 3.4 29 103-131 8-36 (204)
211 4fcw_A Chaperone protein CLPB; 97.8 6.2E-05 2.1E-09 64.9 8.7 26 107-132 47-72 (311)
212 2if2_A Dephospho-COA kinase; a 97.8 1E-05 3.4E-10 65.7 3.3 22 109-131 3-24 (204)
213 2yvu_A Probable adenylyl-sulfa 97.8 1.7E-05 5.9E-10 63.5 4.4 31 102-132 8-38 (186)
214 2qtf_A Protein HFLX, GTP-bindi 97.8 4.3E-06 1.5E-10 74.9 0.8 23 109-131 181-203 (364)
215 1m7g_A Adenylylsulfate kinase; 97.8 1.5E-05 5E-10 65.5 3.8 31 102-132 20-50 (211)
216 4ad8_A DNA repair protein RECN 97.7 8E-06 2.7E-10 76.3 2.0 36 96-132 50-85 (517)
217 3t61_A Gluconokinase; PSI-biol 97.7 1.7E-05 5.8E-10 64.4 3.5 25 107-131 18-42 (202)
218 3qks_A DNA double-strand break 97.7 2.3E-05 7.8E-10 64.3 4.3 33 99-132 16-48 (203)
219 2www_A Methylmalonic aciduria 97.7 2E-05 6.7E-10 70.1 3.9 33 105-140 72-104 (349)
220 3cm0_A Adenylate kinase; ATP-b 97.7 2.4E-05 8.2E-10 62.4 3.8 27 105-131 2-28 (186)
221 2z43_A DNA repair and recombin 97.7 4.3E-05 1.5E-09 67.1 5.8 29 103-131 103-131 (324)
222 2e87_A Hypothetical protein PH 97.6 9.2E-05 3.2E-09 65.8 7.2 45 207-252 230-275 (357)
223 1q3t_A Cytidylate kinase; nucl 97.6 3.5E-05 1.2E-09 64.3 4.1 37 104-140 13-49 (236)
224 1v5w_A DMC1, meiotic recombina 97.6 0.0001 3.4E-09 65.3 7.2 29 103-131 118-146 (343)
225 3kb2_A SPBC2 prophage-derived 97.6 3.7E-05 1.3E-09 60.2 3.7 24 109-132 3-26 (173)
226 3t34_A Dynamin-related protein 97.6 2.4E-05 8.1E-10 69.7 2.7 47 80-130 11-57 (360)
227 3h4m_A Proteasome-activating n 97.6 7.5E-05 2.6E-09 63.7 5.4 29 104-132 48-76 (285)
228 2gj8_A MNME, tRNA modification 97.6 3.6E-05 1.2E-09 60.8 3.0 27 105-131 2-28 (172)
229 2p5t_B PEZT; postsegregational 97.5 3.4E-05 1.1E-09 65.3 2.9 33 98-131 24-56 (253)
230 3bh0_A DNAB-like replicative h 97.5 0.00014 4.6E-09 63.7 6.8 36 96-131 57-92 (315)
231 2qag_A Septin-2, protein NEDD5 97.5 1.3E-05 4.5E-10 71.6 0.2 45 77-131 17-61 (361)
232 1qhx_A CPT, protein (chloramph 97.5 5.4E-05 1.9E-09 59.8 3.8 25 107-131 3-27 (178)
233 3dm5_A SRP54, signal recogniti 97.5 0.00074 2.5E-08 61.8 11.5 27 106-132 99-125 (443)
234 1np6_A Molybdopterin-guanine d 97.5 6.3E-05 2.1E-09 60.3 3.8 26 107-132 6-31 (174)
235 2z4s_A Chromosomal replication 97.5 5.3E-05 1.8E-09 69.4 3.7 26 107-132 130-155 (440)
236 1ega_A Protein (GTP-binding pr 97.5 4E-05 1.4E-09 66.6 2.6 27 105-131 6-32 (301)
237 1lv7_A FTSH; alpha/beta domain 97.5 6.3E-05 2.1E-09 63.3 3.7 34 97-132 37-70 (257)
238 2ze6_A Isopentenyl transferase 97.5 7.2E-05 2.5E-09 63.3 3.9 24 108-131 2-25 (253)
239 1m2o_B GTP-binding protein SAR 97.5 6.4E-05 2.2E-09 60.3 3.4 34 96-130 13-46 (190)
240 2rhm_A Putative kinase; P-loop 97.4 8.5E-05 2.9E-09 59.3 4.0 27 105-131 3-29 (193)
241 1kht_A Adenylate kinase; phosp 97.4 8.2E-05 2.8E-09 59.2 3.9 25 107-131 3-27 (192)
242 1vht_A Dephospho-COA kinase; s 97.4 0.0001 3.5E-09 60.4 4.1 24 106-129 3-26 (218)
243 3r20_A Cytidylate kinase; stru 97.4 9.1E-05 3.1E-09 62.2 3.8 27 106-132 8-34 (233)
244 1via_A Shikimate kinase; struc 97.4 8E-05 2.7E-09 58.9 3.2 24 109-132 6-29 (175)
245 3d3q_A TRNA delta(2)-isopenten 97.4 0.00018 6E-09 63.7 5.6 37 108-163 8-44 (340)
246 3iij_A Coilin-interacting nucl 97.4 9E-05 3.1E-09 58.8 3.5 28 104-131 8-35 (180)
247 2jaq_A Deoxyguanosine kinase; 97.4 0.0001 3.4E-09 59.4 3.8 24 109-132 2-25 (205)
248 3lw7_A Adenylate kinase relate 97.4 8.7E-05 3E-09 57.9 3.2 20 108-127 2-21 (179)
249 2wji_A Ferrous iron transport 97.4 7.2E-05 2.5E-09 58.4 2.8 24 108-131 4-27 (165)
250 1f6b_A SAR1; gtpases, N-termin 97.4 3.2E-05 1.1E-09 62.6 0.5 41 85-129 7-47 (198)
251 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.3E-09 58.1 3.8 26 107-132 5-30 (185)
252 1uf9_A TT1252 protein; P-loop, 97.3 0.00013 4.4E-09 58.8 3.8 25 106-130 7-31 (203)
253 2v54_A DTMP kinase, thymidylat 97.3 0.00014 4.7E-09 58.7 3.9 26 106-131 3-28 (204)
254 2plr_A DTMP kinase, probable t 97.3 0.00015 5.2E-09 58.6 4.2 27 106-132 3-29 (213)
255 2c95_A Adenylate kinase 1; tra 97.3 0.00014 4.9E-09 58.1 3.9 28 104-131 6-33 (196)
256 1gtv_A TMK, thymidylate kinase 97.3 6.1E-05 2.1E-09 61.3 1.6 24 109-132 2-25 (214)
257 1ly1_A Polynucleotide kinase; 97.3 0.00014 4.6E-09 57.3 3.6 22 108-129 3-24 (181)
258 1tev_A UMP-CMP kinase; ploop, 97.3 0.00017 5.7E-09 57.5 4.0 26 106-131 2-27 (196)
259 2v1u_A Cell division control p 97.3 0.00034 1.2E-08 61.6 6.2 28 105-132 42-69 (387)
260 3ake_A Cytidylate kinase; CMP 97.3 0.00016 5.3E-09 58.5 3.7 24 109-132 4-27 (208)
261 2wwf_A Thymidilate kinase, put 97.3 0.00016 5.5E-09 58.7 3.8 27 105-131 8-34 (212)
262 1ypw_A Transitional endoplasmi 97.3 0.00013 4.5E-09 71.7 3.7 31 102-132 233-263 (806)
263 2wjg_A FEOB, ferrous iron tran 97.3 0.00014 4.7E-09 57.6 3.0 23 108-130 8-30 (188)
264 1nn5_A Similar to deoxythymidy 97.2 0.00019 6.3E-09 58.3 3.8 27 105-131 7-33 (215)
265 1gvn_B Zeta; postsegregational 97.2 0.00017 5.9E-09 62.2 3.7 29 103-131 29-57 (287)
266 1xjc_A MOBB protein homolog; s 97.2 0.0002 6.8E-09 57.1 3.8 25 108-132 5-29 (169)
267 2bwj_A Adenylate kinase 5; pho 97.2 9.4E-05 3.2E-09 59.4 1.9 28 104-131 9-36 (199)
268 3exa_A TRNA delta(2)-isopenten 97.2 0.00045 1.6E-08 60.4 6.2 25 107-131 3-27 (322)
269 3auy_A DNA double-strand break 97.2 0.00017 5.7E-09 64.5 3.4 31 98-129 17-47 (371)
270 2vli_A Antibiotic resistance p 97.2 0.00014 4.8E-09 57.6 2.6 27 106-132 4-30 (183)
271 3cf0_A Transitional endoplasmi 97.2 0.0002 6.7E-09 62.0 3.7 31 102-132 44-74 (301)
272 1ex7_A Guanylate kinase; subst 97.2 0.00019 6.3E-09 58.2 3.2 23 109-131 3-25 (186)
273 1nks_A Adenylate kinase; therm 97.2 0.00022 7.4E-09 56.7 3.5 24 109-132 3-26 (194)
274 2zej_A Dardarin, leucine-rich 97.2 0.00015 5E-09 57.7 2.3 23 109-131 4-26 (184)
275 2z0h_A DTMP kinase, thymidylat 97.2 0.00026 8.9E-09 56.6 3.7 23 109-131 2-24 (197)
276 1aky_A Adenylate kinase; ATP:A 97.1 0.00029 9.9E-09 57.8 4.0 26 106-131 3-28 (220)
277 2cdn_A Adenylate kinase; phosp 97.1 0.00036 1.2E-08 56.4 4.1 27 105-131 18-44 (201)
278 3a8t_A Adenylate isopentenyltr 97.1 0.00056 1.9E-08 60.4 5.5 26 106-131 39-64 (339)
279 1ukz_A Uridylate kinase; trans 97.1 0.00039 1.3E-08 56.1 4.1 27 105-131 13-39 (203)
280 3crm_A TRNA delta(2)-isopenten 97.1 0.00066 2.3E-08 59.6 5.7 24 108-131 6-29 (323)
281 2iyv_A Shikimate kinase, SK; t 97.1 0.00028 9.6E-09 56.1 3.0 25 108-132 3-27 (184)
282 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00041 1.4E-08 62.6 4.3 28 103-130 18-45 (396)
283 1qf9_A UMP/CMP kinase, protein 97.1 0.00037 1.3E-08 55.3 3.7 25 107-131 6-30 (194)
284 3fb4_A Adenylate kinase; psych 97.0 0.00037 1.3E-08 56.8 3.7 23 109-131 2-24 (216)
285 1zuh_A Shikimate kinase; alpha 97.0 0.0004 1.4E-08 54.3 3.8 26 107-132 7-32 (168)
286 1e6c_A Shikimate kinase; phosp 97.0 0.00032 1.1E-08 54.9 3.2 24 108-131 3-26 (173)
287 1zd8_A GTP:AMP phosphotransfer 97.0 0.00034 1.2E-08 57.7 3.5 27 105-131 5-31 (227)
288 2pbr_A DTMP kinase, thymidylat 97.0 0.00039 1.3E-08 55.3 3.7 23 109-131 2-24 (195)
289 2dy1_A Elongation factor G; tr 97.0 0.00031 1.1E-08 67.6 3.5 32 101-132 3-34 (665)
290 3foz_A TRNA delta(2)-isopenten 97.0 0.00089 3E-08 58.4 5.9 25 107-131 10-34 (316)
291 2pt5_A Shikimate kinase, SK; a 97.0 0.00047 1.6E-08 53.7 3.8 23 109-131 2-24 (168)
292 1zak_A Adenylate kinase; ATP:A 97.0 0.00037 1.3E-08 57.3 3.3 27 106-132 4-30 (222)
293 3dl0_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 56.4 3.6 23 109-131 2-24 (216)
294 3tlx_A Adenylate kinase 2; str 97.0 0.00059 2E-08 57.2 4.3 27 105-131 27-53 (243)
295 3lxx_A GTPase IMAP family memb 97.0 0.00035 1.2E-08 58.1 2.8 25 108-132 30-54 (239)
296 3umf_A Adenylate kinase; rossm 96.9 0.00066 2.3E-08 56.2 4.3 31 102-132 24-54 (217)
297 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00054 1.9E-08 58.0 3.8 26 106-131 3-28 (260)
298 2grj_A Dephospho-COA kinase; T 96.9 0.00049 1.7E-08 55.8 3.4 26 106-131 11-36 (192)
299 3k53_A Ferrous iron transport 96.9 0.00043 1.5E-08 58.8 2.7 24 108-131 4-27 (271)
300 3eph_A TRNA isopentenyltransfe 96.9 0.0012 4.3E-08 59.5 5.8 25 107-131 2-26 (409)
301 2f6r_A COA synthase, bifunctio 96.9 0.00061 2.1E-08 58.5 3.6 24 106-129 74-97 (281)
302 1mky_A Probable GTP-binding pr 96.8 0.00051 1.7E-08 62.7 3.0 24 108-131 181-204 (439)
303 2xb4_A Adenylate kinase; ATP-b 96.8 0.00077 2.6E-08 55.6 3.8 23 109-131 2-24 (223)
304 3bos_A Putative DNA replicatio 96.8 0.00088 3E-08 54.8 4.0 27 106-132 51-77 (242)
305 2ged_A SR-beta, signal recogni 96.8 0.00079 2.7E-08 53.4 3.6 25 107-131 48-72 (193)
306 1z2a_A RAS-related protein RAB 96.8 0.00083 2.8E-08 51.6 3.3 23 109-131 7-29 (168)
307 3llm_A ATP-dependent RNA helic 96.7 0.00055 1.9E-08 56.9 2.4 29 102-130 71-99 (235)
308 3be4_A Adenylate kinase; malar 96.7 0.00082 2.8E-08 55.1 3.4 26 106-131 4-29 (217)
309 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00088 3E-08 60.0 3.7 32 106-140 34-65 (392)
310 2qby_A CDC6 homolog 1, cell di 96.7 0.00077 2.6E-08 59.2 3.3 28 105-132 43-70 (386)
311 2dyk_A GTP-binding protein; GT 96.7 0.00091 3.1E-08 51.1 3.3 23 109-131 3-25 (161)
312 1kao_A RAP2A; GTP-binding prot 96.7 0.00095 3.3E-08 51.1 3.3 23 109-131 5-27 (167)
313 2ce2_X GTPase HRAS; signaling 96.7 0.00087 3E-08 51.1 3.0 23 109-131 5-27 (166)
314 1u8z_A RAS-related protein RAL 96.7 0.00098 3.4E-08 51.0 3.3 23 109-131 6-28 (168)
315 1ak2_A Adenylate kinase isoenz 96.7 0.0013 4.3E-08 54.6 4.2 27 106-132 15-41 (233)
316 2h92_A Cytidylate kinase; ross 96.7 0.00095 3.3E-08 54.5 3.3 25 107-131 3-27 (219)
317 1e4v_A Adenylate kinase; trans 96.7 0.001 3.5E-08 54.3 3.4 23 109-131 2-24 (214)
318 1z0j_A RAB-22, RAS-related pro 96.7 0.0011 3.6E-08 51.1 3.3 23 109-131 8-30 (170)
319 4edh_A DTMP kinase, thymidylat 96.7 0.0014 4.6E-08 54.1 4.1 28 105-132 4-31 (213)
320 1z08_A RAS-related protein RAB 96.7 0.0011 3.7E-08 51.1 3.4 23 109-131 8-30 (170)
321 1ky3_A GTP-binding protein YPT 96.6 0.0011 3.7E-08 51.7 3.3 23 109-131 10-32 (182)
322 1ek0_A Protein (GTP-binding pr 96.6 0.0011 3.7E-08 51.0 3.3 23 109-131 5-27 (170)
323 2w58_A DNAI, primosome compone 96.6 0.0013 4.4E-08 52.9 3.8 25 108-132 55-79 (202)
324 1ltq_A Polynucleotide kinase; 96.6 0.0011 3.7E-08 56.9 3.6 23 108-130 3-25 (301)
325 1jbk_A CLPB protein; beta barr 96.6 0.0015 5.2E-08 51.1 4.2 28 105-132 41-68 (195)
326 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.0011 3.9E-08 51.5 3.3 23 109-131 9-31 (177)
327 2xxa_A Signal recognition part 96.6 0.022 7.5E-07 51.9 12.4 28 105-132 98-125 (433)
328 2lkc_A Translation initiation 96.6 0.0012 4.1E-08 51.4 3.5 26 106-131 7-32 (178)
329 1c1y_A RAS-related protein RAP 96.6 0.0012 4E-08 50.7 3.3 23 109-131 5-27 (167)
330 1g16_A RAS-related protein SEC 96.6 0.001 3.5E-08 51.2 3.0 23 109-131 5-27 (170)
331 2erx_A GTP-binding protein DI- 96.6 0.00098 3.4E-08 51.3 2.8 22 109-130 5-26 (172)
332 2q6t_A DNAB replication FORK h 96.6 0.0029 1E-07 57.7 6.4 36 96-131 189-224 (444)
333 2nzj_A GTP-binding protein REM 96.6 0.00092 3.1E-08 51.8 2.6 23 109-131 6-28 (175)
334 3lv8_A DTMP kinase, thymidylat 96.6 0.0014 4.7E-08 55.0 3.7 27 106-132 26-52 (236)
335 2fn4_A P23, RAS-related protei 96.6 0.0011 3.9E-08 51.5 3.1 24 108-131 10-33 (181)
336 3b1v_A Ferrous iron uptake tra 96.6 0.00098 3.4E-08 57.0 2.8 24 108-131 4-27 (272)
337 1sxj_D Activator 1 41 kDa subu 96.6 0.00085 2.9E-08 58.5 2.5 35 98-132 47-83 (353)
338 3v9p_A DTMP kinase, thymidylat 96.6 0.0011 3.9E-08 55.2 3.1 28 105-132 23-50 (227)
339 1njg_A DNA polymerase III subu 96.6 0.00064 2.2E-08 55.2 1.4 25 108-132 46-70 (250)
340 1r2q_A RAS-related protein RAB 96.5 0.0014 4.7E-08 50.4 3.3 23 109-131 8-30 (170)
341 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0014 4.8E-08 51.4 3.3 23 109-131 6-28 (189)
342 2oil_A CATX-8, RAS-related pro 96.5 0.0014 4.7E-08 52.0 3.3 23 109-131 27-49 (193)
343 2r8r_A Sensor protein; KDPD, P 96.5 0.0069 2.4E-07 50.4 7.6 26 106-131 4-30 (228)
344 3clv_A RAB5 protein, putative; 96.5 0.0014 4.8E-08 51.8 3.3 24 108-131 8-31 (208)
345 3q85_A GTP-binding protein REM 96.5 0.0011 3.6E-08 51.2 2.5 23 109-131 4-26 (169)
346 3bc1_A RAS-related protein RAB 96.5 0.0014 4.9E-08 51.5 3.3 23 109-131 13-35 (195)
347 2ocp_A DGK, deoxyguanosine kin 96.5 0.0016 5.6E-08 54.1 3.7 26 106-131 1-26 (241)
348 3zvl_A Bifunctional polynucleo 96.5 0.0014 4.8E-08 59.4 3.5 30 102-131 253-282 (416)
349 1r8s_A ADP-ribosylation factor 96.5 0.0016 5.3E-08 50.0 3.3 23 109-131 2-24 (164)
350 1ko7_A HPR kinase/phosphatase; 96.5 0.0019 6.3E-08 56.5 4.0 33 96-129 134-166 (314)
351 3q72_A GTP-binding protein RAD 96.5 0.00077 2.6E-08 51.9 1.5 23 109-131 4-26 (166)
352 4tmk_A Protein (thymidylate ki 96.5 0.0018 6.2E-08 53.3 3.8 27 106-132 2-28 (213)
353 2a9k_A RAS-related protein RAL 96.5 0.0016 5.5E-08 50.9 3.3 24 108-131 19-42 (187)
354 3ld9_A DTMP kinase, thymidylat 96.5 0.0022 7.5E-08 53.3 4.2 28 105-132 19-46 (223)
355 1upt_A ARL1, ADP-ribosylation 96.5 0.0022 7.6E-08 49.4 4.1 25 107-131 7-31 (171)
356 1svi_A GTP-binding protein YSX 96.5 0.0011 3.7E-08 52.6 2.3 24 107-130 23-46 (195)
357 2qmh_A HPR kinase/phosphorylas 96.5 0.0015 5.3E-08 53.4 3.2 35 96-131 24-58 (205)
358 3sr0_A Adenylate kinase; phosp 96.5 0.0019 6.4E-08 53.0 3.7 24 109-132 2-25 (206)
359 1z0f_A RAB14, member RAS oncog 96.5 0.0017 5.7E-08 50.4 3.3 23 109-131 17-39 (179)
360 3ihw_A Centg3; RAS, centaurin, 96.5 0.0017 5.8E-08 51.5 3.4 23 109-131 22-44 (184)
361 3t1o_A Gliding protein MGLA; G 96.5 0.0017 5.7E-08 51.3 3.3 24 109-132 16-39 (198)
362 2y8e_A RAB-protein 6, GH09086P 96.5 0.0015 5.2E-08 50.7 3.0 23 109-131 16-38 (179)
363 3con_A GTPase NRAS; structural 96.5 0.0017 5.7E-08 51.3 3.3 23 109-131 23-45 (190)
364 2g6b_A RAS-related protein RAB 96.4 0.0017 5.8E-08 50.6 3.3 23 109-131 12-34 (180)
365 1fzq_A ADP-ribosylation factor 96.4 0.00091 3.1E-08 52.9 1.7 24 107-130 16-39 (181)
366 1ypw_A Transitional endoplasmi 96.4 0.00081 2.8E-08 66.1 1.6 33 100-132 504-536 (806)
367 3tw8_B RAS-related protein RAB 96.4 0.001 3.5E-08 51.8 1.9 23 109-131 11-33 (181)
368 1qvr_A CLPB protein; coiled co 96.4 0.0051 1.7E-07 60.8 7.3 25 108-132 589-613 (854)
369 3pqc_A Probable GTP-binding pr 96.4 0.0013 4.4E-08 51.9 2.5 24 108-131 24-47 (195)
370 2hxs_A RAB-26, RAS-related pro 96.4 0.0016 5.3E-08 50.7 2.9 23 109-131 8-30 (178)
371 2efe_B Small GTP-binding prote 96.4 0.0019 6.4E-08 50.4 3.4 23 109-131 14-36 (181)
372 3tmk_A Thymidylate kinase; pho 96.4 0.0021 7.3E-08 53.1 3.8 28 105-132 3-30 (216)
373 1nrj_B SR-beta, signal recogni 96.4 0.0018 6E-08 52.5 3.3 24 108-131 13-36 (218)
374 2p65_A Hypothetical protein PF 96.4 0.0019 6.5E-08 50.5 3.3 28 105-132 41-68 (187)
375 3lxw_A GTPase IMAP family memb 96.4 0.0015 5.1E-08 54.8 2.8 24 108-131 22-45 (247)
376 2cxx_A Probable GTP-binding pr 96.4 0.0012 4.1E-08 51.9 2.1 23 109-131 3-25 (190)
377 2bov_A RAla, RAS-related prote 96.4 0.0019 6.5E-08 51.5 3.3 23 109-131 16-38 (206)
378 2bme_A RAB4A, RAS-related prot 96.4 0.0017 6E-08 50.9 3.0 24 108-131 11-34 (186)
379 1vg8_A RAS-related protein RAB 96.4 0.002 6.7E-08 51.6 3.3 24 108-131 9-32 (207)
380 1l8q_A Chromosomal replication 96.4 0.0017 5.8E-08 56.4 3.1 27 106-132 36-62 (324)
381 2wsm_A Hydrogenase expression/ 96.4 0.002 6.7E-08 52.4 3.3 26 106-131 29-54 (221)
382 2gf9_A RAS-related protein RAB 96.4 0.002 6.9E-08 50.9 3.3 23 109-131 24-46 (189)
383 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0018 6.3E-08 51.0 3.0 23 109-131 9-31 (184)
384 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0027 9.3E-08 52.9 4.2 28 105-132 37-64 (262)
385 3tkl_A RAS-related protein RAB 96.4 0.0021 7.1E-08 50.9 3.3 23 109-131 18-40 (196)
386 3kkq_A RAS-related protein M-R 96.3 0.0021 7.3E-08 50.3 3.3 24 108-131 19-42 (183)
387 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0022 7.5E-08 50.1 3.3 23 109-131 7-29 (186)
388 2fg5_A RAB-22B, RAS-related pr 96.3 0.002 6.8E-08 51.3 3.1 23 109-131 25-47 (192)
389 2gf0_A GTP-binding protein DI- 96.3 0.002 6.9E-08 51.1 3.1 24 108-131 9-32 (199)
390 2r62_A Cell division protease 96.3 0.00099 3.4E-08 56.1 1.3 33 98-132 37-69 (268)
391 2dby_A GTP-binding protein; GD 96.3 0.002 6.8E-08 57.6 3.3 23 109-131 3-25 (368)
392 1wf3_A GTP-binding protein; GT 96.3 0.0019 6.5E-08 56.0 3.0 23 109-131 9-31 (301)
393 3iev_A GTP-binding protein ERA 96.3 0.0019 6.6E-08 56.0 3.0 24 108-131 11-34 (308)
394 2cjw_A GTP-binding protein GEM 96.3 0.0023 8E-08 51.1 3.3 23 109-131 8-30 (192)
395 1z06_A RAS-related protein RAB 96.3 0.0024 8.3E-08 50.5 3.3 23 109-131 22-44 (189)
396 2a5j_A RAS-related protein RAB 96.3 0.0025 8.5E-08 50.6 3.3 23 109-131 23-45 (191)
397 1p5z_B DCK, deoxycytidine kina 96.3 0.0012 4.3E-08 55.6 1.6 27 105-131 22-48 (263)
398 3oes_A GTPase rhebl1; small GT 96.3 0.0022 7.6E-08 51.3 3.0 25 107-131 24-48 (201)
399 3dz8_A RAS-related protein RAB 96.3 0.0023 7.7E-08 50.8 3.0 23 109-131 25-47 (191)
400 3t5g_A GTP-binding protein RHE 96.2 0.0023 7.9E-08 50.0 3.0 22 109-130 8-29 (181)
401 1jal_A YCHF protein; nucleotid 96.2 0.0027 9.1E-08 56.6 3.7 24 107-130 2-25 (363)
402 2atv_A RERG, RAS-like estrogen 96.2 0.0027 9.1E-08 50.6 3.3 24 108-131 29-52 (196)
403 2ew1_A RAS-related protein RAB 96.2 0.0023 8E-08 51.7 3.0 23 109-131 28-50 (201)
404 1zd9_A ADP-ribosylation factor 96.2 0.0026 9E-08 50.3 3.3 24 108-131 23-46 (188)
405 2i1q_A DNA repair and recombin 96.2 0.0024 8.3E-08 55.5 3.2 28 103-130 94-121 (322)
406 3reg_A RHO-like small GTPase; 96.2 0.0027 9.4E-08 50.4 3.3 23 109-131 25-47 (194)
407 3iby_A Ferrous iron transport 96.2 0.0021 7.2E-08 54.3 2.7 23 109-131 3-25 (256)
408 1x3s_A RAS-related protein RAB 96.2 0.0028 9.4E-08 50.0 3.3 24 108-131 16-39 (195)
409 1moz_A ARL1, ADP-ribosylation 96.2 0.002 6.9E-08 50.4 2.4 25 105-129 16-40 (183)
410 2p5s_A RAS and EF-hand domain 96.2 0.0028 9.5E-08 50.7 3.3 25 107-131 28-52 (199)
411 2bcg_Y Protein YP2, GTP-bindin 96.2 0.0025 8.5E-08 51.1 3.0 23 109-131 10-32 (206)
412 2fv8_A H6, RHO-related GTP-bin 96.2 0.0025 8.7E-08 51.3 3.1 34 98-131 16-49 (207)
413 2xtp_A GTPase IMAP family memb 96.2 0.0023 7.9E-08 53.7 2.8 24 108-131 23-46 (260)
414 2iwr_A Centaurin gamma 1; ANK 96.2 0.0022 7.5E-08 50.0 2.5 23 109-131 9-31 (178)
415 3cph_A RAS-related protein SEC 96.2 0.0029 9.9E-08 50.8 3.3 26 106-131 19-44 (213)
416 1zbd_A Rabphilin-3A; G protein 96.2 0.0024 8.3E-08 51.0 2.8 23 109-131 10-32 (203)
417 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0031 1.1E-07 58.0 3.7 35 97-132 142-176 (473)
418 3c5c_A RAS-like protein 12; GD 96.1 0.0032 1.1E-07 49.9 3.3 24 108-131 22-45 (187)
419 2zts_A Putative uncharacterize 96.1 0.0031 1.1E-07 52.0 3.4 25 104-128 27-51 (251)
420 3bwd_D RAC-like GTP-binding pr 96.1 0.004 1.4E-07 48.5 3.8 24 108-131 9-32 (182)
421 1gwn_A RHO-related GTP-binding 96.1 0.0029 9.8E-08 51.3 3.0 24 108-131 29-52 (205)
422 3a1s_A Iron(II) transport prot 96.1 0.0028 9.7E-08 53.5 3.1 23 109-131 7-29 (258)
423 3cbq_A GTP-binding protein REM 96.1 0.0016 5.6E-08 52.2 1.5 23 109-131 25-47 (195)
424 4hlc_A DTMP kinase, thymidylat 96.1 0.0044 1.5E-07 50.6 4.0 26 107-132 2-27 (205)
425 1zj6_A ADP-ribosylation factor 96.1 0.0026 8.8E-08 50.2 2.5 25 106-130 15-39 (187)
426 2v3c_C SRP54, signal recogniti 96.1 0.0023 7.9E-08 58.4 2.5 26 107-132 99-124 (432)
427 3tqf_A HPR(Ser) kinase; transf 96.1 0.0037 1.3E-07 49.9 3.3 32 97-129 7-38 (181)
428 2fh5_B SR-beta, signal recogni 96.1 0.0039 1.3E-07 50.3 3.5 24 108-131 8-31 (214)
429 2o52_A RAS-related protein RAB 96.0 0.0024 8.3E-08 51.2 2.2 23 109-131 27-49 (200)
430 1ksh_A ARF-like protein 2; sma 96.0 0.0033 1.1E-07 49.4 2.9 26 106-131 17-42 (186)
431 2hf9_A Probable hydrogenase ni 96.0 0.0037 1.3E-07 50.9 3.2 26 106-131 37-62 (226)
432 3t5d_A Septin-7; GTP-binding p 96.0 0.002 6.8E-08 54.8 1.7 23 109-131 10-32 (274)
433 2h17_A ADP-ribosylation factor 96.0 0.0024 8.2E-08 50.2 2.0 24 108-131 22-45 (181)
434 2gco_A H9, RHO-related GTP-bin 96.0 0.0036 1.2E-07 50.2 3.0 23 109-131 27-49 (201)
435 3i8s_A Ferrous iron transport 96.0 0.0032 1.1E-07 53.7 2.8 23 109-131 5-27 (274)
436 4dhe_A Probable GTP-binding pr 96.0 0.0016 5.4E-08 52.9 0.8 25 107-131 29-53 (223)
437 2il1_A RAB12; G-protein, GDP, 96.0 0.0023 7.9E-08 50.9 1.7 23 109-131 28-50 (192)
438 2atx_A Small GTP binding prote 96.0 0.0039 1.3E-07 49.4 3.1 23 109-131 20-42 (194)
439 2f7s_A C25KG, RAS-related prot 96.0 0.0032 1.1E-07 50.9 2.6 23 109-131 27-49 (217)
440 1jwy_B Dynamin A GTPase domain 96.0 0.0032 1.1E-07 54.2 2.7 24 108-131 25-48 (315)
441 3t15_A Ribulose bisphosphate c 96.0 0.0049 1.7E-07 53.0 3.8 29 104-132 33-61 (293)
442 1u94_A RECA protein, recombina 96.0 0.0044 1.5E-07 55.1 3.7 28 104-131 60-87 (356)
443 2fu5_C RAS-related protein RAB 95.9 0.0023 7.9E-08 50.1 1.6 23 109-131 10-32 (183)
444 2qu8_A Putative nucleolar GTP- 95.9 0.0031 1.1E-07 51.7 2.5 25 107-131 29-53 (228)
445 2orw_A Thymidine kinase; TMTK, 95.9 0.0053 1.8E-07 49.2 3.7 25 106-130 2-26 (184)
446 2h57_A ADP-ribosylation factor 95.9 0.0019 6.6E-08 51.1 1.1 24 108-131 22-45 (190)
447 4bas_A ADP-ribosylation factor 95.9 0.0026 9E-08 50.4 1.9 25 107-131 17-41 (199)
448 3pvs_A Replication-associated 95.9 0.0016 5.6E-08 59.6 0.7 31 102-132 43-75 (447)
449 3syl_A Protein CBBX; photosynt 95.9 0.0052 1.8E-07 52.6 3.9 28 105-132 65-92 (309)
450 2q3h_A RAS homolog gene family 95.9 0.0035 1.2E-07 50.0 2.5 24 107-130 20-43 (201)
451 3p32_A Probable GTPase RV1496/ 95.9 0.0063 2.2E-07 53.8 4.3 27 105-131 77-103 (355)
452 3n70_A Transport activator; si 95.9 0.0052 1.8E-07 46.9 3.3 27 105-131 22-48 (145)
453 3gmt_A Adenylate kinase; ssgci 95.9 0.0052 1.8E-07 51.3 3.5 25 108-132 9-33 (230)
454 2j1l_A RHO-related GTP-binding 95.9 0.0033 1.1E-07 51.0 2.3 22 109-130 36-57 (214)
455 2hup_A RAS-related protein RAB 95.9 0.0045 1.5E-07 49.7 3.1 23 109-131 31-53 (201)
456 2chg_A Replication factor C sm 95.9 0.0053 1.8E-07 49.1 3.5 23 109-131 40-62 (226)
457 3cpj_B GTP-binding protein YPT 95.8 0.0052 1.8E-07 50.1 3.4 23 109-131 15-37 (223)
458 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0063 2.1E-07 53.1 4.0 27 105-131 43-69 (322)
459 3llu_A RAS-related GTP-binding 95.8 0.0036 1.2E-07 49.9 2.3 24 108-131 21-44 (196)
460 4gzl_A RAS-related C3 botulinu 95.8 0.0051 1.7E-07 49.5 3.0 24 107-130 30-53 (204)
461 3q3j_B RHO-related GTP-binding 95.7 0.0058 2E-07 49.6 3.3 24 108-131 28-51 (214)
462 1tue_A Replication protein E1; 95.7 0.0062 2.1E-07 50.0 3.3 29 104-132 55-83 (212)
463 1m8p_A Sulfate adenylyltransfe 95.7 0.0074 2.5E-07 57.0 4.2 27 105-131 394-420 (573)
464 2g3y_A GTP-binding protein GEM 95.7 0.0052 1.8E-07 50.3 2.8 22 109-130 39-60 (211)
465 2aka_B Dynamin-1; fusion prote 95.7 0.0045 1.6E-07 52.7 2.5 24 108-131 27-50 (299)
466 1g8f_A Sulfate adenylyltransfe 95.7 0.0065 2.2E-07 56.5 3.7 29 104-132 392-420 (511)
467 2j0v_A RAC-like GTP-binding pr 95.7 0.0058 2E-07 49.1 3.0 24 108-131 10-33 (212)
468 2yc2_C IFT27, small RAB-relate 95.7 0.0023 7.9E-08 51.1 0.5 23 108-130 21-43 (208)
469 3def_A T7I23.11 protein; chlor 95.6 0.0053 1.8E-07 51.8 2.8 24 108-131 37-60 (262)
470 3hws_A ATP-dependent CLP prote 95.6 0.0066 2.3E-07 53.6 3.4 27 106-132 50-76 (363)
471 1h65_A Chloroplast outer envel 95.6 0.0054 1.8E-07 51.9 2.7 24 108-131 40-63 (270)
472 1ofh_A ATP-dependent HSL prote 95.6 0.0073 2.5E-07 51.4 3.6 26 107-132 50-75 (310)
473 3pxi_A Negative regulator of g 95.6 0.028 9.5E-07 54.6 8.1 23 109-131 523-545 (758)
474 1x6v_B Bifunctional 3'-phospho 95.6 0.0081 2.8E-07 57.3 4.1 26 106-131 51-76 (630)
475 3cnl_A YLQF, putative uncharac 95.6 0.0057 1.9E-07 51.9 2.7 24 108-131 100-123 (262)
476 3uk6_A RUVB-like 2; hexameric 95.6 0.0075 2.6E-07 52.9 3.5 28 105-132 68-95 (368)
477 1d2n_A N-ethylmaleimide-sensit 95.6 0.0087 3E-07 50.5 3.8 28 105-132 62-89 (272)
478 2b6h_A ADP-ribosylation factor 95.5 0.0081 2.8E-07 47.8 3.4 24 106-129 28-51 (192)
479 3d8b_A Fidgetin-like protein 1 95.5 0.0097 3.3E-07 52.6 4.1 28 105-132 115-142 (357)
480 4djt_A GTP-binding nuclear pro 95.5 0.0023 7.8E-08 51.8 -0.1 22 109-130 13-34 (218)
481 3eie_A Vacuolar protein sortin 95.5 0.01 3.5E-07 51.5 4.1 28 105-132 49-76 (322)
482 2qby_B CDC6 homolog 3, cell di 95.4 0.0097 3.3E-07 52.3 3.9 26 106-131 44-69 (384)
483 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0076 2.6E-07 52.9 3.0 28 103-130 119-146 (331)
484 4dcu_A GTP-binding protein ENG 95.4 0.0049 1.7E-07 56.4 1.6 24 108-131 24-47 (456)
485 2x77_A ADP-ribosylation factor 95.4 0.0053 1.8E-07 48.4 1.7 24 106-129 21-44 (189)
486 4b4t_K 26S protease regulatory 95.3 0.011 3.8E-07 53.8 4.0 29 104-132 203-231 (428)
487 3fdi_A Uncharacterized protein 95.3 0.011 3.7E-07 48.1 3.4 26 107-132 6-31 (201)
488 4b4t_L 26S protease subunit RP 95.3 0.011 3.8E-07 53.9 3.9 30 103-132 211-240 (437)
489 2axn_A 6-phosphofructo-2-kinas 95.3 0.013 4.4E-07 54.7 4.3 26 106-131 34-59 (520)
490 4b4t_M 26S protease regulatory 95.3 0.011 3.9E-07 53.8 3.9 30 103-132 211-240 (434)
491 3cmu_A Protein RECA, recombina 95.3 0.053 1.8E-06 57.9 9.3 28 104-131 1424-1451(2050)
492 2qgz_A Helicase loader, putati 95.3 0.013 4.3E-07 50.9 3.9 25 107-131 152-176 (308)
493 2j37_W Signal recognition part 95.2 0.013 4.5E-07 54.4 4.2 28 105-132 99-126 (504)
494 2qp9_X Vacuolar protein sortin 95.2 0.011 3.9E-07 52.2 3.5 27 106-132 83-109 (355)
495 1g41_A Heat shock protein HSLU 95.2 0.011 3.8E-07 54.0 3.5 24 109-132 52-75 (444)
496 1bif_A 6-phosphofructo-2-kinas 95.2 0.014 4.7E-07 53.6 4.2 26 106-131 38-63 (469)
497 3pfi_A Holliday junction ATP-d 95.2 0.011 3.9E-07 51.2 3.4 25 108-132 56-80 (338)
498 1um8_A ATP-dependent CLP prote 95.2 0.012 4.1E-07 52.1 3.5 26 107-132 72-97 (376)
499 2gks_A Bifunctional SAT/APS ki 95.1 0.014 4.7E-07 54.8 4.1 27 105-131 370-396 (546)
500 3gj0_A GTP-binding nuclear pro 95.1 0.0078 2.7E-07 48.8 2.0 23 109-131 17-40 (221)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.2e-37 Score=274.76 Aligned_cols=175 Identities=17% Similarity=0.149 Sum_probs=142.0
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
.+++|+++||+|.|+.....+.+|++|||+|++|+++||+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 34689999999999753233447899999999999999999999999999999999998 99999 4666432
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
+...|. ++++.... ..+++.++..+.....+.+.......+.++++.+++. .+.++.+|||||||||++
T Consensus 98 ~~~~~~r~~Ig~-v~Q~~~l~--~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 98 SELTKARRQIGM-IFQHFNLL--SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHHHTTEEE-ECSSCCCC--TTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHHHhCcEEE-EeCCCccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 124555 66664322 2378888888776666654444455678899998886 567888999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||||+.+|++||+||||++||+..+++++++|.+.
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l 209 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDI 209 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.1e-37 Score=258.56 Aligned_cols=169 Identities=17% Similarity=0.104 Sum_probs=134.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
+++++++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 2 ~~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred CcEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence 35799999999998643 7799999999999999999999999999999999998 99999 46653321
Q ss_pred -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
...+. ++++.... ..+++.++..+.....+.+.......+.++++.+++. .+.++.+||+||+||+++
T Consensus 75 ~~~~~~~~~i~~-v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 75 ELSLLRNRKLGF-VFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HHHHHHHHHEEE-ECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred HHHHHHhCcEEE-EecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 12344 56554322 2367888877654444432222334567888988876 456677999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+.+|++||+||||++||+..++.+.++|.+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.7e-36 Score=273.82 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=140.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|++|+++||+|.|++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 45799999999998754 7899999999999999999999999999999999998 99999 4666422
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
....|. ++++.. ++ +.+++.+|+.+.....+.+.......+.++++.+++. .+.++.+|||||||||++||||+.
T Consensus 74 ~r~ig~-VfQ~~~-l~-p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 74 ERGVGM-VFQSYA-LY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp GSCEEE-ECTTCC-CC-TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred HCCEEE-EecCCc-CC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 123454 666543 22 3478999988877666655444456678899998886 567788999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+|++||+||||++||+..+++++++|.+.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988653
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-36 Score=273.11 Aligned_cols=168 Identities=11% Similarity=0.160 Sum_probs=135.3
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
++|+++||+|.|++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 3799999999998754 7899999999999999999999999999999999998 99999 4665321
Q ss_pred ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
....|. ++++.. ++ +.+++.+|..+.....+.+.......+.++++.+++. .+.++.+|||||||||++|||
T Consensus 76 ~~~~r~ig~-vfQ~~~-l~-p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 76 PVRERRLGY-LVQEGV-LF-PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CGGGSCCEE-ECTTCC-CC-TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred chhhCCEEE-EeCCCc-CC-CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 123555 666543 22 3478888776644333433333445678899998886 567788999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++||+||||++||+..++++++.+.+
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999876543
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.9e-36 Score=256.88 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=132.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+|+++||++.|++......+|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48899999999853222337899999999999999999999999999999999998 99999 46663221
Q ss_pred -----CCeeEEEecCCCCCcCccCCcccChHHHHHhc---CCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchh
Q 025256 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV 217 (255)
Q Consensus 149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~---g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv 217 (255)
...|. ++++.... ..+++.++..+..... +.........+.++++.+++.. +.++.+|||||+||+
T Consensus 78 ~~~~~~~i~~-v~Q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 78 TKIRRDKIGF-VFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHHHHHEEE-ECTTCCCC--TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHhhccEEE-EecCCccC--CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence 12454 66665322 2367888776644322 1121222345677888888753 567889999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|+||+.+|++||+||||++||+..++++.+++.+
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 190 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-36 Score=260.00 Aligned_cols=171 Identities=13% Similarity=0.093 Sum_probs=134.9
Q ss_pred CccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---
Q 025256 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--- 148 (255)
Q Consensus 73 ~~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--- 148 (255)
..|++|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 11 ~~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp ---CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred ccCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence 3588999999999998643 7799999999999999999999999999999999998 99999 46653221
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...|. ++++.... ..+++.++..+.....+.........+.++++.+++. .+.++..||+||+||+++|+|
T Consensus 84 ~~~~~~i~~-v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 84 HEVRKLISY-LPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp HHHHTTEEE-ECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred HHHhhcEEE-EcCCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 23454 66654322 2368888877654444432211234567888888876 356778999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++||+||||++||+..++.+.++|.+
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.3e-36 Score=263.06 Aligned_cols=169 Identities=17% Similarity=0.152 Sum_probs=136.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++|+++||++.|++.. . +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 6 ~~l~i~~ls~~y~~~~-~--~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDGT-H--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTSC-E--EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCCC-e--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 4799999999997521 1 6799999999999999999999999999999999998 99999 46664321
Q ss_pred ----CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256 149 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 149 ----~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~ 221 (255)
...|. ++++.. .++ .+++.++..+.....+.+.......+.++++.+++. .+.++..|||||+||+++|+
T Consensus 80 ~~~~~~ig~-v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr 156 (275)
T 3gfo_A 80 MKLRESIGI-VFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 156 (275)
T ss_dssp HHHHHSEEE-ECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred HHHhCcEEE-EEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 23454 666542 222 268888887766555544333345677889988886 46677899999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+.+|++||+||||++||+..++++.++|.+
T Consensus 157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~ 188 (275)
T 3gfo_A 157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188 (275)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-36 Score=261.21 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=133.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
+++|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 22 ~~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp CCSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCC
T ss_pred hheEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCcccc
Confidence 34799999999998643 7799999999999999999999999999999999998 99999 46663221
Q ss_pred -----CCeeEEEecCCCCCcCccCCcccChHHHH-HhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a 220 (255)
...+. ++++... ...+++.++..+.. ...+.........+.++++.+++. .+.++.+|||||+||+++|
T Consensus 95 ~~~~~~~i~~-v~Q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 95 LNKVREEVGM-VFQRFNL--FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp HHHHHHHEEE-ECSSCCC--CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHhCcEEE-EeCCCcC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 12344 6665432 22367888776643 223332222234567888888875 4567779999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+.+|++||+||||++||+..++++.++|.+
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=8.7e-36 Score=257.19 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=131.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
+++++++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 46799999999998744 7799999999999999999999999999999999998 99999 46653321
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHh--cC-----------CCCCCcHHHHHHHHHhhcCC--CCCCCCCC
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--~g-----------~~~~~~~~~~~~~l~~l~l~--~~~~~~~l 209 (255)
...+. ++++.... ..+++.++..+.... .+ .........+.++++.+++. .+.++..|
T Consensus 78 ~~~~~~i~~-v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 78 ELYHYGIVR-TFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp HHHHHTEEE-CCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred HHHhCCEEE-EccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 12343 55554322 236777766543211 12 11111234567888888875 46677899
Q ss_pred CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+||+++|+||+.+|++||+||||++||+..++++.++|.+
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-35 Score=266.67 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=137.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+|.|++.. +|+++||++++|++++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 34699999999998644 7799999999999999999999999999999999998 99999 4665322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
....|. ++++.. ++ +.+++.+|..+.....+.+.......+.++++.+++. .+.++.+|||||+|||++||||+.
T Consensus 74 ~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 74 DRNVGL-VFQNWA-LY-PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp GTTEEE-ECTTCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred HCcEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 123454 666543 22 3478889888766555544333345678889999886 456778999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+..+++++++|.+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1e-35 Score=267.47 Aligned_cols=169 Identities=16% Similarity=0.171 Sum_probs=134.1
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+++++||+|.|++.. +|+++||++++|++++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 44699999999998644 7799999999999999999999999999999999998 99999 4666322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
....|. ++++.. ++ +.+++.++..+.....+.+.......+.++++.+++. .+.++.+|||||+|||++||||+.
T Consensus 74 ~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 74 YREVGM-VFQNYA-LY-PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp GTTEEE-ECSSCC-CC-TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hCcEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 123554 666543 22 3478888776643222322222234677889988886 467778999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+..+++++++|.+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-35 Score=256.61 Aligned_cols=168 Identities=14% Similarity=0.138 Sum_probs=132.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 5 ~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTT
T ss_pred ceEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccccccc
Confidence 3699999999998643 7799999999999999999999999999999999998 99999 46653321
Q ss_pred ---------------CCeeEEEecCCCCCcCccCCcccChHHHH-HhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCC
Q 025256 149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 209 (255)
Q Consensus 149 ---------------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~l 209 (255)
...|. ++++... ...+++.++..+.. ...+.........+.++++.+++. .+.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~-v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTM-VFQHFNL--WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 154 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEE-ECSSCCC--CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred ccccccChhhHHHHhcceEE-EecCccc--CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence 12344 6665432 23368888877643 223332222234567888988885 35677899
Q ss_pred CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||||+||+++|+||+.+|++||+||||++||+..++.+.++|.+
T Consensus 155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 198 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 198 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999865
No 13
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-35 Score=247.44 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=133.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCe
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV 151 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~ 151 (255)
.+|+++||++.|++ . +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++... ....
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence 57999999999976 4 7899999999999999999999999999999999998 99999 4555321 2234
Q ss_pred eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-CCCCCCCCccccchhhhhhhhccCCcEE
Q 025256 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (255)
Q Consensus 152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~~a~~l~~~~~il 230 (255)
+. +.++.... ..+++.++..+.....+. . .....+.++++.+++.. +.++..||+||+||+++|++|+.+|++|
T Consensus 81 ~~-v~q~~~~~--~~~tv~enl~~~~~~~~~-~-~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 81 FF-LPEEIIVP--RKISVEDYLKAVASLYGV-K-VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp EE-ECSSCCCC--TTSBHHHHHHHHHHHTTC-C-CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EE-EeCCCcCC--CCCCHHHHHHHHHHhcCC-c-hHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 44 56654332 236788877765443343 2 23566788899888764 5667799999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHh
Q 025256 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 231 ilDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||||++||+..++.+.++|.+
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~ 178 (214)
T 1sgw_A 156 VLDDPVVAIDEDSKHKVLKSILE 178 (214)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHH
T ss_pred EEECCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999865
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.1e-35 Score=264.92 Aligned_cols=169 Identities=14% Similarity=0.228 Sum_probs=137.6
Q ss_pred cceEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----- 147 (255)
.++|+++||+|.| ++.. +|+++||+|++|++++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 12 ~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCCh
Confidence 4579999999999 7643 7799999999999999999999999999999999998 99999 4665322
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
....|. ++++.. + .+.+++.++..+.....+.+.......+.++++.+++. .+.++.+|||||+|||++|+||+
T Consensus 85 ~~r~ig~-v~Q~~~-l-~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 85 QKRNVGL-VFQNYA-L-FQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp GGSSEEE-ECGGGC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hhCcEEE-EecCcc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 123454 666543 2 23478889888766555543333345678889998886 46778899999999999999999
Q ss_pred cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|++|||||||++||+..+++++++|.+
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.8e-35 Score=255.16 Aligned_cols=167 Identities=14% Similarity=0.107 Sum_probs=132.4
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC----
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP---- 149 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~---- 149 (255)
+++++++||++.|++.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .++|.....
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 46899999999998754 7899999999999999999999999999999999998 99999 466643211
Q ss_pred ----CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 150 ----~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l 223 (255)
..+. +.++....+ .+++.++..+..... ........+.++++.+++. .+.++..|||||+||+++|+||
T Consensus 82 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 82 ALARTRAV-MRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp HHHHHEEE-ECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhheEEE-EecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 1343 555543322 256666655432211 2233455678889988876 4566779999999999999999
Q ss_pred cc------CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~------~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+. +|++||+||||++||+..+.++.++|.+
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~ 192 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999865
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.7e-35 Score=267.43 Aligned_cols=169 Identities=14% Similarity=0.130 Sum_probs=137.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC-------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------- 146 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~------- 146 (255)
|.+|+++||+|.|++.. +|+++||++++|++++|+||||||||||||+|+|+++ |++|+ .+++..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 45799999999998644 7799999999999999999999999999999999998 99999 465532
Q ss_pred --C---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 147 --K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 147 --~---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
. ....|. ++++.. ++ +.+++.+|..+.....+.+.......+.++++.+++. .+.++.+|||||+|||++
T Consensus 74 ~~~~~~~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 74 IFVPPKDRDIAM-VFQSYA-LY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp EECCGGGSSEEE-ECSCCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred ccCCHhHCCEEE-EeCCCc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence 1 123454 666543 22 3478889888766555544333345677889988886 467778999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+.+|++|||||||++||+..+++++++|.+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998865
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.9e-35 Score=266.86 Aligned_cols=169 Identities=12% Similarity=0.141 Sum_probs=131.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+|.|++.. +|+++||+|++|++++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 55799999999998644 7799999999999999999999999999999999998 99999 4666322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
....|. ++++.. ++ +.+++.++..+.....+.+.......+.++++.+++. .+.++.+|||||+|||++||||+.
T Consensus 82 ~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 82 DRNISM-VFQSYA-VW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp GGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred hCcEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 123454 666543 22 3478877776532222222222234567889988886 567788999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++|||||||++||+..+++++++|.+
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-35 Score=249.59 Aligned_cols=167 Identities=17% Similarity=0.130 Sum_probs=129.3
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++++++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 4799999999998743 7799999999999999999999999999999999998 99999 46663221
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc-CC--CCCCCCCCCccccchhhhhhh
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~-l~--~~~~~~~lS~G~~qrv~~a~~ 222 (255)
...+. ++++.... ..+++.++..+.. ............+.++++.++ +. .+.++..||+||+||+++|+|
T Consensus 78 ~~~~~i~~-v~q~~~l~--~~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 78 INRMGIAL-VPEGRRIF--PELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp HHHTTEEE-ECSSCCCC--TTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred HHhCCEEE-EecCCccC--CCCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 12454 66654322 2367777665532 111122222344567777774 53 466788999999999999999
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+.+|++||+||||++||+..++.+.++|.+
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.6e-35 Score=256.08 Aligned_cols=170 Identities=12% Similarity=0.006 Sum_probs=128.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 4799999999998643 7799999999999999999999999999999999998 99999 46654321
Q ss_pred ----CCeeEEEecCCCCCcCccCCcccChHHHHHh----cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhh
Q 025256 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (255)
Q Consensus 149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~----~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ 218 (255)
...+. +.++........+++.++..+.... ++.+.......+.++++.+++. .+.++.+||+||+||++
T Consensus 93 ~~~~~~i~~-v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 93 ETVRQHIGF-VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHHTTEEE-ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred HHHcCcEEE-EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 22444 5554322122224666665432110 1111111234567788888875 45677899999999999
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+||+.+|++||+||||++||+..++.+.++|.+
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~ 206 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDS 206 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.4e-35 Score=263.81 Aligned_cols=171 Identities=14% Similarity=0.165 Sum_probs=134.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------ 147 (255)
|.+|+++||+|.|++ ....+|+++||++++|++++|+||||||||||||+|+|+++ |++|+ .+++...
T Consensus 1 M~~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 457999999999976 22115699999999999999999999999999999999998 99999 4655321
Q ss_pred -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (255)
Q Consensus 148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a 220 (255)
....|. ++++... + +.+++.++..+.....+.+.......+.++++.+++. .+.++.+|||||+|||++|
T Consensus 76 ~~~~~~r~ig~-v~Q~~~l-~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 76 IVPPEDRKIGM-VFQTWAL-Y-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp SSCGGGSCEEE-EETTSCC-C-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred cCChhhCCEEE-EeCCCcc-C-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 123454 6665432 2 3478888776643333333222235577889988886 4677789999999999999
Q ss_pred hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+.+|++|||||||++||+..+++++++|.+
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-34 Score=248.85 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=129.1
Q ss_pred ceEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
++++++||++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|++.. ....+.
T Consensus 3 ~~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----~~~i~~- 70 (253)
T 2nq2_C 3 KALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----YQSIGF- 70 (253)
T ss_dssp EEEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----CSCEEE-
T ss_pred ceEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----eccEEE-
Confidence 3799999999998 533 6799999999999999999999999999999999997 99998541 234454
Q ss_pred EecCCCCCcCccCCcccChHHHHHhc-CC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ 228 (255)
++++..... .+++.++..+..... +. ........+.++++.+++. .+.++..||+||+||+++|+||+.+|+
T Consensus 71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 666543322 357777665532211 21 1112234567888888876 456778999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 229 ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+||||++||+..++.+.++|.+
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2e-34 Score=249.81 Aligned_cols=171 Identities=15% Similarity=0.108 Sum_probs=131.2
Q ss_pred eEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CC
Q 025256 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PP 149 (255)
Q Consensus 77 ~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~ 149 (255)
+++++||++.|+ +......+|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++... +.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence 589999999997 21000126799999999999999999999999999999999998 99999 4665322 12
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC----CCCCCCCCCccccchhhhhhhhcc
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
..|. +.++..... ..+++.++..+..... .........+.++++.+++. .+.++..||+||+||+++|++|+.
T Consensus 79 ~i~~-v~q~~~~~~-~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 79 NIGI-AFQYPEDQF-FAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp GEEE-ECSSGGGGC-CCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hEEE-Eeccchhhc-CCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence 3454 666531111 1257777665532222 22333456678899999886 466778999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|++||+||||++||+..++.+.++|.+
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~ 183 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEK 183 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.3e-34 Score=255.44 Aligned_cols=163 Identities=14% Similarity=0.163 Sum_probs=134.2
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------C
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------P 149 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------~ 149 (255)
|++++||+|.|++ . +|+++||++++|++++|+||||||||||||+|+|+++ |++|+ .+++.... .
T Consensus 1 ml~~~~l~~~y~~--~---~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN--F---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSS--C---EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECC--E---EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 4789999999975 2 5699999999999999999999999999999999998 99999 46664321 1
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..|. ++++.. + .+.+++.+|..+.....+.+.. ..+.++++.+++. .+.++.+|||||+||+++||||+.+|
T Consensus 73 ~ig~-v~Q~~~-l-~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 73 DIAF-VYQNYS-L-FPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp TCEE-ECTTCC-C-CTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred cEEE-EecCcc-c-CCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3455 666543 2 2347888988876655444332 6678899999886 46677899999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++|||||||++||+..+++++++|.+
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSV 172 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.5e-34 Score=247.04 Aligned_cols=170 Identities=18% Similarity=0.070 Sum_probs=123.6
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCcc-ccCCCCCCC--
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVKPP-- 149 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~~~~~~~-- 149 (255)
|++++++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+ ++ |++|+ .+++.....
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 45799999999998643 77999999999999999999999999999999998 66 89999 466532211
Q ss_pred -------CeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCC--CCcHHHHHHHHHhhcCC---CCCCCCC-CCccccc
Q 025256 150 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGD 215 (255)
Q Consensus 150 -------~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~--~~~~~~~~~~l~~l~l~---~~~~~~~-lS~G~~q 215 (255)
..+. ++++.... ..+++.++..+.... .+... ......+.++++.+++. .+.++.. ||+||+|
T Consensus 74 ~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 74 PDERARKGLFL-AFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKK 150 (250)
T ss_dssp HHHHHHTTBCC-CCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHH
T ss_pred HHHHHhCcEEE-eccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 1222 44443321 235666766553321 22111 11134567788888883 3566777 9999999
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+++|+||+.+|++||+||||++||+..++.+.++|.+.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM 189 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-34 Score=245.51 Aligned_cols=162 Identities=11% Similarity=0.058 Sum_probs=124.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~ 149 (255)
|++++||++.|++ +|+++||++++ ++++|+||||||||||+|+|+|+++ |++|+ .+++... ..
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 3789999999974 47999999999 9999999999999999999999997 99999 4555321 12
Q ss_pred CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
..|. ++++... ...+++.++..+.....+. ......+.++++.+++. .+.++..|||||+||+++|+|++.+|
T Consensus 71 ~i~~-v~q~~~l--~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 145 (240)
T 2onk_A 71 GIGF-VPQDYAL--FPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp CCBC-CCSSCCC--CTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEE-EcCCCcc--CCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3444 4554322 1235666655432111110 01234567888888876 45667799999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
++||+||||++||+..++.+.+++.+
T Consensus 146 ~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 146 RLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.7e-33 Score=244.16 Aligned_cols=170 Identities=16% Similarity=0.092 Sum_probs=126.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCcc-ccCCCCCC---
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP--- 148 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~~~~~~--- 148 (255)
+++++++||++.|++.. +|+++||+|++|++++|+||||||||||+|+|+|++ + |++|+ .+++....
T Consensus 18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 45799999999997643 779999999999999999999999999999999984 4 88999 46653211
Q ss_pred ------CCeeEEEecCCCCCcCccCCcccChHHHHHh----cCCCC---CCcHHHHHHHHHhhcCC---CCCCCC-CCCc
Q 025256 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDH 211 (255)
Q Consensus 149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~----~g~~~---~~~~~~~~~~l~~l~l~---~~~~~~-~lS~ 211 (255)
...+. +.++.... ..+++.++....... .+... ......+.++++.+++. .+.++. .||+
T Consensus 91 ~~~~~~~~i~~-v~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 167 (267)
T 2zu0_C 91 PEDRAGEGIFM-AFQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 167 (267)
T ss_dssp HHHHHHHTEEE-ECSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred HHHHhhCCEEE-EccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 01333 55554322 235666655443211 22211 11123567888888884 244555 4999
Q ss_pred cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
||+||+++|+||+.+|++||+||||++||+..++.+.++|.+.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 210 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 27
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=7.2e-33 Score=239.56 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=129.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD 150 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~ 150 (255)
|++++||++.|++......+|+++||+++ |++++|+||||||||||+|+|+|++ |++|+ .+++... +..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhh
Confidence 48899999999761000117799999999 9999999999999999999999998 89999 4555211 223
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH 227 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~ 227 (255)
.+.+++++... .+++.++..+..... ......+.++++.+++. .+.++..||+||+||+++|+||+.+|
T Consensus 76 i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 76 YSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp EEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 44125555432 367878776644322 23456678889998886 45677899999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 228 KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 228 ~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++||+||||++||+..++.+.++|.+.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~ 174 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEY 174 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHS
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh
Confidence 999999999999999999999998753
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.98 E-value=1.3e-32 Score=235.35 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=122.1
Q ss_pred eEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
|++++||++.| ++.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++...
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 47899999999 4432 6799999999999999999999999999999999998 99999 4655221
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC-------------CCCCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------------VYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~-------------~~~~~lS~G~ 213 (255)
+...+. ++++... +. .++.++..+ +.........+.++++.+++... ..+..||+||
T Consensus 74 ~~~~i~~-v~q~~~l-~~--~tv~enl~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 74 WRSQIGF-VSQDSAI-MA--GTIRENLTY-----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CTTTCCE-ECCSSCC-CC--EEHHHHTTS-----CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHhhEEE-EcCCCcc-cc--ccHHHHHhh-----hccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 223454 5555432 21 244444332 11112334556677777766421 2345899999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.98 E-value=6.3e-33 Score=236.58 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=116.7
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (255)
|.+++++||++.|++.... +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++ ..+.
T Consensus 1 M~~l~~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~~ 70 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVAY 70 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEEE
T ss_pred CCeEEEEEEEEEeCCCCCc--eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEEE
Confidence 4469999999999731112 6799999999999999999999999999999999998 89998 4554 2454
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHH---HHhhcCC-------CCCCCCCCCccccchhhhhhhh
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---l~~l~l~-------~~~~~~~lS~G~~qrv~~a~~l 223 (255)
++++... + .+++.++..+.. ... ........+. .+.++.. ...++..||+||+||+++|+||
T Consensus 71 -v~Q~~~~-~--~~tv~enl~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL 142 (237)
T 2cbz_A 71 -VPQQAWI-Q--NDSLRENILFGC---QLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 142 (237)
T ss_dssp -ECSSCCC-C--SEEHHHHHHTTS---CCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred -EcCCCcC-C--CcCHHHHhhCcc---ccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 6665432 2 246655554311 111 1111112121 1222221 2456779999999999999999
Q ss_pred ccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~ 252 (255)
+.+|++||+||||++||+..++.+.+++.
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999873
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.98 E-value=1.7e-32 Score=235.28 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=120.8
Q ss_pred eEEEccceeecc--ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256 77 VVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~--~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----- 148 (255)
-++++||++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 488999999993 322 6799999999999999999999999999999999998 99999 46663221
Q ss_pred ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCcc
Q 025256 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHG 212 (255)
Q Consensus 149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G 212 (255)
...+. ++++... +. .++.++..+ +.. ......+.++++.+++. ....+..||||
T Consensus 80 ~~~~~i~~-v~Q~~~l-~~--~tv~enl~~-----~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 149 (247)
T 2ff7_A 80 WLRRQVGV-VLQDNVL-LN--RSIIDNISL-----ANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 149 (247)
T ss_dssp HHHHHEEE-ECSSCCC-TT--SBHHHHHTT-----TCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred HHHhcEEE-EeCCCcc-cc--ccHHHHHhc-----cCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence 12344 5665432 21 355554433 111 12334455555555442 12345799999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|+||+++|+||+.+|++||+||||++||+..++.+.++|.+
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=3.8e-33 Score=242.40 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=122.1
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
.+|+++||++.|++.. ...+|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 15 ~~l~~~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CCEEEEEEEECCTTCT-TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHH
T ss_pred ceEEEEEEEEEeCCCC-CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHH
Confidence 4699999999997510 1126799999999999999999999999999999999998 99999 46653211
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH------HHHHHHHHhh--cCC--CCCCCCCCCccccch
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP------LLLLNCLKNL--RNQ--GSVYAPSFDHGVGDP 216 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~------~~~~~~l~~l--~l~--~~~~~~~lS~G~~qr 216 (255)
...+. ++++... +. .++.+++.+... ........ ..+.++++.+ ++. .+.++..||+||+||
T Consensus 91 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 91 LHTQVAA-VGQEPLL-FG--RSFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164 (271)
T ss_dssp HHHHEEE-ECSSCCC-CS--SBHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred HhccEEE-EecCCcc-cc--ccHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence 12344 6665532 22 366555543110 01100000 0123445555 332 345677999999999
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+++|+||+.+|++||+||||++||+..++.+.++|.+.
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.97 E-value=4.6e-31 Score=223.94 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=113.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (255)
.+++++||++.|+...+. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|++ +++ ..+.
T Consensus 5 ~~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~~- 73 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF- 73 (229)
T ss_dssp EEEEEEEEEECSSTTSCC--SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEEE-
T ss_pred ceEEEEEEEEEeCCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEEE-
Confidence 479999999999631112 6799999999999999999999999999999999997 999983 554 2444
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccccchhhhhh
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~~a~ 221 (255)
++++... +. .++.++..+ +.. .......+.++.+++. .......||+||+||+++|+
T Consensus 74 v~q~~~~-~~--~tv~enl~~-----~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 74 CSQFSWI-MP--GTIKENIIF-----GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp ECSSCCC-CS--BCHHHHHHT-----TSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred EecCCcc-cC--CCHHHHhhc-----cCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 5555432 21 255554432 211 1112222333322221 11235799999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll 251 (255)
+++.+|++||+||||++||+..++.+.+++
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESC 173 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999863
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=1.6e-31 Score=229.39 Aligned_cols=157 Identities=19% Similarity=0.115 Sum_probs=123.4
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
+++++||++. . +|+++||++++|++++|+||||||||||+|+|+|+++ |+ |+ .+++....
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 6999999987 2 7899999999999999999999999999999999997 89 99 46653211
Q ss_pred -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (255)
Q Consensus 149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~ 225 (255)
...+. +.++.... ..+++.++..+. .... .....+.++++.+++. .+.++..||+||+||+++|++|+.
T Consensus 72 ~~~i~~-v~q~~~~~--~~~tv~e~l~~~----~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 143 (249)
T 2qi9_C 72 ALHRAY-LSQQQTPP--FATPVWHYLTLH----QHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143 (249)
T ss_dssp HHHEEE-ECSCCCCC--TTCBHHHHHHTT----CSST-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred hceEEE-ECCCCccC--CCCcHHHHHHHh----hccC-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 12344 55554322 235666655431 1111 1255677888988876 456677999999999999999999
Q ss_pred CCc-------EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 QHK-------VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ~~~-------ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+ +||+||||++||+..++.+.++|.+
T Consensus 144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999 9999999999999999999999865
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=1.7e-31 Score=230.68 Aligned_cols=164 Identities=13% Similarity=0.052 Sum_probs=120.7
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
.+|+++||++.|++.. ...+|+++||+|++|++++|+||||||||||+|+|+|+++ | +|+ .+++...
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 4699999999997531 1126799999999999999999999999999999999995 5 798 4665321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~ 213 (255)
+...+. ++++... +. .++.++..+ +... .......++++.+++. ...++..||+||
T Consensus 91 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~-----~~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGq 160 (260)
T 2ghi_A 91 IRSIIGI-VPQDTIL-FN--ETIKYNILY-----GKLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE 160 (260)
T ss_dssp HHTTEEE-ECSSCCC-CS--EEHHHHHHT-----TCTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHH
T ss_pred HhccEEE-EcCCCcc-cc--cCHHHHHhc-----cCCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHH
Confidence 123454 6665532 21 355555433 2111 2233444555544431 124567999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||+++|+||+.+|++||+||||++||+..++.+.++|.+.
T Consensus 161 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998753
No 35
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=3e-31 Score=233.85 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=121.9
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
..|+++||++.|++. .. +|+++||+|++|++++|+||||||||||+++|+|++. |++|+ .+++....
T Consensus 52 ~~i~~~~vs~~y~~~-~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RE--TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CCEEEEEEEEESSTT-CE--EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred CeEEEEEEEEEcCCC-Cc--eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence 359999999999642 12 6799999999999999999999999999999999998 99999 46664321
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccc
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~ 213 (255)
...+. ++++.... . .++.+|+.+ +.+. .......++++.+++. .......|||||
T Consensus 126 ~r~~i~~-v~Q~~~lf-~--~Tv~eNi~~-----~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq 195 (306)
T 3nh6_A 126 LRSHIGV-VPQDTVLF-N--DTIADNIRY-----GRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195 (306)
T ss_dssp HHHTEEE-ECSSCCCC-S--EEHHHHHHT-----TSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH
T ss_pred HhcceEE-EecCCccC-c--ccHHHHHHh-----hccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH
Confidence 23454 67765432 2 355555433 2211 2233444444443331 123446899999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+||+++||||+.+|+||||||||++||+...+.+.++|.+
T Consensus 196 rQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=3.1e-31 Score=240.70 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=123.0
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
..|+++||+|.|+.... .+|+++||+|++||+++|+||||||||||||+|+|++ +++|+ .+++....
T Consensus 18 ~~i~~~~l~~~y~~~~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGN--AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CCEEEEEEEEESSSSSC--CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHHH
T ss_pred CeEEEEEEEEEecCCCe--EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChHH
Confidence 46999999999943111 2779999999999999999999999999999999998 67888 46664321
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCC-----------CCccc
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS-----------FDHGV 213 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------lS~G~ 213 (255)
...+. ++++... +. .++.+|. ..........+.++++.+++. .+.++.. |||||
T Consensus 92 ~rr~ig~-v~Q~~~l-f~--~tv~enl-------~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq 160 (390)
T 3gd7_A 92 WRKAFGV-IPQKVFI-FS--GTFRKNL-------DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160 (390)
T ss_dssp HHHTEEE-ESCCCCC-CS--EEHHHHH-------CTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred HhCCEEE-EcCCccc-Cc--cCHHHHh-------hhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence 23444 5555432 22 3444433 222233456677888888775 3444444 99999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|||++||||+.+|++|||||||++||+..+++++++|.+
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.96 E-value=3.2e-29 Score=238.91 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=125.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
..++++||++.|++..+. +|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 340 ~~i~~~~v~~~y~~~~~~--~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKP--ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTN 414 (582)
T ss_pred CeEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHH
Confidence 369999999999752112 6799999999999999999999999999999999998 99999 4666321
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-------------CCCCCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------SVYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~lS~G~ 213 (255)
+...+. ++++..... .++.+|..+ +.....+.+.+.++++.+++.. ......|||||
T Consensus 415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 415 LRRHFAL-VSQNVHLFN---DTIANNIAY-----AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred HhcCeEE-EcCCCcccc---ccHHHHHhc-----cCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 223454 676654322 355555543 2101234455666666655431 12346899999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|||+++|||++.+|+++|+||||++||+...+.+.+.+.+.
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988753
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=9.8e-29 Score=235.53 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=125.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------ 148 (255)
.+++++||++.|++..+ .+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 340 ~~i~~~~v~~~y~~~~~--~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREV--PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CCEEEEEEEECSSSSSC--CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHH
T ss_pred CcEEEEEEEEEcCCCCC--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHH
Confidence 35999999999974211 26799999999999999999999999999999999998 99999 46663321
Q ss_pred --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccc
Q 025256 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (255)
Q Consensus 149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~ 213 (255)
...+. ++++..... .++.+|..+ +.....+.+.+.++++.+++. .......|||||
T Consensus 415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 415 LRNQVAL-VSQNVHLFN---DTVANNIAY-----ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HHHTEEE-ECSSCCCCS---SBHHHHHHT-----TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HHhhCeE-EccCCcCCC---CCHHHHHhc-----cCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 13454 677664322 366665543 210123445566666665542 122456899999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|||++.+|+++|+||||++||+...+++.+.+.+
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.95 E-value=1.1e-28 Score=235.61 Aligned_cols=163 Identities=16% Similarity=0.157 Sum_probs=124.7
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------- 148 (255)
++++||++.|++.. ...+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 342 i~~~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHHH
Confidence 89999999997531 1126799999999999999999999999999999999998 99999 46663321
Q ss_pred CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC--CCcHHHHHHHHHhhcCC---------CCC----CCCCCCccc
Q 025256 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV 213 (255)
Q Consensus 149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~ 213 (255)
...+. ++++.... . .++.+|..+ +.+. ..+.+.+.++++.+++. .+. ....|||||
T Consensus 418 ~~i~~-v~Q~~~l~-~--~tv~eni~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq 488 (595)
T 2yl4_A 418 SKIGT-VSQEPILF-S--CSIAENIAY-----GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQ 488 (595)
T ss_dssp HSEEE-ECSSCCCC-S--SBHHHHHHT-----TSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHH
T ss_pred hceEE-EccCCccc-C--CCHHHHHhh-----cCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHH
Confidence 13444 67765432 2 366665543 2221 23455666677666542 222 347899999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|||++.+|+++|+||||++||+...+.+.+.+.+
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.95 E-value=9.7e-29 Score=216.44 Aligned_cols=150 Identities=11% Similarity=0.134 Sum_probs=100.1
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (255)
++++++||++.+ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|++ +++ ..+.
T Consensus 39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~- 103 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF- 103 (290)
T ss_dssp -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEE-
T ss_pred ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEE-
Confidence 469999999864 22 7799999999999999999999999999999999997 899984 554 2444
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccccchhhhhh
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~~a~ 221 (255)
++++... +. .++.++.. +.. .........++.+++. ....+..|||||+||+++|+
T Consensus 104 v~Q~~~l-~~--~tv~enl~------~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr 172 (290)
T 2bbs_A 104 CSQNSWI-MP--GTIKENII------GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172 (290)
T ss_dssp ECSSCCC-CS--SBHHHHHH------TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred EeCCCcc-Cc--ccHHHHhh------Ccc--cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence 5655432 22 25555443 211 1111222233322221 11234699999999999999
Q ss_pred hhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (255)
Q Consensus 222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll 251 (255)
+|+.+|++||+||||++||+..++.+.+++
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESC 202 (290)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred HHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 999999999999999999999999999863
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=1.8e-28 Score=233.58 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=121.7
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||++.|++... .+|+|+||++++||+++|+||||||||||+++|+|++. |++|+ .++|...
T Consensus 339 ~i~~~~v~~~y~~~~~--~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEA--PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSSSC--CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCCC--cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 5899999999975322 26799999999999999999999999999999999998 99999 4666322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------C----CCCCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~~ 214 (255)
+...+. ++++..... .++.+|..+ +.+. ...+...+.++..++. . ......||||||
T Consensus 414 r~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 414 RNQIGL-VQQDNILFS---DTVKENILL-----GRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp HHTEEE-ECSSCCCCS---SBHHHHHGG-----GCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred hhheEE-EeCCCccCc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 123454 677654322 255555432 2222 2334444555444331 1 123358999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 522 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 42
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=7.5e-28 Score=227.03 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=122.0
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
.++++++++++.|++. .+..++|+|++||++||+||||||||||+|+|+|+++ |++|++ +++ ...+.
T Consensus 267 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~----~~i~~ 334 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEK----QILSY 334 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSC----CCEEE
T ss_pred cceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC----eeeEe
Confidence 3579999999999863 4577899999999999999999999999999999998 999985 432 22333
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
+.++-.. ....++.++.... ..... ........++++.+++. .+.++..|||||+|||++|++|+.+|++||
T Consensus 335 -~~q~~~~--~~~~tv~~~l~~~--~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl 408 (538)
T 3ozx_A 335 -KPQRIFP--NYDGTVQQYLENA--SKDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408 (538)
T ss_dssp -ECSSCCC--CCSSBHHHHHHHH--CSSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred -echhccc--ccCCCHHHHHHHh--hhhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4443221 1124555544331 11111 11223456677777765 456778999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHhh
Q 025256 232 VDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||||++||+..+.++.++|.+.
T Consensus 409 LDEPT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 409 LDQPSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998753
No 43
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=1.4e-27 Score=228.08 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=123.5
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++++++|+++.|++. .++.++|++++||+++|+||||||||||+|+|+|+++ |++|++.. ....+. +
T Consensus 356 ~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~----~~~i~~-v 422 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEW----DLTVAY-K 422 (607)
T ss_dssp EEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCC----CCCEEE-E
T ss_pred eEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE----eeEEEE-E
Confidence 579999999999762 4699999999999999999999999999999999997 99998532 123454 5
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEe
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililD 233 (255)
+++.... ..+++.++....... .. .......++++.+++. .+.++..|||||+|||++|++|+.+|++||||
T Consensus 423 ~Q~~~~~--~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 423 PQYIKAE--YEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp CSSCCCC--CSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ecCccCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 6654321 225554443322000 00 1234567788888875 35667799999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHh
Q 025256 234 GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 234 Ep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++||+.++.++.++|.+
T Consensus 497 EPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 44
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=3.3e-28 Score=232.06 Aligned_cols=163 Identities=18% Similarity=0.134 Sum_probs=120.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------- 147 (255)
..++++||++.|++..+. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 340 ~~i~~~~v~~~y~~~~~~--~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~ 414 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDP--VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKD 414 (587)
T ss_dssp CCEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHH
T ss_pred CcEEEEEEEEEcCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHH
Confidence 359999999999653222 6799999999999999999999999999999999998 99999 4666432
Q ss_pred -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------C----CCCCCCCCCccc
Q 025256 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGV 213 (255)
Q Consensus 148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~ 213 (255)
+...+. ++++..... .++.+|.. ++.+ ....+...+.++..++ + .......|||||
T Consensus 415 ~r~~i~~-v~Q~~~lf~---~tv~eni~-----~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 415 LRGHISA-VPQETVLFS---GTIKENLK-----WGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp HHHHEEE-ECSSCCCCS---EEHHHHHT-----TTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred HHhheEE-ECCCCcCcC---ccHHHHHh-----ccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 122444 677654322 24444432 2222 2233334344433322 2 134566899999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|||++.+|+++|+||||++||+...+++.+.+.+
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=1.8e-27 Score=224.74 Aligned_cols=160 Identities=16% Similarity=0.073 Sum_probs=122.9
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (255)
.++++++|+++.|++. .++.++|+|++||++||+||||||||||+|+|+|+++ |++|++.. ....+.
T Consensus 285 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~----~~~i~~- 351 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW----DLTVAY- 351 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC----CCCEEE-
T ss_pred CeEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE----CceEEE-
Confidence 3579999999999762 4699999999999999999999999999999999997 99998532 223454
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ilil 232 (255)
++++.... ..+++.++....... .. .......++++.+++. .+.++..|||||+|||++|++|+.+|++||+
T Consensus 352 v~Q~~~~~--~~~tv~~~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlL 425 (538)
T 1yqt_A 352 KPQYIKAD--YEGTVYELLSKIDAS-KL---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLL 425 (538)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHHHH-HH---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EecCCcCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 66654321 224554433221000 11 1234456777777775 3566779999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHh
Q 025256 233 DGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 233 DEp~~~LD~~~~~~l~~ll~~ 253 (255)
||||++||+.+++++.++|.+
T Consensus 426 DEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 426 DEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp ECTTTTCCHHHHHHHHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=4.9e-28 Score=231.32 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=119.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++.. . +|+|+||++++|++++|+||||||||||+++|+|++. |++|+ .++|...
T Consensus 354 ~i~~~~v~~~y~~~~-~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKK-P--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSSS-C--SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCCC-c--cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence 589999999997521 2 6799999999999999999999999999999999998 99999 4666322
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (255)
+...+. ++++..... .++.+|..+ +.+. ...+...++++..++. .+. ....||||||
T Consensus 428 r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 428 RSSIGI-VLQDTILFS---TTVKENLKY-----GNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHEEE-ECTTCCCCS---SBHHHHHHS-----SSTT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HhceEE-EeCCCcccc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 112444 677664322 355555432 2221 1223333444333321 111 1248999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=2.5e-27 Score=226.20 Aligned_cols=160 Identities=16% Similarity=0.088 Sum_probs=114.2
Q ss_pred ceEEE--------ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------
Q 025256 76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------ 141 (255)
Q Consensus 76 ~~l~i--------~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~------ 141 (255)
.+|++ +||++.|++. . .+++++| ++++|+++||+||||||||||+|+|+|++. |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~--~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~ 154 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVN--A-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN 154 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTT--C-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred ceEEEecCCccccCCeEEEECCC--C-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence 35777 8999999763 1 2679999 999999999999999999999999999997 999973
Q ss_pred ----cCCCCC----------CCCeeEEEecCCCCCcCc--cCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CC
Q 025256 142 ----FDSQVK----------PPDVATVLPMDGFHLYLS--QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS 203 (255)
Q Consensus 142 ----~~~~~~----------~~~~g~~i~~d~~~~~~~--~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~ 203 (255)
+.+... ....+. +.+. ...... ..++.++.. . .. ....+.++++.+++. .+
T Consensus 155 ~~~~~~G~~~~~~~~~~~~~~~~i~~-~~q~-~~~~~~~~~~tv~e~l~----~---~~--~~~~~~~~L~~lgL~~~~~ 223 (607)
T 3bk7_A 155 VIRAFRGNELQNYFERLKNGEIRPVV-KPQY-VDLLPKAVKGKVRELLK----K---VD--EVGKFEEVVKELELENVLD 223 (607)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEE-ECSC-GGGGGGTCCSBHHHHHH----H---TC--CSSCHHHHHHHTTCTTGGG
T ss_pred hhheeCCEehhhhhhhhhhhhcceEE-eech-hhhchhhccccHHHHhh----h---hH--HHHHHHHHHHHcCCCchhC
Confidence 222110 011121 1111 000000 001111111 1 01 112356788888876 35
Q ss_pred CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 204 ~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.++.+|||||+||+++|+||+.+|++|||||||++||+..++++.++|.+
T Consensus 224 ~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 273 (607)
T 3bk7_A 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 67779999999999999999999999999999999999999999999875
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=8.3e-27 Score=220.14 Aligned_cols=159 Identities=15% Similarity=0.071 Sum_probs=110.4
Q ss_pred EEE-ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc----------cCCCC
Q 025256 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQV 146 (255)
Q Consensus 78 l~i-~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~----------~~~~~ 146 (255)
.++ +||+|.|++. . .+++++| +|++||++||+||||||||||+|+|+|++. |++|++ +++..
T Consensus 21 ~~~~~~ls~~yg~~--~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--A-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTT--C-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCc--c-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 344 5899999763 1 2679999 999999999999999999999999999997 999973 22221
Q ss_pred C----------CCCeeEEEecCCCCCcCc-cCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccc
Q 025256 147 K----------PPDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 213 (255)
Q Consensus 147 ~----------~~~~g~~i~~d~~~~~~~-~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~ 213 (255)
. ....+. +.+.-...... ..++.++. .... ....+.++++.+++. .+.++.+|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~~~v~e~~----~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVV-KPQYVDLIPKAVKGKVIELL----KKAD-----ETGKLEEVVKALELENVLEREIQHLSGGE 163 (538)
T ss_dssp HHHHHHHHHTTSCCCEE-ECSCGGGSGGGCCSBHHHHH----HHHC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred HHHHHHHHHHHhhhhhh-hhhhhhhcchhhhccHHHHH----hhhh-----HHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence 0 011122 11110000000 00111111 1111 112356788888876 356677999999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|||++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 203 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999865
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-25 Score=212.41 Aligned_cols=156 Identities=18% Similarity=0.202 Sum_probs=114.7
Q ss_pred ccceeeccccccccccccccceecCCC-----eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 81 ~~lsk~y~~~~~~i~~l~~vsl~i~~G-----eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
.++.+.|++.. . ++++++|++.+| |++||+||||||||||+|+|+|+++ |++|+.+. ....+. +
T Consensus 350 ~~~~~~y~~~~-~--~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~----~~~i~~-~ 418 (608)
T 3j16_B 350 ASRAFSYPSLK-K--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIP----KLNVSM-K 418 (608)
T ss_dssp SSSCCEECCEE-E--ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCC----SCCEEE-E
T ss_pred cceeEEecCcc-c--ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCcc----CCcEEE-e
Confidence 67788886532 2 569999999998 7899999999999999999999998 99997321 122333 4
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEe
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililD 233 (255)
.++-...+ ..++.++.. ....+ .........++++.+++. .+.++..|||||+|||++|++|+.+|++||+|
T Consensus 419 ~q~~~~~~--~~tv~e~~~--~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 419 PQKIAPKF--PGTVRQLFF--KKIRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp CSSCCCCC--CSBHHHHHH--HHCSS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred cccccccC--CccHHHHHH--HHhhc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 44322111 123333221 11111 112344566788888876 46778899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHh
Q 025256 234 GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 234 Ep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++||+.++.++.++|.+
T Consensus 493 EPT~gLD~~~~~~i~~ll~~ 512 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRR 512 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=2.6e-26 Score=235.81 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=128.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
-|+++||+++|++.. ...+|+|+||+|++||.+||+||||||||||+++|.|++. |++|+ .+||...
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 589999999997532 2236799999999999999999999999999999999998 99999 5777432
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGV 213 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~ 213 (255)
+...+. |+++.+... -++.+|+ .+|. +.+...+.+.++++..++. .+.. ...|||||
T Consensus 1152 R~~i~~-V~Qdp~LF~---gTIreNI-----~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A 1152 RSQIAI-VSQEPTLFD---CSIAENI-----IYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp HTTEEE-ECSSCCCCS---EEHHHHH-----SSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred HhheEE-ECCCCEeeC---ccHHHHH-----hccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence 234554 888876543 2444443 2343 3455666777777665542 2322 34799999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++|||++.+|+||||||||+.||+++.+.+.+.|++
T Consensus 1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.92 E-value=7e-26 Score=224.24 Aligned_cols=170 Identities=14% Similarity=0.154 Sum_probs=120.2
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (255)
.++++++|+++.|++..+. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|++ ++++. ..+.
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~--iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~---~I~y 740 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP--QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC---RIAY 740 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC--SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---CEEE
T ss_pred CceEEEEeeEEEeCCCCce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---ceEe
Confidence 3579999999999752112 6799999999999999999999999999999999997 999994 43321 1111
Q ss_pred EEecCC-----------------------CCC---------------------------------------------c--
Q 025256 154 VLPMDG-----------------------FHL---------------------------------------------Y-- 163 (255)
Q Consensus 154 ~i~~d~-----------------------~~~---------------------------------------------~-- 163 (255)
+.++. ... +
T Consensus 741 -v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 741 -IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp -ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred -eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 11110 000 0
Q ss_pred --------------CccCCcccChH-------H-H-----------HHhcCCCCCCcHHHHHHHHHhhcCCC----CCCC
Q 025256 164 --------------LSQLDAMEDPK-------E-A-----------HARRGAPWTFNPLLLLNCLKNLRNQG----SVYA 206 (255)
Q Consensus 164 --------------~~~l~~~e~~~-------~-~-----------~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~ 206 (255)
...++..++.. . . ....+.........+.++++.+++.. +.++
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~ 899 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence 00011111100 0 0 00123222334456788899998852 4567
Q ss_pred CCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 207 ~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
..|||||+||+++|++|+.+|++|||||||++||+.+...+.++|.+
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~ 946 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999998864
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-25 Score=214.50 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=108.8
Q ss_pred cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC------------CCCC--
Q 025256 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD------------SQVK-- 147 (255)
Q Consensus 82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~------------~~~~-- 147 (255)
+++++|+... ..+++++ .+++|+++||+||||||||||+|+|+|+++ |++|++.. +...
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 6778887532 1345555 689999999999999999999999999998 99997521 1000
Q ss_pred ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (255)
Q Consensus 148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~ 219 (255)
.......+. ..+ .............................+.++++.+++. .+..+..|||||+||+++
T Consensus 155 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 155 YFTKMLEDDIKAIIK-PQY-VDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHHHHHHTSCCCEEE-CCC-TTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhc-hhh-hhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 000000000 000 0000000000000011111111223345677888988886 467788999999999999
Q ss_pred hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
|+||+.+|++||+||||++||+..+..+.+++.+.
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l 267 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998763
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=2.5e-25 Score=228.14 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=122.5
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.++++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|+|++. |++|+ .++|...
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 589999999997532 2236799999999999999999999999999999999998 99999 4776432
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcC---------CCCC----CCCCCCccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV 213 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~ 213 (255)
+...+. ++++..... .++.+|+.+ +.+ .....+...+.++..++ +.+. ....|||||
T Consensus 1106 r~~i~~-v~Q~~~l~~---~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A 1106 RAQLGI-VSQEPILFD---CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp TTSCEE-EESSCCCCS---SBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred HhceEE-ECCCCcccc---ccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHH
Confidence 234554 788764322 354444322 221 12233444444444332 1111 235899999
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
|||+++||+|+.+|+|||+||||++||+.+.+.+.+.+++
T Consensus 1177 ~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp HHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=2.1e-25 Score=228.71 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=121.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------- 147 (255)
.|+++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|.|++. |++|+ .++|...
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 489999999997532 2237799999999999999999999999999999999998 99999 4666321
Q ss_pred CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHh---------hcCCCC----CCCCCCCcccc
Q 025256 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGS----VYAPSFDHGVG 214 (255)
Q Consensus 148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~l~~~----~~~~~lS~G~~ 214 (255)
+...+. ++++..... .++.+|+.+.. + ....+.+.+.++. +..+.+ .....||||||
T Consensus 463 r~~i~~-v~Q~~~l~~---~ti~eNi~~g~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 463 REIIGV-VSQEPVLFA---TTIAENIRYGR-----E-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp HHHEEE-ECSSCCCCS---SCHHHHHHHHC-----S-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred HhheEE-EcCCCccCC---ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 112454 777765332 36666654421 1 1223333333332 222222 24458999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||++.+|+|||+||||++||+...+.+.+.++.
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 571 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888764
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.92 E-value=4.4e-25 Score=218.54 Aligned_cols=156 Identities=13% Similarity=0.007 Sum_probs=112.5
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
.+...|+++.|++.. +|+++||++++|++++|+||||||||||+|+|+|-. . .|..... ....+. +.
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g~~~~~---~~~~~~-v~ 501 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DGFPTQE---ECRTVY-VE 501 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TTCCCTT---TSCEEE-TT
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CCCcccc---ceeEEE-Ec
Confidence 466669999998744 779999999999999999999999999999999621 0 1110000 111121 22
Q ss_pred cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEEEe
Q 025256 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ililD 233 (255)
++... ....+++.++... .... . ...+.++++.+++. .+.++..||||||||+++|++|+.+|++||||
T Consensus 502 q~~~~-~~~~ltv~e~l~~-----~~~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD 573 (986)
T 2iw3_A 502 HDIDG-THSDTSVLDFVFE-----SGVG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD 573 (986)
T ss_dssp CCCCC-CCTTSBHHHHHHT-----TCSS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccccc-cccCCcHHHHHHH-----hhcC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22111 1122454443322 1111 1 45678889999884 35678899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHh
Q 025256 234 GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 234 Ep~~~LD~~~~~~l~~ll~~ 253 (255)
|||++||+.+++.+.++|.+
T Consensus 574 EPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 574 EPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp STTTTCCHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHh
Confidence 99999999999999998864
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.91 E-value=6e-25 Score=225.76 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=123.8
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------- 148 (255)
-|+++||++.|+... ...+|+|+||+|++|+.++|+||+|||||||+++|.|++. |++|+ .++|...+
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 489999999997532 2336799999999999999999999999999999999998 99999 46663221
Q ss_pred -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (255)
Q Consensus 149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~ 214 (255)
...+. ++++..... -++.+|+. +|.+ ..+.+.+.++++...+ +.+. ....||||||
T Consensus 491 r~~i~~-v~Q~~~Lf~---~TI~eNI~-----~g~~-~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 491 RKNVAV-VSQEPALFN---CTIEENIS-----LGKE-GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp HHHEEE-ECSSCCCCS---EEHHHHHH-----TTCT-TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred hhcccc-cCCcceeeC---CchhHHHh-----hhcc-cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 13444 777776443 35555543 3333 2345555555554432 3332 2348999999
Q ss_pred chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
||+++|||+..+|+|+||||||++||+.+.+.+.+.|+.
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=1.7e-24 Score=209.32 Aligned_cols=168 Identities=17% Similarity=0.106 Sum_probs=93.4
Q ss_pred ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHH---------------------HHHHHhhcccCCCCc
Q 025256 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKA 139 (255)
Q Consensus 81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLl---------------------k~L~gll~~~~p~~G 139 (255)
+++++.|-... ...+|+||||+|++|+++||+||||||||||+ +++.|+.. |+.|
T Consensus 19 ~~~~~~~~~~~-~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~ 94 (670)
T 3ux8_A 19 SHMDKIIVKGA-RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVD 94 (670)
T ss_dssp ---CEEEEEEE-CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCS
T ss_pred CCcceEEEcCC-CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCcc
Confidence 34555552221 22378999999999999999999999999998 88888876 7755
Q ss_pred cc--------cCCCCC----CCCeeEEEecCCCCC-----------------cCccCCcccChHHHHHhc--CCCCCC--
Q 025256 140 SS--------FDSQVK----PPDVATVLPMDGFHL-----------------YLSQLDAMEDPKEAHARR--GAPWTF-- 186 (255)
Q Consensus 140 ~~--------~~~~~~----~~~~g~~i~~d~~~~-----------------~~~~l~~~e~~~~~~~~~--g~~~~~-- 186 (255)
.+ +++... ....|. +.+..... ....+++.++..+..... ......
T Consensus 95 ~i~~~~~~i~~~~~~~~~~~~~~ig~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 173 (670)
T 3ux8_A 95 AIEGLSPAISIDQKTTSRNPRSTVGT-VTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIAR 173 (670)
T ss_dssp EEESCCCEEEESSCC-----CCBHHH-HTTCC-------------------------CC---------------------
T ss_pred ceeccccceEecCchhhccchhceee-eechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHH
Confidence 42 111100 011111 11000000 001134444443321100 000000
Q ss_pred ----cHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCc--EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 187 ----NPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 187 ----~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~--ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.......+++.+++. .+.++.+|||||+|||++|+||+.+|+ +||+||||++||+..++.+.++|.+
T Consensus 174 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~ 249 (670)
T 3ux8_A 174 LILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS 249 (670)
T ss_dssp -----CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 011123457777775 357788999999999999999999988 9999999999999999999999875
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=6.9e-24 Score=200.02 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=103.9
Q ss_pred ccceeecccccccccccccccee-cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------------cCCCCC
Q 025256 81 RCMDEVYDALAQRLLPTSALASN-VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVK 147 (255)
Q Consensus 81 ~~lsk~y~~~~~~i~~l~~vsl~-i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~------------~~~~~~ 147 (255)
++++.+|+.+. ++-..+. +++|+++||+||||||||||+|+|+|+++ |++|++ +.+...
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 35678888642 2333343 45899999999999999999999999998 999974 222111
Q ss_pred --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchh
Q 025256 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv 217 (255)
....+. ....++......+... .......... ......++++.+++. .+..+..|||||+|||
T Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~v~~~l~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 75 YNYFKELYSNELKI-VHKIQYVEYASKFLKG-TVNEILTKID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147 (538)
T ss_dssp HHHHHHHHTTCCCE-EEECSCTTGGGTTCCS-BHHHHHHHHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred HHHHHHHhhcccch-hhccchhhhhhhhccC-cHHHHhhcch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 011111 1111110000000000 0011010110 112345677777765 4667789999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
++|+||+.+|++|||||||++||+..+..+.++|.+.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l 184 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998763
No 59
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=2e-25 Score=197.42 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=108.5
Q ss_pred eEEEccceeecccccccccccccccee-----------------------cCCCeEEEEECCCCCcHHHHHHHHHHhhcc
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~-----------------------i~~Geiv~LiGpNGsGKSTLlk~L~gll~~ 133 (255)
.|++++|++.|+. +++++++. +++|+++||+||||||||||+++|+|++.
T Consensus 43 ~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~- 115 (312)
T 3aez_A 43 QIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA- 115 (312)
T ss_dssp CCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred eEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence 5889999999964 33444443 88999999999999999999999999997
Q ss_pred cCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-CCCCCCCCcc
Q 025256 134 IWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG 212 (255)
Q Consensus 134 ~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G 212 (255)
|+.| ....+. +++|+++... ++.++.... ..++.+..++...+.++++.++.+. +..++.||+|
T Consensus 116 --~~~G--------~~~v~~-v~qd~~~~~~---t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G 180 (312)
T 3aez_A 116 --RWDH--------HPRVDL-VTTDGFLYPN---AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHL 180 (312)
T ss_dssp --TSTT--------CCCEEE-EEGGGGBCCH---HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred --ccCC--------CCeEEE-EecCccCCcc---cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChh
Confidence 6555 234454 8888875431 333332211 1135556667778888898888443 3678899999
Q ss_pred ccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256 213 VGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 213 ~~qrv~~a~~l~~~~~ililDEp~~~LD 240 (255)
|+||+++|++++.+|+|||+|||++++|
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCC
Confidence 9999999999999999999999999987
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.86 E-value=4.2e-22 Score=192.61 Aligned_cols=64 Identities=13% Similarity=0.006 Sum_probs=53.7
Q ss_pred HHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
..+.++.+++. .+.++..|||||+|||++|+||+.+| ++||+||||++||+..++++.++|.+.
T Consensus 523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l 592 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 592 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 34566666664 24567799999999999999998876 599999999999999999999998753
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=1.1e-22 Score=169.99 Aligned_cols=128 Identities=16% Similarity=0.061 Sum_probs=81.8
Q ss_pred eeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC----C--CCCCCeeEEEecC
Q 025256 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS----Q--VKPPDVATVLPMD 158 (255)
Q Consensus 85 k~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~----~--~~~~~~g~~i~~d 158 (255)
|.|+... +|+++ ++|++++|+||||||||||+++|+|+ + |++|++... . ......|. ++++
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~ 74 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGT 74 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC-
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCC
Confidence 4566543 67885 79999999999999999999999999 7 999985210 0 00111121 2221
Q ss_pred CCCCcCccCCcccCh-HH---HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256 159 GFHLYLSQLDAMEDP-KE---AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 159 ~~~~~~~~l~~~e~~-~~---~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE 234 (255)
. .++. .+ ...... .......+.++++. ++ ||+||+++|++|+.+|++||+||
T Consensus 75 ~----------~enl~~~~~~~~~~~~--~~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 75 L----------NEKIDPYLRPLHDALR--DMVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ---------------CTTTHHHHHHHT--TTSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred H----------HHHHHHHHHHHHHHHH--HhccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeC
Confidence 1 1111 11 000110 00112234444443 21 99999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHh
Q 025256 235 NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 235 p~~~LD~~~~~~l~~ll~~ 253 (255)
||++ .++.+.++|.+
T Consensus 131 Pts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTR 145 (208)
T ss_dssp GGGC----CHHHHHHHHTT
T ss_pred Cccc----cHHHHHHHHHH
Confidence 9999 77888888754
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.85 E-value=8.6e-25 Score=202.51 Aligned_cols=159 Identities=14% Similarity=0.028 Sum_probs=106.3
Q ss_pred cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-c-c-cCCCCCCCCe
Q 025256 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-S-FDSQVKPPDV 151 (255)
Q Consensus 75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~-~~~~~~~~~~ 151 (255)
.++++++||++.|+ +++|++++|++++|+||||||||||+|+|+|++. |++| + + ++++. ....
T Consensus 116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~~-~~~i 181 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLDP-QQPI 181 (460)
T ss_dssp CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECCT-TSCS
T ss_pred cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCCc-cCCe
Confidence 34677888888874 5889999999999999999999999999999997 8899 7 4 44432 1222
Q ss_pred eEEEecCCCC-CcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhh--hccCC
Q 025256 152 ATVLPMDGFH-LYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQH 227 (255)
Q Consensus 152 g~~i~~d~~~-~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~--l~~~~ 227 (255)
+. +.++... .....+++.++. +.... .+. ........+++.+++........||+||+||+++|++ |+.+|
T Consensus 182 ~~-vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 182 FT-VPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp SS-CSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ee-eccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc
Confidence 22 2222110 001112333333 11100 010 0111122344455554433467899999999999999 99999
Q ss_pred cE----EEEeC-CCCCCChHHHHHHHHHHHh
Q 025256 228 KV----VIVDG-NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 228 ~i----lilDE-p~~~LD~~~~~~l~~ll~~ 253 (255)
++ ||+|| ||++||+. ++.+.+++.+
T Consensus 257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~ 286 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK 286 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH
T ss_pred ccCcceEEEeCCcccccChh-HHHHHHHHHH
Confidence 99 99999 99999998 7777777654
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=8.4e-21 Score=186.17 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=56.8
Q ss_pred HHHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccC---CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 190 LLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 190 ~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~---~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
...++++.+++.. ...+..|||||+||+++|++|+.+ |++|||||||++||+..++++.++|++.
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 4467788888864 566779999999999999999986 7999999999999999999999998753
No 64
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=2.3e-22 Score=183.59 Aligned_cols=141 Identities=8% Similarity=-0.046 Sum_probs=103.7
Q ss_pred cccccceecCCCe--------------------EEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (255)
Q Consensus 96 ~l~~vsl~i~~Ge--------------------iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (255)
++++++|++++|+ ++||+||||||||||+|+|+|++. |++|++ +++.... ..+.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t-~~~~- 112 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVT-MERH- 112 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC-----CCCE-
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecc-eeEE-
Confidence 6799999999999 999999999999999999999997 999994 5443221 2244
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCcc--ccchhhhhhhhcc-------
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--VGDPVEDDILVGL------- 225 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G--~~qrv~~a~~l~~------- 225 (255)
+.++.. ..+++..+++.+. .. .....+.++.+++........+|+| |+||+.+|++++.
T Consensus 113 v~q~~~---~~~ltv~D~~g~~-----~~----~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 113 PYKHPN---IPNVVFWDLPGIG-----ST----NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp EEECSS---CTTEEEEECCCGG-----GS----SCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred eccccc---cCCeeehHhhccc-----ch----HHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 444332 1124555544321 11 1234566777766532222349999 9999999999999
Q ss_pred ---CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 226 ---QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 226 ---~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+++++||||++||+..++++++++.+
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999888765
No 65
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=1.1e-21 Score=158.72 Aligned_cols=46 Identities=4% Similarity=-0.174 Sum_probs=40.6
Q ss_pred CCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH----------------HHHHHHHHHH
Q 025256 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----------------VWKDVSSMFD 252 (255)
Q Consensus 207 ~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~----------------~~~~l~~ll~ 252 (255)
...|+|++||+++|++++.+|++|++||||++||+. .+.++.+++.
T Consensus 82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~ 143 (171)
T 4gp7_A 82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIK 143 (171)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhh
Confidence 455999999999999999999999999999999998 5577777754
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=7.1e-20 Score=180.49 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=55.4
Q ss_pred HHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
..++++.+++.. ...+..|||||+||+++|++|+.+| ++|||||||++||+..+++++++|.+.
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 894 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 894 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 356778888764 4667799999999999999999764 999999999999999999999998753
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.81 E-value=2.3e-19 Score=177.35 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=55.1
Q ss_pred HHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
..++++.+++.. ...+..|||||+||+++|++|+.+| ++|||||||++||+..++++.++|.+.
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 912 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL 912 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 356777777753 4667799999999999999999764 999999999999999999999998753
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=3.3e-19 Score=176.28 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 189 ~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
....++++.++++ ....+..|||||+||+++|++|+.+| ++|||||||++||+...+.+.++|++.
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L 854 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 3456778888886 34677899999999999999998765 799999999999999999999998753
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.79 E-value=7.7e-20 Score=166.78 Aligned_cols=46 Identities=15% Similarity=0.001 Sum_probs=43.8
Q ss_pred CCccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 209 lS~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+||||+||+++|++++.+| ++|||||||++||+..++.+.++|.+.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l 343 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL 343 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999 999999999999999999999998763
No 70
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=9.3e-20 Score=155.33 Aligned_cols=133 Identities=22% Similarity=0.321 Sum_probs=85.0
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~ 174 (255)
+|+++||++++|+++||+||||||||||+++|+|++. . .++ ......+. +.++.++. .++..++..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~--~~~~~i~~-v~~d~~~~---~l~~~~~~~ 80 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE--QRQRKVVI-LSQDRFYK---VLTAEQKAK 80 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC--GGGCSEEE-EEGGGGBC---CCCHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc--ccCCceEE-EeCCcCcc---ccCHhHhhh
Confidence 7899999999999999999999999999999999873 1 111 00123343 67765321 244443333
Q ss_pred HHHHhcCC--CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256 175 EAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 175 ~~~~~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~ 242 (255)
.....+.+ +..++...+.+.++.+.......++.||+||+||+++ ++++.+|+++|+|||....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 81 ALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 22211222 2234555667777777666777889999999999987 5778899999999999888753
No 71
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.78 E-value=4.9e-21 Score=168.30 Aligned_cols=128 Identities=12% Similarity=0.105 Sum_probs=89.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
+|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++ +| .++.
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G-------------~I~~ 156 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GG-------------SVLS 156 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TC-------------EEEC
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------Cc-------------eEEE
Confidence 478999999997 32 779999999999999999999999999999999998 23 3221
Q ss_pred ---cCCCCCcCccCCccc-ChHHHHHhcCCCCCCcHHHHHHHHHh-hcCCCCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256 157 ---MDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (255)
Q Consensus 157 ---~d~~~~~~~~l~~~e-~~~~~~~~~g~~~~~~~~~~~~~l~~-l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ili 231 (255)
++.. ++. .+..+ ++.+ ..... ....+.++. +..+.+ ...||+||||| ||+++.+|+|||
T Consensus 157 ~v~q~~~-lf~--~ti~~~ni~~-------~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl 220 (305)
T 2v9p_A 157 FANHKSH-FWL--ASLADTRAAL-------VDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV 220 (305)
T ss_dssp GGGTTSG-GGG--GGGTTCSCEE-------EEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE
T ss_pred EecCccc-ccc--ccHHHHhhcc-------Ccccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE
Confidence 1111 110 12211 2111 11111 133444554 322222 67899999999 999999999999
Q ss_pred EeCCCCCCChHHHHHHH
Q 025256 232 VDGNYLFLDGGVWKDVS 248 (255)
Q Consensus 232 lDEp~~~LD~~~~~~l~ 248 (255)
|++||+...+.+.
T Consensus 221 ----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 221 ----TSNIDVQAEDRYL 233 (305)
T ss_dssp ----EESSCSTTCGGGG
T ss_pred ----ECCCCHHHHHHHH
Confidence 9999998776654
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.74 E-value=5.5e-20 Score=149.88 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCCCCCCCccccchhhhhhh-----hccCCcEEEEeC--CCCCCChHHHHHHHHHHHh
Q 025256 203 SVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~~qrv~~a~~-----l~~~~~ililDE--p~~~LD~~~~~~l~~ll~~ 253 (255)
..++..||+||+||+++|++ ++.+|+++|+|| |++++|+..++.+.+++++
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 34456899999999999996 999999999999 9999999999999998864
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.70 E-value=2.2e-17 Score=146.22 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=45.0
Q ss_pred CCCCCCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 205 YAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 205 ~~~~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.+..||+||+||+++|++++ .+|+++|+||||++||+..++.+.+++.+.
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 45589999999999999986 688999999999999999999999988653
No 74
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.69 E-value=7.4e-17 Score=145.35 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCCCCCCccccchhhhhhhhc------cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 204 ~~~~~lS~G~~qrv~~a~~l~------~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
.++..|||||+||+++|++|+ .+|++||+||||++||+..++.+.++|.+.
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l 331 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL 331 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGG
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 456689999999999999998 799999999999999999999999998763
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.66 E-value=2.3e-17 Score=142.88 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=71.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~ 182 (255)
.++|+||||||||||+|+|+|+.. |++|+ .+++.... ...+. +.++... ...+++.+++.+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~-v~q~~~~--~~~ltv~d~~~~g~~~~-- 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGH-VIEEGGV--KMKLTVIDTPGFGDQIN-- 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEE-SCC------CCEEEEECCCC--CCSB--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEE-EeecCCC--cCCceEEechhhhhhcc--
Confidence 589999999999999999999997 99998 35443221 12233 3333221 12356666665432111
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ 249 (255)
.......+...++. -..+.....||+||+||+++||+++. ++++|||+.+||+...+.+..
T Consensus 76 -~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~ 136 (270)
T 3sop_A 76 -NENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH 136 (270)
T ss_dssp -CTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH
Confidence 11112222222221 01122345799999999999999874 999999999999987544443
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.66 E-value=4e-18 Score=149.86 Aligned_cols=125 Identities=10% Similarity=0.017 Sum_probs=75.6
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHH
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~ 176 (255)
+..++|++++|++++|+||||||||||+++|+|+++ |++|+ +.+.+.+.++. ...+.....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~--------------V~l~g~d~~r~--~a~~ql~~~ 150 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTK--------------VLMAAGDTFRA--AASDQLEIW 150 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC--------------EEEECCCCSCH--HHHHHHHHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCe--------------EEEEeecccch--hHHHHHHHH
Confidence 367899999999999999999999999999999996 66554 22233222110 000001111
Q ss_pred H--HhcCC-CCCCc-HHHHHHHHHhhc----------------CCC--CCCCCCCCccccchhhhhhhhccCCc--EEEE
Q 025256 177 H--ARRGA-PWTFN-PLLLLNCLKNLR----------------NQG--SVYAPSFDHGVGDPVEDDILVGLQHK--VVIV 232 (255)
Q Consensus 177 ~--~~~g~-~~~~~-~~~~~~~l~~l~----------------l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~--ilil 232 (255)
. ...++ ++... ......+.+++. +.. +..+.+|| +||+++|++++.+|+ +|++
T Consensus 151 ~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 151 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 1 11222 22221 111122222211 110 11122466 899999999999999 9999
Q ss_pred eCCCCCCChHHH
Q 025256 233 DGNYLFLDGGVW 244 (255)
Q Consensus 233 DEp~~~LD~~~~ 244 (255)
| ||+++|+..+
T Consensus 228 D-ptsglD~~~~ 238 (302)
T 3b9q_A 228 D-GNTGLNMLPQ 238 (302)
T ss_dssp E-GGGGGGGHHH
T ss_pred e-CCCCcCHHHH
Confidence 9 9999998754
No 77
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.66 E-value=5.9e-18 Score=140.32 Aligned_cols=129 Identities=24% Similarity=0.268 Sum_probs=88.0
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (255)
.++|+++||+||||||||||+++|+|++. +..+. +.+|.++.....++..++.. ..++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~----------------~~i~~-v~~d~~~~~~~~~~~~~~~~---~~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG----------------ERVAL-LPMDHYYKDLGHLPLEERLR---VNYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG----------------GGEEE-EEGGGCBCCCTTSCHHHHHH---SCTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC----------------CCeEE-EecCccccCcccccHHHhcC---CCCCCh
Confidence 46899999999999999999999999983 23444 77777654322233222111 112234
Q ss_pred CCCcHHHHHHHHHhhcCCCCC--CCCCCCcccc----chhhhhhhhccCCcEEEEeCCCCC-------CChHHHHHHHHH
Q 025256 184 WTFNPLLLLNCLKNLRNQGSV--YAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLF-------LDGGVWKDVSSM 250 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~l~~~~--~~~~lS~G~~----qrv~~a~~l~~~~~ililDEp~~~-------LD~~~~~~l~~l 250 (255)
...+...+.+.++.+++.... ....+|+|++ ||++++++++.++.++++|||+.+ ||......+.+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 445566677788877766432 3447788864 677888888888888888888888 888777777776
Q ss_pred HH
Q 025256 251 FD 252 (255)
Q Consensus 251 l~ 252 (255)
+.
T Consensus 143 l~ 144 (211)
T 3asz_A 143 LK 144 (211)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.65 E-value=2e-18 Score=144.85 Aligned_cols=143 Identities=12% Similarity=0.033 Sum_probs=77.3
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCC---CC------CeeEEEecCCCCCcCcc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PP------DVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~---~~------~~g~~i~~d~~~~~~~~ 166 (255)
.|+++||++++|++++|+||||||||||+++|+|++ | |++..+... .+ ..+. ++++... +...
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~g~~~~~~~~~~~~~~~i~~-~~~~~~~-~~~~ 83 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYFSVSCTTRKKREKEKEGVDY-YFIDKTI-FEDK 83 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEECCCEECSCCCSSCCBTTTB-EECCHHH-HHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEEeecccCCCCCcccccCCeE-EECCHHH-HHHh
Confidence 579999999999999999999999999999999987 6 662112110 00 1111 1111100 0000
Q ss_pred ---CCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhh-----hhhhccCCcEEEEeCCCCC
Q 025256 167 ---LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-----DILVGLQHKVVIVDGNYLF 238 (255)
Q Consensus 167 ---l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~-----a~~l~~~~~ililDEp~~~ 238 (255)
-...++..+....++ .......++++..... ...-.+||||+||+++ +++++.+|+++++|||++.
T Consensus 84 ~~~~~~l~~~~~~~~~~g----~~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~ 157 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYG----TLKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLT 157 (218)
T ss_dssp HHTTCEEEEEEETTEEEE----EEHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHH
T ss_pred hhccchhhhhhcccccCC----CcHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHh
Confidence 000000000000001 1122344455443221 1114679999999999 8899999999999999999
Q ss_pred CChHHHHHHHHHHH
Q 025256 239 LDGGVWKDVSSMFD 252 (255)
Q Consensus 239 LD~~~~~~l~~ll~ 252 (255)
+|....+.+.+.+.
T Consensus 158 ~d~~~~~~i~~~l~ 171 (218)
T 1z6g_A 158 RNTENQEQIQKRME 171 (218)
T ss_dssp TCCCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 99887777776654
No 79
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.65 E-value=9.2e-18 Score=147.86 Aligned_cols=142 Identities=20% Similarity=0.355 Sum_probs=96.6
Q ss_pred eEEEccceeeccccccccccccccceec-------------------CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i-------------------~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~ 137 (255)
+|++++|++.|+. +++++++.+ .+|+++||+||||||||||+++|+|++.. +|+
T Consensus 37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 5889999999953 669999988 89999999999999999999999999830 123
Q ss_pred CccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC-CCCCCCCccccch
Q 025256 138 KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDP 216 (255)
Q Consensus 138 ~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qr 216 (255)
+|+ ..++.+|+++... ......... ..++.+...+.......+..+..+.. ...|.|+....+|
T Consensus 110 ~G~-----------i~vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~ 174 (308)
T 1sq5_A 110 HRR-----------VELITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDV 174 (308)
T ss_dssp CCC-----------EEEEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEE
T ss_pred CCe-----------EEEEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCc
Confidence 331 2234558775321 000000000 12233344455555566666655554 6678898888888
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCC
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD 240 (255)
+..+...+.+++++|+|+|+++.+
T Consensus 175 ~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 175 IPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp CTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ccccceecCCCCEEEECchhhCCC
Confidence 876666667889999999999987
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.64 E-value=3.6e-17 Score=145.48 Aligned_cols=92 Identities=11% Similarity=0.140 Sum_probs=68.3
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+++++++.+++|++++|+||||||||||+++|+|++. |++ |. +.++|..... +....
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~-------------g~-i~i~~~~e~~--~~~~~---- 216 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEE-------------RI-ISIEDTEEIV--FKHHK---- 216 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTS-------------CE-EEEESSCCCC--CSSCS----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-------------cE-EEECCeeccc--cccch----
Confidence 5699999999999999999999999999999999995 444 44 4444432110 00000
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCC
Q 025256 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~ 237 (255)
...++.. .+||+||++++++|..+|++||+|||++
T Consensus 217 --~~i~~~~-------------------------ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 217 --NYTQLFF-------------------------GGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp --SEEEEEC-------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred --hEEEEEe-------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 0001000 0899999999999999999999999998
No 81
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.64 E-value=2.4e-18 Score=152.29 Aligned_cols=139 Identities=25% Similarity=0.401 Sum_probs=104.3
Q ss_pred ceeeccccccccccccccceecCCCe------EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 83 MDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 83 lsk~y~~~~~~i~~l~~vsl~i~~Ge------iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
+++.|++.. ++.+++..+.++. ++||+||||||||||+++|++++.. +|+. ...+ ++.
T Consensus 66 l~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~----------~~v~-~i~ 129 (321)
T 3tqc_A 66 LSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDH----------PNVE-VIT 129 (321)
T ss_dssp HHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTC----------CCEE-EEE
T ss_pred HHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCC----------CeEE-EEe
Confidence 344455544 5677887777665 9999999999999999999999841 1122 2233 488
Q ss_pred cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-CCCCCCCCccccchhhhhhhhccCCcEEEEeCC
Q 025256 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp 235 (255)
+|+++.....+.. ......+|+|+.++...+.+.++.+..+. .+..|.||++.++|+......+..++|+|+||+
T Consensus 130 ~D~f~~~~~~l~~----~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi 205 (321)
T 3tqc_A 130 TDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGL 205 (321)
T ss_dssp GGGGBCCHHHHHH----TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred ecccccchhhhhh----HHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcc
Confidence 9998754321110 01123567888899999999999998887 788999999999998766666789999999999
Q ss_pred CCCCCh
Q 025256 236 YLFLDG 241 (255)
Q Consensus 236 ~~~LD~ 241 (255)
+.+.|+
T Consensus 206 ~lL~~~ 211 (321)
T 3tqc_A 206 NILQTG 211 (321)
T ss_dssp TTTCCC
T ss_pred cccccc
Confidence 999986
No 82
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.63 E-value=1.2e-16 Score=139.57 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=87.7
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHH------H
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H 177 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~------~ 177 (255)
-.++.+++|+||+|||||||++.|++++. +. |. ....+.++.+|+++... +..++..+. .
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence 45689999999999999999999999995 10 10 01234434999987542 222222211 1
Q ss_pred HhcCCCCCCcHHHHHHHHHhhcCC------CCCCCC----CCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256 178 ARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAP----SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~----~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~ 242 (255)
...|.+..++...+.+.++.+..+ ....+| .+||||+||+++|++...+|+|||+||+++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 224568888988899999998776 223334 56899999998873332389999999999999974
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.61 E-value=6.3e-17 Score=145.23 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=75.6
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHH-
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA- 176 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~- 176 (255)
..++|++++|++++|+||||||||||+++|+|+++ |++|+ |.+.+.+.++. ...+.....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~--------------V~l~g~D~~r~--~a~eql~~~~ 208 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTK--------------VLMAAGDTFRA--AASDQLEIWA 208 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC--------------EEEECCCCSCH--HHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCE--------------EEEeccccccc--chhHHHHHHH
Confidence 46889999999999999999999999999999996 55554 22333222110 000001111
Q ss_pred -HHhcCC-CCCCc-HHHHHHHHHhhc----------------CC--CCCCCCCCCccccchhhhhhhhccCCc--EEEEe
Q 025256 177 -HARRGA-PWTFN-PLLLLNCLKNLR----------------NQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVD 233 (255)
Q Consensus 177 -~~~~g~-~~~~~-~~~~~~~l~~l~----------------l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~--ililD 233 (255)
+...++ ++... ..+...+.+++. +. .+..+.+|| +||++++++++.+|+ +|++|
T Consensus 209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred HhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 111222 32222 112222222221 11 011122466 899999999999999 99999
Q ss_pred CCCCCCChHHH
Q 025256 234 GNYLFLDGGVW 244 (255)
Q Consensus 234 Ep~~~LD~~~~ 244 (255)
||+++|+..+
T Consensus 286 -pttglD~~~~ 295 (359)
T 2og2_A 286 -GNTGLNMLPQ 295 (359)
T ss_dssp -GGGGGGGHHH
T ss_pred -CCCCCCHHHH
Confidence 9999998755
No 84
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=1.1e-16 Score=131.88 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=88.4
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh-----cccCCCCccccC-CCCCCC
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFD-SQVKPP 149 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll-----~~~~p~~G~~~~-~~~~~~ 149 (255)
.+++++|+++.|+. . ++++ |.+.+|..++|+|+||||||||++.|+|.. . |+.|.... +.....
T Consensus 2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~ 71 (210)
T 1pui_A 2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVA 71 (210)
T ss_dssp ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEec
Confidence 36899999999973 2 5577 899999999999999999999999999986 4 66665211 000000
Q ss_pred CeeEEEecCCCCCcCccCCcc--c----ChHHHHHh-cC-----------CCCCCcHHHHHHHHHhhcCCC---CCCCCC
Q 025256 150 DVATVLPMDGFHLYLSQLDAM--E----DPKEAHAR-RG-----------APWTFNPLLLLNCLKNLRNQG---SVYAPS 208 (255)
Q Consensus 150 ~~g~~i~~d~~~~~~~~l~~~--e----~~~~~~~~-~g-----------~~~~~~~~~~~~~l~~l~l~~---~~~~~~ 208 (255)
..-.++...|+.... .+.. + ........ .. .+.......+..+++..++.. ..+...
T Consensus 72 ~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 72 DGKRLVDLPGYGYAE--VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADK 149 (210)
T ss_dssp TTEEEEECCCCC--------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECcCCcccc--cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccC
Confidence 001111222221100 0000 0 00011100 00 011111122344444444331 234557
Q ss_pred CCccccch-hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 209 FDHGVGDP-VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 209 lS~G~~qr-v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|+|++|+ +..+++++.++.+++.|||++++|....+++.+.+.+
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 89999998 7888888888888899999999999999999988765
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.57 E-value=5.8e-16 Score=155.22 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=84.0
Q ss_pred ceEEEcc-----ceeec-cccccccccccccceecCC-------CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc
Q 025256 76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (255)
Q Consensus 76 ~~l~i~~-----lsk~y-~~~~~~i~~l~~vsl~i~~-------Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~ 142 (255)
++|++++ |++.| ++.. +++|++|++++ |++++|+||||||||||||+| |++. +
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---V------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---H------
T ss_pred ceEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---H------
Confidence 4689999 99999 4322 67999999987 899999999999999999999 9874 1
Q ss_pred CCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhh
Q 025256 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222 (255)
Q Consensus 143 ~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~ 222 (255)
....|.+++.+.. .+++.+++.. +.|..+. .......|++++.+ ++++++
T Consensus 815 -----~aqiG~~Vpq~~~-----~l~v~d~I~~---rig~~d~----------------~~~~~stf~~em~~-~a~al~ 864 (1022)
T 2o8b_B 815 -----MAQMGCYVPAEVC-----RLTPIDRVFT---RLGASDR----------------IMSGESTFFVELSE-TASILM 864 (1022)
T ss_dssp -----HHTTTCCEESSEE-----EECCCSBEEE---ECC-------------------------CHHHHHHHH-HHHHHH
T ss_pred -----HhheeEEeccCcC-----CCCHHHHHHH---HcCCHHH----------------HhhchhhhHHHHHH-HHHHHH
Confidence 1123322333321 1233332210 1221110 00123456777765 899999
Q ss_pred hccCCcEEEEeCCCCCCChHHH-HHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVW-KDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~-~~l~~ll~~ 253 (255)
++.+|+++|+|||+.|+|+... ..++++++.
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~ 896 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVKE 896 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999998764 445566543
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.57 E-value=5e-16 Score=138.96 Aligned_cols=146 Identities=12% Similarity=0.095 Sum_probs=88.6
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++++++++++.|+.. +.+++++ |.|.+|++++|+||||||||||+++|+|+.. | +.|. +
T Consensus 44 ~~i~~~~l~~~~~tg---~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~-------------~~g~-i 102 (347)
T 2obl_A 44 DPLLRQVIDQPFILG---VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---A-------------DIIV-L 102 (347)
T ss_dssp CSTTCCCCCSEECCS---CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---C-------------SEEE-E
T ss_pred CCeeecccceecCCC---CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---C-------------CEEE-E
Confidence 568899999999732 1277999 9999999999999999999999999999984 4 4443 3
Q ss_pred ecCCCCCcC-cc-CCcccChHHHHHhcCC-CCC-C-cHHHHH------HHHHhhcC-CCC-----CCCCCCCccccchhh
Q 025256 156 PMDGFHLYL-SQ-LDAMEDPKEAHARRGA-PWT-F-NPLLLL------NCLKNLRN-QGS-----VYAPSFDHGVGDPVE 218 (255)
Q Consensus 156 ~~d~~~~~~-~~-l~~~e~~~~~~~~~g~-~~~-~-~~~~~~------~~l~~l~l-~~~-----~~~~~lS~G~~qrv~ 218 (255)
...|..... .. ...... ........+ .+. . ....+. .+.+.+.. +.+ ..+..||+|| |+++
T Consensus 103 ~~~G~~~~ev~~~i~~~~~-~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 103 ALIGERGREVNEFLALLPQ-STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp EEESCCHHHHHHHHTTSCH-HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHH
T ss_pred EEecccHHHHHHHHHhhhh-hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHH
Confidence 333321000 00 000000 000000011 110 0 111111 11111111 111 2355789999 8998
Q ss_pred hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+| +.+|++ +.|+|+..+.++.+++.+
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller 206 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLER 206 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTT
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHH
Confidence 88 456766 999999999999999865
No 87
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.56 E-value=2.2e-16 Score=131.07 Aligned_cols=123 Identities=32% Similarity=0.529 Sum_probs=79.3
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (255)
.++|++++|+||||||||||+++|+|++. |+ | +..|. +.+|++++.... .++... ....+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g---------~~~g~-v~~d~~~~~~~~---~~~~~~-~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G---------LPAEV-VPMDGFHLDNRL---LEPRGL-LPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T---------CCEEE-EESGGGBCCHHH---HGGGTC-GGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C---------CceEE-EecCCCcCCHHH---HHHhcc-cccCCCC
Confidence 57899999999999999999999999995 21 1 24565 889988653211 111100 0123455
Q ss_pred CCCcHHHHHHHHHhhcCCCCCCCC------CCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHH
Q 025256 184 WTFNPLLLLNCLKNLRNQGSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (255)
Q Consensus 184 ~~~~~~~~~~~l~~l~l~~~~~~~------~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~l 250 (255)
..++...+.+.+..+..+.....| ..|+|++|+++. .++++|+|+++..+|++.|..+.+.
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~------~~~~~i~eg~~~l~de~~~~~l~~~ 147 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP------ECRVAIIEGNYLLFDAPGWRDLTAI 147 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT------TCCEEEEEESSTTBCSTTGGGGGGT
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC------CCcEEEECCceeccCCchhHHHHHh
Confidence 566766666777766555433333 346677777653 2478888888888877655444433
No 88
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.55 E-value=2.4e-16 Score=156.08 Aligned_cols=117 Identities=18% Similarity=0.101 Sum_probs=75.6
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+++|++|++++|++++|+||||||||||||+++++.. .+..|.. .+..... +..-.. ..
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--~aq~g~~-----vpa~~~~-i~~~d~--------i~----- 720 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--MAQIGSY-----VPAEEAT-IGIVDG--------IF----- 720 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--HHHHTCC-----BSSSEEE-EECCSE--------EE-----
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--HhhcCcc-----ccchhhh-hhHHHH--------HH-----
Confidence 6699999999999999999999999999999987752 0111100 0111111 111000 00
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH-HHHH
Q 025256 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD 252 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~-~ll~ 252 (255)
...+.. +. .......||+||++++.++++ +.+|+++|+|||++|+|+.....+. .+++
T Consensus 721 --~~ig~~------------d~----l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~ 779 (918)
T 3thx_B 721 --TRMGAA------------DN----IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLE 779 (918)
T ss_dssp --EEC--------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred --HhCChH------------HH----HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 011110 00 112346789999999998887 6899999999999999998887776 5554
No 89
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.55 E-value=1.8e-16 Score=145.91 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=92.2
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (255)
++++++++++.|+.. +.+|+++ |++.+|++++|+||||||||||+++|+|+.. ++.|. +
T Consensus 130 ~~l~~~~v~~~~~tg---~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~----------------~~~G~-i 188 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG---VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR----------------ADVIV-V 188 (438)
T ss_dssp CTTTSCCCCSBCCCS---CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC----------------CSEEE-E
T ss_pred CceEEeccceecCCC---ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC----------------CCeEE-E
Confidence 468899999999732 1277999 9999999999999999999999999999984 44454 4
Q ss_pred ecCCCC---CcCccCCc-ccChHHHHHhcCC-CCC-CcHHHHHHHHHh-------hcC-CCC-----CCCCCCCccccch
Q 025256 156 PMDGFH---LYLSQLDA-MEDPKEAHARRGA-PWT-FNPLLLLNCLKN-------LRN-QGS-----VYAPSFDHGVGDP 216 (255)
Q Consensus 156 ~~d~~~---~~~~~l~~-~e~~~~~~~~~g~-~~~-~~~~~~~~~l~~-------l~l-~~~-----~~~~~lS~G~~qr 216 (255)
.++|.. +.. +.. ........+..++ ++. .......++.++ +.. +.+ ..+..||+|| ||
T Consensus 189 ~~~G~r~~ev~~--~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 189 GLIGERGREVKD--FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp EEESCCHHHHHH--HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HH
T ss_pred EEeceecHHHHH--HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HH
Confidence 444431 100 000 0000111111222 221 222222222221 111 110 1134689999 99
Q ss_pred hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+++| +.+|++ +++||+..+..+.+++.+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence 9988 667877 9999999999999998764
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.54 E-value=1.7e-15 Score=142.47 Aligned_cols=139 Identities=12% Similarity=0.004 Sum_probs=91.0
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (255)
.+++++++..|+... . + ++..+.+|++++|+||||||||||+++++|+.. | .|+ .. +.
T Consensus 257 ~~~~~~l~~g~~~ld-~--v---L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~-~G~----------~v--i~ 314 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLD-E--M---CGGGFFKDSIILATGATGTGKTLLVSRFVENAC---A-NKE----------RA--IL 314 (525)
T ss_dssp CCCCCEECCSCHHHH-H--H---TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---T-TTC----------CE--EE
T ss_pred ccccceeecChHHHH-H--H---hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---h-CCC----------CE--EE
Confidence 355666766664321 1 1 244899999999999999999999999999985 3 231 11 12
Q ss_pred cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC--CCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE 234 (255)
+.... +. .........+++ +.. ++. ..++ -.+.++..||+||+||+.+++++..+|++||+|
T Consensus 315 ~~~ee------~~-~~l~~~~~~~g~----~~~---~~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 315 FAYEE------SR-AQLLRNAYSWGM----DFE---EME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp EESSS------CH-HHHHHHHHTTSC----CHH---HHH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred EEEeC------CH-HHHHHHHHHcCC----CHH---HHH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 21111 00 111111112232 211 111 2222 134556689999999999999999999999999
Q ss_pred CCCCCChH-----HHHHHHHHHHh
Q 025256 235 NYLFLDGG-----VWKDVSSMFDE 253 (255)
Q Consensus 235 p~~~LD~~-----~~~~l~~ll~~ 253 (255)
|+++||.. .++.+.+++..
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~ 402 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGY 402 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred ChHHHHhhCChHHHHHHHHHHHHH
Confidence 99999999 88888888764
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.54 E-value=2.9e-15 Score=128.98 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=72.4
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-CccccCCCCCCCCeeEEE
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVL 155 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-~G~~~~~~~~~~~~g~~i 155 (255)
+++++++++. . +|++++ +++|++++|+||||||||||+++|+|++. |+ +|+ |
T Consensus 5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~--------------I 57 (261)
T 2eyu_A 5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYH--------------I 57 (261)
T ss_dssp -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCE--------------E
T ss_pred CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCE--------------E
Confidence 3556777643 2 679998 89999999999999999999999999995 44 454 2
Q ss_pred ecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256 156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE 234 (255)
..++..+.. .. .. ...+ .+ ..+++.. . .-|++++++|..+|++|++||
T Consensus 58 ~~~g~~i~~--~~--~~------~~~~v~q-----------~~~gl~~----~------~l~~~la~aL~~~p~illlDE 106 (261)
T 2eyu_A 58 ITIEDPIEY--VF--KH------KKSIVNQ-----------REVGEDT----K------SFADALRAALREDPDVIFVGE 106 (261)
T ss_dssp EEEESSCCS--CC--CC------SSSEEEE-----------EEBTTTB----S------CHHHHHHHHHHHCCSEEEESC
T ss_pred EEcCCccee--ec--CC------cceeeeH-----------HHhCCCH----H------HHHHHHHHHHhhCCCEEEeCC
Confidence 222221100 00 00 0000 00 0111110 1 127999999999999999999
Q ss_pred CCCCCChHHHHHHHHH
Q 025256 235 NYLFLDGGVWKDVSSM 250 (255)
Q Consensus 235 p~~~LD~~~~~~l~~l 250 (255)
|+ |+.....+.+.
T Consensus 107 p~---D~~~~~~~l~~ 119 (261)
T 2eyu_A 107 MR---DLETVETALRA 119 (261)
T ss_dssp CC---SHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHH
Confidence 99 98876655443
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.54 E-value=6.3e-15 Score=128.48 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=35.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+|+++++.+++|++++|+||||||||||++.|+|.+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999995
No 93
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.53 E-value=5.7e-16 Score=136.04 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=61.4
Q ss_pred ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHh-hcccCCCCccccCCCCCC-----CCeeEE
Q 025256 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKP-----PDVATV 154 (255)
Q Consensus 81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl-l~~~~p~~G~~~~~~~~~-----~~~g~~ 154 (255)
+||++.|++.. ++++++|+| +|+||||+|||||+++|+|. +. |++|..+.+.... ...+..
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcccCCcceEeeEEEE
Confidence 47899998755 779999988 99999999999999999987 54 7777212221111 112222
Q ss_pred EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (255)
Q Consensus 155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE 234 (255)
+..++... .+++.+.+.+.... ...+.+ ..+.+.+....+.++..+|+|++||+.++++++ ++++||
T Consensus 69 ~q~~~~~~---~ltv~Dt~g~~~~~-~~~e~~-----~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 69 IEERGVKL---RLTVVDTPGYGDAI-NCRDCF-----KTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp EC---CCE---EEEEEEEC------------C-----TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred ecCCCccc---Ccchhhhhhhhhhc-CcHHHH-----HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 22222211 24454444331110 000011 111111111113445678999999999998875 999999
Q ss_pred CCCC-CChHHH
Q 025256 235 NYLF-LDGGVW 244 (255)
Q Consensus 235 p~~~-LD~~~~ 244 (255)
|+.. ||+...
T Consensus 136 Pt~~~Ld~~~~ 146 (301)
T 2qnr_A 136 PFGHGLKPLDV 146 (301)
T ss_dssp SSSSSCCHHHH
T ss_pred CcccCCCHHHH
Confidence 9985 999765
No 94
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.51 E-value=1.1e-16 Score=131.59 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=38.2
Q ss_pred CCCccccchh-hhhh---hhccCCcEEEEeC--CCCCCChHHHHHHHHHHHh
Q 025256 208 SFDHGVGDPV-EDDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 208 ~lS~G~~qrv-~~a~---~l~~~~~ililDE--p~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+||+.++ ++++ |+..+|+++|+|| |+..+|+..++.+.++++.
T Consensus 83 ~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 83 DLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp CHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 5788888887 3444 5788999999999 8988999999999998864
No 95
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.51 E-value=3.3e-16 Score=149.71 Aligned_cols=153 Identities=9% Similarity=0.038 Sum_probs=71.9
Q ss_pred ceEEEccceeecccccccccccccc----------ceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCccccCC
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDS 144 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~v----------sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~~~~~ 144 (255)
+.+++++|++.|+...+.++ +.+ +++++. ++|+||||||||||+++|+|++. | ++|.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll--~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~v--- 77 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCI--DLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIV--- 77 (608)
T ss_dssp -----------CHHHHHHHH--HHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------C---
T ss_pred chhhhhhhhHHHHHHHHHHH--HHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeE---
Confidence 35788999999986433222 322 355553 99999999999999999999985 6 56762
Q ss_pred CCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh
Q 025256 145 QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223 (255)
Q Consensus 145 ~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l 223 (255)
..+|..+......... ..+...++ ++........++.+++..........-.+...+++.++.+.
T Consensus 78 -----------t~~g~~i~~~~~~~~~---~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~ 143 (608)
T 3szr_A 78 -----------TRCPLVLKLKKLVNED---KWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISS 143 (608)
T ss_dssp -----------CCSCEEEEEEECSSSS---CCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEE
T ss_pred -----------EEcCEEEEEecCCccc---cceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcC
Confidence 2222111000000000 00011222 22221112223333322210000000112234566666777
Q ss_pred ccCCcEEEEeCC------CCCCChHHHHHHHHHHHh
Q 025256 224 GLQHKVVIVDGN------YLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 224 ~~~~~ililDEp------~~~LD~~~~~~l~~ll~~ 253 (255)
...|+++|+||| +++||+..++.+.+++..
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 788999999999 999999999999998875
No 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.50 E-value=6.9e-14 Score=124.58 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=44.4
Q ss_pred CCCCCCCccccc------hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 204 ~~~~~lS~G~~q------rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
..+..||+||+| |+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~ 299 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 345689999999 56778888889999999999999999999999998865
No 97
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.50 E-value=2.9e-15 Score=133.50 Aligned_cols=157 Identities=34% Similarity=0.584 Sum_probs=119.2
Q ss_pred cccccceecCCCeE--EEEECCCCCcHHHHHHHHHHhhcccC--------------------------------------
Q 025256 96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW-------------------------------------- 135 (255)
Q Consensus 96 ~l~~vsl~i~~Gei--v~LiGpNGsGKSTLlk~L~gll~~~~-------------------------------------- 135 (255)
+++.+++.+++|++ ++|+|++||||||++++|++.+...+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 45888999999988 99999999999999999999874221
Q ss_pred -CCCccccCC------------------C-----------------------C-CC---C---CeeEEEecCCCCCcCcc
Q 025256 136 -PQKASSFDS------------------Q-----------------------V-KP---P---DVATVLPMDGFHLYLSQ 166 (255)
Q Consensus 136 -p~~G~~~~~------------------~-----------------------~-~~---~---~~g~~i~~d~~~~~~~~ 166 (255)
...|+.|.. . . .. + ....++++|||+.++..
T Consensus 91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~ 170 (359)
T 2ga8_A 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170 (359)
T ss_dssp HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence 001110000 0 0 00 1 13456899999988777
Q ss_pred CCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-----------------------------CCCCCCCCCccccchh
Q 025256 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV 217 (255)
Q Consensus 167 l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----------------------------~~~~~~~lS~G~~qrv 217 (255)
++.+.+......++|.|+.++...+.+.++.|.-+ ..+.+|.||+...+++
T Consensus 171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~ 250 (359)
T 2ga8_A 171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT 250 (359)
T ss_dssp HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence 77666666667789999999999988888877554 3567889999999999
Q ss_pred hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~ 252 (255)
.....+...++++|+|+..++++...|..+.+++|
T Consensus 251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D 285 (359)
T 2ga8_A 251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLA 285 (359)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred CCceEecCCCCEEEEEeehhhccccchhhhhhccc
Confidence 87777776789999999989999778889999998
No 98
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.49 E-value=3.9e-14 Score=140.59 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=70.9
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+++|++|++++|++++|+||||||||||||++++..- .+..|.. .|..+..+..-+. .
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~~------vpa~~~~~~~~d~--------i------ 708 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGCF------VPCESAEVSIVDC--------I------ 708 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTCC------BSEEEEEEECCSE--------E------
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCCc------cccccccchHHHH--------H------
Confidence 6699999999999999999999999999999955431 0111100 0111111111000 0
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh--ccCCcEEEEeCCCCCCChHHHHHH-HHHHH
Q 025256 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV-SSMFD 252 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l--~~~~~ililDEp~~~LD~~~~~~l-~~ll~ 252 (255)
..++|. . +.....+|.+++++..+++++ +.+|+++|+|||+.|+|+.....+ +.+++
T Consensus 709 -~~~ig~------------------~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~ 768 (934)
T 3thx_A 709 -LARVGA------------------G-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISE 768 (934)
T ss_dssp -EEECC----------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHH
T ss_pred -HHhcCc------------------h-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 001111 1 111234677777777777777 889999999999999999887776 44443
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.47 E-value=4.5e-14 Score=137.77 Aligned_cols=112 Identities=24% Similarity=0.257 Sum_probs=74.1
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+++|++|+ |++++|+||||||||||+|+|+|+.. .++.|..+ +..... +.+-... + +
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~v-----pa~~~~-i~~v~~i-~----~------- 624 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFV-----PAEEAH-LPLFDGI-Y----T------- 624 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCB-----SSSEEE-ECCCSEE-E----E-------
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCcee-----ehhccc-eeeHHHh-h----c-------
Confidence 67999998 99999999999999999999999862 03444321 111111 1110000 0 0
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh--ccCCcEEEEeCC---CCCCChHHH-HHHHH
Q 025256 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSS 249 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l--~~~~~ililDEp---~~~LD~~~~-~~l~~ 249 (255)
..+.. +++. ..+|.++++++.+++++ +.+|+++|+||| |+++|.... ..+.+
T Consensus 625 ---~~~~~------------d~l~-------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~ 682 (765)
T 1ewq_A 625 ---RIGAS------------DDLA-------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE 682 (765)
T ss_dssp ---ECCC-------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred ---cCCHH------------HHHH-------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence 01110 0111 13688999999999988 999999999999 999998765 46776
Q ss_pred HHH
Q 025256 250 MFD 252 (255)
Q Consensus 250 ll~ 252 (255)
.+.
T Consensus 683 ~L~ 685 (765)
T 1ewq_A 683 ALH 685 (765)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 100
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.47 E-value=6.9e-17 Score=134.02 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=25.8
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++.| .+|++|++++|+||||||||||+|+|+|++
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4577 689999999999999999999999999998
No 101
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=3.9e-14 Score=129.52 Aligned_cols=140 Identities=11% Similarity=0.000 Sum_probs=74.8
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc---ccCCCCCCC-C-
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVKPP-D- 150 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~---~~~~~~~~~-~- 150 (255)
.+|+++||++.|++.. ++++++|+| +|+|+||||||||+++|+|... ++.|. ......... .
T Consensus 10 ~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCEEEE
T ss_pred CcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCccceeeee
Confidence 4689999999998754 779999997 9999999999999999999874 44432 111100000 0
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCc--
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK-- 228 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~-- 228 (255)
.+.++..++.. ..+++.+++.+..... .. ..+..+.+.+. ..|+.++++|++++++++.+|+
T Consensus 77 i~~v~q~~~~~---~~Ltv~Dt~g~~~~~~---~~---~~~~~i~~~i~-------~~~~~~l~qr~~IaRal~~d~~~~ 140 (418)
T 2qag_C 77 SKVLIKEGGVQ---LLLTIVDTPGFGDAVD---NS---NCWQPVIDYID-------SKFEDYLNAESRVNRRQMPDNRVQ 140 (418)
T ss_dssp EECC------C---EEEEEEECC-----------------CHHHHHHHH-------HHHHHHTTTSCC-CCCCCCCC-CC
T ss_pred EEEEEecCCcc---cceeeeechhhhhhcc---ch---hhHHHHHHHHH-------HHHHHHHHHHHHHHHHhccCCCee
Confidence 11101111111 1245555543322110 00 01111222221 1345577889999999999999
Q ss_pred -EEEEeCCC-CCCChHHH
Q 025256 229 -VVIVDGNY-LFLDGGVW 244 (255)
Q Consensus 229 -ililDEp~-~~LD~~~~ 244 (255)
+|++|||+ .++|+...
T Consensus 141 vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp EEEEECCC-CCSCCHHHH
T ss_pred EEEEEecCcccCCCHHHH
Confidence 99999999 69998664
No 102
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.46 E-value=3.7e-14 Score=127.31 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=44.0
Q ss_pred CCCccccchhhhhhhhc---------cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 208 SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 208 ~lS~G~~qrv~~a~~l~---------~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.+|+||+||+++|++|+ .+|+|||+||||++||+..++.+.+++..
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~ 319 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS 319 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence 59999999999999999 89999999999999999999999999865
No 103
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.45 E-value=2.1e-15 Score=127.45 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=35.5
Q ss_pred ceEEEccceeeccccccccccccccc-eecCCCeEEEEECCCCCcHHHHHHHHH--Hhh
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALA-SNVNVKHIVGLAGPPGAGKSTLAAEVV--RRI 131 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vs-l~i~~Geiv~LiGpNGsGKSTLlk~L~--gll 131 (255)
.+++++.++..+... +.+- =.|++|++++|+||||||||||+++|+ |++
T Consensus 5 ~~~~~~~i~tg~~~l-------D~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~ 56 (251)
T 2ehv_A 5 AYQPVRRVKSGIPGF-------DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp ---CCCEECCSCTTT-------GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cccccceeecCCHhH-------HHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356666776666542 3331 168999999999999999999999999 663
No 104
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.45 E-value=1.6e-14 Score=115.19 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=50.9
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~ 144 (255)
++..++++.|++.. +++++||++++|++++|+||||||||||+|+|+|++ |++|+ .+++
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g 67 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPT 67 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCT
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECC
Confidence 44567888997643 779999999999999999999999999999999998 88898 3444
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.42 E-value=3e-13 Score=116.97 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=79.3
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~ 182 (255)
.+++|++++|+||||||||||++.+++.+. .|..+.+.... ..+.++.+.... +. +.........+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~~-~~~~v~~~~~e~------~~-~~~~~r~~~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGEL-PTGPVIYLPAED------PP-TAIHHRLHALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCCC-CCCCEEEEESSS------CH-HHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCccC-CCccEEEEECCC------CH-HHHHHHHHHHHh
Confidence 377999999999999999999999999774 34422221111 111112222211 10 111111112222
Q ss_pred CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCC--CCChHHH---HHHHHHH
Q 025256 183 PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGGVW---KDVSSMF 251 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~--~LD~~~~---~~l~~ll 251 (255)
..+......+++.+.+. ....+..+|+|+.+++ ++++.+|++||+|||++ ++|+... .++.+.|
T Consensus 93 --~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 93 --HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp --TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred --hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 23334456677777664 3456778999997765 46777999999999999 8887544 4444444
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.39 E-value=1.9e-13 Score=113.88 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=66.6
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~ 182 (255)
-+++|++++|+||||||||||+++|+|++. +..|.. ....+. +.+++.... . .+.........++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~---~~~~~g------~~~~~~-i~~~~~~~~----~-~~~i~~~~~~~~~ 85 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ---LPPEEG------GLNGSV-IWIDTENTF----R-PERIREIAQNRGL 85 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT---SCGGGT------CCSCEE-EEEESSSCC----C-HHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh---cccccC------CCCCEE-EEEECCCCC----C-HHHHHHHHHHcCC
Confidence 588999999999999999999999999764 322210 012223 555554211 1 1122233333443
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccc-hhhhhhhhc-------cCCcEEEEeCCCCCCChH
Q 025256 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGD-PVEDDILVG-------LQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~q-rv~~a~~l~-------~~~~ililDEp~~~LD~~ 242 (255)
. . .++++++.+.. .++.++++ .+..+..++ .+|+++++|||++++|+.
T Consensus 86 ~----~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 86 D----P---DEVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp C----H---HHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred C----H---HHHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 2 1 16677765432 23333322 233333333 489999999999999873
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.38 E-value=3.5e-14 Score=133.51 Aligned_cols=144 Identities=10% Similarity=0.053 Sum_probs=83.5
Q ss_pred eEEEccceeeccccccccccccccce-ecCCCeEEEEECCCCCcHHHHHHH--HHHhhcccCCCCccccCCCCCCCCeeE
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVAT 153 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl-~i~~Geiv~LiGpNGsGKSTLlk~--L~gll~~~~p~~G~~~~~~~~~~~~g~ 153 (255)
+++.+++.+.+++.. +|++++| .+++|++++|+||||||||||+++ ++|+++ |++ |.
T Consensus 12 ~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~-------------g~ 71 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDE-------------PG 71 (525)
T ss_dssp --CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCC-------------CE
T ss_pred CccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCC-------------CE
Confidence 466667766665543 7899999 999999999999999999999999 789984 333 43
Q ss_pred EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---CCCC-C---CCCCCccccchhhhhhhh-cc
Q 025256 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSV-Y---APSFDHGVGDPVEDDILV-GL 225 (255)
Q Consensus 154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---~~~~-~---~~~lS~G~~qrv~~a~~l-~~ 225 (255)
+.+++.... .........+++. ++ .... ..++.. .... . ...++.+. ....+..+| ..
T Consensus 72 -i~v~g~~~~-------~~~~~~~~~~g~~--~q--~~~~-~~~l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g 137 (525)
T 1tf7_A 72 -VFVTFEETP-------QDIIKNARSFGWD--LA--KLVD-EGKLFILDASPDPEGQEVVGGFDLSA-LIERINYAIQKY 137 (525)
T ss_dssp -EEEESSSCH-------HHHHHHHGGGTCC--HH--HHHH-TTSEEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHH
T ss_pred -EEEEEeCCH-------HHHHHHHHHcCCC--hH--Hhhc-cCcEEEEecCcccchhhhhcccCHHH-HHHHHHHHHHHc
Confidence 455554210 1111222334431 11 1100 001111 0000 0 01111111 111233444 36
Q ss_pred CCcEEEEeCCCCC-----CChHHHHHHHHHHHhh
Q 025256 226 QHKVVIVDGNYLF-----LDGGVWKDVSSMFDEK 254 (255)
Q Consensus 226 ~~~ililDEp~~~-----LD~~~~~~l~~ll~~~ 254 (255)
+|+++++|||++. +|+..++++.+++...
T Consensus 138 ~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 138 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8999999999985 5889999999988653
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.38 E-value=6.5e-14 Score=116.63 Aligned_cols=134 Identities=9% Similarity=0.043 Sum_probs=76.2
Q ss_pred cccccce-ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~vsl-~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~ 174 (255)
.|+++.. .+++|++++|+||||||||||++.|++... +..| .++.++.. .+. +...
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~-------------~v~~~~~~------~~~-~~~~ 67 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGD-------------PCIYVTTE------ESR-DSII 67 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTC-------------CEEEEESS------SCH-HHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCC-------------eEEEEEcc------cCH-HHHH
Confidence 5688887 799999999999999999999999998874 2222 11211111 011 1111
Q ss_pred HHHHhcCCC-CCCcHHHHHHHHHhhc--CCCCCCCCCCCccccchhhhhhhhccCCc--EEEEeCCCCCC--ChHHHHHH
Q 025256 175 EAHARRGAP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DGGVWKDV 247 (255)
Q Consensus 175 ~~~~~~g~~-~~~~~~~~~~~l~~l~--l~~~~~~~~lS~G~~qrv~~a~~l~~~~~--ililDEp~~~L--D~~~~~~l 247 (255)
......++. +...... ..+++.+. ..........|.++.++...+.+...+|+ +||+|||++++ |+..+.++
T Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~ 146 (235)
T 2w0m_A 68 RQAKQFNWDFEEYIEKK-LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI 146 (235)
T ss_dssp HHHHHTTCCCGGGBTTT-EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH
T ss_pred HHHHHhcchHHHHhhCC-EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH
Confidence 111123321 1110000 00000000 00001112337777776666666667999 99999999777 98887787
Q ss_pred HHHHHh
Q 025256 248 SSMFDE 253 (255)
Q Consensus 248 ~~ll~~ 253 (255)
.+.|..
T Consensus 147 ~~~l~~ 152 (235)
T 2w0m_A 147 SYYLKR 152 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 109
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.35 E-value=1.5e-13 Score=134.70 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=67.5
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
+++|++|+ ++|++++|+||||||||||||+|+|+... ...|..+ +..... +.+-...
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~v-----pa~~~~-i~~~~~i-------------- 653 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYV-----PAQKVE-IGPIDRI-------------- 653 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCB-----SSSEEE-ECCCCEE--------------
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCccc-----chhccc-ceeHHHH--------------
Confidence 67999999 99999999999999999999999998620 1122100 001111 1110000
Q ss_pred HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHH-HHHHH
Q 025256 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFD 252 (255)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l-~~ll~ 252 (255)
....+.. +++. .....|+.++++ ++.+...+.+|+++|+|||+.|+|+.....+ +++++
T Consensus 654 -~~~~~~~------------d~l~----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~ 713 (800)
T 1wb9_A 654 -FTRVGAA------------DDLA----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAE 713 (800)
T ss_dssp -EEEEC---------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHH
T ss_pred -HhhCCHH------------HHHH----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHH
Confidence 0011110 0111 112346667654 4444556789999999999999998766554 44444
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.32 E-value=1.7e-12 Score=116.33 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=32.5
Q ss_pred cccccce-------ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl-------~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.++++.+ .+.+|++++|+||||||||||+++|+|+++
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4566665 678899999999999999999999999996
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.32 E-value=6.9e-13 Score=118.67 Aligned_cols=121 Identities=19% Similarity=0.170 Sum_probs=77.9
Q ss_pred ccccc-ceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~v-sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~ 174 (255)
.|+.+ .+.+++|++++|+||||||||||++.|++.... .|++|. ..|.++.+++.... . .+...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~-~~~~Gg---------~~G~vi~i~~e~~~----~-~~~i~ 183 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL-PPEEGG---------LNGSVIWIDTENTF----R-PERIR 183 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTS---------CSCEEEEEESSSCC----C-HHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-chhcCC---------CCCeEEEEeCCCCC----C-HHHHH
Confidence 34554 588999999999999999999999999999830 033320 01344566665321 0 11122
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhc-------cCCcEEEEeCCCCCCChH
Q 025256 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~-------~~~~ililDEp~~~LD~~ 242 (255)
......++ +. .++++++.+... ..+.++.+++..+.+++ .+|++||+|||++++|+.
T Consensus 184 ~i~q~~~~----~~---~~v~~ni~~~~~----~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 184 EIAQNRGL----DP---DEVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp HHHHTTTC----CH---HHHGGGEEEEEC----CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred HHHHHcCC----CH---HHHhhCEEEEec----CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 22222222 11 256666654321 12467888888888887 689999999999999985
No 112
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.31 E-value=3.8e-13 Score=118.16 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=28.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+|++++|+||||||||||+++|+|+++ |++|+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~ 132 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKK 132 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCE
Confidence 699999999999999999999999996 65553
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.29 E-value=1.1e-13 Score=124.39 Aligned_cols=133 Identities=9% Similarity=0.042 Sum_probs=75.0
Q ss_pred ccccceecCC--CeEEEEECCCCCcHHHHHHHHHHhhcccCCCC----ccc-cCCCCCCCCeeEEEecCCCCCcCccCCc
Q 025256 97 TSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASS-FDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (255)
Q Consensus 97 l~~vsl~i~~--Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~----G~~-~~~~~~~~~~g~~i~~d~~~~~~~~l~~ 169 (255)
...|+++|.+ |+.++|+||||||||||+++|+|++. |++ |++ +++. .++.... ++.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~-----------~~~~~~~---~~~ 220 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEK-----------LGGDEQA---MQY 220 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHS-----------SSSCTTS---SCT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhh-----------cCCCccc---CCh
Confidence 3679999999 99999999999999999999999996 665 431 1100 0111110 111
Q ss_pred ccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCC----CCCCCCCccccchhhhhhhh-ccCCcEEEEeC---CC----
Q 025256 170 MEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGS----VYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY---- 236 (255)
Q Consensus 170 ~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~----~~~~~lS~G~~qrv~~a~~l-~~~~~ililDE---p~---- 236 (255)
.+ .. ..++ ++.. .....++.+++.+... ..+...++|++++..++.++ ..+|+++++|| |+
T Consensus 221 ~~-~~----~I~~~~q~~-~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g 294 (365)
T 1lw7_A 221 SD-YP----QMALGHQRY-IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDG 294 (365)
T ss_dssp TT-HH----HHHHHHHHH-HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----
T ss_pred hH-HH----HHHHHHHHH-HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCC
Confidence 11 00 0111 1100 0111233333332211 01113355667777666665 46899999999 65
Q ss_pred --CCCChHHHHHHHHHHH
Q 025256 237 --LFLDGGVWKDVSSMFD 252 (255)
Q Consensus 237 --~~LD~~~~~~l~~ll~ 252 (255)
+++|+..+..+.++|.
T Consensus 295 ~~~sld~~~r~~l~~~l~ 312 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLK 312 (365)
T ss_dssp ------CCSHHHHHHHHH
T ss_pred CcCCccHHHHHHHHHHHH
Confidence 5899999999988884
No 114
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.27 E-value=2.6e-13 Score=124.04 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=84.3
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---CCee
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---PDVA 152 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---~~~g 152 (255)
.++++++.+.|+... +|+++ + ..+|++++|+|||||||||||++|+|+++ |++|+ .+.++... +...
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~ 213 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG 213 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred CCCHHHcCCCHHHHH----HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence 467888988887643 66888 5 38899999999999999999999999997 88888 33332211 1111
Q ss_pred EEEecC---CCCC---------cCccC----------CcccChHHHHHhcCC-----CCCCcHHHHHHHHHhhcCCCCCC
Q 025256 153 TVLPMD---GFHL---------YLSQL----------DAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVY 205 (255)
Q Consensus 153 ~~i~~d---~~~~---------~~~~l----------~~~e~~~~~~~~~g~-----~~~~~~~~~~~~l~~l~l~~~~~ 205 (255)
. +.+. ++.. ..++. ++.+.... ...|. ....+.....+.+..+++.....
T Consensus 214 q-~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a--~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~ 290 (418)
T 1p9r_A 214 Q-TQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQA--SLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLI 290 (418)
T ss_dssp E-EECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHH--HHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHH
T ss_pred e-EEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHH--HHhCCCcccccchhhHHHHHHHHHHcCCcHHHH
Confidence 1 1111 1100 00001 11111111 11121 01112233344566666554444
Q ss_pred CCCCCccccchhhhhhhhccCCcEEEE
Q 025256 206 APSFDHGVGDPVEDDILVGLQHKVVIV 232 (255)
Q Consensus 206 ~~~lS~G~~qrv~~a~~l~~~~~ilil 232 (255)
...||+|++|| ++++++.+|++..-
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 55799999999 88999999998753
No 115
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.26 E-value=9e-13 Score=106.39 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=57.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcC----C-
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----A- 182 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g----~- 182 (255)
++++|+|+||||||||++.|+|++. |+ | ...|. |.+++..+.. ++............+ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~-g---------~~~G~-I~~dg~~i~~--~~~~~~d~~r~~~ig~~~~~~ 66 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ER-G---------LRVAV-VKRHAHGDFE--IDKEGKDSWKIYNSGADVVIA 66 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HT-T---------CCEEE-EEC--------------CHHHHHHHHTCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hc-C---------CceEE-EEEcCccccc--CCccchhHHHHHhcCCceEEE
Confidence 5899999999999999999999995 32 0 01455 5666654221 110000111112233 1
Q ss_pred CCCC-------cHH---HHHHHHHh-hcCCCCCC-CCCCCccccchhhhhhhhccCCcE
Q 025256 183 PWTF-------NPL---LLLNCLKN-LRNQGSVY-APSFDHGVGDPVEDDILVGLQHKV 229 (255)
Q Consensus 183 ~~~~-------~~~---~~~~~l~~-l~l~~~~~-~~~lS~G~~qrv~~a~~l~~~~~i 229 (255)
.++. +.+ .+.++++. +. +.+.. ...||+||+||+++||+++.+|++
T Consensus 67 ~~~~~~~i~~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 67 SPVKLAFIRRVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp CSSEEEEEEECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred CCCcEEEEecCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 2211 011 23344544 43 32221 124999999999999999998876
No 116
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.23 E-value=4.7e-14 Score=119.82 Aligned_cols=42 Identities=10% Similarity=-0.040 Sum_probs=33.5
Q ss_pred CCCCCCccccchhhhhhhh-ccCCcEEEEe----CCCCCCChHHHHHHHHHHHh
Q 025256 205 YAPSFDHGVGDPVEDDILV-GLQHKVVIVD----GNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 205 ~~~~lS~G~~qrv~~a~~l-~~~~~ililD----Ep~~~LD~~~~~~l~~ll~~ 253 (255)
.+..+|| |+ +++ +.+|+++++| ||++++|+...+.+.+.+..
T Consensus 149 ~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 149 WIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp EEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 3456777 44 456 8899999999 99999999988888877754
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.21 E-value=2.8e-11 Score=99.97 Aligned_cols=110 Identities=16% Similarity=0.081 Sum_probs=66.2
Q ss_pred cccccce-ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (255)
Q Consensus 96 ~l~~vsl-~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~ 174 (255)
.|+.+.. .+++|++++|+||||||||||++.|++ .. .... +.++.... .+. +...
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~----------------~~~v--~~i~~~~~----~~~-~~~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS----------------GKKV--AYVDTEGG----FSP-ERLV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH----------------CSEE--EEEESSCC----CCH-HHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc----------------CCcE--EEEECCCC----CCH-HHHH
Confidence 4566655 689999999999999999999999999 31 1112 22322210 111 1111
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccc--cchhhhhhhhccC-CcEEEEeCCCCCCChH
Q 025256 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV--GDPVEDDILVGLQ-HKVVIVDGNYLFLDGG 242 (255)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~--~qrv~~a~~l~~~-~~ililDEp~~~LD~~ 242 (255)
......+. +. .++++++.+ ...+.++ +++++.+++++.+ |+++|+|||++++|..
T Consensus 64 ~~~~~~~~----~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 64 QMAETRGL----NP---EEALSRFIL------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp HHHHTTTC----CH---HHHHHHEEE------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred HHHHhcCC----Ch---HHHhhcEEE------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 11122221 11 123444332 2334444 4567777788775 9999999999999863
No 118
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.20 E-value=2.4e-11 Score=97.87 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=29.3
Q ss_pred ceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+|.+.+|+.++|.||||+|||||++.|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46677899999999999999999999999984
No 119
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.19 E-value=1.7e-11 Score=107.13 Aligned_cols=131 Identities=11% Similarity=-0.012 Sum_probs=79.3
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (255)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++.+. +.. +. +.+
T Consensus 77 ~~~~~l~~~~~~~~------~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~-------------~~-v~l 131 (295)
T 1ls1_A 77 TVYEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKG-------------RR-PLL 131 (295)
T ss_dssp HHHHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTT-------------CC-EEE
T ss_pred HHHHHHHHHHCCCC------ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcC-------------Ce-EEE
Confidence 45677888886521 678888 899999999999999999999999995 222 22 222
Q ss_pred CCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCC-C
Q 025256 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN-Y 236 (255)
Q Consensus 158 d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp-~ 236 (255)
.+.+... + ... ..+..+.+..++..-......+-.+-+|.+++.+...+++++|+|+| +
T Consensus 132 ~~~d~~~---~-----~~~------------~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 132 VAADTQR---P-----AAR------------EQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGR 191 (295)
T ss_dssp EECCSSC---H-----HHH------------HHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred ecCCccc---H-----hHH------------HHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 2222111 0 000 00111223333221000001111223466677766679999999998 9
Q ss_pred CCCChHHHHHHHHHHHh
Q 025256 237 LFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 237 ~~LD~~~~~~l~~ll~~ 253 (255)
.++|.....++.++.+.
T Consensus 192 ~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 192 LQIDEPLMGELARLKEV 208 (295)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhh
Confidence 99998888887776553
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.17 E-value=9.1e-12 Score=111.86 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=43.7
Q ss_pred EEccceee---ccccccccc-------cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 79 ~i~~lsk~---y~~~~~~i~-------~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++++++. |+.....++ ++++++|.+++|++++|+||||||||||+++|+|++.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56777777 753212222 3499999999999999999999999999999999995
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=4.8e-11 Score=108.96 Aligned_cols=157 Identities=10% Similarity=0.010 Sum_probs=83.1
Q ss_pred ceEEEccceeeccccccccccccccceecCCCeE--EEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC---CCCCCC
Q 025256 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS---QVKPPD 150 (255)
Q Consensus 76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Gei--v~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~---~~~~~~ 150 (255)
..+++.+ ++.|++. . ++++||++++|++ ++|+||||||||||+++|+|+.- .|..... ......
T Consensus 15 ~~l~~~~-~~~y~~~--~---L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 15 RTVPLAG-HVGFDSL--P---DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQS 83 (427)
T ss_dssp --CCCCC-CC-CC----C---HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEE
T ss_pred ceEEEee-EEEECCe--e---cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEee
Confidence 4566777 8899762 2 6999999999999 99999999999999999999851 1210000 000011
Q ss_pred eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCc------------HHHHHHHHHhh-cCCC------CCCC-----
Q 025256 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN------------PLLLLNCLKNL-RNQG------SVYA----- 206 (255)
Q Consensus 151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~------------~~~~~~~l~~l-~l~~------~~~~----- 206 (255)
.+. +.++.... ..+++.+++.+ ....+ ...+...++.. +... +..+
T Consensus 84 i~~-v~Q~~~l~--~~ltv~D~~~~-------g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~ 153 (427)
T 2qag_B 84 NTY-DLQESNVR--LKLTIVSTVGF-------GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLY 153 (427)
T ss_dssp EEE-EEEC--CE--EEEEEEEEECC-------CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEE
T ss_pred EEE-EeecCccc--cccchhhhhhh-------hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEE
Confidence 222 33322111 12444443322 11111 11222333332 2211 1111
Q ss_pred --CCCCccccc-hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 207 --PSFDHGVGD-PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 207 --~~lS~G~~q-rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
...+.|... -+.++++|..+.+||++|+++..|.+.....+.+.+.+
T Consensus 154 fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 154 FIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 011122221 16788888889999999999999998777777666653
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.14 E-value=7.8e-11 Score=92.73 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=28.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++++ +|+.++|+||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555 899999999999999999999999984
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.14 E-value=1.4e-11 Score=99.93 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=26.3
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+++|++++|+||||||||||+++|++..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 47789999999999999999999999973
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.13 E-value=4.2e-11 Score=100.28 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=26.1
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-..++|++++|+||||||||||+++|+|+++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3578999999999999999999999999983
No 125
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.12 E-value=5.4e-11 Score=110.27 Aligned_cols=45 Identities=29% Similarity=0.316 Sum_probs=42.0
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~ 144 (255)
+|+++||++++ ++++|+||||||||||+++|+|++. |++|+ .+++
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g 64 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRN 64 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECC
Confidence 77999999999 9999999999999999999999998 99999 4555
No 126
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.11 E-value=5.1e-12 Score=112.51 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=54.1
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
.|++++++++++.|+... ++++++|++.+|++++|+||||||||||+++|+|++. |+.|+
T Consensus 26 ~i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~ 85 (337)
T 2qm8_A 26 AITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHK 85 (337)
T ss_dssp HHHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred HHHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCE
Confidence 466789999999997644 6799999999999999999999999999999999997 77777
No 127
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.11 E-value=1.2e-10 Score=102.26 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=65.9
Q ss_pred ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHH
Q 025256 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (255)
Q Consensus 99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~ 178 (255)
.+++...+|++++|+|||||||||+++.|++.+. +..| ...++..|-+ + . ..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~-----------kV~lv~~D~~---r---~-----~a--- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGK-----------SVVLAAADTF---R---A-----AA--- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC-----------CEEEEEECTT---C---H-----HH---
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCC-----------EEEEEccccc---c---H-----HH---
Confidence 3566678899999999999999999999999995 2222 1111222221 1 0 00
Q ss_pred hcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchh---hhhhhhccCCcEEEEeCCCC
Q 025256 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 179 ~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv---~~a~~l~~~~~ililDEp~~ 237 (255)
.+.+..+.+.+++.. ++..|+|+.+++ ++++++..+++++|+|+|..
T Consensus 148 ---------~eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ---------IEQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---------HHHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---------HHHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 011223344444331 346688999998 78888899999999999865
No 128
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.10 E-value=1.1e-10 Score=105.30 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=30.9
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+|++++ +++|++++|+||||||||||+++|+|++.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345554 78999999999999999999999999995
No 129
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.09 E-value=4.2e-11 Score=94.28 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCCCCCCCccccchhhhh------hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 203 ~~~~~~lS~G~~qrv~~a------~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+..+..|||||+||+++| ++++.+|+++|+||||++||+..++.+.+++.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 108 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 108 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHH
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 456679999999999876 789999999999999999999999999999875
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.09 E-value=3.5e-12 Score=113.16 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=64.2
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~ 182 (255)
..++|++++|+||||||||||+++|+|+++ |+.|+ +.+.+.+.++ ....+.........++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~--------------V~l~g~D~~r--~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFS--------------VVIAASDTFR--AGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC--------------EEEEEECCSS--TTHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCE--------------EEEEeecccc--cchHHHHHHHHHHcCc
Confidence 447899999999999999999999999996 55543 3333333222 1222222333344552
Q ss_pred ---CCCCcHHHHHHHHHhhcCCC----CCCCCCCCcc-------ccchhhhhhhhccCCcEEEEeCCCC
Q 025256 183 ---PWTFNPLLLLNCLKNLRNQG----SVYAPSFDHG-------VGDPVEDDILVGLQHKVVIVDGNYL 237 (255)
Q Consensus 183 ---~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G-------~~qrv~~a~~l~~~~~ililDEp~~ 237 (255)
++.....+...+.+++.... +.-+-...|. +.+...+++++..++.++++|.++.
T Consensus 186 ~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 186 KVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred eEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 33333334444555443221 1000001111 1222246778887888889996665
No 131
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.04 E-value=1.6e-12 Score=115.43 Aligned_cols=60 Identities=25% Similarity=0.367 Sum_probs=47.8
Q ss_pred eEEEccceeeccccccccccccccceecCCC-------eEEEEECCCCCcHHHHHHHHHHhhccc-CCCCcc
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS 140 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~G-------eiv~LiGpNGsGKSTLlk~L~gll~~~-~p~~G~ 140 (255)
+++.+++++.|+... +++++++.+++| +.++|.||||+|||||+++|++.+... .+.+|.
T Consensus 18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~ 85 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 85 (334)
T ss_dssp TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech
Confidence 456778888898744 669999998876 889999999999999999999998211 155665
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.04 E-value=1.1e-12 Score=119.78 Aligned_cols=129 Identities=19% Similarity=0.158 Sum_probs=75.9
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCC-CCCcCccCCcccChHHH
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAMEDPKEA 176 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~-~~~~~~~l~~~e~~~~~ 176 (255)
++++|+++.|+.++|+|+||||||||+++|++.. |.-+.. ......+..|. +.+++ ..+...+.+..... .
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~~-~ftTl~p~~G~-V~~~~~~~~~l~DtpGli~~--a 219 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAPY-PFTTLSPNLGV-VEVSEEERFTLADIPGIIEG--A 219 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECCC-TTCSSCCEEEE-EECSSSCEEEEEECCCCCCC--G
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccCc-ccceecceeeE-EEecCcceEEEEeccccccc--h
Confidence 6899999999999999999999999999999985 311110 00011344555 55554 21111111111000 0
Q ss_pred HHhcCCCCCCcHHHHHHHHHh-------hcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHH
Q 025256 177 HARRGAPWTFNPLLLLNCLKN-------LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 244 (255)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~l~~-------l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~ 244 (255)
....++ .. .+...++. +.+. ...+..||.|+++++.++++++..|.+|++ +.+|....
T Consensus 220 ~~~~~L----~~-~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 220 SEGKGL----GL-EFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp GGSCCS----CH-HHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred hhhhhh----hH-HHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 000111 11 11111111 1112 233446899999999999999999999999 88887655
No 133
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.98 E-value=9.5e-11 Score=101.27 Aligned_cols=35 Identities=40% Similarity=0.491 Sum_probs=32.8
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++++++.+++| ++|.||||||||||+++|+|.+.
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 669999999999 99999999999999999999984
No 134
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.97 E-value=7.7e-11 Score=100.62 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=35.9
Q ss_pred ceEEEccc-eeec-cccccccccccccceecCC---CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 76 ~~l~i~~l-sk~y-~~~~~~i~~l~~vsl~i~~---Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++++++|+ ++.| +... +|+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 9999 4433 77999999999 99999999999999999999999774
No 135
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.96 E-value=1.7e-09 Score=90.56 Aligned_cols=111 Identities=13% Similarity=0.162 Sum_probs=60.3
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl--l~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~ 180 (255)
-+++|++++|+||||||||||++.|++. +. |+.| ....+. +.+++.... +. +........+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g--------~~~~~~-~~i~~~~~~----~~-~~~~~~~~~~ 82 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRG--------GGEGKA-MYIDTEGTF----RP-ERLLAVAERY 82 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGT--------CCSSEE-EEEESSSCC----CH-HHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcC--------CCCCeE-EEEECCCCc----CH-HHHHHHHHHc
Confidence 4789999999999999999999999995 32 1111 012333 555544211 11 1112223334
Q ss_pred CCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccch-hhhhhhh--ccCCcEEEEeCCCCCCChH
Q 025256 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP-VEDDILV--GLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 181 g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr-v~~a~~l--~~~~~ililDEp~~~LD~~ 242 (255)
++. . .++++++.+. ..++..+... +..+..+ ..+|+++|+|||+..+|..
T Consensus 83 g~~----~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 83 GLS----G---SDVLDNVAYA-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp TCC----H---HHHHHTEEEE-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred CCC----H---HHHhhCeEEE-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 431 1 2244554332 1233333222 2222222 2589999999999999874
No 136
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.94 E-value=5.9e-11 Score=106.23 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=61.9
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cC-CC-C---CCCCeeEEEecCCCCCcCccCCcc
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD-SQ-V---KPPDVATVLPMDGFHLYLSQLDAM 170 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~-~~-~---~~~~~g~~i~~d~~~~~~~~l~~~ 170 (255)
++++++.+ +|++++|+||||+|||||+++|+|++.. |+.|++ .. +. . .....+. +..++..+
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~-v~q~~~l~-------- 273 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYH-FPHGGDVI-------- 273 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEE-CTTSCEEE--------
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEE-ECCCCEec--------
Confidence 35566644 7999999999999999999999998831 567773 22 21 1 0111122 22222211
Q ss_pred cChHHHHHhcCCCCCCcHH----HHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256 171 EDPKEAHARRGAPWTFNPL----LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (255)
Q Consensus 171 e~~~~~~~~~g~~~~~~~~----~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~ 224 (255)
+.+.. . .+++. ..... .+.++++.+++. .+.....+| |+++|+++|.+++
T Consensus 274 dtpgv-~-e~~l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 274 DSPGV-R-EFGLW-HLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp ECHHH-H-TCCCC-CCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred CcccH-H-Hhhhc-CCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 11111 1 12221 11211 223455555554 355667899 9999999998753
No 137
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.92 E-value=3.5e-10 Score=94.76 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=22.9
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHH-Hhh
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI 131 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~-gll 131 (255)
..++||++++|++++|+||||||||||+++|+ |++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 48999999999999999999999999999999 998
No 138
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.88 E-value=1.3e-09 Score=87.94 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=45.2
Q ss_pred CCCCCCCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 204 VYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 204 ~~~~~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
..+..|||||+||+++|++++ .+|+++|+|||+++||+.+.+.+.+++.+.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~ 114 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES 114 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh
Confidence 445689999999999999996 457999999999999999999999998753
No 139
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.88 E-value=1e-09 Score=96.05 Aligned_cols=115 Identities=14% Similarity=-0.001 Sum_probs=66.4
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-c---CCCCCC--------CCeeEEEecCCCCCcC--ccC
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-F---DSQVKP--------PDVATVLPMDGFHLYL--SQL 167 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~---~~~~~~--------~~~g~~i~~d~~~~~~--~~l 167 (255)
+++.+|++++|+||||||||||+|+|+ ++. |++|++ + +|.... +..|.++...|+.... ..+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 356679999999999999999999999 887 999994 4 442211 1234422222222110 224
Q ss_pred CcccCh--HHH----H--HhcCC-CCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchhhhhh
Q 025256 168 DAMEDP--KEA----H--ARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 168 ~~~e~~--~~~----~--~~~g~-~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~ 221 (255)
++ ++. .+. . ...+. ........+.++++.+++.. +.++..||+..++++++|+
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 443 111 0 11221 22233356788899888863 3455678876666667765
No 140
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.85 E-value=6.6e-11 Score=102.03 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=41.6
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+++++.+.|+... +++++++.+++| ++|+||||+|||||+++|++.+
T Consensus 50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 45678888886643 679999999999 8999999999999999999997
No 141
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.85 E-value=1.3e-09 Score=89.05 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.3
Q ss_pred ceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4677899999999999999999999999997
No 142
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.84 E-value=2.5e-09 Score=105.93 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=55.4
Q ss_pred HHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCc--EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 191 ~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~--ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
..+.+..+++. .+..+.+|||||+||+++|++|+.+|+ +|||||||++||+...+.+.++|.+.
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L 512 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL 512 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 34567777775 356788999999999999999998777 99999999999999999999998764
No 143
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.83 E-value=2.4e-09 Score=102.23 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=88.0
Q ss_pred EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-cc-ccCCCCC---CCCeeEE
Q 025256 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQVK---PPDVATV 154 (255)
Q Consensus 80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~~~~~---~~~~g~~ 154 (255)
-++++..|+... +++++++.+..|+.++|+||||+|||||++.|++++. +.. |. .+.++.. .+..+.
T Consensus 37 p~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~~- 108 (604)
T 3k1j_A 37 EKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIKT- 108 (604)
T ss_dssp SSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEEE-
T ss_pred ccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEEE-
Confidence 356677777644 6799999999999999999999999999999999995 333 11 1111110 111111
Q ss_pred EecCCCC-C-------------------cCccCCcccChHHHHHhcCC-CCCC---cHHHHHHHHHhhcCCCCCCCCCCC
Q 025256 155 LPMDGFH-L-------------------YLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFD 210 (255)
Q Consensus 155 i~~d~~~-~-------------------~~~~l~~~e~~~~~~~~~g~-~~~~---~~~~~~~~l~~l~l~~~~~~~~lS 210 (255)
+...... + ....++...+... ..... +... .......++..+.. .......++
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v--~~~~~~~~~~v~~~~~~~~~L~G~~~~-~~~~~g~~~ 185 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLV--DNCGRTKAPFIDATGAHAGALLGDVRH-DPFQSGGLG 185 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEE--CCTTCSSCCEEECTTCCHHHHHCEECC-CCC----CC
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceee--ccccCCCCCEEEcCCCCHHhcCceEEe-chhhcCCcc
Confidence 1100000 0 0000000000000 00000 0000 00001111211111 112224678
Q ss_pred ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.|+++++..+.....++.+|++||... |++..|..+.+.|++
T Consensus 186 ~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 186 TPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 888999887777778999999999988 689999999998874
No 144
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.79 E-value=3.1e-09 Score=105.14 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=69.4
Q ss_pred EecCCCCCcC-ccCCcccChHHHHHhcCCCCCC---------cHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhh
Q 025256 155 LPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTF---------NPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDI 221 (255)
Q Consensus 155 i~~d~~~~~~-~~l~~~e~~~~~~~~~g~~~~~---------~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~ 221 (255)
+.++|..+.. ..+++.++..+ ..+.+++... ....-.+.++.++++ .+..+.+|||||+||+++|+
T Consensus 439 v~~~g~~i~q~~~ltV~e~~~f-~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~ 517 (972)
T 2r6f_A 439 VLVGGKHIGEVTAMSVTEALAF-FDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLAT 517 (972)
T ss_dssp EESSSCBHHHHHTSBHHHHHHH-HHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHH
T ss_pred eEECCCcHHHHhhCCHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccccCCHHHHHHHHHHH
Confidence 4555554431 23556666666 3444443310 011113457778876 46778899999999999999
Q ss_pred hhccC--CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 222 LVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 222 ~l~~~--~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+|..+ |++|||||||++||+...+.+.++|..
T Consensus 518 aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~ 551 (972)
T 2r6f_A 518 QIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS 551 (972)
T ss_dssp HHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred HHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHH
Confidence 99987 499999999999999999999998875
No 145
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.79 E-value=2.5e-09 Score=99.20 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=33.7
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++||++.+|++++|+||||||||||+++|+|+++
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999996
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1.9e-08 Score=88.95 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.3
Q ss_pred hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+..+++++|+|||+. ||+..+..+.+++++
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEK 160 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence 566899999999999 999999999999875
No 147
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.77 E-value=7.2e-09 Score=90.49 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|++++|+||||+||||+++.|++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999995
No 148
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.73 E-value=2.9e-09 Score=87.39 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=27.8
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
...+|++++|+|+||||||||+++|++++.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999999984
No 149
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.73 E-value=1.3e-08 Score=92.53 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=60.6
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHH--HhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~--gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~ 180 (255)
-|++|++++|+||||||||||++.|+ +++. ++.| ... +.++.+++.... .. +........+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~G--------g~~-~~viyid~E~~~----~~-~rl~~~a~~~ 236 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIG--------GGE-GKCLYIDTEGTF----RP-VRLVSIAQRF 236 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT--------CCS-SEEEEEESSSCC----CH-HHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccC--------CCC-CcEEEEeCCCcc----CH-HHHHHHHHHc
Confidence 57899999999999999999999664 4442 2222 011 223556554321 11 1122233445
Q ss_pred CCCCCCcHHHHHHHHHhhcCCCCCCCCCCCc-cccchhhhhhhh--ccCCcEEEEeCCCCCCChH
Q 025256 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH-GVGDPVEDDILV--GLQHKVVIVDGNYLFLDGG 242 (255)
Q Consensus 181 g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~-G~~qrv~~a~~l--~~~~~ililDEp~~~LD~~ 242 (255)
++. ..++++++.+.. .++. .+.+.+..+..+ ..+|++||+|+|++.+|..
T Consensus 237 gl~-------~~~vleni~~~~-----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 237 GLD-------PDDALNNVAYAR-----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp TCC-------HHHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred CCC-------hHhHhhcEEEec-----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 542 125566655432 1222 122222222222 3579999999999999864
No 150
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.72 E-value=1.3e-08 Score=81.75 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=34.5
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+++++++.+| +.+|+||||||||||+++|.+++. +..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCccc
Confidence 6778889888 999999999999999999999986 66654
No 151
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.71 E-value=9.2e-10 Score=92.58 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=40.6
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~ 144 (255)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++. |++|. .+++
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC----
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECC
Confidence 5788888776642 344555 8999999999999999999999997 99998 3444
No 152
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.70 E-value=2.9e-08 Score=81.44 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=28.6
Q ss_pred ccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++--.+.+|.+++|+|++||||||+++.|++.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344467889999999999999999999999976
No 153
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.70 E-value=3.3e-09 Score=86.04 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=32.9
Q ss_pred cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
...+.+|++++.+++++++| ++++|..+.+++.+.+.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34567889999999999999 999999999999988764
No 154
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.70 E-value=6e-09 Score=85.32 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=35.8
Q ss_pred ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+|++..++... +.+.+++..++|++++|+|||||||||+++.|++.+
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35666665543 568888889999999999999999999999999998
No 155
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.69 E-value=1.4e-08 Score=100.84 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=53.2
Q ss_pred HHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC--CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~--~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+.++.++++ .+..+.+|||||+||+++|++|..+ |++|||||||++||+...+.+.++|..
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~ 568 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTR 568 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHH
Confidence 346667765 4667889999999999999999988 589999999999999999999998865
No 156
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.69 E-value=1.6e-08 Score=99.44 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=53.8
Q ss_pred HHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+.+..++++ .+..+..|||||+|||++|++|+.+| .++||||||++||+...+.+.++++..
T Consensus 361 ~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L 427 (842)
T 2vf7_A 361 DVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL 427 (842)
T ss_dssp HHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH
Confidence 356667775 36678899999999999999999998 499999999999999999999988653
No 157
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.61 E-value=2.4e-08 Score=93.56 Aligned_cols=49 Identities=14% Similarity=0.015 Sum_probs=45.1
Q ss_pred CCCC-CccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256 206 APSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (255)
Q Consensus 206 ~~~l-S~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~ 254 (255)
+..| ||||+||+++|++++.+| ++||+|||+++||+.....+.++|.+.
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~ 445 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL 445 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 4467 999999999999999999 999999999999999999999998753
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=2.2e-08 Score=81.84 Aligned_cols=37 Identities=35% Similarity=0.382 Sum_probs=25.8
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++|+||++.+|++++|+|++||||||+++.|+..+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 7799999999999999999999999999999999874
No 159
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.60 E-value=4.7e-08 Score=79.41 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=30.5
Q ss_pred hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
....|++++.+++++++| ++++|....+++.+.+.+
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 345688888899999999 999999999988887754
No 160
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.59 E-value=8e-09 Score=96.67 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=39.2
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+++++++.+++|++++|+||||||||||+++|+|++. |+.|.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~gi 290 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKV 290 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCE
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCE
Confidence 5689999999999999999999999999999999997 78887
No 161
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.58 E-value=2e-08 Score=82.34 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++|++++|+||||||||||+++|+|++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999999999998
No 162
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.58 E-value=2.6e-08 Score=81.27 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=28.9
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (255)
++.+|++++|+|||||||||++++|++++. |+.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 578999999999999999999999999985 5444
No 163
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.56 E-value=5.9e-08 Score=79.31 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=25.3
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+..++|++++|+||||||||||+++|++.+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999999999987
No 164
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.54 E-value=2.8e-08 Score=80.38 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=24.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
|++++|+||||||||||+++|+|++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999984
No 165
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.51 E-value=7e-09 Score=93.88 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=26.0
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
.+.+|..+||+|+||+|||||+++|+|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999999994
No 166
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.46 E-value=8.9e-08 Score=77.04 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+|++++|+||||||||||+++|++++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999987
No 167
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.46 E-value=4.4e-08 Score=85.53 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=30.6
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~ 141 (255)
|++..|++++|+||||||||||+++|+|++. |++|++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i 200 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEV 200 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC----
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccce
Confidence 4566899999999999999999999999997 899983
No 168
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.45 E-value=2.9e-08 Score=84.04 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=41.6
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+++++.+.|+... +++++++++++| ++|.||||+|||||+++|++.+
T Consensus 26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 45678888886543 679999999999 8999999999999999999987
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.41 E-value=1.1e-07 Score=88.11 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=36.0
Q ss_pred EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++++.+.+.... .+.++++.+++| +.|.||+|+|||||++.|++...
T Consensus 27 ~l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 27 ELKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 3445544454322 457788888877 78999999999999999999873
No 170
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.38 E-value=1.2e-07 Score=85.44 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=34.5
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++++++.+++|++++|+||||||||||+++|++.+
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 679999999999999999999999999999999987
No 171
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.36 E-value=2e-07 Score=85.14 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=43.1
Q ss_pred CCCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 208 ~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
.||+||++++++|++++ .+|+++|+|||+++||+..+..+.+++.+
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 382 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR 382 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 48999999999999998 58999999999999999999999999865
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.35 E-value=4.8e-07 Score=75.49 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=27.9
Q ss_pred ccccc-ceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~v-sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.|+.+ .--+++|++++|+||||||||||+..++...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555 4568899999999999999999966555443
No 173
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.35 E-value=4.9e-08 Score=85.58 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~ 141 (255)
+++.+|++++|+||||+|||||+|+|+|++. |+.|++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I 204 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEI 204 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccce
Confidence 7788999999999999999999999999997 888884
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.35 E-value=4.4e-07 Score=83.54 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=33.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.|+++..-+.+|+++.|+|++|+|||||+..+++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688887899999999999999999999999999873
No 175
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.33 E-value=3.9e-07 Score=83.23 Aligned_cols=46 Identities=17% Similarity=0.362 Sum_probs=38.1
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-|+++|+ +.|++. . .+++.+|++++|+||||||||||+++|++++.
T Consensus 6 ~l~~~~~-~~~~~~-------~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 6 GLELSNF-KSYRGV-------T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEESC-SSCCSE-------E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCE-EEECCc-------e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4788899 788652 1 24467799999999999999999999999985
No 176
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.32 E-value=3e-07 Score=82.51 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=42.6
Q ss_pred CCCCCccccchh------hhhhhhccC-CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256 206 APSFDHGVGDPV------EDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (255)
Q Consensus 206 ~~~lS~G~~qrv------~~a~~l~~~-~~ililDEp~~~LD~~~~~~l~~ll~~ 253 (255)
+..+|+||+||+ ++|+++..+ |+++|+|||+++||+..+..+.+++.+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 332 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK 332 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 347999999988 456778889 999999999999999999999999865
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.32 E-value=3.1e-07 Score=75.64 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++|++++|+||||||||||++.|++.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999984
No 178
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.32 E-value=4e-08 Score=87.31 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=48.1
Q ss_pred ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+.+++.+++.+.|+... +++++++.+.+|.+++|+|++|+|||||++.|++.+.
T Consensus 27 ~i~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 27 AMTLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355678888888887644 6699999999999999999999999999999999985
No 179
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.31 E-value=2.8e-07 Score=74.34 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
|++++|+||||||||||+++|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999999998744
No 180
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.29 E-value=4.7e-07 Score=72.00 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+|++++|+|||||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 569999999999999999999999987
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.28 E-value=1.8e-07 Score=79.47 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHH---HhhcccCCCCccc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASS 141 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~---gll~~~~p~~G~~ 141 (255)
.+|++++|+|||||||||++++|+ |+.. +++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~i 61 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGAI 61 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCce
Confidence 689999999999999999999999 7664 778873
No 182
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.27 E-value=1.5e-06 Score=73.48 Aligned_cols=120 Identities=24% Similarity=0.409 Sum_probs=66.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcC----
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---- 181 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g---- 181 (255)
...+|+|.|++||||||+.+.|+..+.. + .++ .......++..|+++.. +. .....+...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~--~----~~d---~~~~~~~~i~~D~~~~~---~~---~~~~~~~~~g~~~f 85 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ--N----EVD---YRQKQVVILSQDSFYRV---LT---SEQKAKALKGQFNF 85 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG--G----GSC---GGGCSEEEEEGGGGBCC---CC---HHHHHHHHTTCSCT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh--h----ccc---ccCCceEEEecCccccc---cC---hhhhhhhccCCCCC
Confidence 3468999999999999999999987630 0 000 00011224677776421 11 1111111222
Q ss_pred -CCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256 182 -APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (255)
Q Consensus 182 -~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~ 241 (255)
.++.++...+.+.++.+..+.....+.|+.....++.-... ....+++|+|+++...++
T Consensus 86 ~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~-~~~~~~vIveG~~~~~~~ 145 (252)
T 1uj2_A 86 DHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVT-VYPADVVLFEGILAFYSQ 145 (252)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEE-ECCCSEEEEECTTTTSSH
T ss_pred CCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceee-eCCCcEEEEeeeccccCH
Confidence 24455666667777777655444444444433333311111 235689999998876554
No 183
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.26 E-value=2.6e-07 Score=77.27 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=27.2
Q ss_pred ceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
+...++|++++|.|+||||||||+++|+++
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 445688999999999999999999999987
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.23 E-value=5.1e-07 Score=71.47 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.|++++|+|||||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999874
No 185
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.22 E-value=2.2e-07 Score=86.73 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=27.8
Q ss_pred ccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
.+.+++.++..++|+|++||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4678888899999999999999999999875
No 186
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.20 E-value=8e-07 Score=78.29 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=33.3
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+++|++++|++++|+|+||+||||++..|++.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999995
No 187
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.20 E-value=2.2e-06 Score=76.37 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.5
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-+++|+++.|.||+|+|||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988887663
No 188
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.18 E-value=9.5e-07 Score=72.49 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=26.4
Q ss_pred ceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
|+...+|++++|+||||||||||++.|.+..
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3445689999999999999999999999987
No 189
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.16 E-value=8.1e-07 Score=83.74 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=30.9
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (255)
.+++|++++|+|+||||||||+++|++++. |+.|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCC
Confidence 578999999999999999999999999996 6554
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.15 E-value=8.9e-06 Score=74.41 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.+++++||+|+||||++..|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999985
No 191
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=1e-06 Score=82.97 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=41.6
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+-++++.+.|.... ++.++++++ +|++++|+||||+|||||++.|++.+.
T Consensus 84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 33466777775533 678888888 899999999999999999999999994
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.07 E-value=7.8e-06 Score=74.64 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=37.8
Q ss_pred EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+++.+.|+... .+++|+ ++++++++|+||+||||++..|++.+.
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346777886532 677777 899999999999999999999999995
No 193
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.07 E-value=1.3e-06 Score=75.87 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCc-CccCCcccChHH--HH--Hhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKE--AH--ARR 180 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~-~~~l~~~e~~~~--~~--~~~ 180 (255)
++-+|||.||+||||||+.+.|+..+.. ......++..|+++.. ...++. .... .. ..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--------------~~~~~~vI~~D~~~r~~~~~~~~--~~~~~~~~g~~~~ 67 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRFNRADMKA--ELDRRYAAGDATF 67 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSCCHHHHHH--HHHHHHHHTCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeeEeecchhhcCCHHHhhh--hhhhhhhccCcCc
Confidence 4568999999999999999999986620 1111345788887632 110000 0000 00 122
Q ss_pred CC--CCCCcHHHHHHHHHhhcCCCCCCCCCCCcc-----ccchhhhh----hhhccCCcEEEEeCCCCC
Q 025256 181 GA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG-----VGDPVEDD----ILVGLQHKVVIVDGNYLF 238 (255)
Q Consensus 181 g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G-----~~qrv~~a----~~l~~~~~ililDEp~~~ 238 (255)
.. ++.++...+.+.+..+..+.....+.|+++ ...+..-. ..+....+++|+|+++.+
T Consensus 68 ~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~ 136 (290)
T 1a7j_A 68 SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGA 136 (290)
T ss_dssp STTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTT
T ss_pred CCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccc
Confidence 22 344555555566665544444444444221 00111100 112235789999999987
No 194
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.06 E-value=1.2e-06 Score=76.96 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-++++|+|+||||||||+|.|.|+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3689999999999999999999986
No 195
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.04 E-value=2.1e-06 Score=77.25 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=46.2
Q ss_pred eEEEccceeecccccccccccc--------------ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~--------------~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-++++||+..|... +. .++ |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~e--r~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANS--RL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCS--BC-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCC--cc-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 47789999999863 22 456 8999999999999999999999999999999874
No 196
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.02 E-value=3.6e-06 Score=65.73 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=25.1
Q ss_pred cceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 100 vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..+++.+ .+.+|+|||||||||++..|.-.+
T Consensus 17 ~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445554 489999999999999999998665
No 197
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.00 E-value=8e-06 Score=72.50 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCCe--EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Ge--iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+. .+.|.||+|+|||||++.+++.+.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456 899999999999999999999984
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.99 E-value=3.7e-06 Score=69.37 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
+.+++|+||+||||||++++|++.+.-..++.|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~ 38 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence 5689999999999999999999987322256666
No 199
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.98 E-value=4.7e-06 Score=69.76 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.1
Q ss_pred ccccceecC---CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 97 l~~vsl~i~---~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
|.++++.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466666665 899999999999999999999999984
No 200
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.97 E-value=4.9e-06 Score=66.34 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999884
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=2.4e-06 Score=75.36 Aligned_cols=47 Identities=28% Similarity=0.492 Sum_probs=39.6
Q ss_pred cceeeccccccccccccccceecCCCeE--EEEECCCCCcHHHHHHHHHHhhc
Q 025256 82 CMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 82 ~lsk~y~~~~~~i~~l~~vsl~i~~Gei--v~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++..|+... +++.++..++.|++ +.|.||+|+||||+++++++.+.
T Consensus 23 ~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 23 TLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 5556666533 56888899999998 99999999999999999999875
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.90 E-value=3.9e-05 Score=65.92 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++..+.|.||+|+|||||++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999987
No 203
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.90 E-value=4.6e-06 Score=81.69 Aligned_cols=46 Identities=9% Similarity=-0.095 Sum_probs=35.7
Q ss_pred CCCCCCccccchhhhhhhhccCCcEEEEeCCCC-CCChHHHHHHHHH
Q 025256 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDGGVWKDVSSM 250 (255)
Q Consensus 205 ~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~-~LD~~~~~~l~~l 250 (255)
.+-.++.|+.+|..++..++.++++||+||++. ++|......+...
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~ 233 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQ 233 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHH
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHH
Confidence 344567899999988888899999999999996 8886654444433
No 204
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.85 E-value=8.7e-06 Score=65.39 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.8
Q ss_pred ccceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999987
No 205
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.85 E-value=4.8e-06 Score=72.53 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=38.4
Q ss_pred Eccceeeccccccccccccc-cceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 80 i~~lsk~y~~~~~~i~~l~~-vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+++.+.|+... .+ ++++.+ |++++++|+||+||||++..|++.+.
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456777787532 56 788876 99999999999999999999999985
No 206
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.85 E-value=1.5e-05 Score=70.69 Aligned_cols=106 Identities=17% Similarity=0.153 Sum_probs=64.5
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~ 175 (255)
.|+.+.--+.+|+++.|.|++|+|||||+..++.... .. .....++++. ++..+....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a----~~----------g~~Vl~fSlE--------ms~~ql~~R 92 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL----ND----------DRGVAVFSLE--------MSAEQLALR 92 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH----HT----------TCEEEEEESS--------SCHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH----Hc----------CCeEEEEeCC--------CCHHHHHHH
Confidence 4466655789999999999999999999999988763 01 1111112221 121111111
Q ss_pred HH-HhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256 176 AH-ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (255)
Q Consensus 176 ~~-~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD 240 (255)
.. ...++ +...+. -..+|.++.+|+..|...+.+++++|.|+|...++
T Consensus 93 lls~~~~v----~~~~l~-------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 93 ALSDLTSI----NMHDLE-------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHCC----CHHHHH-------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHhhCC----CHHHHh-------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 10 01111 111111 13688899999988888888888999999876544
No 207
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.84 E-value=6.9e-06 Score=66.90 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHH
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~g 129 (255)
.+++|+|+|||||||++++|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999998
No 208
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.84 E-value=3.4e-06 Score=78.57 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=40.6
Q ss_pred EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+++++.+.|.... ++.++++.+++| ++|.||||+|||||++.|++...
T Consensus 41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 45567776676533 569999999998 89999999999999999999873
No 209
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.84 E-value=1.9e-05 Score=70.44 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.7
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 377999999999999999999999999874
No 210
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.82 E-value=9.4e-06 Score=66.23 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.0
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
...+|.+++|+||+|||||||++.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999999877
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.81 E-value=6.2e-05 Score=64.87 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
...+.|.||+|+||||+++.|++.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 36899999999999999999999984
No 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.80 E-value=1e-05 Score=65.75 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++|+|+|||||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 689999999999999999999 5
No 213
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.78 E-value=1.7e-05 Score=63.50 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=27.9
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+...+|.++.|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4456899999999999999999999999984
No 214
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.78 E-value=4.3e-06 Score=74.92 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++|+|++|||||||++.|+|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999876
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.77 E-value=1.5e-05 Score=65.45 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=28.5
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+.+.+|.++.|.|++||||||+++.|++.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5578899999999999999999999999984
No 216
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.74 E-value=8e-06 Score=76.33 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=32.6
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.++++++++.+| +.+|+|+||||||||+..|..++.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 457889999999 999999999999999999999863
No 217
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.72 E-value=1.7e-05 Score=64.41 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 218
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.72 E-value=2.3e-05 Score=64.27 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.2
Q ss_pred ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+..+++.+ .+.+|+|||||||||++..|.-.+.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33445554 5899999999999999999987664
No 219
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.70 E-value=2e-05 Score=70.12 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=28.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
.++.+++|+|++|||||||++.|.|.+. +..|+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~ 104 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHK 104 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCe
Confidence 3588999999999999999999999885 55554
No 220
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.69 E-value=2.4e-05 Score=62.39 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+|.+++|+|++||||||+++.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999999755
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.68 E-value=4.3e-05 Score=67.05 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.6
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-+++|+++.|.||+|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999999999998865
No 222
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.64 E-value=9.2e-05 Score=65.78 Aligned_cols=45 Identities=4% Similarity=-0.206 Sum_probs=31.1
Q ss_pred CCCCccccchhhhhhhhccCCcEEEEe-CCCCCCChHHHHHHHHHHH
Q 025256 207 PSFDHGVGDPVEDDILVGLQHKVVIVD-GNYLFLDGGVWKDVSSMFD 252 (255)
Q Consensus 207 ~~lS~G~~qrv~~a~~l~~~~~ililD-Ep~~~LD~~~~~~l~~ll~ 252 (255)
..++.++++.+. +.+...++-++++| ++..++|.....++.+.+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence 456777777665 44444567788999 8888888877666665554
No 223
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.63 E-value=3.5e-05 Score=64.30 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=28.4
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
-.+|.+++|+|++||||||++++|++.+.-.+.+.|.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~ 49 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 49 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC
Confidence 4678999999999999999999999865322234444
No 224
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.62 E-value=0.0001 Score=65.32 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.8
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-+++|+++.|.||+|+|||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999874
No 225
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.60 E-value=3.7e-05 Score=60.20 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998873
No 226
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.59 E-value=2.4e-05 Score=69.66 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=33.4
Q ss_pred EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
++++.+.|+... ...+|++++++++ .|+|+|++|||||||++.|.|.
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 456777776421 1226799999997 8999999999999999999993
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.57 E-value=7.5e-05 Score=63.65 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.4
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45667799999999999999999999873
No 228
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.55 E-value=3.6e-05 Score=60.81 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++|..++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999864
No 229
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.54 E-value=3.4e-05 Score=65.25 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=28.7
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+.. ....+.++.|+|++||||||+++.|+..+
T Consensus 24 ~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 24 RGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp TTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4444 56778999999999999999999999987
No 230
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.54 E-value=0.00014 Score=63.66 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=31.1
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456766668999999999999999999998888665
No 231
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.53 E-value=1.3e-05 Score=71.58 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=34.9
Q ss_pred eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+.+.++.+.|+... ++++++|.| +|+|++|+|||||++.|.+..
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 578889999997644 568888776 999999999999999998764
No 232
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=5.4e-05 Score=59.82 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999987
No 233
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.51 E-value=0.00074 Score=61.79 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999885
No 234
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.50 E-value=6.3e-05 Score=60.30 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-.+++|+|++|||||||++.|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 35899999999999999999999874
No 235
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.49 E-value=5.3e-05 Score=69.38 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+..+.|.||+|+|||||++.|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999873
No 236
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.48 E-value=4e-05 Score=66.64 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++.+++|+|++|+|||||++.|.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 345689999999999999999999874
No 237
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=6.3e-05 Score=63.34 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=24.8
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+.++++.+..| +.|.||+|+|||||++.|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 35555555555 88999999999999999999884
No 238
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.46 E-value=7.2e-05 Score=63.32 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+++|+||+|||||||.+.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999987
No 239
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.46 E-value=6.4e-05 Score=60.27 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=20.8
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 558888888776 6789999999999999999874
No 240
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.45 E-value=8.5e-05 Score=59.33 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..+.++.|.|++||||||+++.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999876
No 241
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.45 E-value=8.2e-05 Score=59.21 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
|.++.|.|++||||||+++.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 242
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.41 E-value=0.0001 Score=60.43 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
.+.+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999998
No 243
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.41 E-value=9.1e-05 Score=62.18 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+-+++|.||+||||||+++.|+..+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998763
No 244
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.40 E-value=8e-05 Score=58.93 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999873
No 245
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.40 E-value=0.00018 Score=63.72 Aligned_cols=37 Identities=27% Similarity=0.674 Sum_probs=30.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY 163 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~ 163 (255)
.+++|+||+|||||||.+.|+..+. +.++..|.+.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-------------------~~iis~Ds~qvY 44 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-------------------GEIISGDSMQVY 44 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-------------------EEEEECCSSTTB
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-------------------Cceecccccccc
Confidence 4899999999999999999999873 456788887444
No 246
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.39 E-value=9e-05 Score=58.84 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=24.8
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+..+.++.|+|++||||||+++.|+..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3467889999999999999999999776
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.39 E-value=0.0001 Score=59.35 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999763
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.39 E-value=8.7e-05 Score=57.86 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=18.7
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q 025256 108 HIVGLAGPPGAGKSTLAAEV 127 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L 127 (255)
.+++|.||+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 249
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.38 E-value=7.2e-05 Score=58.40 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 250
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.37 E-value=3.2e-05 Score=62.56 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.4
Q ss_pred eeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 85 k~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
..|++.. . +++++++..++.+ ++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~-~--~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFS-S--VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------C-H--HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-H--HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 4455532 2 5689999988875 68999999999999999875
No 251
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.35 E-value=0.00013 Score=58.12 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998773
No 252
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.34 E-value=0.00013 Score=58.76 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
+..+|+|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999875
No 253
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.33 E-value=0.00014 Score=58.69 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+|.+++|.|+.||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999875
No 254
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.33 E-value=0.00015 Score=58.62 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+|.+|+|.|+.||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999873
No 255
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.32 E-value=0.00014 Score=58.11 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=24.9
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..++.+++|.|+.||||||+.+.|+..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999999766
No 256
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.31 E-value=6.1e-05 Score=61.29 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999884
No 257
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.31 E-value=0.00014 Score=57.34 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHH
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~g 129 (255)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999997
No 258
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.30 E-value=0.00017 Score=57.51 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++.+|+|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998765
No 259
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.28 E-value=0.00034 Score=61.65 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998873
No 260
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.28 E-value=0.00016 Score=58.48 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++|.|++||||||+++.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999763
No 261
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.28 E-value=0.00016 Score=58.65 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+|.+++|.|+.||||||+++.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999876
No 262
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.26 E-value=0.00013 Score=71.69 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=28.5
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
|.+.+|+.++|.||||+|||||++.|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999999874
No 263
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.25 E-value=0.00014 Score=57.60 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gl 130 (255)
-.++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999985
No 264
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.25 E-value=0.00019 Score=58.33 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+|.+|+|.|+.||||||+++.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999876
No 265
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.24 E-value=0.00017 Score=62.20 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.4
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
....+.++.|+||+||||||+.+.|+..+
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999998766
No 266
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.24 E-value=0.0002 Score=57.13 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+++|+|++|||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999999874
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=9.4e-05 Score=59.36 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.0
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+..+.+++|.|+.||||||+++.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999999999876
No 268
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.23 E-value=0.00045 Score=60.42 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5689999999999999999999876
No 269
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.21 E-value=0.00017 Score=64.48 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.1
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
.+..+++.+ .+.+|+|||||||||++..|.=
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 555666666 4899999999999999999986
No 270
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.20 E-value=0.00014 Score=57.60 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999997763
No 271
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.20 E-value=0.0002 Score=62.04 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=27.6
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567889999999999999999999999873
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.19 E-value=0.00019 Score=58.18 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47799999999999999998765
No 273
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.18 E-value=0.00022 Score=56.71 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+|.|.|++||||||+++.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998773
No 274
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.16 E-value=0.00015 Score=57.67 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999864
No 275
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.15 E-value=0.00026 Score=56.63 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++|.|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 276
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.00029 Score=57.82 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+|.++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999876
No 277
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.10 E-value=0.00036 Score=56.37 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..+.+|+|.|+.||||||+++.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999876
No 278
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.09 E-value=0.00056 Score=60.41 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++.++.|+||.|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46799999999999999999999877
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.08 E-value=0.00039 Score=56.13 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
....+|+|.|+.||||||+++.|+..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998665
No 280
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.06 E-value=0.00066 Score=59.61 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999987
No 281
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.06 E-value=0.00028 Score=56.06 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|+|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998763
No 282
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.05 E-value=0.00041 Score=62.63 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.7
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
.+..+..++|+|+||+|||||++.|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567888999999999999999999987
No 283
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.05 E-value=0.00037 Score=55.35 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 284
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.05 E-value=0.00037 Score=56.82 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 285
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.04 E-value=0.0004 Score=54.33 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-++++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998773
No 286
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.04 E-value=0.00032 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+++|.|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999877
No 287
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.04 E-value=0.00034 Score=57.75 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++.+++|.|+.||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998765
No 288
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.04 E-value=0.00039 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 289
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.03 E-value=0.00031 Score=67.61 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.1
Q ss_pred ceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.+++++.++|+|++|+|||||++.|.+...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45678899999999999999999999998763
No 290
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.00 E-value=0.00089 Score=58.44 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..++.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999877
No 291
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.00 E-value=0.00047 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++|.|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 292
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.99 E-value=0.00037 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998763
No 293
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.97 E-value=0.00045 Score=56.39 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.97 E-value=0.00059 Score=57.21 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++.+++|.||+||||||+++.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
No 295
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.96 E-value=0.00035 Score=58.09 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-.|+|+|++|+|||||++.|.|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3589999999999999999998763
No 296
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.93 E-value=0.00066 Score=56.25 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=26.8
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-...+..++.|+||.||||+|.++.|+-.+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3456788999999999999999999998763
No 297
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.93 E-value=0.00054 Score=57.97 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
++.+|.|.|++||||||+++.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 298
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.92 E-value=0.00049 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-.+++|+|+.||||||+.+.|+..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999876
No 299
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.87 E-value=0.00043 Score=58.85 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|++|||||||++.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999975
No 300
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.87 E-value=0.0012 Score=59.53 Aligned_cols=25 Identities=32% Similarity=0.674 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..+++|+||+|||||||...|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999887
No 301
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.86 E-value=0.00061 Score=58.48 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
...+|+|+|++||||||+++.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999994
No 302
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.83 E-value=0.00051 Score=62.68 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+||+|||||++.|.|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999975
No 303
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.81 E-value=0.00077 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++|.|++||||||+++.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 304
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.80 E-value=0.00088 Score=54.82 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998874
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.00079 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-.++|+|+.|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999865
No 306
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.75 E-value=0.00083 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998854
No 307
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.00055 Score=56.87 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=24.0
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
-.+.+|+.++|.||+||||||++..+...
T Consensus 71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 71 EAISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 34567999999999999999988876543
No 308
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.75 E-value=0.00082 Score=55.09 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+|.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998866
No 309
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.73 E-value=0.00088 Score=59.99 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (255)
.+.-++|+||+|||||||++.|..... +..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~ 65 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSR 65 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCE
Confidence 466789999999999999999999875 44444
No 310
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.72 E-value=0.00077 Score=59.22 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999884
No 311
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.72 E-value=0.00091 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998864
No 312
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.71 E-value=0.00095 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988754
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.69 E-value=0.00087 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 314
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.69 E-value=0.00098 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999998754
No 315
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.69 E-value=0.0013 Score=54.59 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+.++.|+|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998763
No 316
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.67 E-value=0.00095 Score=54.45 Aligned_cols=25 Identities=40% Similarity=0.607 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999876
No 317
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.66 E-value=0.001 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|.|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 318
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.66 E-value=0.0011 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998864
No 319
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.66 E-value=0.0014 Score=54.10 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|.++.|.|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999998874
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.65 E-value=0.0011 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 321
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.65 E-value=0.0011 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998854
No 322
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.64 E-value=0.0011 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 323
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.64 E-value=0.0013 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999884
No 324
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.64 E-value=0.0011 Score=56.90 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gl 130 (255)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 325
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.64 E-value=0.0015 Score=51.07 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998873
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.63 E-value=0.0011 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 327
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.63 E-value=0.022 Score=51.88 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+..+++++|++|+||||+.-.|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998884
No 328
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.63 E-value=0.0012 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999998753
No 329
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.62 E-value=0.0012 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 330
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.62 E-value=0.001 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 331
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.00098 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gl 130 (255)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 332
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.61 E-value=0.0029 Score=57.71 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=30.7
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445555558899999999999999999999988876
No 333
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.60 E-value=0.00092 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 334
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.58 E-value=0.0014 Score=55.01 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999998874
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.58 E-value=0.0011 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998863
No 336
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.58 E-value=0.00098 Score=57.00 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
No 337
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.00085 Score=58.55 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=26.3
Q ss_pred cccceecCCC--eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 98 SALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~vsl~i~~G--eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+.+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3333334444 3389999999999999999999873
No 338
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.57 E-value=0.0011 Score=55.18 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|.+|.|.|+.||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999998874
No 339
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.55 E-value=0.00064 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+.|.||+|+|||||++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3889999999999999999998874
No 340
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.55 E-value=0.0014 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 341
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.54 E-value=0.0014 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998754
No 342
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.54 E-value=0.0014 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 343
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.54 E-value=0.0069 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.7
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHI-VGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Gei-v~LiGpNGsGKSTLlk~L~gll 131 (255)
+|++ +.+.|+.|+||||++-.++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5665 7788999999999966666665
No 344
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.53 E-value=0.0014 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.|.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999999864
No 345
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.53 E-value=0.0011 Score=51.23 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997643
No 346
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.52 E-value=0.0014 Score=51.48 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 347
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0016 Score=54.12 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+|.+++|.|+.||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999887
No 348
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.50 E-value=0.0014 Score=59.44 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=25.2
Q ss_pred eecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.-....++.|+|++||||||+++.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999988655
No 349
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.50 E-value=0.0016 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 350
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.49 E-value=0.0019 Score=56.50 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.0
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
.+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 567777777 688999999999999999998887
No 351
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.49 E-value=0.00077 Score=51.87 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999987644
No 352
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.48 E-value=0.0018 Score=53.35 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+|.+|.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998884
No 353
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.48 E-value=0.0016 Score=50.91 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.|+|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 358999999999999999998754
No 354
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.47 E-value=0.0022 Score=53.30 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|.+|.|.|+.||||||+++.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998874
No 355
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.47 E-value=0.0022 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997743
No 356
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.47 E-value=0.0011 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
.-.++|+|+.|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999875
No 357
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.47 E-value=0.0015 Score=53.36 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=27.3
Q ss_pred cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++..-+.+ .|..+.|+||+|+|||||+..|+...
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 345555555 47889999999999999998887654
No 358
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.46 E-value=0.0019 Score=53.00 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.|+||.||||+|.++.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997763
No 359
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.46 E-value=0.0017 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 360
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.46 E-value=0.0017 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|++|+|||||++.+.+-.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999998777643
No 361
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.45 E-value=0.0017 Score=51.31 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998763
No 362
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.45 E-value=0.0015 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 363
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.45 E-value=0.0017 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 364
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0017 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 365
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.45 E-value=0.00091 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998865
No 366
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.44 E-value=0.00081 Score=66.11 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.6
Q ss_pred cceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 100 vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.++.+.+++.++|.||+|+|||||++.|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356678899999999999999999999999984
No 367
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.001 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999987643
No 368
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.43 E-value=0.0051 Score=60.76 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=23.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+.|.||+|+|||++++.|+..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999983
No 369
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.43 E-value=0.0013 Score=51.90 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 368999999999999999998764
No 370
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.43 E-value=0.0016 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 371
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.42 E-value=0.0019 Score=50.40 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 372
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.42 E-value=0.0021 Score=53.10 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|.++.|-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999999984
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.41 E-value=0.0018 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999865
No 374
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.40 E-value=0.0019 Score=50.46 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999998874
No 375
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.39 E-value=0.0015 Score=54.83 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.|+|+|.+|+|||||++.|.|.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999999999999999865
No 376
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.39 E-value=0.0012 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 377
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.39 E-value=0.0019 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.|+|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 378
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.38 E-value=0.0017 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 379
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.38 E-value=0.002 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998864
No 380
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.37 E-value=0.0017 Score=56.38 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+..+.|.||+|+|||||++.|+..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356789999999999999999999883
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.002 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-..++|+|+.|+|||||++.|++.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 382
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.36 E-value=0.002 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998864
No 383
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.36 E-value=0.0018 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
No 384
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.35 E-value=0.0027 Score=52.92 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
....-+.|.||+|+|||||++.++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455688999999999999999999873
No 385
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.35 E-value=0.0021 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.34 E-value=0.0021 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 357999999999999999998753
No 387
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.33 E-value=0.0022 Score=50.13 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.002 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 389
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.002 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Confidence 358999999999999999998843
No 390
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.32 E-value=0.00099 Score=56.10 Aligned_cols=33 Identities=36% Similarity=0.586 Sum_probs=25.8
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+..+....| +.|.||+|+|||||++.|+....
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 3444444555 77999999999999999999874
No 391
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.32 E-value=0.002 Score=57.59 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999974
No 392
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.30 E-value=0.0019 Score=55.99 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999863
No 393
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.29 E-value=0.0019 Score=56.02 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-+|+|+|+.|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999864
No 394
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.29 E-value=0.0023 Score=51.13 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|++|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999853
No 395
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.28 E-value=0.0024 Score=50.46 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 396
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.27 E-value=0.0025 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.26 E-value=0.0012 Score=55.64 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++.+|+|.|+.||||||+++.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998776
No 398
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.25 E-value=0.0022 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4468999999999999999999864
No 399
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.25 E-value=0.0023 Score=50.80 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57999999999999999999865
No 400
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.25 E-value=0.0023 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gl 130 (255)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999854
No 401
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.25 E-value=0.0027 Score=56.64 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
|..++|+|.+|+|||||++.|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999984
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0027 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458999999999999999998853
No 403
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0023 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999988754
No 404
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.23 E-value=0.0026 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998754
No 405
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.21 E-value=0.0024 Score=55.52 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.5
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
-+++|+++.|.||+|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999988875
No 406
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.21 E-value=0.0027 Score=50.37 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998864
No 407
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.21 E-value=0.0021 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|..|+|||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999874
No 408
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0028 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998764
No 409
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.002 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
++.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999998874
No 410
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.20 E-value=0.0028 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998754
No 411
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.19 E-value=0.0025 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 412
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0025 Score=51.31 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=24.4
Q ss_pred cccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++.|.-..--.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4444444444578999999999999999998854
No 413
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.17 E-value=0.0023 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.|+|+|+.|+|||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 414
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.17 E-value=0.0022 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998854
No 415
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.17 E-value=0.0029 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..-.|+|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568999999999999999998754
No 416
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.16 E-value=0.0024 Score=51.01 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 417
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.15 E-value=0.0031 Score=58.02 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=29.1
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 3443 5666899999999999999999999988764
No 418
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.14 E-value=0.0032 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 358999999999999999988754
No 419
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.13 E-value=0.0031 Score=51.95 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.6
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHH
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVV 128 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~ 128 (255)
+++|+++.|.|++|+|||||+-.++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999987654
No 420
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.12 E-value=0.004 Score=48.50 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998753
No 421
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.12 E-value=0.0029 Score=51.26 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999864
No 422
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.11 E-value=0.0028 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|++|+|||||++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 423
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.11 E-value=0.0016 Score=52.19 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999987643
No 424
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.09 E-value=0.0044 Score=50.62 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
|.+|+|=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999998874
No 425
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0026 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999854
No 426
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.07 E-value=0.0023 Score=58.37 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+++|+|++|+||||++..|++.+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999999999884
No 427
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.06 E-value=0.0037 Score=49.94 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=24.9
Q ss_pred ccccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
++..-+.+ .|.-+.|.|+||+|||||+..|..
T Consensus 7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444454 488899999999999999887765
No 428
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.05 E-value=0.0039 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
No 429
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.04 E-value=0.0024 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999987643
No 430
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.03 E-value=0.0033 Score=49.42 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999988643
No 431
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.02 E-value=0.0037 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+-..++|+|..|+|||||++.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998875
No 432
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.02 E-value=0.002 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|.+|+|||||++.|.+.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
No 433
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.02 E-value=0.0024 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 434
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.99 E-value=0.0036 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999854
No 435
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.98 E-value=0.0032 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|..|+|||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 436
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.98 E-value=0.0016 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-.++|+|+.|+|||||++.|.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998763
No 437
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.97 E-value=0.0023 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999987643
No 438
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0039 Score=49.41 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998763
No 439
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.96 E-value=0.0032 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.|+|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999988643
No 440
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.95 E-value=0.0032 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999863
No 441
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.95 E-value=0.0049 Score=53.04 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=24.4
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++....+.|.||+|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456788889999999999999999874
No 442
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.95 E-value=0.0044 Score=55.06 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.8
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999999888766
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.94 E-value=0.0023 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999988653
No 444
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.94 E-value=0.0031 Score=51.68 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999988753
No 445
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.92 E-value=0.0053 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
+|.++.+.||.|+||||++..++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997444433
No 446
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.92 E-value=0.0019 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
No 447
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.92 E-value=0.0026 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.-.|+|+|+.|+|||||++.+.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999987754
No 448
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.92 E-value=0.0016 Score=59.63 Aligned_cols=31 Identities=42% Similarity=0.652 Sum_probs=25.2
Q ss_pred eecCCCe--EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 102 SNVNVKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 102 l~i~~Ge--iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-.+..|. .+.|.||+|+|||||++.|+....
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344455 488999999999999999999874
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.91 E-value=0.0052 Score=52.59 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+.-+.|.||+|+|||||++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999998874
No 450
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.90 E-value=0.0035 Score=50.00 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998864
No 451
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.87 E-value=0.0063 Score=53.80 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
....+++|+|+.|+|||||+..|++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999887
No 452
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.87 E-value=0.0052 Score=46.94 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..+.-+.|.||+|+|||++++.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 445668999999999999999999876
No 453
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.87 E-value=0.0052 Score=51.26 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-.+||+|+.||||||+.+.|+..+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988763
No 454
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.86 E-value=0.0033 Score=51.00 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gl 130 (255)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 455
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.86 E-value=0.0045 Score=49.67 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998753
No 456
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.85 E-value=0.0053 Score=49.07 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999876
No 457
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0052 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 458
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.82 E-value=0.0063 Score=53.09 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+..-+.|.||.|+|||||++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455778999999999999999999987
No 459
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.82 E-value=0.0036 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 358899999999999999888754
No 460
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.76 E-value=0.0051 Score=49.48 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
.-.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998864
No 461
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.74 E-value=0.0058 Score=49.65 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998753
No 462
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.71 E-value=0.0062 Score=50.00 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.4
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+++...+.|.||.|+||||++..|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55556799999999999999999999883
No 463
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.70 E-value=0.0074 Score=57.00 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.|.+|.|.|++||||||+.+.|+..+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999887
No 464
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0052 Score=50.31 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gl 130 (255)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 465
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.68 E-value=0.0045 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999864
No 466
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.67 E-value=0.0065 Score=56.55 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.3
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999994
No 467
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.66 E-value=0.0058 Score=49.13 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 468
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.66 E-value=0.0023 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gl 130 (255)
-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998876
No 469
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.65 E-value=0.0053 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++|+|..|+|||||++.|.|..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 470
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.62 E-value=0.0066 Score=53.59 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 355688999999999999999999873
No 471
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.62 E-value=0.0054 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.++++|+.|+|||||++.|.+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.61 E-value=0.0073 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+.-+.|.||+|+||||+++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999884
No 473
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.61 E-value=0.028 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+.|.||+|+|||++++.|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 474
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.60 E-value=0.0081 Score=57.26 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+|.+|.|.|.+||||||+++.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999887
No 475
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.58 E-value=0.0057 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
..++|+|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 578999999999999999999865
No 476
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.56 E-value=0.0075 Score=52.93 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999983
No 477
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.56 E-value=0.0087 Score=50.47 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
....-+.|.||+|+|||||++.++....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456788999999999999999999863
No 478
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.53 E-value=0.0081 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998864
No 479
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.50 E-value=0.0097 Score=52.57 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
....-+.|.||+|+|||||++.|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4566799999999999999999998873
No 480
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.49 E-value=0.0023 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gl 130 (255)
.++|+|+.|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988754
No 481
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.46 E-value=0.01 Score=51.51 Aligned_cols=28 Identities=43% Similarity=0.557 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+..-+.|.||+|+|||+|++.++....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3456689999999999999999998874
No 482
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.44 E-value=0.0097 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.43 E-value=0.0076 Score=52.85 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl 130 (255)
-+.+|.++.|.||.|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4667888999999999999999998765
No 484
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.36 E-value=0.0049 Score=56.42 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll 131 (255)
-.|+|+|++|+|||||++.|.|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999998753
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.35 E-value=0.0053 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~g 129 (255)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345689999999999999998854
No 486
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.011 Score=53.75 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=25.1
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+.+..=+.|.||+|+|||+|++.|++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45555688999999999999999999884
No 487
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.32 E-value=0.011 Score=48.05 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.-+|+|.|+.||||||+.+.|+..+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999884
No 488
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.011 Score=53.88 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=25.7
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+.+..=+.|.||+|+|||+|++.|++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 355566688999999999999999999874
No 489
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.30 E-value=0.013 Score=54.71 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
...+|.++|.+||||||+.+.|+..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998776
No 490
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.011 Score=53.80 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=25.8
Q ss_pred ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-+.+..=+.|-||+|+|||+|++.|++...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 355566788999999999999999999884
No 491
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.28 E-value=0.053 Score=57.90 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.8
Q ss_pred cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 104 i~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+++|+.+.|.||+|+|||||+..++...
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999887765
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.27 E-value=0.013 Score=50.91 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.-+.|.||.|+|||+|++.|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 493
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.25 E-value=0.013 Score=54.40 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
.+..+|+|+|++|+||||++..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998774
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.22 E-value=0.011 Score=52.16 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
+..-+.|.||.|+|||||++.|+..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 445588999999999999999999874
No 495
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.20 E-value=0.011 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025256 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
-+.|.||+|+||||+++.|+..+.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999984
No 496
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.20 E-value=0.014 Score=53.59 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 106 ~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
...+|.++|.+||||||+.+.|+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999765
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.19 E-value=0.011 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 108 eiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
..+.|.||+|+|||||++.|+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998874
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.16 E-value=0.012 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (255)
Q Consensus 107 Geiv~LiGpNGsGKSTLlk~L~gll~ 132 (255)
...+.|.||+|+||||+++.|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999873
No 499
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.14 E-value=0.014 Score=54.80 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (255)
Q Consensus 105 ~~Geiv~LiGpNGsGKSTLlk~L~gll 131 (255)
+.+.++.|.|++||||||+.+.|+..+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999999876
No 500
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.12 E-value=0.0078 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHH-HHHhh
Q 025256 109 IVGLAGPPGAGKSTLAAE-VVRRI 131 (255)
Q Consensus 109 iv~LiGpNGsGKSTLlk~-L~gll 131 (255)
.++|+|+.|+|||||++. +.+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999998 66654
Done!