BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025262
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 88 VFYLVFRPESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVE 147
+ YL RP+ Y+V+ S+ + + ++ +F + + NP + + Y +
Sbjct: 57 ITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYH-SMRIS 115
Query: 148 VSYKDVALCDGEWPQFYQPSNNVTVFKTLLKGSSIELTSAMRKDLVAAQTSGKTVPFKVN 207
++ + ++ F Q N T +T L ++ L+ +DL A ++ G +
Sbjct: 116 TAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKG-----TIE 170
Query: 208 LRVPVKIKVGSVKTWTIKVKVR 229
+ V + +V S KTW + + R
Sbjct: 171 MEVYITARV-SYKTWIFRSRRR 191
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 92 VFRPESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYK 151
+ R + V + +L S +++ ++++ N IGI+Y+R + V Y
Sbjct: 1 MVRSNDVKFQVYDAELTHFDLESNNNL-QYSLSLNLSIRNSKSSIGIHYDRFEAT-VYYM 58
Query: 152 DVALCDGEWPQFYQPSNNVTVFKTLLKGSSIELTSA-MRKDLVAAQTSGKTVPFKVNLRV 210
+ L P FY S N + + L +G ++ L RK Q +G V L +
Sbjct: 59 NQRLGAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTG-VYRIDVKLSI 117
Query: 211 PVKIKVGSVKTWTIKVKVRCDLTV 234
++ V + TW +K VRC L +
Sbjct: 118 NFRVMVLHLVTWPMKPVVRCHLKI 141
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 53/214 (24%)
Query: 69 RFCCCSLLLLVLLLAIAAGVFYLVFRPESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVT 128
R CC L + + + +L R + P S+ I L P+S + + V
Sbjct: 12 RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALG-KDPNSRDNTTLNFMVR 70
Query: 129 ADNPNDKIGIYYERGSSVEVSYKDVALCD---------GEW--PQFYQ------------ 165
DNPN GIYY+ V +++ + G + P+FYQ
Sbjct: 71 CDNPNKDKGIYYD---DVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQV 127
Query: 166 -PSNNVTVFKTLL-KGSSIELTSAMRKDLVAAQTSGKTVPFKVNLRVPVKIKVGSVKTWT 223
P NN TV + +L GS++ F+++L+ V+ K+ KT
Sbjct: 128 KPLNNQTVLRAVLPNGSAV---------------------FRLDLKTQVRFKIVFWKTKR 166
Query: 224 IKVKVRCDLTV--DKLTSQSK-IVSKDCDYSVKL 254
V+V D+ V D + +Q K I K D S L
Sbjct: 167 YGVEVGADVEVNGDGVKAQKKGIKMKKSDSSFPL 200
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1
Length = 659
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 59 KSRSTTCCCF-RFCCCSLLLLVLLLAIAAGVFYLVFRPES 97
+ ++++CCCF +F LLL +LL +A +F +++ PE+
Sbjct: 58 QDKNSSCCCFTKFQIVKLLLFILL---SATLFTIIYSPEA 94
>sp|Q66098|CAPSD_CRSVL Capsid protein OS=Carnation ringspot virus (isolate Lommel) GN=ORF2
PE=3 SV=1
Length = 345
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 143 GSSVEVSYKDVA--LCDGEWPQFYQPSNNVTVFKTLLKGSSIELTSAMRKDLVAAQTSGK 200
S V+ +Y DV+ L E P+++ PS++VT F + + S++L+ +V T+
Sbjct: 216 ASMVQTAYWDVSGVLAKSEGPRYFSPSSDVT-FTSTMAAISLQLSGIFNVQVVVTCTTAG 274
Query: 201 TVPFKVNLRV 210
T+ N+ V
Sbjct: 275 TLVVGPNISV 284
>sp|P23565|AINX_RAT Alpha-internexin OS=Rattus norvegicus GN=Ina PE=1 SV=2
Length = 505
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 75 LLLLVLLLAIAAGVFYLVFRPESPNYSVDGVSIAGLN-LTSPSSVVSPRFDVSVTA 129
LL + + L I + + E +S G+SI+GLN L +PS ++ PR S T+
Sbjct: 382 LLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPLPNPSYLLPPRILSSTTS 437
>sp|Q08DH7|AINX_BOVIN Alpha-internexin OS=Bos taurus GN=INA PE=2 SV=1
Length = 499
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 75 LLLLVLLLAIAAGVFYLVFRPESPNYSVDGVSIAGLN-LTSPSSVVSPRFDVSVTA 129
LL + + L I + + E +S G+SI+GLN L +PS ++ PR S T+
Sbjct: 382 LLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPLPNPSYLLPPRILSSTTS 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,406,384
Number of Sequences: 539616
Number of extensions: 3659970
Number of successful extensions: 10838
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10835
Number of HSP's gapped (non-prelim): 14
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)