BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025262
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E2L|A Chain A, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
 pdb|4E2L|B Chain B, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
 pdb|4E2L|C Chain C, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
 pdb|4E2L|D Chain D, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
 pdb|4E2L|E Chain E, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
 pdb|4E2L|F Chain F, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
 pdb|4E2L|G Chain G, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
 pdb|4E2L|H Chain H, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
 pdb|4E2L|I Chain I, Crystal Structure Of The Periplasmic Domain Of Mutant Fepe
           Lps O- Antigen Chain Length Regulator Protein
          Length = 271

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 99  NYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDG 158
           NYS+D  + AG+      S   P F +S+ AD      GI  ER   +E +  DVA  +G
Sbjct: 185 NYSLDIANAAGIKKPVYGSGDDPDFSISLGAD------GI--ERKLEIEKAVTDVAELNG 236

Query: 159 E 159
           E
Sbjct: 237 E 237


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,718,068
Number of Sequences: 62578
Number of extensions: 245720
Number of successful extensions: 520
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 4
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)