Query 025258
Match_columns 255
No_of_seqs 221 out of 1302
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgp_A HNH endonuclease; Q39X4 99.5 7.8E-16 2.7E-20 122.9 0.5 59 174-232 31-92 (112)
2 1e7l_A GP49, recombination end 95.8 0.0032 1.1E-07 53.3 2.1 55 167-224 9-69 (157)
3 3m7k_A Restriction endonucleas 95.6 0.0039 1.3E-07 51.7 1.7 52 172-226 53-122 (142)
4 1tif_A IF3-N, translation init 78.3 8.5 0.00029 28.7 7.2 56 94-158 10-65 (78)
5 2jb0_B Colicin E7; hydrolase/i 50.5 3.6 0.00012 33.7 0.2 35 185-219 91-126 (131)
6 1fr2_B Colicin E9; protein-pro 48.9 3.8 0.00013 33.7 0.1 35 185-219 94-129 (134)
7 7cei_B Protein (colicin E7 imm 44.9 5.1 0.00017 35.0 0.3 36 185-220 166-202 (206)
8 3gox_A Restriction endonucleas 42.5 7.1 0.00024 34.1 0.8 51 166-223 120-181 (200)
9 6rxn_A Rubredoxin; electron tr 22.3 17 0.00059 24.4 -0.1 38 177-222 3-42 (46)
10 3kpb_A Uncharacterized protein 19.4 1E+02 0.0035 21.8 3.6 31 94-124 90-120 (122)
No 1
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=99.53 E-value=7.8e-16 Score=122.86 Aligned_cols=59 Identities=39% Similarity=0.584 Sum_probs=53.6
Q ss_pred HHHCCCcccccCCC---CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHHHHhhhh
Q 025258 174 MYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQL 232 (255)
Q Consensus 174 l~RD~~~CqYCG~~---~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpeea~m~L 232 (255)
+.|++++|+|||.. ..+++|||+|++.||.++|+||+++|..||..|++++++++.-.+
T Consensus 31 l~r~~~~C~yCg~~~~~~~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~~~~~~e~~~~l 92 (112)
T 2qgp_A 31 NRIARGICHYCGEIFPPEELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYLLPVEWEEYL 92 (112)
T ss_dssp HHHHHTBCTTTCCBCCGGGEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHHTCCSHHHHHHH
T ss_pred HHHcCCcCCCCCCcCCCCCcEEEEEeehhcCCCCChhhChhhCHHHHHHHccCCHHHHHHHH
Confidence 67899999999987 358999999999999999999999999999999999999875444
No 2
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=95.83 E-value=0.0032 Score=53.32 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=41.9
Q ss_pred HHHHHHHHHHCCCcccccCCC-----CCCccceEEeCcCCCCCchhhHH-HhchhhhhhhcCCC
Q 025258 167 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLV-AACFKCNSRKGKKT 224 (255)
Q Consensus 167 ~~~R~~Vl~RD~~~CqYCG~~-----~~ltVDHIiP~S~GG~~tweNLv-~aC~~CN~~Kgnrt 224 (255)
+..++.+++.++++|+.|+.+ ..+++||-.+.. |..+ .++. ++|..||...|...
T Consensus 9 ~~~~~~l~~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~--g~~t-G~VRGlLC~~CN~~lG~~~ 69 (157)
T 1e7l_A 9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELN--GPKA-GKVRGLLCNLCDAAEGQMK 69 (157)
T ss_dssp HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCS--STTT-TBEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcCcccCCccccccccccccCCCCCC--CCCC-CcchhhccHhHhchhcccc
Confidence 357889999999999999986 467999997665 2222 3666 89999999865543
No 3
>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*
Probab=95.61 E-value=0.0039 Score=51.67 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHH-HCCCcccccCCC-----------------CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCCCHH
Q 025258 172 NLMY-RDNFTCQYCSSR-----------------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLE 226 (255)
Q Consensus 172 ~Vl~-RD~~~CqYCG~~-----------------~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnrtpe 226 (255)
..+. ++.-.|-|||-. ..|+||.. .+. -..+.+||+.||..||+.|+++.-.
T Consensus 53 ~WY~~~q~k~C~YCgite~~~k~L~k~k~Rg~~~~~LeIeR~--~~~-~~Ys~dNLaLAC~~CNnaKsdk~ta 122 (142)
T 3m7k_A 53 AWYGLSAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRS--DSF-EGYSPQNARLACFICNRIKSNIFSA 122 (142)
T ss_dssp HHHCCGGGCBCTTTCCBHHHHHTTTCBCTTSCBCCSCEEEES--STT-SCBCTTTEEEECHHHHHHHTTTSCH
T ss_pred HHHccCCCCceeeecccHHHHHHHhhccCCCccccceEEecc--CCc-cccCHHHHHHHHHHHhccccccccc
Confidence 4555 677899999964 12555542 111 2246999999999999999998744
No 4
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=78.32 E-value=8.5 Score=28.74 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=43.9
Q ss_pred ccccceEEEEcCCcceeeeeeHHHHHHHHHcCceeEEeecCCeeeCCCcceecCcEEEEecceeh
Q 025258 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTINSPNGSFYIPAVLRVRHLLQV 158 (255)
Q Consensus 94 ~l~~~~vLvLn~sy~Pl~~is~qrAi~l~~~gkAevl~~~~~~vrS~s~~~~vPsVIrL~~yv~~ 158 (255)
++....|.+.+..++.+++++.++|+.+.-.-..+.|+. |++.. |.|-++-.|-+.
T Consensus 10 ~Ir~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVev------sp~a~---PPVCkImDygK~ 65 (78)
T 1tif_A 10 QIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLV------APNAK---PPVCRIMDYGKF 65 (78)
T ss_dssp GCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEE------ETTSS---SCEEEEECHHHH
T ss_pred ccCCCEEEEECCCCcCCCcccHHHHHHHHHHcCCCEEEE------CCCCC---CCEEEEecchhH
Confidence 466678999999999999999999999987777777774 33333 788888776433
No 5
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=50.54 E-value=3.6 Score=33.75 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=26.8
Q ss_pred CCCCCCccceEEeCcCCCC-CchhhHHHhchhhhhh
Q 025258 185 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCNSR 219 (255)
Q Consensus 185 G~~~~ltVDHIiP~S~GG~-~tweNLv~aC~~CN~~ 219 (255)
|.....+++|+.|.+.||. .+.+||...=+.-|..
T Consensus 91 G~r~kfelHH~~~I~~GG~VYdlDNL~i~TPk~Hi~ 126 (131)
T 2jb0_B 91 GKRTSFELHHEKPISQNGGVYDMDNISVVTPKRHID 126 (131)
T ss_dssp TTBCBCEEEESSCCC--CCSSBGGGEEEECHHHHHH
T ss_pred CCeeEEEEEeechhhcCCeeeeeeeEEEcCcchhhh
Confidence 3335789999999999998 8999999887766654
No 6
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=48.87 E-value=3.8 Score=33.74 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=28.7
Q ss_pred CCCCCCccceEEeCcCCCC-CchhhHHHhchhhhhh
Q 025258 185 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCNSR 219 (255)
Q Consensus 185 G~~~~ltVDHIiP~S~GG~-~tweNLv~aC~~CN~~ 219 (255)
|.....+++|+.|.+.||. .+.+||...=+.-|..
T Consensus 94 G~r~kfelHH~~~I~~GG~VYdlDNL~i~TPk~Hi~ 129 (134)
T 1fr2_B 94 GGRKVYELHHDKPISQGGEVYDMDNIRVTTPKRHID 129 (134)
T ss_dssp TTBCBCEEEESSCGGGTCCSSBGGGEEEECHHHHHH
T ss_pred CCeeEEEEEecchhhcCCeeeeeecEEEcCcccccc
Confidence 3335789999999999999 8999999887766654
No 7
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=44.91 E-value=5.1 Score=35.01 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=29.4
Q ss_pred CCCCCCccceEEeCcCCCC-CchhhHHHhchhhhhhh
Q 025258 185 SSRENLTIDHVVPASRGGE-WKWENLVAACFKCNSRK 220 (255)
Q Consensus 185 G~~~~ltVDHIiP~S~GG~-~tweNLv~aC~~CN~~K 220 (255)
|.....+++|+.|.+.||. .+.+||+..-+.-|...
T Consensus 166 G~R~kfELHH~~~I~~GG~VYDiDNLrI~TPK~Hiei 202 (206)
T 7cei_B 166 GKRTSFELHHEKPISQNGGVYDMDNISVVTPKRHIDI 202 (206)
T ss_dssp TTBCBCEEEESSCSSSSCCSSBTTSEEEECHHHHHHT
T ss_pred CCeeeEEeecCcccccCCeeecccceeecChHHHHhh
Confidence 4445789999999999998 89999998877766543
No 8
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=42.54 E-value=7.1 Score=34.07 Aligned_cols=51 Identities=29% Similarity=0.439 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHCC-----CcccccCCC------CCCccceEEeCcCCCCCchhhHHHhchhhhhhhcCC
Q 025258 166 NNLSRKNLMYRDN-----FTCQYCSSR------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 223 (255)
Q Consensus 166 ~~~~R~~Vl~RD~-----~~CqYCG~~------~~ltVDHIiP~S~GG~~tweNLv~aC~~CN~~Kgnr 223 (255)
...-++.+++.++ ++|+.|+.+ ..+.+||=.- .|. .. -.+|..||..-|..
T Consensus 120 T~eey~~L~e~Qg~~~~~G~C~ICg~~~~~~~~k~lvVDHDH~---TG~--VR--GlLC~~CN~~LG~~ 181 (200)
T 3gox_A 120 SSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHD---TGW--GR--EWICDSCNTGLGRF 181 (200)
T ss_dssp CHHHHHHHHTTCCCTTCEEECTTTCCEEEBTTTBCEEEEECTT---TCC--EE--EEEEHHHHHHHHHT
T ss_pred CHHHHHHHHHHcccCCCCCcCcCCCCCCCcCcccceeeecccC---CCc--Ee--cccchhhcchhccc
Confidence 4567888999999 999999987 2478888532 222 11 25899999866543
No 9
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.32 E-value=17 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.468 Sum_probs=24.6
Q ss_pred CCCcccccCCCCCCccceEEeCcCCCCCchhhHHH--hchhhhhhhcC
Q 025258 177 DNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVA--ACFKCNSRKGK 222 (255)
Q Consensus 177 D~~~CqYCG~~~~ltVDHIiP~S~GG~~tweNLv~--aC~~CN~~Kgn 222 (255)
..+.|..||- |---..|....|+.|-- .|+.|...|..
T Consensus 3 ~~y~C~vCGy--------vyd~~~Gd~t~f~~lP~dw~CP~Cg~~k~~ 42 (46)
T 6rxn_A 3 QKYVCNVCGY--------EYDPAEHDNVPFDQLPDDWCCPVCGVSKDQ 42 (46)
T ss_dssp CCEEETTTCC--------EECGGGGTTCCGGGSCTTCBCTTTCCBGGG
T ss_pred CEEECCCCCe--------EEeCCcCCCcchhhCCCCCcCcCCCCcHHH
Confidence 3578999993 22223344466777744 89999887754
No 10
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=19.43 E-value=1e+02 Score=21.76 Aligned_cols=31 Identities=19% Similarity=-0.108 Sum_probs=24.7
Q ss_pred ccccceEEEEcCCcceeeeeeHHHHHHHHHc
Q 025258 94 ELACFRGLVLDISYRPVNVVCWKRAICLEFM 124 (255)
Q Consensus 94 ~l~~~~vLvLn~sy~Pl~~is~qrAi~l~~~ 124 (255)
.-....+.|+|..++++++++.++.+..+..
T Consensus 90 ~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 90 KYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp HHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred HhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 3344678899999999999999998887654
Done!