Query 025261
Match_columns 255
No_of_seqs 170 out of 442
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 4.3E-55 1.5E-59 374.7 11.5 146 2-169 7-153 (168)
2 2lkt_A Retinoic acid receptor 93.2 0.021 7.1E-07 45.1 0.7 16 107-122 105-120 (125)
3 4dot_A Group XVI phospholipase 92.7 0.035 1.2E-06 45.9 1.4 32 93-124 90-122 (140)
4 4dpz_X HRAS-like suppressor 2; 92.5 0.031 1.1E-06 46.1 0.8 19 106-124 104-122 (137)
5 1rpq_W Peptide E131; receptor- 34.9 7.3 0.00025 23.4 -0.2 14 114-127 2-15 (26)
6 2wj8_A Nucleoprotein; RNA bind 15.6 77 0.0026 29.8 2.5 43 80-124 270-326 (391)
7 4b4o_A Epimerase family protei 12.9 2.6E+02 0.0087 23.2 4.9 52 88-139 194-252 (298)
8 3utk_A Lipoprotein OUTS; neste 12.5 1.3E+02 0.0046 24.5 2.9 51 82-136 61-114 (133)
9 4at7_B NF90, interleukin enhan 11.8 1.4E+02 0.0048 28.3 3.2 72 87-168 200-282 (383)
10 1wxa_A Afadin, AF-6 protein; R 11.8 4.3E+02 0.015 20.3 5.5 52 61-112 9-61 (116)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=4.3e-55 Score=374.71 Aligned_cols=146 Identities=26% Similarity=0.484 Sum_probs=136.7
Q ss_pred eeEEEEEeeCCCCcccccchhhhhccccccccceecceeeeeEEEcCceeEEeccccCCCceEecCCCCCCCcceEEEEE
Q 025261 2 TDVRLHIYDVTNSGSEKTNNTILNINKIFKDGIGVGGIFHSAVQVYGDEEWSFGFCEQGSGVFSCPSGRNPMYTYRESIV 81 (255)
Q Consensus 2 ~~V~LnVYDLs~g~a~~~s~~ll~lN~~f~~g~gl~GIyHTGVvVyG~eEY~FG~~~~gsGI~~~~Pg~~p~g~~resI~ 81 (255)
.+|+||||||++++++++++.++ |++|+|||||||||||+ ||+|| ++||++++|+.+++++|||+|+
T Consensus 7 ~~V~LnVYDLs~g~a~~~s~~~l--------G~~i~Gi~HtgV~V~G~-EY~FG----~~GI~~~~Pg~~~~g~~resi~ 73 (168)
T 2wp7_A 7 YPVKLYVYDLSKGLARRLSPIML--------GKQLEGIWHTSIVVHKD-EFFFG----SSGISSCTPGGTLLGPPDSVVD 73 (168)
T ss_dssp EEEEEEEEETTTTHHHHHHHHHT--------SSCCCCCEEEEEEETTE-EEEEE----TTEEEEESTTCSTTCSCSEEEE
T ss_pred cEEEEEEEECChHHHHHhhHHHh--------CCCcCcEEEEEEEECCE-EEEEc----CCCeEecCCCcCCCCCeEEEEE
Confidence 57999999999998888876553 89999999999999998 99999 5899999999999999999999
Q ss_pred ecceechHHHHHHHHHHhccC-CCCCccccccCcccchHHHHHhhcCCCCCChHHHhHHhhhhhHHHhhcccchhhhhHH
Q 025261 82 LGKTNFSIFKVNQILRELSRE-WPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAK 160 (255)
Q Consensus 82 LG~T~~t~~e~~~iL~~L~~~-f~g~sYdLL~rNCNHFSdel~~~L~gk~IP~wInRlA~iG~~~~ev~~~~~t~~gq~~ 160 (255)
||+|++++++|+++|++|+++ |++++||||.||||||||+||++|+||+||+||||||+ ++++ ||||||+
T Consensus 74 lG~T~~~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~------~vl~---tp~G~~l 144 (168)
T 2wp7_A 74 VGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPS------EVLS---TPFGQAL 144 (168)
T ss_dssp EEEECCCHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHH------HHHT---SHHHHHH
T ss_pred CCCccCCHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHH------HHhc---CcHHHHH
Confidence 999999999999999999998 99999999999999999999999999999999999985 5675 9999999
Q ss_pred HHHHHhHHH
Q 025261 161 TEIVSASKV 169 (255)
Q Consensus 161 ~~~i~~~~~ 169 (255)
+|||++++.
T Consensus 145 ~~~l~~~~~ 153 (168)
T 2wp7_A 145 RPFLDSIQI 153 (168)
T ss_dssp HHHHTTCCC
T ss_pred HHHHHHHhh
Confidence 999988654
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=93.25 E-value=0.021 Score=45.11 Aligned_cols=16 Identities=38% Similarity=1.061 Sum_probs=14.2
Q ss_pred ccccccCcccchHHHH
Q 025261 107 SYDLLGRNCNHFCDEF 122 (255)
Q Consensus 107 sYdLL~rNCNHFSdel 122 (255)
.||||.+||=||+..+
T Consensus 105 ~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 105 KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CcCCCccCHHHHHhhh
Confidence 6999999999999654
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=92.72 E-value=0.035 Score=45.90 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=21.8
Q ss_pred HHHHHHhccCCC-CCccccccCcccchHHHHHh
Q 025261 93 NQILRELSREWP-GNSYDLLGRNCNHFCDEFCD 124 (255)
Q Consensus 93 ~~iL~~L~~~f~-g~sYdLL~rNCNHFSdel~~ 124 (255)
++++++....-. -..|+||.+||-||+..+..
T Consensus 90 ~~iv~rA~~~lG~e~~Y~ll~nNCEHFvt~cr~ 122 (140)
T 4dot_A 90 SKIIQRAEELVGQEVLYKLTSENCEHFVNELRY 122 (140)
T ss_dssp HHHHHHHHHTTTCBCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccccChHHHHHHHhc
Confidence 344444432222 36999999999999987754
No 4
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=92.47 E-value=0.031 Score=46.07 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=11.6
Q ss_pred CccccccCcccchHHHHHh
Q 025261 106 NSYDLLGRNCNHFCDEFCD 124 (255)
Q Consensus 106 ~sYdLL~rNCNHFSdel~~ 124 (255)
..|+||.+||-||+..+..
T Consensus 104 ~~Y~ll~nNCEHFvt~cry 122 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHLRY 122 (137)
T ss_dssp EC-----CHHHHHHHHHHH
T ss_pred cccCcCccChHHHHHHHhc
Confidence 4899999999999987754
No 5
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=34.91 E-value=7.3 Score=23.35 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=11.0
Q ss_pred cccchHHHHHhhcC
Q 025261 114 NCNHFCDEFCDRLG 127 (255)
Q Consensus 114 NCNHFSdel~~~L~ 127 (255)
.|.|||-++--.|+
T Consensus 2 qcphfcyeldyelc 15 (26)
T 1rpq_W 2 QCPHFCYELDYELC 15 (26)
T ss_dssp CCCTHHHHSSSCCS
T ss_pred CCCeeeeecCcccC
Confidence 59999988766665
No 6
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=15.60 E-value=77 Score=29.75 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=25.8
Q ss_pred EEecceech-----HHHHHHHHHHhccCCCCCcccccc---------CcccchHHHHHh
Q 025261 80 IVLGKTNFS-----IFKVNQILRELSREWPGNSYDLLG---------RNCNHFCDEFCD 124 (255)
Q Consensus 80 I~LG~T~~t-----~~e~~~iL~~L~~~f~g~sYdLL~---------rNCNHFSdel~~ 124 (255)
|-||...+- .-||.+++++|..+ ..-|||.. -||+||+.-+.-
T Consensus 270 imlgh~svqae~~qv~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLG 326 (391)
T 2wj8_A 270 IMLGHASVQAEMEQVVEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheec
Confidence 446665432 23566778888643 22355544 599999976543
No 7
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=12.91 E-value=2.6e+02 Score=23.22 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=32.0
Q ss_pred hHHHHHHHH-HHhccCCCCCccccccCcccc---hHHHHHhhcCCC---CCChHHHhHH
Q 025261 88 SIFKVNQIL-RELSREWPGNSYDLLGRNCNH---FCDEFCDRLGVP---KLPGWVNRFA 139 (255)
Q Consensus 88 t~~e~~~iL-~~L~~~f~g~sYdLL~rNCNH---FSdel~~~L~gk---~IP~wInRlA 139 (255)
..+++.+.+ .-+...=....||+-..+.-. |.+.+++.|.-+ ++|.|+.|++
T Consensus 194 hv~Dva~a~~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~ 252 (298)
T 4b4o_A 194 HIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAV 252 (298)
T ss_dssp EHHHHHHHHHHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCCcccCCHHHHHHH
Confidence 345555444 444443344589998776544 556777776533 5899998865
No 8
>3utk_A Lipoprotein OUTS; nested (perpendicular) alpha-helical hairpins, protein trans pilot protein; 1.65A {Dickeya dadantii} PDB: 3uym_A
Probab=12.53 E-value=1.3e+02 Score=24.48 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=41.3
Q ss_pred ecceechHHH-HHHHHHHhc--cCCCCCccccccCcccchHHHHHhhcCCCCCChHHH
Q 025261 82 LGKTNFSIFK-VNQILRELS--REWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVN 136 (255)
Q Consensus 82 LG~T~~t~~e-~~~iL~~L~--~~f~g~sYdLL~rNCNHFSdel~~~L~gk~IP~wIn 136 (255)
-|..++|.++ +.+.+-.+. +.|.-..|+.+.+. +++.-+.|.+-.+|....
T Consensus 61 CgrsDiPd~~~I~r~av~~A~~rgWD~s~y~~l~~~----se~~Yq~L~~d~~p~~~K 114 (133)
T 3utk_A 61 CERSDLPDDGTILKTAVNVAVQKGWDTGRYQSLPQL----SENLYQGLLKDGTPKATQ 114 (133)
T ss_dssp SCCTTSCCHHHHHHHHHHHHHHTTCCTTSCTTSHHH----HHHHHHHHHHSSCCHHHH
T ss_pred CCCccCCcHHHHHHHHHHHHHHcCCCchhhHHHHHH----HHHHHHHHhccCCCcchH
Confidence 4778888888 776666553 79999999998776 888889999999997765
No 9
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=11.84 E-value=1.4e+02 Score=28.30 Aligned_cols=72 Identities=15% Similarity=0.330 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhcc-CCCCCccccccCcccchH---------HHHHhhcCC-CCCChHHHhHHhhhhhHHHhhcccchh
Q 025261 87 FSIFKVNQILRELSR-EWPGNSYDLLGRNCNHFC---------DEFCDRLGV-PKLPGWVNRFANAGDAAMEVAGTTALR 155 (255)
Q Consensus 87 ~t~~e~~~iL~~L~~-~f~g~sYdLL~rNCNHFS---------del~~~L~g-k~IP~wInRlA~iG~~~~ev~~~~~t~ 155 (255)
++.+.+...|..|+. .| |..||||.. .++|++-.+ .++|.|...| ++..+.+. .+....
T Consensus 200 Ld~~~cl~aLAalRhAkW-------Fqara~~l~s~~ilIRilkdlc~R~~~~~pL~~waLEL--L~~~ai~s-~~~~l~ 269 (383)
T 4at7_B 200 LDRQKCLAALASLRHAKW-------FQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLEL--LCEKSIGT-ANRPMG 269 (383)
T ss_dssp CCHHHHHHHHHHHHHHHH-------CCCCCTTSTTHHHHHHHHHHHHHHCGGGGGGTTHHHHH--HHHHHHHT-SSSCCC
T ss_pred CCHHHHHHHHHHhhhhHH-------HHHhcccCCCceEEeehhhHHHHhcCCcCCCcHhHHHH--HHHHHhhC-CCCCCC
Confidence 556666777777763 44 456777752 335555445 7899998866 23444443 334566
Q ss_pred hhhHHHHHHHhHH
Q 025261 156 LRQAKTEIVSASK 168 (255)
Q Consensus 156 ~gq~~~~~i~~~~ 168 (255)
.|+++|.+++...
T Consensus 270 ~~~afRRVLElla 282 (383)
T 4at7_B 270 AGEALRRVLECLA 282 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6888888776643
No 10
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=11.80 E-value=4.3e+02 Score=20.32 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=35.1
Q ss_pred CceEecCCCCCCCcceEEEEEecceechHHHHHHHHHHhc-cCCCCCcccccc
Q 025261 61 SGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELS-REWPGNSYDLLG 112 (255)
Q Consensus 61 sGI~~~~Pg~~p~g~~resI~LG~T~~t~~e~~~iL~~L~-~~f~g~sYdLL~ 112 (255)
.|+..+-|+.---+.+.++|.+-..+...+.|.+.|+.+. +.-..+.|-|..
T Consensus 9 ~g~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~Lve 61 (116)
T 1wxa_A 9 GGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIAR 61 (116)
T ss_dssp CCEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEE
T ss_pred CeEEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEE
Confidence 3555554544333456678999999999999999998875 344556666644
Done!