Query 025261
Match_columns 255
No_of_seqs 170 out of 442
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 1.7E-49 3.8E-54 350.9 11.4 196 2-217 14-210 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 1.5E-47 3.3E-52 321.9 8.8 145 2-164 1-150 (151)
3 PF04970 LRAT: Lecithin retino 92.3 0.047 1E-06 44.0 0.5 35 86-123 85-120 (125)
4 PF05608 DUF778: Protein of un 90.6 0.5 1.1E-05 40.2 4.9 41 88-128 75-115 (136)
5 PF08405 Calici_PP_N: Viral po 83.7 1.3 2.8E-05 42.8 3.9 74 38-126 21-98 (358)
6 PF09601 DUF2459: Protein of u 70.3 5.4 0.00012 34.8 3.6 44 85-129 96-162 (173)
7 PF13387 DUF4105: Domain of un 51.8 14 0.0003 31.6 2.8 53 80-132 98-154 (176)
8 KOG3150 Uncharacterized conser 37.9 26 0.00056 31.1 2.3 63 72-134 72-137 (182)
9 PF11328 DUF3130: Protein of u 37.5 1.7E+02 0.0037 23.5 6.7 74 82-168 1-83 (90)
10 PF00767 Poty_coat: Potyvirus 37.3 18 0.00039 33.4 1.4 78 112-189 128-218 (237)
11 cd02998 PDI_a_ERp38 PDIa famil 36.8 16 0.00035 26.8 0.8 45 92-136 36-81 (105)
12 PF04412 DUF521: Protein of un 35.2 41 0.00089 33.3 3.5 52 84-136 267-326 (400)
13 TIGR02117 chp_urease_rgn conse 30.6 61 0.0013 29.2 3.6 43 85-128 126-192 (208)
14 TIGR01514 NAPRTase nicotinate 29.6 22 0.00047 35.2 0.6 42 90-131 46-88 (394)
15 PF04046 PSP: PSP; InterPro: 26.6 59 0.0013 23.2 2.2 25 118-142 5-31 (48)
16 smart00581 PSP proline-rich do 22.6 81 0.0018 23.1 2.3 25 118-142 9-35 (54)
17 PF14706 Tnp_DNA_bind: Transpo 20.7 1.4E+02 0.0031 21.8 3.3 20 155-175 35-54 (58)
18 KOG3967 Uncharacterized conser 20.6 33 0.00072 32.3 -0.0 56 48-116 16-71 (297)
19 cd01781 AF6_RA_repeat2 Ubiquit 20.0 2.3E+02 0.005 23.1 4.7 39 75-113 15-54 (100)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-49 Score=350.91 Aligned_cols=196 Identities=38% Similarity=0.565 Sum_probs=160.7
Q ss_pred eeEEEEEeeCCCCcccccchhhhhccccccccceecceeeeeEEEcCceeEEeccccC-CCceEecCCCCCCCcceEEEE
Q 025261 2 TDVRLHIYDVTNSGSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQ-GSGVFSCPSGRNPMYTYRESI 80 (255)
Q Consensus 2 ~~V~LnVYDLs~g~a~~~s~~ll~lN~~f~~g~gl~GIyHTGVvVyG~eEY~FG~~~~-gsGI~~~~Pg~~p~g~~resI 80 (255)
.+|+|||||+++- |+ |..++|+ |||||||||||+ ||+||+|+. .+|||+++|+.+|+++||++|
T Consensus 14 ~~v~lnvyd~~~~------------n~-y~~~lGl-GIfHSgIeV~g~-EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI 78 (214)
T KOG0324|consen 14 VPVYLNVYDLTPI------------NK-YLYWLGL-GIFHSGIEVHGV-EYAYGAHEYPSSGIFEVEPGNCPEFTFRKSI 78 (214)
T ss_pred eeeeeeeecceeh------------hh-hhhhhcc-eeEeeeEEEece-eeeccccccCCCCeEeeCCCCCCCCceeEEE
Confidence 4799999999862 32 3358888 999999999999 999999985 599999999999999999999
Q ss_pred EecceechHHHHHHHHHHhccCCCCCccccccCcccchHHHHHhhcCCCCCChHHHhHHhhhhhHHHhhcccchhhhhHH
Q 025261 81 VLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAK 160 (255)
Q Consensus 81 ~LG~T~~t~~e~~~iL~~L~~~f~g~sYdLL~rNCNHFSdel~~~L~gk~IP~wInRlA~iG~~~~ev~~~~~t~~gq~~ 160 (255)
.||.|++++++|++||++|+++|+|++||||.|||||||+++|++|+||+||+||||||++|.. ++.+..-|.-+.+
T Consensus 79 ~lG~Td~~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~---~~~~~~~p~~~~~ 155 (214)
T KOG0324|consen 79 LLGSTDLTEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLC---SLCNCLLPMLQNL 155 (214)
T ss_pred EecCCCCCHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhh---hHHhhcchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999965 2225556888888
Q ss_pred HHHHHhHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCCCCCCceehhhhhHhh
Q 025261 161 TEIVSASKVAYRFLAGVASNVNGTNGANGTNGAVPDSPSNSNRGTPRFQGTWFKNLI 217 (255)
Q Consensus 161 ~~~i~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (255)
.++..+.+++.++.-...++.+..... +.+..+--++.+..+.++.|+.|.+...
T Consensus 156 t~~~~~~~~~~~~~~~~~~~~~~~s~~--s~~~~~~~~s~s~~~~~~~~~~~~~~~~ 210 (214)
T KOG0324|consen 156 TPVVLASSVVERFDEEENSKKKLASSG--SPSRSAPLLSASDSGLILLSGPSLKRER 210 (214)
T ss_pred CccccccccccccCccccccccccccC--CCcccCCCCCcCcCccccccCccccccc
Confidence 888888888777766654443332211 1222233345566778888888887643
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=1.5e-47 Score=321.86 Aligned_cols=145 Identities=41% Similarity=0.743 Sum_probs=110.0
Q ss_pred eeEEEEEeeCC---CCcccccchhhhhccccccccceecceeeeeEEEcCceeEEeccccC-CCceEecCCCC-CCCcce
Q 025261 2 TDVRLHIYDVT---NSGSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQ-GSGVFSCPSGR-NPMYTY 76 (255)
Q Consensus 2 ~~V~LnVYDLs---~g~a~~~s~~ll~lN~~f~~g~gl~GIyHTGVvVyG~eEY~FG~~~~-gsGI~~~~Pg~-~p~g~~ 76 (255)
++|+||||||+ .+++++++... .|+.++|||||||||||+ ||+||+|+. .+||+.++|+. .++++|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~--------lG~~~~Gi~HtgV~v~G~-Ey~fg~~~~~~~GI~~~~P~~~~~~~~~ 71 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMW--------LGLQIDGIYHTGVEVYGK-EYAFGGHDDPDSGIFECPPGHTSPGGTP 71 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHH--------CSS-----EEEEEEETTE-EEEEET-----TECEEESTT-STT--S-
T ss_pred CeEEEEEEECccccchhHHHhhHhh--------hCCccCceEEEEEEEccE-EEEecccccccCcceEccCcCCCCCcce
Confidence 48999999999 66666655433 378889999999999999 999998865 48999999998 777799
Q ss_pred EEEEEecceechHHHHHHHHHHhccCCCCCccccccCcccchHHHHHhhcCCCCCChHHHhHHhhhhhHHHhhcccchhh
Q 025261 77 RESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRL 156 (255)
Q Consensus 77 resI~LG~T~~t~~e~~~iL~~L~~~f~g~sYdLL~rNCNHFSdel~~~L~gk~IP~wInRlA~iG~~~~ev~~~~~t~~ 156 (255)
+++|+||+|.+++++|+++|++|+++|.+++||||.||||||||+||++|+|++||+||+|+|+++ + ++|+
T Consensus 72 ~~~i~lG~T~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~------~---~~p~ 142 (151)
T PF05903_consen 72 RESIELGETTLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIA------L---SSPF 142 (151)
T ss_dssp SEEEEEEEE---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHH------H---TSHH
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHh------c---ccch
Confidence 999999999999999999999999999999999999999999999999999999999999999865 3 3899
Q ss_pred hhHHHHHH
Q 025261 157 RQAKTEIV 164 (255)
Q Consensus 157 gq~~~~~i 164 (255)
+|+++||+
T Consensus 143 ~~~l~p~~ 150 (151)
T PF05903_consen 143 GQMLLPML 150 (151)
T ss_dssp HHHHCC--
T ss_pred hhhhCcCC
Confidence 99999986
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=92.34 E-value=0.047 Score=44.02 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=18.1
Q ss_pred echHHHHHHHHHH-hccCCCCCccccccCcccchHHHHH
Q 025261 86 NFSIFKVNQILRE-LSREWPGNSYDLLGRNCNHFCDEFC 123 (255)
Q Consensus 86 ~~t~~e~~~iL~~-L~~~f~g~sYdLL~rNCNHFSdel~ 123 (255)
..+.+++.+-..+ |.+++ .|||+.+||=||+..+.
T Consensus 85 ~~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEhFa~~c~ 120 (125)
T PF04970_consen 85 PFPPEEIVERAESRLGKEF---EYNLLFNNCEHFATWCR 120 (125)
T ss_dssp -S-HHHHHHHHHHTTT-EE---SS---HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCC---ccCCCcCCHHHHHHHHH
Confidence 3444444443333 33344 89999999999997653
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=90.64 E-value=0.5 Score=40.22 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhccCCCCCccccccCcccchHHHHHhhcCC
Q 025261 88 SIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGV 128 (255)
Q Consensus 88 t~~e~~~iL~~L~~~f~g~sYdLL~rNCNHFSdel~~~L~g 128 (255)
+.+..++-|++-.++|....|+|+..||.+|.-.....|.=
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~Y 115 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMRY 115 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhccC
Confidence 56677778888889999999999999999999888888753
No 5
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=83.74 E-value=1.3 Score=42.77 Aligned_cols=74 Identities=18% Similarity=0.329 Sum_probs=42.5
Q ss_pred ceeeeeEEEcCceeEEeccccC----CCceEecCCCCCCCcceEEEEEecceechHHHHHHHHHHhccCCCCCccccccC
Q 025261 38 GIFHSAVQVYGDEEWSFGFCEQ----GSGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGR 113 (255)
Q Consensus 38 GIyHTGVvVyG~eEY~FG~~~~----gsGI~~~~Pg~~p~g~~resI~LG~T~~t~~e~~~iL~~L~~~f~g~sYdLL~r 113 (255)
=+||-+|-|- . -+-+|-|.. +.+-+...|-..+ =+..+.=+-.++.+++.+.+ .+.|+ |..+.+
T Consensus 21 ~~yHYaIYi~-~-G~~lgvh~p~aai~~a~i~l~~ls~~----WRvvy~P~~~~~~~~L~~l~---ge~~P---Y~a~~n 88 (358)
T PF08405_consen 21 DIYHYAIYIG-K-GLVLGVHSPGAAISIATIELEPLSLW----WRVVYTPRQRLSYDQLRKLE---GEKFP---YAAFTN 88 (358)
T ss_pred eeEEEEEEec-C-CeEEeecCcchhceeeeEEEeecccc----cccccCCCCCCCHHHHHHhc---CCCCC---chhhcc
Confidence 4999999994 4 478887753 2344444443322 12222222234444433222 35554 899999
Q ss_pred cccchHHHHHhhc
Q 025261 114 NCNHFCDEFCDRL 126 (255)
Q Consensus 114 NCNHFSdel~~~L 126 (255)
||=||| |+-|
T Consensus 89 NCy~fc---c~vl 98 (358)
T PF08405_consen 89 NCYTFC---CWVL 98 (358)
T ss_pred chHHHh---Hhhc
Confidence 999999 5554
No 6
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=70.29 E-value=5.4 Score=34.80 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=33.9
Q ss_pred eechHHHHHHHHHHhccCCCCC-----------------------ccccccCcccchHHHHHhhcCCC
Q 025261 85 TNFSIFKVNQILRELSREWPGN-----------------------SYDLLGRNCNHFCDEFCDRLGVP 129 (255)
Q Consensus 85 T~~t~~e~~~iL~~L~~~f~g~-----------------------sYdLL~rNCNHFSdel~~~L~gk 129 (255)
..++++++.++++.|+..|.-+ +|+|| ++|||-+++..+....+
T Consensus 96 i~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG~~ 162 (173)
T PF09601_consen 96 IRLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAGLP 162 (173)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcCCC
Confidence 3689999999999887655543 46665 79999999998877654
No 7
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=51.79 E-value=14 Score=31.63 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=40.0
Q ss_pred EEecceechHHHHHHHHHHhcc----CCCCCccccccCcccchHHHHHhhcCCCCCC
Q 025261 80 IVLGKTNFSIFKVNQILRELSR----EWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 132 (255)
Q Consensus 80 I~LG~T~~t~~e~~~iL~~L~~----~f~g~sYdLL~rNCNHFSdel~~~L~gk~IP 132 (255)
|..=...+++++.+.++..|-+ .-.+-.||.|..||=.-.-++.....++.+|
T Consensus 98 v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~ 154 (176)
T PF13387_consen 98 VWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLP 154 (176)
T ss_pred EEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCee
Confidence 3334467899999999887753 2355699999999998888888877766444
No 8
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.87 E-value=26 Score=31.15 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=45.7
Q ss_pred CCcceEEEEEecceec---hHHHHHHHHHHhccCCCCCccccccCcccchHHHHHhhcCCCCCChH
Q 025261 72 PMYTYRESIVLGKTNF---SIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGW 134 (255)
Q Consensus 72 p~g~~resI~LG~T~~---t~~e~~~iL~~L~~~f~g~sYdLL~rNCNHFSdel~~~L~gk~IP~w 134 (255)
..|.|-+-+.|+.+.. .....++.+++-+++|...+|+|+.-||..|-.-...+|.=+.--.|
T Consensus 72 aFG~paRY~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~~s~~W 137 (182)
T KOG3150|consen 72 AFGPPARYIQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYGGSTEW 137 (182)
T ss_pred ccCCcceeEEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcCCCCCc
Confidence 3455556666665542 45678889999999999999999999999998766666654433333
No 9
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=37.47 E-value=1.7e+02 Score=23.55 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=51.3
Q ss_pred ecceechHHHHHHHHHHhccCCCCCccccccC---------cccchHHHHHhhcCCCCCChHHHhHHhhhhhHHHhhccc
Q 025261 82 LGKTNFSIFKVNQILRELSREWPGNSYDLLGR---------NCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTT 152 (255)
Q Consensus 82 LG~T~~t~~e~~~iL~~L~~~f~g~sYdLL~r---------NCNHFSdel~~~L~gk~IP~wInRlA~iG~~~~ev~~~~ 152 (255)
|++..+.++.|......|.+.=.+-.|=.++. --|||+.++.. |-.+-+.++.++..-
T Consensus 1 M~EIkv~e~tf~~~at~L~s~~~~~~y~plK~gnMaysraNsin~~r~Al~d-------------Lv~~Ve~fq~v~~~D 67 (90)
T PF11328_consen 1 MSEIKVNEETFQKHATKLKSKASGVEYLPLKNGNMAYSRANSINQLRTALID-------------LVDVVENFQQVVKKD 67 (90)
T ss_pred CCceehhHHHHHHHHHHHHcccCCcccccccCCCeehhhhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence 67888999999999999986555545544443 34677766654 445556677778777
Q ss_pred chhhhhHHHHHHHhHH
Q 025261 153 ALRLRQAKTEIVSASK 168 (255)
Q Consensus 153 ~t~~gq~~~~~i~~~~ 168 (255)
++++.||=..+..+=+
T Consensus 68 A~RlkkmG~a~~kqD~ 83 (90)
T PF11328_consen 68 ASRLKKMGKAFTKQDQ 83 (90)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887766655443
No 10
>PF00767 Poty_coat: Potyvirus coat protein; InterPro: IPR001592 This protease is found in genome polyproteins of potyviruses. The genome polyprotein contains: N-terminal protein (P1), helper component protease (3.4.22 from EC, HC-PRO), protein P3, 6KD protein (6K1), cytoplasmic inclusion protein (CI), 6KD protein 2 (6K2), genome-linked protein (VPG), nuclear inclusion protein A (3.4.22 from EC), nuclear inclusion protein B (2.7.7.48 from EC) and coat protein (CP). The coat protein is at the C terminus of the polyprotein.; GO: 0019028 viral capsid
Probab=37.33 E-value=18 Score=33.44 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=49.8
Q ss_pred cCcccchHHHHHhhcC-----CCCCChHHHh-------HHhhhhhHHHhhcccchhhhhHHHHH-HHhHHHHHHHHhccc
Q 025261 112 GRNCNHFCDEFCDRLG-----VPKLPGWVNR-------FANAGDAAMEVAGTTALRLRQAKTEI-VSASKVAYRFLAGVA 178 (255)
Q Consensus 112 ~rNCNHFSdel~~~L~-----gk~IP~wInR-------lA~iG~~~~ev~~~~~t~~gq~~~~~-i~~~~~a~~~~~g~~ 178 (255)
++-=-||||....++. .+-+|.|=.. ||+++--|.++-+.|..+.+++..-| ..|....-+-|||..
T Consensus 128 RqIM~hFSd~aeayie~rn~~~~ymPryg~~rnl~d~sla~yaFDFy~~ts~tp~rarEa~~QmKaAAl~~~~~rlfglD 207 (237)
T PF00767_consen 128 RQIMRHFSDAAEAYIEMRNSEEPYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPARAREAHNQMKAAALRGTKNRLFGLD 207 (237)
T ss_pred HHHHHHhhHHHHHHHHHhcccCCchhhhhhhcCCccccccceeeeEeecCCCCCHHHHHHHHHHHHHhhccccCceeeec
Confidence 3344599987777762 4568888632 56666556777766666666665544 334444556788887
Q ss_pred cccCCCCCCCC
Q 025261 179 SNVNGTNGANG 189 (255)
Q Consensus 179 ~~~~~~~~~~~ 189 (255)
-++.+..||+-
T Consensus 208 g~v~~~~edtE 218 (237)
T PF00767_consen 208 GNVGTSEEDTE 218 (237)
T ss_pred CCCCCCccCcc
Confidence 77777776654
No 11
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=36.75 E-value=16 Score=26.78 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCC-CCccccccCcccchHHHHHhhcCCCCCChHHH
Q 025261 92 VNQILRELSREWP-GNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVN 136 (255)
Q Consensus 92 ~~~iL~~L~~~f~-g~sYdLL~rNCNHFSdel~~~L~gk~IP~wIn 136 (255)
+...++++.+.+. ...+.++.=||+....++|+.+....+|.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 36 LAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred hChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 3445555555555 34578888999997789999999999998764
No 12
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=35.24 E-value=41 Score=33.26 Aligned_cols=52 Identities=21% Similarity=0.442 Sum_probs=40.5
Q ss_pred ceechHHHHHHHHHHhccCCCCCccccccCcccchH----HHHHhhcCCCC----CChHHH
Q 025261 84 KTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFC----DEFCDRLGVPK----LPGWVN 136 (255)
Q Consensus 84 ~T~~t~~e~~~iL~~L~~~f~g~sYdLL~rNCNHFS----del~~~L~gk~----IP~wIn 136 (255)
...++.+++++..++|. .-..+.-|++.==|+||| .++++.|-|++ +|-||.
T Consensus 267 ~i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~ 326 (400)
T PF04412_consen 267 RITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWIT 326 (400)
T ss_pred EEEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 35678899999999997 667778899999999999 45666777765 555554
No 13
>TIGR02117 chp_urease_rgn conserved hypothetical protein. This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=30.59 E-value=61 Score=29.21 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=29.8
Q ss_pred eechHHHHHHHHHHhccCCCC------------------------CccccccCcccchHHHHHhhcCC
Q 025261 85 TNFSIFKVNQILRELSREWPG------------------------NSYDLLGRNCNHFCDEFCDRLGV 128 (255)
Q Consensus 85 T~~t~~e~~~iL~~L~~~f~g------------------------~sYdLL~rNCNHFSdel~~~L~g 128 (255)
..++++++.++++-+++.|.- ..|||| ++||+-+.+..+.-+.
T Consensus 126 l~vs~~qy~~L~~~I~~sf~~~~~g~~~~l~~~~yg~~d~Fy~A~G~Y~l~-~TCNtWta~aL~aAGl 192 (208)
T TIGR02117 126 LLVSENQYNRLMDFISASFVRDAEGRVIPLPGGIYGDSDAFYAANGRYNAL-NTCNTWTAAALRSAGL 192 (208)
T ss_pred EEcCHHHHHHHHHHHHHhcCcCCCCCceecCCCCCCCCceeEeeeeeEEee-ccchHHHHHHHHHcCC
Confidence 468899999888877533221 125554 7999999988876544
No 14
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=29.63 E-value=22 Score=35.16 Aligned_cols=42 Identities=10% Similarity=0.195 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcc-CCCCCccccccCcccchHHHHHhhcCCCCC
Q 025261 90 FKVNQILRELSR-EWPGNSYDLLGRNCNHFCDEFCDRLGVPKL 131 (255)
Q Consensus 90 ~e~~~iL~~L~~-~f~g~sYdLL~rNCNHFSdel~~~L~gk~I 131 (255)
+++++.|+-|.. .|+.+.++-|.++|.+|.++|..+|-+=+.
T Consensus 46 ~gl~~~i~~l~~l~ft~eel~yL~~~~~~~~~~fl~~L~~frf 88 (394)
T TIGR01514 46 EALREEISALGNLRFTDDEIEYLKQELPYLKSDYIDYLRNFRF 88 (394)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHhccCCCCHHHHHHHHhCCC
Confidence 678888888875 899999999999999999999999965444
No 15
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=26.56 E-value=59 Score=23.24 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=20.5
Q ss_pred hHHHHHhhcC--CCCCChHHHhHHhhh
Q 025261 118 FCDEFCDRLG--VPKLPGWVNRFANAG 142 (255)
Q Consensus 118 FSdel~~~L~--gk~IP~wInRlA~iG 142 (255)
.|++|-++|. ...+|.||.|+.++|
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G 31 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLG 31 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcC
Confidence 4788888886 446999999998877
No 16
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=22.64 E-value=81 Score=23.11 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=20.5
Q ss_pred hHHHHHhhcC--CCCCChHHHhHHhhh
Q 025261 118 FCDEFCDRLG--VPKLPGWVNRFANAG 142 (255)
Q Consensus 118 FSdel~~~L~--gk~IP~wInRlA~iG 142 (255)
-|++|-++|+ -..+|.||.|+.++|
T Consensus 9 lS~~LR~ALG~~~~~pPPWl~~Mq~~G 35 (54)
T smart00581 9 ISDELREALGLPPGQPPPWLYRMRRLG 35 (54)
T ss_pred CCHHHHHHcCCCCCCCChHHHHHHHHC
Confidence 3788888886 346999999999887
No 17
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=20.74 E-value=1.4e+02 Score=21.84 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHhHHHHHHHHh
Q 025261 155 RLRQAKTEIVSASKVAYRFLA 175 (255)
Q Consensus 155 ~~gq~~~~~i~~~~~a~~~~~ 175 (255)
.+=|+.. =-...|+||||+-
T Consensus 35 Sip~a~~-~wa~tkaAYRF~~ 54 (58)
T PF14706_consen 35 SIPQACQ-DWAETKAAYRFFR 54 (58)
T ss_dssp -HHHHTT--HHHHHHHHHHHT
T ss_pred ccchhcc-CHHHHHHHHHhhc
Confidence 3334443 2457899999985
No 18
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.59 E-value=33 Score=32.30 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=29.8
Q ss_pred CceeEEeccccCCCceEecCCCCCCCcceEEEEEecceechHHHHHHHHHHhccCCCCCccccccCccc
Q 025261 48 GDEEWSFGFCEQGSGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCN 116 (255)
Q Consensus 48 G~eEY~FG~~~~gsGI~~~~Pg~~p~g~~resI~LG~T~~t~~e~~~iL~~L~~~f~g~sYdLL~rNCN 116 (255)
|- +|+|. +-|+.+..-..-| +.|.-+.++-+- +.--+.|.+.-+-.-|.||.+|||
T Consensus 16 ~f-gYaFd----ekGvLr~iktgeP-F~fn~~eD~~en-------qk~ye~Lge~i~~~VYeLLEk~c~ 71 (297)
T KOG3967|consen 16 GF-GYAFD----EKGVLRHIKTGEP-FVFNYREDLHEN-------QKRYEALGEIITKYVYELLEKDCN 71 (297)
T ss_pred hc-ceeec----CcceeeeccCCCC-eEEecHHHHHHh-------HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44 78885 6788876543333 333322222221 112223444444456999999997
No 19
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=20.02 E-value=2.3e+02 Score=23.06 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=30.3
Q ss_pred ceEEEEEecceechHHHHHHHHHHhc-cCCCCCccccccC
Q 025261 75 TYRESIVLGKTNFSIFKVNQILRELS-REWPGNSYDLLGR 113 (255)
Q Consensus 75 ~~resI~LG~T~~t~~e~~~iL~~L~-~~f~g~sYdLL~r 113 (255)
.+.++|.+-..+..++.|.+.|+... +.-.++.|.|..-
T Consensus 15 ~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV 54 (100)
T cd01781 15 RPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEV 54 (100)
T ss_pred CCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEE
Confidence 55679999999999999999998765 4555667776654
Done!