BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025261
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486
PE=2 SV=1
Length = 224
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 16/143 (11%)
Query: 1 MTDVRLHIYDVTNSGSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQG 60
+T V L++YD+T N ++ GIG IFHS ++ + + E+ +G E
Sbjct: 25 LTPVYLNVYDLTPVN-----------NYLYWFGIG---IFHSGIEAH-NLEYCYGAHEYP 69
Query: 61 -SGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFC 119
SGV+ P + +R S++LG T+ S + +LSR++ G++Y L+ +NCNHF
Sbjct: 70 TSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFT 129
Query: 120 DEFCDRLGVPKLPGWVNRFANAG 142
+E C +L +PGW+NR A G
Sbjct: 130 EEVCLQLTGKPIPGWINRLARVG 152
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1
Length = 192
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 10/126 (7%)
Query: 23 ILNINKIF-----KDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSGRNP----M 73
ILN+ ++ +G+G +FHS +QVYG E G SGVF G +
Sbjct: 7 ILNVYDMYWINEYTSSLGIG-VFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGDT 65
Query: 74 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 133
+ ++E+I LG T+F+ + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 FKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 125
Query: 134 WVNRFA 139
WVNR A
Sbjct: 126 WVNRLA 131
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1
Length = 196
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 22 TILNINKI-----FKDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSG----RNP 72
ILN+ + F +G+G +FHS +++YG E G SG+F G
Sbjct: 6 VILNVYDMYWINEFTSSLGIG-VFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGE 64
Query: 73 MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 132
+ ++E+IVLG T+F+ V +I+ E+ +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 65 TFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIP 124
Query: 133 GWVNRFA 139
WVNR A
Sbjct: 125 RWVNRLA 131
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2
SV=1
Length = 194
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 22 TILNINKIF-----KDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSGR----NP 72
+LN+ ++ IG+G +FHS ++VYG E G SG+F G
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIG-VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGE 65
Query: 73 MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 132
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 TFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIP 125
Query: 133 GWVNRFA 139
W+NR A
Sbjct: 126 RWINRLA 132
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1
Length = 194
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 22 TILNINKIF-----KDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSGR----NP 72
+LN+ ++ IG+G +FHS ++VYG E G SG+F G
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIG-VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGE 65
Query: 73 MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 132
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 TFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIP 125
Query: 133 GWVNRFA 139
W+NR A
Sbjct: 126 RWINRLA 132
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1
Length = 193
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 22 TILNINKIF-----KDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSGR----NP 72
ILN+ ++ +G+G +FHS ++VYG E G SG+F G
Sbjct: 6 VILNVYDMYWMNEYTSSLGIG-VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGE 64
Query: 73 MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 132
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 65 TFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIP 124
Query: 133 GWVNRFA 139
WVNR A
Sbjct: 125 RWVNRLA 131
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1
Length = 194
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 22 TILNINKIF-----KDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSGR----NP 72
+LN+ ++ IG+G +FHS ++VYG E G SG+F G
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIG-VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGE 65
Query: 73 MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 132
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 TFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIP 125
Query: 133 GWVNRFA 139
W+NR A
Sbjct: 126 RWINRLA 132
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1
Length = 194
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 22 TILNINKIF-----KDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSGR----NP 72
+LN+ ++ IG+G +FHS ++VYG E G SG+F G
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIG-VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGE 65
Query: 73 MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 132
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 TFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIP 125
Query: 133 GWVNRFA 139
W+NR A
Sbjct: 126 RWINRLA 132
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1
Length = 194
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 22 TILNINKIF-----KDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSGR----NP 72
+LN+ ++ IG+G +FHS ++VYG E G SG+F G
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIG-VFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGE 65
Query: 73 MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 132
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 TFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIP 125
Query: 133 GWVNRFA 139
W+NR A
Sbjct: 126 RWINRLA 132
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hag1 PE=1 SV=1
Length = 201
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 38 GIFHSAVQVYGDEEWSFGFCEQ--GSGVFSCPSGRNPM--YTYRESIVLGKTNFSIFKVN 93
GI+H+ + + G +E++FG E +GVF+ R P+ +R SI L V+
Sbjct: 26 GIYHTGLVLEG-KEYAFGAHEIPGSTGVFAT-MPRPPLEGCRWRCSIALPNCTLPKPDVD 83
Query: 94 QILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDA 144
+IL LS+E+ G SY LL RNCNHF + L +P ++NR + G A
Sbjct: 84 RILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIGLA 134
>sp|Q6GLM5|DESI1_XENLA Desumoylating isopeptidase 1 OS=Xenopus laevis GN=desi1 PE=2 SV=1
Length = 169
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 4 VRLHIYDVTNSGSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGV 63
VRL++YD++ + + + +L G + GI+H+++ V+ DEE+ +G G+
Sbjct: 10 VRLYVYDMSRGLARRLSPVML--------GKQLEGIWHTSIIVF-DEEFFYG----REGI 56
Query: 64 FSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSRE-WPGNSYDLLGRNCNHFCDEF 122
SC GR + + LG T + + L L + G SY L NCN F +E
Sbjct: 57 TSCLPGRTMLGEPDSVMELGITEVTEEIFLEYLSSLGESGFSGESYHLFDHNCNTFSNEV 116
Query: 123 CDRLGVPKLPGWVNRFAN 140
L K+P ++ +
Sbjct: 117 AQFLTGKKIPSYITELPS 134
>sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1 OS=Homo sapiens GN=DESI1 PE=1 SV=1
Length = 168
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 1 MTDVRLHIYDVTNSGSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQG 60
+ V+L++YD++ + + + +L G + GI+H+++ V+ DE + FG
Sbjct: 6 LYPVKLYVYDLSKGLARRLSPIML--------GKQLEGIWHTSIVVHKDE-FFFG----S 52
Query: 61 SGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSRE-WPGNSYDLLGRNCNHFC 119
G+ SCP G + + +G T + + L L + G +Y+L NCN F
Sbjct: 53 GGISSCPPGGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFS 112
Query: 120 DEFCDRLGVPKLPGWVNRFAN 140
+E L K+P ++ +
Sbjct: 113 NEVAQFLTGRKIPSYITDLPS 133
>sp|Q4KM30|DESI1_RAT Desumoylating isopeptidase 1 OS=Rattus norvegicus GN=Desi1 PE=2
SV=1
Length = 168
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 1 MTDVRLHIYDVTNSGSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQG 60
+ V+L++YD++ + + + +L G + GI+H+++ V+ DE + FG
Sbjct: 6 LYPVKLYVYDLSKGLARRLSPIML--------GKQLEGIWHTSIVVHKDE-FFFG----S 52
Query: 61 SGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSRE-WPGNSYDLLGRNCNHFC 119
SG+ SC G + + +G T + + L L + G +Y+L NCN F
Sbjct: 53 SGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFS 112
Query: 120 DEFCDRLGVPKLPGWV 135
+E L K+P ++
Sbjct: 113 NEVAQFLTGRKIPSYI 128
>sp|Q9CQT7|DESI1_MOUSE Desumoylating isopeptidase 1 OS=Mus musculus GN=Desi1 PE=1 SV=1
Length = 168
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 1 MTDVRLHIYDVTNSGSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQG 60
+ V+L++YD++ + + + +L G + GI+H+++ V+ DE + FG
Sbjct: 6 LYPVKLYVYDLSKGLARRLSPIML--------GKQLEGIWHTSIVVHKDE-FFFG----S 52
Query: 61 SGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSRE-WPGNSYDLLGRNCNHFC 119
SG+ SC G + + +G T + + L L + G +Y+L NCN F
Sbjct: 53 SGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFS 112
Query: 120 DEFCDRLGVPKLPGWV 135
+E L K+P ++
Sbjct: 113 NEVAQFLTGRKIPSYI 128
>sp|Q54QD3|PKS22_DICDI Probable polyketide synthase 22 OS=Dictyostelium discoideum
GN=pks22 PE=3 SV=1
Length = 2499
Score = 35.8 bits (81), Expect = 0.29, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 30/175 (17%)
Query: 65 SCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCD 124
+C S N ++ ESIV GK+N+S+ IL +S ++ G++
Sbjct: 176 ACSSSLNAVHLGYESIVNGKSNYSVVAGCNILLNPYITRSFHSINITGKS---------- 225
Query: 125 RLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVNGT 184
G N F + D + G L L++ I ++ Y + G +SNV+GT
Sbjct: 226 --------GRCNSFDESADGFVRSEGVVVLILKRLSLAIQDGDQI-YCVMKGSSSNVDGT 276
Query: 185 NGANGTNGAVPDSPSN---------SNRGTPRFQGTWFKNLITTGAKPSSSSDIE 230
TN P + S+ G ++Q F L +TG + ++E
Sbjct: 277 --FKKTNFFAPSKNAQSTNIKNAFLSSNGAMKYQDIDFFELHSTGTQVGDPIEVE 329
>sp|Q54QD1|PKS23_DICDI Probable polyketide synthase 23 OS=Dictyostelium discoideum
GN=pks23 PE=3 SV=1
Length = 2499
Score = 35.8 bits (81), Expect = 0.29, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 38/228 (16%)
Query: 15 GSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVF---SCPSGRN 71
G+ T+ +++N F+ IF+ + + + S+ F +G+ + +C S N
Sbjct: 128 GAANTDYSLIN----FEQNEAPINIFNGTLSAFANR-ISYCFDLRGTSLTLDTACSSSLN 182
Query: 72 PMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKL 131
++ ESIV GK+N+S+ IL +S ++ G++
Sbjct: 183 AVHLGYESIVNGKSNYSVVAGCNILLNPYITRSFHSINITGKS----------------- 225
Query: 132 PGWVNRFANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVNGTNGANGTN 191
G N F + D + G L L++ I ++ Y + G +SNV+GT TN
Sbjct: 226 -GRCNSFDESADGFVRSEGVVVLILKRLSLAIQDGDQI-YCVMKGSSSNVDGT--FKKTN 281
Query: 192 GAVPDSPSN---------SNRGTPRFQGTWFKNLITTGAKPSSSSDIE 230
P + S+ G ++Q F L +TG + ++E
Sbjct: 282 FFAPSKNAQSTNIKNAFLSSNGAMKYQDIDFFELHSTGTQVGDPIEVE 329
>sp|Q55DM7|PKS2_DICDI Probable polyketide synthase 2 OS=Dictyostelium discoideum GN=pks2
PE=3 SV=1
Length = 3010
Score = 35.0 bits (79), Expect = 0.51, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 25/149 (16%)
Query: 65 SCPSGRNPMYTYRESIVLGKTNFSIF-KVNQILR-ELSREWPGNSYDLLGRNCNHFCDEF 122
+C S N ++ ESIV GK+++SI VN I+ + SR + Y +
Sbjct: 173 ACSSSLNAVHLGYESIVNGKSDYSIVGGVNFIINPQQSRAF---KYAM------------ 217
Query: 123 CDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVN 182
V G F + D + G L L+ I +++ Y + G +SNV+
Sbjct: 218 -----VTSKTGKCKAFDESADGFVRSEGAVVLILKSLSKSIEDGNQI-YSIIKGSSSNVD 271
Query: 183 GTNGANGTNGAVPDSPSNSNRGTPRFQGT 211
GT N TN P S SN F T
Sbjct: 272 GT--LNKTNYFAPSKVSQSNNMQKAFDST 298
>sp|Q54C80|EXPL8_DICDI Expansin-like protein 8 OS=Dictyostelium discoideum GN=expl8 PE=3
SV=1
Length = 485
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 6 LHIYDVTNSGSEKTNNTILNI---NKIFKDGIG----VGGIFHSAVQVYGDEEWSFGFCE 58
+ + DV ++GS T + + N N+ F D IG G IF Q+ S G+
Sbjct: 85 VMVADVCDAGSACTQSDLFNFIIPNEEF-DKIGNRSDYGNIFSLCYQIV-----SCGYSG 138
Query: 59 QGSGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWP 104
GVF+ PS +TY S+V N +I KV +++ LS WP
Sbjct: 139 NVQGVFTGPSSSPNTFTYFLSVVFSNNNVAIKKV--LIKGLS--WP 180
>sp|A5N1D3|THIM_CLOK5 Hydroxyethylthiazole kinase OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=thiM PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 172 RFLAGVASNVNGTNGANGTNGAVPDSPSNSNRGTPRFQGTWFKNLITTGAKPSSSSDIEN 231
+FLAG SNV G + GA+ S S + T K+ I G +S+ IEN
Sbjct: 131 KFLAGETSNVKGVDSLEDGEGALECSRILSEKYNCVVAATGKKDFIVQG---KNSAIIEN 187
Query: 232 HEEELSSATGS 242
E L++ TG+
Sbjct: 188 GTEMLTNITGA 198
>sp|B9E564|THIM_CLOK1 Hydroxyethylthiazole kinase OS=Clostridium kluyveri (strain NBRC
12016) GN=thiM PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 172 RFLAGVASNVNGTNGANGTNGAVPDSPSNSNRGTPRFQGTWFKNLITTGAKPSSSSDIEN 231
+FLAG SNV G + GA+ S S + T K+ I G +S+ IEN
Sbjct: 131 KFLAGETSNVKGVDSLEDGEGALECSRILSEKYNCVVAATGKKDFIVQG---KNSAIIEN 187
Query: 232 HEEELSSATGS 242
E L++ TG+
Sbjct: 188 GTEMLTNITGA 198
>sp|Q1GX86|PRMA_METFK Ribosomal protein L11 methyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=prmA
PE=3 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 192 GAVPDSPSNSNRGTPRFQ-----------GTWFKNLITTGAKPSSSSDIENHEEELSSAT 240
GA+ S ++N TP Q G W +N++T A S+D+++ EELS+AT
Sbjct: 26 GALSASIEDANAETPDEQPIFGEPGDPPPGIWQQNVVT--ALLDESADLDSLLEELSAAT 83
Query: 241 GSRSRRSSTAT 251
G R ST T
Sbjct: 84 GITDFRYSTET 94
>sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens GN=USP47
PE=1 SV=3
Length = 1375
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 12 TNSGSEKTNNTILNINKIFKD--------GIGVGGIFHSAVQVYGDEEWSFGFCEQ 59
TNSG+EK + + L N + + G GG +++ ++ + DE+W + F +Q
Sbjct: 468 TNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQW-YSFNDQ 522
>sp|Q09623|YS84_CAEEL Uncharacterized RING finger protein ZK945.4 OS=Caenorhabditis
elegans GN=ZK945.4 PE=4 SV=3
Length = 499
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 61 SGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCD 120
S + +CP R +++ + K NFSI ++ Q +++ + RN N CD
Sbjct: 48 SSIIACPFDRIETRIWKKDVTRLKKNFSILEIKQEVKDRKNRVISEKNEKKERNKNGVCD 107
Query: 121 E 121
E
Sbjct: 108 E 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,579,955
Number of Sequences: 539616
Number of extensions: 4290392
Number of successful extensions: 9847
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 9695
Number of HSP's gapped (non-prelim): 183
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)