BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025257
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From
Tomato (solanum Lycopersicum) In Complex With Nad+
pdb|4DL9|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase From
Tomato (solanum Lycopersicum) In Complex With Nad+
pdb|4DLA|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase
Apoenzyme From Tomato (solanum Lycopersicum)
pdb|4DLA|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase
Apoenzyme From Tomato (solanum Lycopersicum)
pdb|4DLB|A Chain A, Structure Of S-nitrosoglutathione Reductase From Tomato
(solanum Lycopersicum) Crystallized In Presence Of Nadh
And Glutathione
pdb|4DLB|B Chain B, Structure Of S-nitrosoglutathione Reductase From Tomato
(solanum Lycopersicum) Crystallized In Presence Of Nadh
And Glutathione
Length = 396
Score = 456 bits (1172), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/253 (86%), Positives = 231/253 (91%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPTGLG
Sbjct: 142 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPTGLG 201
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVEPGSIVAVFGLGTV SR+IGIDID KKFDRAKNFGVTEF+
Sbjct: 202 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTEFI 261
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPK+H++PIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAASGQEI
Sbjct: 262 NPKEHEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEI 321
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSRSQVP LVDKY+KKEIKVDEY+THNMTL +IN+AF
Sbjct: 322 STRPFQLVTGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADINKAFDL 381
Query: 241 MHGGDCLRCVLKM 253
MH GDCLR VL M
Sbjct: 382 MHDGDCLRVVLDM 394
>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|3UKO|B Chain B, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|4GL4|A Chain A, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
pdb|4GL4|B Chain B, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
Length = 378
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 214/251 (85%), Positives = 227/251 (90%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVPTGLG
Sbjct: 124 MMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLG 183
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
AVWNTAKVEPGS VA+FGLGTV SR+IGIDID KK++ AK FGV EFV
Sbjct: 184 AVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFV 243
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKDHDKPIQ+V+VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI
Sbjct: 244 NPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
STRPFQLVTGRVWKGTAFGGFKSR+QVPWLV+KYM KEIKVDEY+THN+TLGEIN+AF
Sbjct: 304 STRPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDL 363
Query: 241 MHGGDCLRCVL 251
+H G CLRCVL
Sbjct: 364 LHEGTCLRCVL 374
>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione- Dependent Formaldehyde Dehydrogenase)
pdb|1TEH|B Chain B, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione- Dependent Formaldehyde Dehydrogenase)
pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6H|B Chain B, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6W|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1M6W|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1MA0|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MA0|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MP0|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|1MP0|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|2FZE|A Chain A, Crystal Structure Of The Binary Complex Of Human
Glutathione-Dependent Formaldehyde Dehydrogenase With
Adp- Ribose
pdb|2FZE|B Chain B, Crystal Structure Of The Binary Complex Of Human
Glutathione-Dependent Formaldehyde Dehydrogenase With
Adp- Ribose
Length = 373
Score = 332 bits (852), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/253 (66%), Positives = 199/253 (78%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAK+EPGS+ AVFGLG V SR+IG+DI+ KF RAK FG TE +
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 240
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 241 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 300
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTHN++ EIN+AF
Sbjct: 301 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 360
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 361 MHSGKSIRTVVKI 373
>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With
N6022
pdb|3QJ5|B Chain B, S-Nitrosoglutathione Reductase (Gsnor) In Complex With
N6022
Length = 374
Score = 332 bits (852), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/253 (66%), Positives = 199/253 (78%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAK+EPGS+ AVFGLG V SR+IG+DI+ KF RAK FG TE +
Sbjct: 182 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 242 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTHN++ EIN+AF
Sbjct: 302 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 361
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 362 MHSGKSIRTVVKI 374
>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of
Human Glutathione-Dependent Formaldehyde Dehydrogenase
With Nad(H)
pdb|2FZW|B Chain B, Structure Of The Binary Complex Of The E67l Mutant Of
Human Glutathione-Dependent Formaldehyde Dehydrogenase
With Nad(H)
Length = 373
Score = 332 bits (852), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/253 (66%), Positives = 199/253 (78%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAK+EPGS+ AVFGLG V SR+IG+DI+ KF RAK FG TE +
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 240
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 241 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 300
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTHN++ EIN+AF
Sbjct: 301 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 360
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 361 MHSGKSIRTVVKI 373
>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With
S-(Hydroxymethyl)glutathione And Nadh
pdb|1MC5|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With
S-(Hydroxymethyl)glutathione And Nadh
Length = 374
Score = 332 bits (852), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/253 (66%), Positives = 199/253 (78%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAK+EPGS+ AVFGLG V SR+IG+DI+ KF RAK FG TE +
Sbjct: 182 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 242 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTHN++ EIN+AF
Sbjct: 302 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 361
Query: 241 MHGGDCLRCVLKM 253
MH G +R V+K+
Sbjct: 362 MHSGKSIRTVVKI 374
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed
With Nicotinamide Adenine Dinucleotide (Nad), And Zinc
Length = 374
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 179/253 (70%), Gaps = 1/253 (0%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M+ +++RF+ G+ + F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV TG G
Sbjct: 123 VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFG 182
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKVEPGS AVFGLG V R+I +D++P KF++AK FG T+FV
Sbjct: 183 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFV 242
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP DH +PI QVL +T+GGVD+S EC+GNV VMR ALE C KGWG SV+VG ++
Sbjct: 243 NPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVG-WTDLHDV 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+TRP QL+ GR WKG+ FGGFK + VP +V Y+ K++K+DE++TH M L +N+A
Sbjct: 302 ATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDL 361
Query: 241 MHGGDCLRCVLKM 253
M G C+R VL +
Sbjct: 362 MKHGKCIRTVLSL 374
>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDX|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|3HUD|A Chain A, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|3HUD|B Chain B, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|1DEH|A Chain A, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1DEH|B Chain B, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1HSZ|A Chain A, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1HSZ|B Chain B, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1U3U|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3U|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3V|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
pdb|1U3V|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
Length = 374
Score = 271 bits (692), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 128/250 (51%), Positives = 167/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
+ D RF+ GKPI+HF+GTSTFSQYTVV + +VAKID +PL+KVCL+GCG TG G+
Sbjct: 123 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
N AKV PGS AVFGLG V +R+I +DI+ KF +AK G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++TDGGVD+SFE IG + M A+L CCH+ GTSVIVGV + Q +S
Sbjct: 243 PQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L+TGR WKG +GGFKS+ +P LV +M K+ +D +TH + +INE F +
Sbjct: 303 INPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
H G +R VL
Sbjct: 363 HSGKSIRTVL 372
>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDY|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 128/250 (51%), Positives = 167/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
+ D RF+ GKPI+HF+GTSTFSQYTVV + +VAKID +PL+KVCL+GCG TG G+
Sbjct: 123 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
N AKV PGS AVFGLG V +R+I +DI+ KF +AK G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++TDGGVD+SFE IG + M A+L CCH+ GTSVIVGV + Q +S
Sbjct: 243 PQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L+TGR WKG +GGFKS+ +P LV +M K+ +D +TH + +INE F +
Sbjct: 303 INPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
H G +R VL
Sbjct: 363 HSGKSIRTVL 372
>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDZ|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 128/250 (51%), Positives = 167/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
+ D RF+ GKPI+HF+GTSTFSQYTVV + +VAKID +PL+KVCL+GCG TG G+
Sbjct: 123 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
N AKV PGS AVFGLG V +R+I +DI+ KF +AK G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++TDGGVD+SFE IG + M A+L CCH+ GTSVIVGV + Q +S
Sbjct: 243 PQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L+TGR WKG +GGFKS+ +P LV +M K+ +D +TH + +INE F +
Sbjct: 303 INPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
H G +R VL
Sbjct: 363 HSGKSIRTVL 372
>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
pdb|1HTB|B Chain B, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10
MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+
And 1 Mm 4-Iodopyrazole At 25 C
Length = 374
Score = 267 bits (683), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 127/250 (50%), Positives = 166/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
+ D RF+ GKPI+HF+GTSTFSQYTVV + +VAKID +PL+KVCL+GCG TG G+
Sbjct: 123 LQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
N AKV PGS AVFGLG V +R+I +DI+ KF +AK G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++TDGGVD+SFE IG + M A+L CCH+ GTSVIVGV + Q +S
Sbjct: 243 PQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L+TGR WKG +GGFKS+ +P LV +M K+ +D +TH + +INE F +
Sbjct: 303 INPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
H G + VL
Sbjct: 363 HSGKSICTVL 372
>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1HSO|B Chain B, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1U3T|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
pdb|1U3T|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
Length = 374
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 127/250 (50%), Positives = 164/250 (65%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
+ D SRF+ KPI+HF+G STFSQYTVV + +VAKID +PL+KVCL+GCG TG G+
Sbjct: 123 LQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
N AKV PGS AVFGLG V +R+I +DI+ KF +AK G TE +N
Sbjct: 183 AVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++TDGGVD+SFE IG + M A+L CCH+ GTSVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L+TGR WKG GGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
H G +R +L
Sbjct: 363 HSGKSIRTIL 372
>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At
1.54 A Resolution
Length = 373
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/250 (50%), Positives = 165/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 122 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGS 181
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 182 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 241
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AAL CC + +G SVIVGV Q +S
Sbjct: 242 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQNLS 301
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 302 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 361
Query: 242 HGGDCLRCVL 251
G +R +L
Sbjct: 362 RSGKSIRTIL 371
>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At
1.54 A Resolution
Length = 373
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/250 (50%), Positives = 165/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 122 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGS 181
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 182 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 241
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AAL CC + +G SVIVGV Q +S
Sbjct: 242 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQNLS 301
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 302 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 361
Query: 242 HGGDCLRCVL 251
G +R +L
Sbjct: 362 RSGKSIRTIL 371
>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant
pdb|1MGO|B Chain B, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant
Length = 374
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/250 (50%), Positives = 165/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver
Alcohol Dehydrogenase At 2.9 Angstroms Resolution
pdb|6ADH|B Chain B, Structure Of Triclinic Ternary Complex Of Horse Liver
Alcohol Dehydrogenase At 2.9 Angstroms Resolution
pdb|2OHX|A Chain A, Refined Crystal Structure Of Liver Alcohol Dehydrogenase-
Nadh Complex At 1.8 Angstroms Resolution
pdb|2OHX|B Chain B, Refined Crystal Structure Of Liver Alcohol Dehydrogenase-
Nadh Complex At 1.8 Angstroms Resolution
pdb|2OXI|A Chain A, Refined Crystal Structure Of Cu-Substituted Alcohol
Dehydrogenase At 2.1 Angstroms Resolution
pdb|2OXI|B Chain B, Refined Crystal Structure Of Cu-Substituted Alcohol
Dehydrogenase At 2.1 Angstroms Resolution
pdb|1HLD|A Chain A, Structures Of Horse Liver Alcohol Dehydrogenase Complexed
With Nad+ And Substituted Benzyl Alcohols
pdb|1HLD|B Chain B, Structures Of Horse Liver Alcohol Dehydrogenase Complexed
With Nad+ And Substituted Benzyl Alcohols
pdb|1ADB|A Chain A, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADB|B Chain B, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADC|A Chain A, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADC|B Chain B, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|3BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|1LDY|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDE|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1HET|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HET|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HEU|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HEU|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1MG0|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1N92|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
4- Iodopyrazole
pdb|1N92|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
4- Iodopyrazole
pdb|1P1R|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1YE3|A Chain A, Horse Liver Alcohol Dehydrogenase Apoenzyme
pdb|2JHF|A Chain A, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHF|B Chain B, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHG|A Chain A, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHG|B Chain B, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|1ADF|A Chain A, Crystallographic Studies Of Two Alcohol
Dehydrogenase-Bound Analogs Of Thiazole-4-Carboxamide
Adenine Dinucleotide (Tad), The Active Anabolite Of The
Antitumor Agent Tiazofurin
pdb|1ADG|A Chain A, Crystallographic Studies Of Two Alcohol
Dehydrogenase-Bound Analogs Of Thiazole-4-Carboxamide
Adenine Dinucleotide (Tad), The Active Anabolite Of The
Antitumor Agent Tiazofurin
pdb|5ADH|A Chain A, Interdomain Motion In Liver Alcohol Dehydrogenase.
Structural And Energetic Analysis Of The Hinge Bending
Mode
pdb|7ADH|A Chain A, Three-Dimensional Structure Of Isonicotinimidylated Liver
Alcohol Dehydrogenase
pdb|8ADH|A Chain A, Interdomain Motion In Liver Alcohol Dehydrogenase.
Structural And Energetic Analysis Of The Hinge Bending
Mode
pdb|4DWV|A Chain A, Horse Alcohol Dehydrogenase Complexed With Nad+ And
2,3,4,5,6- Pentafluorobenzyl Alcohol
pdb|4DWV|B Chain B, Horse Alcohol Dehydrogenase Complexed With Nad+ And
2,3,4,5,6- Pentafluorobenzyl Alcohol
pdb|4DXH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2,2,2- Trifluoroethanol
pdb|4DXH|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2,2,2- Trifluoroethanol
Length = 374
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/250 (50%), Positives = 165/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed
With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol
pdb|3OQ6|B Chain B, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed
With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol
Length = 374
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 126/250 (50%), Positives = 165/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGCIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
pdb|1AXE|B Chain B, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
Length = 374
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 126/250 (50%), Positives = 165/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol
pdb|1QV6|B Chain B, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol
pdb|1QV7|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,3-Difluorobenzyl Alcohol
pdb|1QV7|B Chain B, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT
Complexed With Nad+ And 2,3-Difluorobenzyl Alcohol
Length = 374
Score = 264 bits (674), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 165/250 (66%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ +F +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|B Chain B, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|C Chain C, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|D Chain D, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
Length = 374
Score = 263 bits (672), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double
Mutant Of Gly 293 Ala And Pro 295 Thr
pdb|1QLJ|A Chain A, Horse Liver Alcohol Dehydrogenase Apo Enzyme Double Mutant
Of Gly 293 Ala And Pro 295 Thr
Length = 374
Score = 263 bits (672), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIV V Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVAVTPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant
Complexed To Nad+ And Pyrazole
pdb|1N8K|B Chain B, Horse Liver Alcohol Dehydrogenase Val292thr Mutant
Complexed To Nad+ And Pyrazole
Length = 374
Score = 263 bits (672), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVI GV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVITGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A71|B Chain B, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A72|A Chain A, An Active-Site Double Mutant (Phe93->trp, Val203->ala) Of
Horse Liver Alcohol Dehydrogenase In Complex With The
Isosteric Nad Analog Cpad
Length = 374
Score = 263 bits (672), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
pdb|1JU9|B Chain B, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
Length = 374
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 164/250 (65%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG TG G+
Sbjct: 123 MQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV GS AVFGLG V +R+IG+DI+ KF +AK G TE VN
Sbjct: 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVI GV Q +S
Sbjct: 243 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVISGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE F +
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G+ +R +L
Sbjct: 363 RSGESIRTIL 372
>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense
pdb|1HT0|B Chain B, Human Gamma-2 Alcohol Dehydrogense
pdb|1U3W|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Gamma-2-
Gamma-2 Isoform Complexed With N-1-Methylheptylformamide
Determined To 1.45 Angstrom Resolution
pdb|1U3W|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Gamma-2-
Gamma-2 Isoform Complexed With N-1-Methylheptylformamide
Determined To 1.45 Angstrom Resolution
Length = 374
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/250 (50%), Positives = 164/250 (65%)
Query: 2 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 61
+ D RF+ +GKPI+HF+G STFSQYTVV + +VAKID +PL+KVCL+GCG TG G+
Sbjct: 123 LQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGS 182
Query: 62 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 121
AKV PGS AVFGLG V +R+I +DI+ KF +AK G TE +N
Sbjct: 183 AVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECIN 242
Query: 122 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 181
P+D+ KPIQ+VL ++TDGGVD+SFE IG + M A+L CCH+ GTSVIVGV Q +S
Sbjct: 243 PQDYKKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDSQNLS 302
Query: 182 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 241
P L+TGR WKG FGGFKS+ VP LV +M K+ +D +T+ + +INE F +
Sbjct: 303 INPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNVLPFEKINEGFDLL 362
Query: 242 HGGDCLRCVL 251
G +R VL
Sbjct: 363 RSGKSIRTVL 372
>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|B Chain B, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|C Chain C, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|D Chain D, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
Length = 381
Score = 257 bits (657), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 123/251 (49%), Positives = 165/251 (65%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D+ SRF+ GKP+YHF GTSTFSQYTVV D+++AKID A L++VCLLGCG TG G
Sbjct: 129 LMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYG 188
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A N AKV PGS AVFGLG V SR+IGIDI+ +KF +AK G T+ +
Sbjct: 189 AAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCL 248
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP+D KPIQ+V+++LT GGVD++ +C G M+AAL+C GWG+ +GVAA + +
Sbjct: 249 NPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGL 308
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+ P +L+ GR GT FGG+KS +P LV Y K+ +D VTH + +I+EAF
Sbjct: 309 TVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDL 368
Query: 241 MHGGDCLRCVL 251
M+ G +R +L
Sbjct: 369 MNQGKSIRTIL 379
>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|B Chain B, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|C Chain C, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|D Chain D, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1D1S|A Chain A, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|B Chain B, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|C Chain C, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|D Chain D, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
Length = 373
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/251 (46%), Positives = 160/251 (63%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
++ D +RF+ GKP++HFM TSTF++YTVV + SVAKID AP +KVCL+GCG TG G
Sbjct: 121 VLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYG 180
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A T KV+PGS VFGLG V SR+IGID++ KF++A G TE +
Sbjct: 181 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECI 240
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
+PKD KPI +VL ++T V Y+FE IG++ M AL CH +GTSV+VGV S + +
Sbjct: 241 SPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKML 300
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+ P L TGR WKG FGG KSR VP LV +++ K+ +D+ +TH + +I+E F
Sbjct: 301 TYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFEL 360
Query: 241 MHGGDCLRCVL 251
++ G +R VL
Sbjct: 361 LNSGQSIRTVL 371
>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|B Chain B, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|C Chain C, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|D Chain D, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
Length = 373
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 160/251 (63%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
++ D +RF+ GKP++HF+ TSTF++YTVV + SVAKID AP +KVCL+GCG TG G
Sbjct: 121 VLADGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYG 180
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A T KV+PGS VFGLG V SR+IGID++ KF++A G TE +
Sbjct: 181 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECI 240
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
+PKD KPI +VL ++T V Y+FE IG++ M AL CH +GTSV+VGV S + +
Sbjct: 241 SPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKML 300
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+ P L TGR WKG FGG KSR VP LV +++ K+ +D+ +TH + +I+E F
Sbjct: 301 TYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFEL 360
Query: 241 MHGGDCLRCVL 251
++ G +R VL
Sbjct: 361 LNSGQSIRTVL 371
>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate
Alcohol Dehydrogenase (Adh8)
pdb|1P0C|B Chain B, Crystal Structure Of The Nadp(H)-Dependent Vertebrate
Alcohol Dehydrogenase (Adh8)
pdb|1P0F|A Chain A, Crystal Structure Of The Binary Complex: Nadp(H)-Dependent
Vertebrate Alcohol Dehydrogenase (Adh8) With The
Cofactor Nadp
pdb|1P0F|B Chain B, Crystal Structure Of The Binary Complex: Nadp(H)-Dependent
Vertebrate Alcohol Dehydrogenase (Adh8) With The
Cofactor Nadp
Length = 373
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 164/251 (65%), Gaps = 2/251 (0%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M D SRF+ GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+ CL+GCG TG G
Sbjct: 123 LMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFATGYG 181
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKV PGS AVFGLG V SR+IG+ KF +A G TE +
Sbjct: 182 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL 241
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NPKD+DKPI +V+ + T+GGVDY+ EC G + M AL+ + G G +V++G+A+ + +
Sbjct: 242 NPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERL 301
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
P L+TGR KG+ FGGFK +V LVD YMKK+I V+ V+ +TL +IN+AF
Sbjct: 302 PLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFEL 360
Query: 241 MHGGDCLRCVL 251
+ G +R ++
Sbjct: 361 LSSGQGVRSIM 371
>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
pdb|1E3L|B Chain B, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
Length = 376
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 157/251 (62%), Gaps = 2/251 (0%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M DR SRF+ G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG +G G
Sbjct: 126 LMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYG 185
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKV PGS AVFGLG V SR+I IDI+ +KF +AK G T+ +
Sbjct: 186 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL 245
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP++ DKP+Q V+ +LT GGVDYS +C G ++AA++C GWG+ +VG A E+
Sbjct: 246 NPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVG--AKVDEM 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+ ++ GR GT FGG+KS VP LV Y K+ +D VTH + IN+A
Sbjct: 304 TIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDL 363
Query: 241 MHGGDCLRCVL 251
M G +R +L
Sbjct: 364 MKEGKSIRTIL 374
>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3E|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
Inhibitor
pdb|1E3I|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
Inhibitor
Length = 376
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 157/251 (62%), Gaps = 2/251 (0%)
Query: 1 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 60
+M DR SRF+ G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG +G G
Sbjct: 126 LMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYG 185
Query: 61 AVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFV 120
A NTAKV PGS AVFGLG V SR+I IDI+ +KF +AK G T+ +
Sbjct: 186 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL 245
Query: 121 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 180
NP++ DKP+Q V+ +LT GGVDYS +C G ++AA++C GWG+ +VG A E+
Sbjct: 246 NPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVG--AKVDEM 303
Query: 181 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 240
+ ++ GR GT FGG+KS VP LV Y K+ +D VTH + IN+A
Sbjct: 304 TIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDL 363
Query: 241 MHGGDCLRCVL 251
M G +R +L
Sbjct: 364 MKEGKSIRTIL 374
>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From
Acinetobacter Calcoaceticus
Length = 371
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 11/240 (4%)
Query: 18 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 77
HF S+F+ Y + + + K+ P++ + LGCG+ TG GA N KV P S +
Sbjct: 138 HFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTW 197
Query: 78 GLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137
G G V S +I +DI + + AK G T +N K D P+ + ++T
Sbjct: 198 GAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQD-PVAAI-KEIT 255
Query: 138 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ----LVTGRVW 193
DGGV+++ E G+ +++ ++ G + V + Q +T F L+ G+
Sbjct: 256 DGGVNFALESTGSPEILKQGVD----ALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTI 311
Query: 194 KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 253
G G + +P LV Y + + D+ V EIN+A G L+ ++K+
Sbjct: 312 LGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKI 370
>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|B Chain B, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|C Chain C, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|D Chain D, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
Length = 352
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 9/213 (4%)
Query: 33 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 92
D+++A + + PL+ ++ + TG A +E G+ VAV G+G V
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKL 188
Query: 93 XXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV 151
R+I + P D AK +G T+ VN K D PI+ +++LT+G GVD + GN
Sbjct: 189 RGAGRIIAVGSRPVCVDAAKYYGATDIVNYK--DGPIESQIMNLTEGKGVDAAIIAGGNA 246
Query: 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF--KSRSQVPW 209
+M A++ G GT V G+ + + G K T GG R ++
Sbjct: 247 DIMATAVKIVKPG-GTIANVNYFGEGEVLDVPRLEWGCGMAHK-TIKGGLCPGGRLRMER 304
Query: 210 LVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYM 241
L+D K + + VTH I +AF M
Sbjct: 305 LIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337
>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|B Chain B, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|C Chain C, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|D Chain D, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1BXZ|A Chain A, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|B Chain B, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|C Chain C, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|D Chain D, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
Length = 352
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 9/213 (4%)
Query: 33 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 92
D+++A + + PL+ ++ + TG A +E G+ VAV G+G V
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIELGATVAVLGIGPVGLMAVAGAKL 188
Query: 93 XXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV 151
R+I + P D AK +G T+ VN K D PI+ +++LT+G GVD + GN
Sbjct: 189 RGAGRIIAVGSRPVCVDAAKYYGATDIVNYK--DGPIESQIMNLTEGKGVDAAIIAGGNA 246
Query: 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF--KSRSQVPW 209
+M A++ G GT V G+ + + G K T GG R ++
Sbjct: 247 DIMATAVKIVKPG-GTIANVNYFGEGEVLPVPRLEWGCGMAHK-TIKGGLCPGGRLRMER 304
Query: 210 LVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYM 241
L+D K + + VTH I +AF M
Sbjct: 305 LIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337
>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of C. Beijerinckii
Adh By T. Brockii Adh
Length = 351
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 10/208 (4%)
Query: 25 FSQYTVVHD--VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTV 82
F +Y V+D +++A + PL+ ++ + TG A +E G+ VAV G+G V
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVLGIGPV 178
Query: 83 XXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 141
R+I + P D AK +G T+ VN K D PI+ +++LT+G GV
Sbjct: 179 GLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK--DGPIESQIMNLTEGKGV 236
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 201
D + GN +M A++ G GT V G+ + + G K T GG
Sbjct: 237 DAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPRLEWGCGMAHK-TIKGGL 294
Query: 202 --KSRSQVPWLVDKYMKKEIKVDEYVTH 227
R + L D + + + + VTH
Sbjct: 295 CPGGRLRAEMLRDMVVYNRVDLSKLVTH 322
>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
pdb|1H2B|B Chain B, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
Length = 359
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 23/237 (9%)
Query: 19 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVF 77
FM TS S + D+S K+ APL + T AV A+ + PG+ VA+
Sbjct: 140 FMRTSHRSVIKLPKDISREKLVEMAPLADAGI------TAYRAVKKAARTLYPGAYVAIV 193
Query: 78 GLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 137
G+G + + VI +D+ +K A+ G V+ + P++QV+ +LT
Sbjct: 194 GVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR--RDPVKQVM-ELT 250
Query: 138 DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV-WKG 195
G GV+ + + +G+ + + + G +IVG G E+ ++++ V ++G
Sbjct: 251 RGRGVNVAMDFVGSQATVDYTPYLLGR-MGRLIIVG---YGGELRFPTIRVISSEVSFEG 306
Query: 196 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 251
+ G + ++ LV ++ +++V E H L EIN+ + G+ L R VL
Sbjct: 307 SLVGNY---VELHELVTLALQGKVRV-EVDIHK--LDEINDVLERLEKGEVLGRAVL 357
>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase
Length = 355
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 9/189 (4%)
Query: 66 AKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
A V G+ V V G G + ++V+ D+ + +AK G +F+ +
Sbjct: 166 AGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVG-ADFILEISN 224
Query: 126 DKP--IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR 183
+ P I + + L + + EC G + ++A + H G GT V+VG+ G E+++
Sbjct: 225 ESPEEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSG-GTLVLVGL---GSEMTSV 280
Query: 184 PFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 243
P LV + G F+ + P + K + V VTH L + EAF
Sbjct: 281 P--LVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEKALEAFETSKK 338
Query: 244 GDCLRCVLK 252
G L+ ++K
Sbjct: 339 GLGLKVMIK 347
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 9/232 (3%)
Query: 25 FSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVX 83
+S + V+ + V K+ + LD + + C T A + G V + G G +
Sbjct: 149 YSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLG 208
Query: 84 XXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD-KPIQQVLVDLTDG-GV 141
VI I P + A+ G +N ++ + ++ ++D+T G G
Sbjct: 209 LFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGA 268
Query: 142 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 201
D+ E G+ + E +G G + GVA + PF++ V K F G
Sbjct: 269 DFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPV---PFKVYEWLVLKNATFKGI 324
Query: 202 --KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 251
S V + + + +TH + L E N+A M + L+ +L
Sbjct: 325 WVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREALKVIL 376
>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
pdb|4EJM|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
Bound To Nadp
Length = 370
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 68 VEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 127
++ GS VA+ G G + + VI K A+ G T V+P D
Sbjct: 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDV 239
Query: 128 PIQQVL--VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 185
++ + V L GGVD EC G ++ + G GT VI+GV G+++ PF
Sbjct: 240 -VEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPF 297
Query: 186 QLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGE 233
++ + G F + D I++D ++ ++L E
Sbjct: 298 DILFRELR---VLGSFINPFVHRRAADLVATGAIEIDRXISRRISLDE 342
>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|B Chain B, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|C Chain C, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|D Chain D, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
Length = 352
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 9/213 (4%)
Query: 33 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 92
D+++A + + PL+ ++ + TG A +E GS V V G+G V
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 93 XXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV 151
R+IG+ P + AK +G T+ +N K+ + QV+ LT+G GVD G
Sbjct: 189 RGAGRIIGVGSRPICVEAAKFYGATDILNYKN-GHIVDQVM-KLTNGKGVDRVIMAGGGS 246
Query: 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF--KSRSQVPW 209
+ A++ G G + SG + + G K T GG R ++
Sbjct: 247 ETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHK-TIKGGLCPGGRLRMER 304
Query: 210 LVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYM 241
L+D K + + VTH I +AF M
Sbjct: 305 LIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337
>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|B Chain B, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|C Chain C, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
pdb|1JQB|D Chain D, Alcohol Dehydrogenase From Clostridium Beijerinckii:
Crystal Structure Of Mutant With Enhanced Thermal
Stability
Length = 351
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 10/209 (4%)
Query: 24 TFSQYTVVHD--VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81
F +Y V+D +++A + PL+ ++ + TG A +E GS V V G+G
Sbjct: 119 VFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGA 177
Query: 82 VXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140
V R+IG+ P + AK +G T+ +N K+ I+ ++ LT+G G
Sbjct: 178 VGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGH--IEDQVMKLTNGKG 235
Query: 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG 200
VD G + A++ G G + SG + + G K T GG
Sbjct: 236 VDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHK-TIKGG 293
Query: 201 F--KSRSQVPWLVDKYMKKEIKVDEYVTH 227
R + L D + + + + VTH
Sbjct: 294 LCPGGRLRAERLRDMVVYNRVDLSKLVTH 322
>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|B Chain B, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|C Chain C, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|D Chain D, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL8|A Chain A, Human SdhNAD+ COMPLEX
pdb|1PL8|B Chain B, Human SdhNAD+ COMPLEX
pdb|1PL8|C Chain C, Human SdhNAD+ COMPLEX
pdb|1PL8|D Chain D, Human SdhNAD+ COMPLEX
Length = 356
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 7/183 (3%)
Query: 71 GSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN-PKDHDKPI 129
G V V G G + ++V+ D+ + +AK G + K+ + I
Sbjct: 172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEI 231
Query: 130 QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT 189
+ + + + EC G + ++A + G GT V+VG+ G E++T P L+
Sbjct: 232 ARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSEMTTVP--LLH 285
Query: 190 GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRC 249
+ + G F+ + P + K + V VTH L + EAF G L+
Sbjct: 286 AAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKI 345
Query: 250 VLK 252
+LK
Sbjct: 346 MLK 348
>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
Length = 352
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 9/213 (4%)
Query: 33 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 92
D+++A + + PL+ ++ + TG A ++ GS V V G+G V
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKL 188
Query: 93 XXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV 151
R+IG+ P + AK +G T+ +N K+ + QV+ LT+G GVD G
Sbjct: 189 RGAGRIIGVGSRPICVEAAKFYGATDILNYKN-GHIVDQVM-KLTNGKGVDRVIMAGGGS 246
Query: 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF--KSRSQVPW 209
+ A+ G G + SG + + G K T GG R ++
Sbjct: 247 ETLSQAVSMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHK-TIKGGLCPGGRLRMER 304
Query: 210 LVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYM 241
L+D K + + VTH I +AF M
Sbjct: 305 LIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337
>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2DQ4|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2EJV|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
pdb|2EJV|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
Length = 343
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 12/184 (6%)
Query: 71 GSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 130
G V + G G + ++ D +P + A+ + VNP + D +
Sbjct: 165 GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA-DRLVNPLEED--LL 221
Query: 131 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG 190
+V+ +T GV+ E GN + + L G G + I+G+ + F L
Sbjct: 222 EVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDPIR-----FDLAGE 275
Query: 191 RVWKG-TAFGGFKSRSQVPWLVDKYMKKEIKVD--EYVTHNMTLGEINEAFRYMHGGDCL 247
V +G TAFG R W+ + +VD +TH + L EAF + G +
Sbjct: 276 LVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAV 335
Query: 248 RCVL 251
+ +L
Sbjct: 336 KVIL 339
>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|B Chain B, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|C Chain C, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|D Chain D, Human SdhNADHINHIBITOR COMPLEX
Length = 356
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 7/183 (3%)
Query: 71 GSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN-PKDHDKPI 129
G V V G G + ++V+ D+ + +AK G + K+ + I
Sbjct: 172 GHKVLVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEI 231
Query: 130 QQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT 189
+ + + + EC G + ++A + G GT V+VG+ G E +T P L+
Sbjct: 232 ARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSEXTTVP--LLH 285
Query: 190 GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRC 249
+ + G F+ + P + K + V VTH L + EAF G L+
Sbjct: 286 AAIREVDIKGVFRYCNTWPVAISXLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKI 345
Query: 250 VLK 252
LK
Sbjct: 346 XLK 348
>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|B Chain B, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|C Chain C, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|D Chain D, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1KEV|A Chain A, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|B Chain B, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|C Chain C, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|D Chain D, Structure Of Nadp-Dependent Alcohol Dehydrogenase
Length = 351
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 10/209 (4%)
Query: 24 TFSQYTVVHD--VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81
F +Y V+D +++A + PL+ ++ + TG A ++ GS V V G+G
Sbjct: 119 VFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGA 177
Query: 82 VXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140
V R+IG+ P + AK +G T+ +N K+ + QV+ LT+G G
Sbjct: 178 VGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN-GHIVDQVM-KLTNGKG 235
Query: 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG 200
VD G + A+ G G + SG + + G K T GG
Sbjct: 236 VDRVIMAGGGSETLSQAVSMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHK-TIKGG 293
Query: 201 F--KSRSQVPWLVDKYMKKEIKVDEYVTH 227
R + L D + + + + VTH
Sbjct: 294 LCPGGRLRAEMLRDMVVYNRVDLSKLVTH 322
>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|B Chain B, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|C Chain C, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|D Chain D, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
Length = 351
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 10/209 (4%)
Query: 24 TFSQYTVVHD--VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 81
F +Y V+D +++A + PL+ ++ + TG A ++ GS V V G+G
Sbjct: 119 VFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGA 177
Query: 82 VXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 140
V R+IG+ P + AK +G T+ +N K+ + QV+ LT+G G
Sbjct: 178 VGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN-GHIVDQVM-KLTNGKG 235
Query: 141 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG 200
VD G + A+ G G + SG + + G K T GG
Sbjct: 236 VDRVIMAGGGSETLSQAVSMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHK-TIKGG 293
Query: 201 F--KSRSQVPWLVDKYMKKEIKVDEYVTH 227
R + L D + + + + VTH
Sbjct: 294 LCPGGRLRAEMLRDMVVYNRVDLSKLVTH 322
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 57 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNF 114
T GA W TA +P S V V GLGT+ S V+ ++ DPK+ D AK
Sbjct: 302 TPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS-VVAVESDPKQLDAAKKI 358
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 57 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNF 114
T GA W TA +P S V V GLGT+ S V+ ++ DPK+ D AK
Sbjct: 302 TPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS-VVAVESDPKQLDAAKKI 358
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 57 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNF 114
T GA W TA +P S V V GLGT+ S V+ ++ DPK+ D AK
Sbjct: 287 TPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS-VVAVESDPKQLDAAKKI 343
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 57 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKN 113
T GA W TA +P S V V GLGT+ S V+ ++ DPK+ D AK
Sbjct: 23 TPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS-VVAVESDPKQLDAAKK 78
>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
pdb|4A2C|B Chain B, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
Length = 346
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 17 YHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 73
Y F+G+ F++Y VV +V + P++ + + GL A E ++
Sbjct: 106 YDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCENKNV 164
Query: 74 VAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP-IQQV 132
+ + G GT+ V IDI +K AK+FG + N + P +Q V
Sbjct: 165 I-IIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSV 223
Query: 133 LVDL 136
L +L
Sbjct: 224 LREL 227
>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
Length = 352
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 13/215 (6%)
Query: 33 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXX 92
D+++A + + PL+ ++ + TG A ++ G V V G+G V
Sbjct: 130 DMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANH 188
Query: 93 XXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV 151
R+ + D A +G T+ +N K+ D I + ++ TDG GVD G+V
Sbjct: 189 LGAGRIFAVGSRKHCCDIALEYGATDIINYKNGD--IVEQILKATDGKGVDKVVIAGGDV 246
Query: 152 SVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG----RVWKGTAFGGFKSRSQV 207
A++ G V G I + G + G GG R ++
Sbjct: 247 HTFAQAVKMIKPGSDIGN-VNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGG---RLRM 302
Query: 208 PWLVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYM 241
L+D K + + VTH I +AF M
Sbjct: 303 ERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337
>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
pdb|4EEX|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
Length = 348
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 26 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXX 85
+ VV D +V D P++ + GV T + V+PG +FG G +
Sbjct: 121 EEAIVVADYAVKVPDGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLGNL 178
Query: 86 XXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYS 144
++VI +DI+ K + AK G +N D + P+ ++ +T G GV +
Sbjct: 179 AIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVIINSGDVN-PVDEIK-KITGGLGVQSA 236
Query: 145 FECIGNVSVMRAALE 159
C +V R A E
Sbjct: 237 IVC----AVARIAFE 247
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 26 SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXX 85
+ VV D +V D P++ + GV T + V+PG +FG G +
Sbjct: 121 EEAIVVADYAVKVPDGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLGNL 178
Query: 86 XXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYS 144
++VI +DI+ K + AK G +N D + P+ ++ +T G GV +
Sbjct: 179 AIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVN-PVDEIK-KITGGLGVQSA 236
Query: 145 FECIGNVSVMRAALE 159
C +V R A E
Sbjct: 237 IVC----AVARIAFE 247
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
Query: 19 FMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCG---VPTGLGAVWNTAKVEPGSIV 74
++ STF+QY+ + V K+ +++ L G V T L V+ G V
Sbjct: 93 YISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYV 152
Query: 75 AVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 134
+F + I + +K AK +G +N D ++QVL
Sbjct: 153 LLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKED-ILRQVLK 211
Query: 135 DLTDGGVDYSFECIG 149
GVD SF+ +G
Sbjct: 212 FTNGKGVDASFDSVG 226
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Query: 15 PIYHFMGT---STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 71
P Y +G T+++Y V+ + ++A ++ + T V + V PG
Sbjct: 108 PRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPG 167
Query: 72 SIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 128
V V G+ +RVI K RAK G E VN D P
Sbjct: 168 DDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWP 224
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 18/234 (7%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXX 84
+++Y V KI ++ + C T A+ T +PG VA++G+G +
Sbjct: 120 YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIYGIGGLGH 178
Query: 85 XXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144
+ V+ +DI +K + AK G VNP D + GGV +
Sbjct: 179 VAVQYAKAMGLN-VVAVDIGDEKLELAKELGADLVVNPLKED---AAKFMKEKVGGVHAA 234
Query: 145 FECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS 203
+ ++A +G G V+VG+ +E+ F V G G+ G K
Sbjct: 235 VVTAVSKPAFQSAYNSIRRG-GACVLVGLPP--EEMPIPIFDTVLNGIKIIGSIVGTRKD 291
Query: 204 -RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF-RYMHGGDCLRCVLKMQD 255
+ + + + +K I+V L +INE F R + G R VL ++D
Sbjct: 292 LQEALQFAAEGKVKTIIEVQ-------PLEKINEVFDRMLKGQINGRVVLTLED 338
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 194 KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMH 242
+ A+ + ++ W K+ ++ DE +T +T EINE F Y H
Sbjct: 379 REEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINECFNYEH 427
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 18/234 (7%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXX 84
+++Y V KI ++ + C T A+ T +PG VA++G+G
Sbjct: 120 YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIYGIGGFGH 178
Query: 85 XXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 144
+ V+ +DI +K + AK G VNP D + GGV +
Sbjct: 179 VAVQYAKAMGLN-VVAVDIGDEKLELAKELGADLVVNPLKED---AAKFMKEKVGGVHAA 234
Query: 145 FECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS 203
+ ++A +G G V+VG+ +E+ F V G G+ G K
Sbjct: 235 VVTAVSKPAFQSAYNSIRRG-GACVLVGLPP--EEMPIPIFDTVLNGIKIIGSIVGTRKD 291
Query: 204 -RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF-RYMHGGDCLRCVLKMQD 255
+ + + + +K I+V L +INE F R + G R VL ++D
Sbjct: 292 LQEALQFAAEGKVKTIIEVQ-------PLEKINEVFDRMLKGQINGRVVLTLED 338
>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|B Chain B, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|C Chain C, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|D Chain D, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
Length = 365
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKV---EPGSIVAVFGLGT 81
F++Y V V + +++ + C T V+ KV +PG V + G+G
Sbjct: 145 FAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT----VYKGLKVTDTKPGDWVVISGIGG 200
Query: 82 VXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGG 140
+ + V +DID +K D A+ G T VN K P + + TDGG
Sbjct: 201 LGHMAVQYARAMGLN-VAAVDIDDRKLDLARRLGATVTVNAKTVADPAAYIRKE-TDGG 257
>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|B Chain B, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|C Chain C, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|D Chain D, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
Length = 360
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 66 AKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
A ++ G V V G+G V R+ + D A +G T+ +N K+
Sbjct: 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNG 221
Query: 126 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKG 164
D I + ++ TDG GVD G+V A++ G
Sbjct: 222 D--IVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG 259
>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase
pdb|1KOL|B Chain B, Crystal Structure Of Formaldehyde Dehydrogenase
Length = 398
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 46 DKVCLLGCGVPTGL-GAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDID 104
D CL +PTG GAV TA V PGS V V G G V + VI D++
Sbjct: 163 DLTCLSDI-LPTGYHGAV--TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 219
Query: 105 PKKFDRAKNFGVTEFVNPKDHDKPI-QQVLVDLTDGGVDYSFECIG 149
P + AK G + D P+ +Q+ L + VD + + +G
Sbjct: 220 PARLAHAKAQGFE--IADLSLDTPLHEQIAALLGEPEVDCAVDAVG 263
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 124 DHDKPIQQVLVDL------TDGGVDY-----SFECIGNVSVMRAALECCHKGWGTSVIVG 172
DH +V +DL +DG V +++ + + LE +G + +G
Sbjct: 326 DHSAIYDRVKIDLGQSGHSSDGAVATDALLKAYQRGSATTAQKRELETLVYKYGRYLTIG 385
Query: 173 VAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232
S +E S P L +W TA G + PW D +M ++++ + T++ +G
Sbjct: 386 ---SSRENSQLPSNLQG--IWSVTA--GDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMG 438
Query: 233 EINEAF-RYMHG 243
E+ E Y+ G
Sbjct: 439 ELAEPLIEYVEG 450
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 124 DHDKPIQQVLVDL------TDGGVDY-----SFECIGNVSVMRAALECCHKGWGTSVIVG 172
DH +V +DL +DG V +++ + + LE +G + +G
Sbjct: 326 DHSAIYDRVKIDLGQSGHSSDGAVATDALLKAYQRGSATTAQKRELETLVYKYGRYLTIG 385
Query: 173 VAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232
S +E S P L +W TA G + PW D +M ++++ + T++ +G
Sbjct: 386 ---SSRENSQLPSNLQG--IWSVTA--GDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMG 438
Query: 233 EINEAF-RYMHG 243
E+ E Y+ G
Sbjct: 439 ELAEPLIEYVEG 450
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 124 DHDKPIQQVLVDL------TDGGVDY-----SFECIGNVSVMRAALECCHKGWGTSVIVG 172
DH +V +DL +DG V +++ + + LE +G + +G
Sbjct: 325 DHSAIYDRVKIDLGQSGHSSDGAVATDALLKAYQRGSATTAQKRELETLVYKYGRYLTIG 384
Query: 173 VAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 232
S +E S P L +W TA G + PW D +M ++++ + T++ +G
Sbjct: 385 ---SSRENSQLPSNLQG--IWSVTA--GDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMG 437
Query: 233 EINEAF-RYMHG 243
E+ E Y+ G
Sbjct: 438 ELAEPLIEYVEG 449
>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In
Complex With Cacodylate
pdb|1Y9A|C Chain C, Alcohol Dehydrogenase From Entamoeba Histolotica In
Complex With Cacodylate
Length = 360
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 66 AKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 125
A ++ G V V G+G V R+ + D A +G T+ +N K+
Sbjct: 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNG 221
Query: 126 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKG 164
D I + ++ TDG GVD G V A++ G
Sbjct: 222 D--IVEQILKATDGKGVDKVVIAGGXVHTFAQAVKMIKPG 259
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 25 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG 80
+S VV + V +D APL+KV L C T + +KV G+ V V G G
Sbjct: 132 YSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFG 186
>pdb|3THU|A Chain A, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
pdb|3THU|B Chain B, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
pdb|3THU|C Chain C, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
Length = 426
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 11 INGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 62
I G P+Y +G ++ + T + D +D QA K L CGVP G+ +
Sbjct: 124 IAGLPVYQLLGGASREGVMVYGHANGTTIEDTVKVALDYQAQGYKAIRLQCGVP-GMAST 182
Query: 63 WNTAK 67
+ +K
Sbjct: 183 YGVSK 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,481,295
Number of Sequences: 62578
Number of extensions: 295388
Number of successful extensions: 755
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 70
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)