Query 025262
Match_columns 255
No_of_seqs 203 out of 869
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 5.2E-39 1.1E-43 276.1 26.3 184 61-254 33-219 (219)
2 PF03168 LEA_2: Late embryogen 99.4 5.7E-13 1.2E-17 100.1 9.3 98 126-231 1-100 (101)
3 smart00769 WHy Water Stress an 98.6 7.4E-07 1.6E-11 67.4 10.5 87 117-210 11-98 (100)
4 PF07092 DUF1356: Protein of u 97.7 0.0019 4.1E-08 56.0 15.0 83 95-179 98-181 (238)
5 PF12751 Vac7: Vacuolar segreg 97.7 0.00035 7.6E-09 64.2 10.0 70 77-156 312-381 (387)
6 COG5608 LEA14-like dessication 97.5 0.0077 1.7E-07 48.6 14.9 104 96-211 31-135 (161)
7 PLN03160 uncharacterized prote 96.0 0.095 2.1E-06 45.2 10.6 110 57-177 32-152 (219)
8 PF14155 DUF4307: Domain of un 82.7 16 0.00034 28.0 8.9 31 147-180 69-101 (112)
9 PRK05529 cell division protein 81.8 2.8 6.1E-05 36.9 5.1 15 97-111 58-72 (255)
10 TIGR03602 streptolysinS bacter 78.9 0.4 8.7E-06 31.1 -0.9 8 61-68 24-31 (56)
11 KOG3950 Gamma/delta sarcoglyca 76.8 4.7 0.0001 35.2 4.7 21 118-138 105-125 (292)
12 PRK07021 fliL flagellar basal 76.8 7.4 0.00016 31.8 5.8 17 138-155 78-94 (162)
13 COG1580 FliL Flagellar basal b 74.5 8.1 0.00018 31.7 5.4 27 68-94 17-43 (159)
14 TIGR02588 conserved hypothetic 74.3 12 0.00026 29.3 5.9 53 74-134 8-62 (122)
15 PRK13150 cytochrome c-type bio 71.5 24 0.00052 28.9 7.4 15 180-194 131-145 (159)
16 PF09911 DUF2140: Uncharacteri 69.8 5.6 0.00012 33.4 3.5 29 70-98 3-31 (187)
17 PRK10893 lipopolysaccharide ex 68.1 33 0.00072 28.8 7.9 21 94-114 37-57 (192)
18 PF07423 DUF1510: Protein of u 67.4 3.4 7.3E-05 35.6 1.7 9 189-197 152-160 (217)
19 PF09624 DUF2393: Protein of u 66.2 42 0.0009 26.7 7.8 63 85-158 33-97 (149)
20 PF09604 Potass_KdpF: F subuni 66.0 2.9 6.2E-05 23.4 0.7 22 76-97 3-24 (25)
21 PHA03054 IMV membrane protein; 65.7 4.7 0.0001 28.3 1.8 26 66-91 44-69 (72)
22 PHA02650 hypothetical protein; 65.6 4.6 0.0001 29.0 1.8 27 65-91 44-70 (81)
23 PHA02819 hypothetical protein; 65.5 4.8 0.0001 28.2 1.8 26 66-91 42-67 (71)
24 PRK13183 psbN photosystem II r 64.5 10 0.00022 24.4 3.0 24 72-95 9-32 (46)
25 PF12273 RCR: Chitin synthesis 64.4 3.3 7.1E-05 32.5 1.0 9 70-78 2-10 (130)
26 PHA02844 putative transmembran 64.1 5.4 0.00012 28.3 1.9 27 65-91 43-69 (75)
27 PF12505 DUF3712: Protein of u 63.4 67 0.0014 24.7 9.0 69 154-228 2-71 (125)
28 COG4698 Uncharacterized protei 62.3 6.6 0.00014 32.8 2.4 43 70-114 13-58 (197)
29 CHL00020 psbN photosystem II p 61.6 11 0.00023 23.9 2.7 24 72-95 6-29 (43)
30 PRK13159 cytochrome c-type bio 60.8 77 0.0017 25.9 8.3 16 180-195 124-139 (155)
31 KOG4331 Polytopic membrane pro 60.6 5.9 0.00013 40.3 2.2 26 71-96 153-178 (865)
32 PHA02975 hypothetical protein; 58.4 8.3 0.00018 26.9 2.0 26 66-91 40-65 (69)
33 PRK14759 potassium-transportin 57.8 5.3 0.00011 23.1 0.8 22 76-97 7-28 (29)
34 PF11395 DUF2873: Protein of u 57.7 6.6 0.00014 24.0 1.2 21 74-94 13-33 (43)
35 TIGR02115 potass_kdpF K+-trans 57.5 2.5 5.3E-05 23.9 -0.6 21 77-97 3-23 (26)
36 cd01324 cbb3_Oxidase_CcoQ Cyto 57.1 6.9 0.00015 25.4 1.4 25 73-97 11-35 (48)
37 PRK08455 fliL flagellar basal 57.0 15 0.00032 30.8 3.7 15 139-154 103-117 (182)
38 PF02468 PsbN: Photosystem II 56.0 9.7 0.00021 24.2 1.9 23 73-95 7-29 (43)
39 PF05545 FixQ: Cbb3-type cytoc 53.3 6.1 0.00013 25.5 0.7 22 76-97 13-34 (49)
40 PF08999 SP_C-Propep: Surfacta 52.8 9.5 0.00021 27.6 1.6 15 52-66 15-29 (93)
41 PRK06531 yajC preprotein trans 52.2 6 0.00013 30.6 0.6 13 85-97 12-24 (113)
42 PRK05696 fliL flagellar basal 50.0 32 0.0007 28.2 4.7 16 138-154 86-101 (170)
43 PF15482 CCER1: Coiled-coil do 49.0 4.9 0.00011 33.3 -0.4 11 61-71 111-121 (214)
44 PHA02692 hypothetical protein; 48.1 13 0.00028 26.1 1.6 24 67-90 42-66 (70)
45 PRK01844 hypothetical protein; 48.0 18 0.00039 25.6 2.4 21 70-90 4-24 (72)
46 COG3763 Uncharacterized protei 47.7 18 0.0004 25.4 2.4 20 69-88 3-22 (71)
47 PHA03049 IMV membrane protein; 47.2 9.5 0.00021 26.4 0.9 23 73-95 3-25 (68)
48 COG5294 Uncharacterized protei 47.1 63 0.0014 24.8 5.4 19 117-135 48-66 (113)
49 PF11906 DUF3426: Protein of u 47.1 93 0.002 24.5 6.8 57 101-160 49-106 (149)
50 PF12575 DUF3753: Protein of u 46.8 22 0.00048 25.1 2.7 25 67-91 45-69 (72)
51 PF09307 MHC2-interact: CLIP, 46.6 6.5 0.00014 30.4 0.0 33 62-95 26-58 (114)
52 PF10907 DUF2749: Protein of u 46.2 25 0.00055 24.3 2.8 16 81-96 13-28 (66)
53 COG4736 CcoQ Cbb3-type cytochr 46.1 12 0.00025 25.6 1.1 21 77-97 14-34 (60)
54 PF12751 Vac7: Vacuolar segreg 45.9 20 0.00043 33.5 3.0 22 67-88 305-326 (387)
55 PRK12785 fliL flagellar basal 45.4 51 0.0011 27.0 5.1 17 138-155 86-102 (166)
56 PF03100 CcmE: CcmE; InterPro 44.5 31 0.00067 27.1 3.6 8 145-152 83-90 (131)
57 PF05961 Chordopox_A13L: Chord 44.5 11 0.00023 26.3 0.8 23 73-95 3-25 (68)
58 PRK00523 hypothetical protein; 44.4 22 0.00048 25.1 2.4 21 70-90 5-25 (72)
59 PF06092 DUF943: Enterobacteri 42.9 16 0.00036 29.8 1.8 17 79-95 12-28 (157)
60 PF12505 DUF3712: Protein of u 40.5 73 0.0016 24.5 5.1 22 120-142 99-120 (125)
61 PF04478 Mid2: Mid2 like cell 39.7 22 0.00049 28.9 2.1 21 79-99 61-81 (154)
62 PF07787 DUF1625: Protein of u 39.7 30 0.00064 30.2 3.1 13 83-95 236-248 (248)
63 PF15012 DUF4519: Domain of un 39.6 34 0.00073 23.0 2.6 20 77-96 37-56 (56)
64 PF14283 DUF4366: Domain of un 38.8 27 0.00059 30.1 2.6 23 78-100 168-190 (218)
65 COG5353 Uncharacterized protei 38.2 15 0.00033 29.7 0.9 29 68-96 6-34 (161)
66 PF09753 Use1: Membrane fusion 38.1 30 0.00065 30.2 2.9 9 67-75 228-236 (251)
67 PF05478 Prominin: Prominin; 37.9 20 0.00043 36.9 1.9 24 64-87 137-160 (806)
68 COG2332 CcmE Cytochrome c-type 37.6 47 0.001 26.9 3.6 29 131-160 80-109 (153)
69 PTZ00116 signal peptidase; Pro 37.4 2E+02 0.0042 24.3 7.4 53 95-152 36-93 (185)
70 COG3671 Predicted membrane pro 36.8 16 0.00034 28.4 0.8 31 64-94 70-103 (125)
71 PF15145 DUF4577: Domain of un 35.9 29 0.00063 26.7 2.0 25 71-95 64-88 (128)
72 PF08113 CoxIIa: Cytochrome c 35.3 19 0.00041 21.5 0.8 14 78-91 11-24 (34)
73 PF14927 Neurensin: Neurensin 35.3 54 0.0012 26.3 3.6 11 78-88 53-63 (140)
74 PF10164 DUF2367: Uncharacteri 34.2 1.3E+02 0.0028 22.6 5.2 16 67-85 66-81 (98)
75 PRK14740 kdbF potassium-transp 33.6 19 0.0004 20.8 0.5 21 77-97 8-28 (29)
76 COG1589 FtsQ Cell division sep 33.5 46 0.001 29.3 3.3 31 79-109 39-69 (269)
77 PF14654 Epiglycanin_C: Mucin, 33.3 49 0.0011 24.9 2.8 22 71-92 21-42 (106)
78 PF15050 SCIMP: SCIMP protein 33.0 21 0.00046 27.8 0.9 25 69-94 8-32 (133)
79 PF03929 PepSY_TM: PepSY-assoc 32.8 56 0.0012 18.5 2.4 20 70-89 7-26 (27)
80 PF02009 Rifin_STEVOR: Rifin/s 32.7 20 0.00044 32.4 0.9 22 73-94 259-280 (299)
81 PF04573 SPC22: Signal peptida 32.7 2.1E+02 0.0046 23.7 6.9 12 93-104 32-43 (175)
82 PF09125 COX2-transmemb: Cytoc 31.5 77 0.0017 19.4 2.9 16 70-85 16-31 (38)
83 PF13396 PLDc_N: Phospholipase 31.1 54 0.0012 20.4 2.5 19 78-96 28-46 (46)
84 PF01102 Glycophorin_A: Glycop 30.0 23 0.0005 27.7 0.7 25 80-104 76-101 (122)
85 PF04906 Tweety: Tweety; Inte 29.4 55 0.0012 30.9 3.2 20 64-84 58-77 (406)
86 PF05170 AsmA: AsmA family; I 29.3 1.7E+02 0.0036 28.7 6.8 70 99-186 441-510 (604)
87 PF06919 Phage_T4_Gp30_7: Phag 28.9 1.1E+02 0.0023 23.4 4.0 34 131-165 40-73 (121)
88 PTZ00201 amastin surface glyco 28.8 54 0.0012 27.7 2.8 12 65-76 102-113 (192)
89 PF05478 Prominin: Prominin; 28.7 56 0.0012 33.7 3.4 16 22-37 57-72 (806)
90 PF01102 Glycophorin_A: Glycop 28.6 27 0.00059 27.3 0.9 20 75-94 68-87 (122)
91 KOG2927 Membrane component of 28.5 36 0.00077 31.5 1.7 24 71-94 228-251 (372)
92 PF11239 DUF3040: Protein of u 28.3 45 0.00098 23.8 2.0 9 44-52 23-31 (82)
93 PF11837 DUF3357: Domain of un 27.8 20 0.00043 27.2 0.0 12 77-88 37-48 (106)
94 TIGR01655 yxeA_fam conserved h 27.4 2.7E+02 0.0059 21.2 6.3 12 123-134 55-66 (114)
95 PF15330 SIT: SHP2-interacting 27.4 44 0.00096 25.5 1.8 24 70-93 1-25 (107)
96 PF11770 GAPT: GRB2-binding ad 27.1 78 0.0017 25.7 3.2 29 74-102 15-43 (158)
97 PHA03292 envelope glycoprotein 26.5 1.2E+02 0.0025 28.5 4.7 15 33-47 278-292 (413)
98 COG5009 MrcA Membrane carboxyp 26.4 35 0.00077 34.7 1.4 34 68-101 5-38 (797)
99 PF14221 DUF4330: Domain of un 26.1 3.7E+02 0.008 22.0 10.8 20 75-94 19-38 (168)
100 PF06024 DUF912: Nucleopolyhed 25.9 87 0.0019 23.4 3.2 19 76-94 69-88 (101)
101 PF13807 GNVR: G-rich domain o 25.1 32 0.0007 24.4 0.7 14 79-92 65-78 (82)
102 PF12321 DUF3634: Protein of u 25.1 33 0.00072 26.3 0.8 16 87-102 11-28 (108)
103 PHA02902 putative IMV membrane 24.6 30 0.00064 23.9 0.4 21 75-95 6-26 (70)
104 PRK14758 hypothetical protein; 24.4 76 0.0016 17.9 1.9 19 73-91 8-26 (27)
105 PRK07718 fliL flagellar basal 24.3 64 0.0014 25.6 2.4 14 140-154 64-77 (142)
106 PF06637 PV-1: PV-1 protein (P 24.2 83 0.0018 29.5 3.2 16 117-132 82-97 (442)
107 PRK10927 essential cell divisi 24.0 1.7E+02 0.0036 26.8 5.1 14 185-198 257-270 (319)
108 PF06692 MNSV_P7B: Melon necro 24.0 34 0.00073 22.9 0.6 9 92-100 31-39 (61)
109 PRK05886 yajC preprotein trans 24.0 27 0.00059 26.8 0.1 13 85-97 14-26 (109)
110 PF04790 Sarcoglycan_1: Sarcog 23.9 5.1E+02 0.011 23.0 11.9 18 118-135 83-100 (264)
111 KOG3202 SNARE protein TLG1/Syn 23.9 67 0.0014 28.1 2.5 11 67-77 213-223 (235)
112 PF11044 TMEMspv1-c74-12: Plec 23.9 41 0.00089 21.5 0.9 19 74-92 7-25 (49)
113 KOG4298 CAP-binding protein co 23.8 1.1E+02 0.0024 25.9 3.7 31 68-98 148-179 (245)
114 COG2991 Uncharacterized protei 23.5 92 0.002 22.1 2.7 19 70-88 4-22 (77)
115 PRK10775 cell division protein 23.2 91 0.002 27.8 3.3 14 96-109 52-65 (276)
116 PF14257 DUF4349: Domain of un 22.6 87 0.0019 27.3 3.1 15 80-94 248-262 (262)
117 PF14828 Amnionless: Amnionles 22.5 45 0.00097 31.9 1.3 27 74-100 343-369 (437)
118 PF06129 Chordopox_G3: Chordop 22.5 1.4E+02 0.003 22.9 3.7 31 123-153 51-86 (109)
119 PF10296 DUF2404: Putative int 22.4 2.6E+02 0.0057 20.1 5.2 22 97-119 34-55 (91)
120 PTZ00382 Variant-specific surf 22.3 55 0.0012 24.4 1.5 14 80-93 78-91 (96)
121 PF12911 OppC_N: N-terminal TM 22.0 1.4E+02 0.0029 19.2 3.3 17 73-89 22-38 (56)
122 PF15099 PIRT: Phosphoinositid 21.2 41 0.0009 26.4 0.6 30 76-105 56-85 (129)
123 PF07184 CTV_P33: Citrus trist 21.2 36 0.00078 29.0 0.3 60 26-89 242-302 (303)
124 PF04834 Adeno_E3_14_5: Early 20.9 1E+02 0.0022 23.1 2.6 24 68-91 22-45 (97)
125 PF13179 DUF4006: Family of un 20.7 75 0.0016 22.1 1.8 22 71-92 13-34 (66)
126 PF07856 Orai-1: Mediator of C 20.7 89 0.0019 26.0 2.6 29 68-96 108-136 (175)
127 KOG1773 Stress responsive prot 20.6 2E+02 0.0044 19.8 3.9 32 65-96 29-60 (63)
128 PRK07718 fliL flagellar basal 20.3 3.4E+02 0.0073 21.5 5.8 12 122-133 66-77 (142)
129 PF06667 PspB: Phage shock pro 20.1 41 0.0009 24.0 0.4 11 83-93 14-24 (75)
130 PF10177 DUF2371: Uncharacteri 20.0 1.2E+02 0.0027 24.3 3.2 18 77-96 47-64 (141)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=5.2e-39 Score=276.09 Aligned_cols=184 Identities=20% Similarity=0.312 Sum_probs=155.8
Q ss_pred CCceeehhhHHHHHHHHHHHHHHHHHheeeeeecCCCCEEEEeeeEEeeeecCCC---CceeceEEEEEEEEeCCCCeEE
Q 025262 61 RSTTCCCFRFCCCSLLLLVLLLAIAAGVFYLVFRPESPNYSVDGVSIAGLNLTSP---SSVVSPRFDVSVTADNPNDKIG 137 (255)
Q Consensus 61 ~~~~c~c~~~~~~~ll~l~ll~gi~~~i~~lvlrP~~P~fsV~s~~v~~~~~~~~---~~~ls~~~~~tl~a~NPN~~~~ 137 (255)
|++||+||+|++++++ ++++++++++|++||||.|+|+|++++|++|+++.. +..+|++++++|+++|||. ++
T Consensus 33 r~~~~~c~~~~~a~~l---~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~ 108 (219)
T PLN03160 33 RRNCIKCCGCITATLL---ILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-AS 108 (219)
T ss_pred cccceEEHHHHHHHHH---HHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-ee
Confidence 3444555454544333 447777888999999999999999999999998642 3567888888899999996 89
Q ss_pred EEECCCeEEEEEECCEEeeccCCCcceecCCCeEEEEEEEEEcccccCHHHHHHHHHHHhCCCeEEEEEEEEeEEEEEEc
Q 025262 138 IYYERGSSVEVSYKDVALCDGEWPQFYQPSNNVTVFKTLLKGSSIELTSAMRKDLVAAQTSGKTVPFKVNLRVPVKIKVG 217 (255)
Q Consensus 138 i~Y~~~~~~~v~Y~g~~lg~~~vP~F~q~~~n~t~~~~~l~~~~~~l~~~~~~~L~~d~~~g~~v~l~v~v~~~vr~kvg 217 (255)
|+|++ ++++++|+|+.+|++.+|+|+|++++++.+.+++...+..+.++ .+|.+|+.+| .++|++.+++++|+++|
T Consensus 109 ~~Y~~-~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G-~v~l~~~~~v~gkVkv~ 184 (219)
T PLN03160 109 FKYSN-TTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSG-LLNMNSYTRIGGKVKIL 184 (219)
T ss_pred EEEcC-eEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCC-eEEEEEEEEEEEEEEEE
Confidence 99997 99999999999999999999999999999999987665544332 5699999999 99999999999999999
Q ss_pred eEEEeeeEEEEEEEEEecccCCCceeecCCceeeeec
Q 025262 218 SVKTWTIKVKVRCDLTVDKLTSQSKIVSKDCDYSVKL 254 (255)
Q Consensus 218 ~~~t~~~~v~v~C~l~v~~~~~~~~i~~~~C~~~~~~ 254 (255)
+++++++.++++|++.|+. ++.++++++|+.+++|
T Consensus 185 ~i~k~~v~~~v~C~v~V~~--~~~~i~~~~C~~~~~~ 219 (219)
T PLN03160 185 KIIKKHVVVKMNCTMTVNI--TSQAIQGQKCKRHVDL 219 (219)
T ss_pred EEEEEEEEEEEEeEEEEEC--CCCEEeccEecccccC
Confidence 9999999999999999987 3468999999999864
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.44 E-value=5.7e-13 Score=100.05 Aligned_cols=98 Identities=28% Similarity=0.475 Sum_probs=73.3
Q ss_pred EEEEeCCCCeEEEEECCCeEEEEEECCEEee-ccCCCcceecCCCeEEEEEEEEEcccccCHHHHHHHHHHHhCCCeEEE
Q 025262 126 SVTADNPNDKIGIYYERGSSVEVSYKDVALC-DGEWPQFYQPSNNVTVFKTLLKGSSIELTSAMRKDLVAAQTSGKTVPF 204 (255)
Q Consensus 126 tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg-~~~vP~F~q~~~n~t~~~~~l~~~~~~l~~~~~~~L~~d~~~g~~v~l 204 (255)
+|+++|||. ++++|++ +++.++|+|..+| .+..++|+|++++++.+.+.+..+...+ .+.+.++. +| ..++
T Consensus 1 ~l~v~NPN~-~~i~~~~-~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~-~~~~ 72 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDS-IEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AG-RVPF 72 (101)
T ss_dssp EEEEEESSS-S-EEEEE-EEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HT-TSCE
T ss_pred CEEEECCCc-eeEEEeC-EEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-cc-ccce
Confidence 689999997 9999998 9999999999999 6788999999999999999888765444 45566666 55 6778
Q ss_pred EEEEEeEEEEEE-ceEEEeeeEEEEEEE
Q 025262 205 KVNLRVPVKIKV-GSVKTWTIKVKVRCD 231 (255)
Q Consensus 205 ~v~v~~~vr~kv-g~~~t~~~~v~v~C~ 231 (255)
++.+++++++++ +.....+..+.++|+
T Consensus 73 ~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 73 DVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 888888888884 333223444444443
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.58 E-value=7.4e-07 Score=67.37 Aligned_cols=87 Identities=23% Similarity=0.325 Sum_probs=69.4
Q ss_pred ceeceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEeeccCCC-cceecCCCeEEEEEEEEEcccccCHHHHHHHHHH
Q 025262 117 SVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDGEWP-QFYQPSNNVTVFKTLLKGSSIELTSAMRKDLVAA 195 (255)
Q Consensus 117 ~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~vP-~F~q~~~n~t~~~~~l~~~~~~l~~~~~~~L~~d 195 (255)
..++.++.++++++||| .+.+.|++ ++..++|+|..+|+|..+ .+..++++++.+.+++... ... ...+..+
T Consensus 11 ~~~~~~~~l~l~v~NPN-~~~l~~~~-~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~----~~~~~~~ 83 (100)
T smart00769 11 SGLEIEIVLKVKVQNPN-PFPIPVNG-LSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL----AEALIWH 83 (100)
T ss_pred cceEEEEEEEEEEECCC-CCcccccc-EEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH----hHHHHHh
Confidence 35678899999999999 68999997 999999999999999986 7999999999999998873 222 3455566
Q ss_pred HhCCCeEEEEEEEEe
Q 025262 196 QTSGKTVPFKVNLRV 210 (255)
Q Consensus 196 ~~~g~~v~l~v~v~~ 210 (255)
+.+|+.++++++.++
T Consensus 84 l~~~~~~~y~l~g~l 98 (100)
T smart00769 84 IANGEEIPYRLDGKL 98 (100)
T ss_pred hccCCCccEEEEEEE
Confidence 667755666665543
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.73 E-value=0.0019 Score=55.98 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=58.2
Q ss_pred CCCCEEEEeeeEEeeeecCCCCceeceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEeeccCCCc-ceecCCCeEEE
Q 025262 95 PESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDGEWPQ-FYQPSNNVTVF 173 (255)
Q Consensus 95 P~~P~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~vP~-F~q~~~n~t~~ 173 (255)
|+.-.++-.++......++.....+..++.-+|.+.|+| .+.+.-.+ +++++.|....+|.+.... ...++++...+
T Consensus 98 PRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~Vt~-~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~ 175 (238)
T PF07092_consen 98 PRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVTVTN-LSIQVLYMKTVVGKGKNSNITVIGPRSSKQV 175 (238)
T ss_pred CcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEEEEe-EEEEEEEEEeEEeeeEecceEEecccCCceE
Confidence 765554444444333333333456777788889999999 89999997 9999999999999987654 35667766655
Q ss_pred EEEEEE
Q 025262 174 KTLLKG 179 (255)
Q Consensus 174 ~~~l~~ 179 (255)
...+..
T Consensus 176 ~~tV~t 181 (238)
T PF07092_consen 176 NYTVKT 181 (238)
T ss_pred EEEeeE
Confidence 555443
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.66 E-value=0.00035 Score=64.16 Aligned_cols=70 Identities=24% Similarity=0.229 Sum_probs=42.2
Q ss_pred HHHHHHHHHHheeeeeecCCCCEEEEeeeEEeeeecCCCCceeceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEee
Q 025262 77 LLVLLLAIAAGVFYLVFRPESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALC 156 (255)
Q Consensus 77 ~l~ll~gi~~~i~~lvlrP~~P~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg 156 (255)
+|+++.+++.+++. .-+ |--.|+-..|++.-.+ .--.-|+++|.|.||| .+.|..++ .++.||-+-.-+|
T Consensus 312 ~lL~ig~~~gFv~A-ttK---pL~~v~v~~I~NVlaS----~qELmfdl~V~A~NPn-~~~V~I~d-~dldIFAKS~yvg 381 (387)
T PF12751_consen 312 LLLVIGFAIGFVFA-TTK---PLTDVQVVSIQNVLAS----EQELMFDLTVEAFNPN-WFTVTIDD-MDLDIFAKSRYVG 381 (387)
T ss_pred HHHHHHHHHHhhhh-cCc---ccccceEEEeeeeeec----cceEEEeeEEEEECCC-eEEEEecc-ceeeeEecCCccC
Confidence 33444444444433 444 4334444444443322 2345699999999999 78999997 8999986544343
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.54 E-value=0.0077 Score=48.57 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=73.9
Q ss_pred CCCEEEEeeeEEeeeecCCCCceeceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEeeccCC-CcceecCCCeEEEE
Q 025262 96 ESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDGEW-PQFYQPSNNVTVFK 174 (255)
Q Consensus 96 ~~P~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~v-P~F~q~~~n~t~~~ 174 (255)
+.|...--.+..-... ....++-.++.++||| -+.+--.+ ....++-+|..+|.|.. -++..++++...+.
T Consensus 31 ~~p~ve~~ka~wGkvt------~s~~EiV~t~KiyNPN-~fPipVtg-l~y~vymN~Iki~eG~~~k~~~v~p~S~~tvd 102 (161)
T COG5608 31 KKPGVESMKAKWGKVT------NSETEIVGTLKIYNPN-PFPIPVTG-LQYAVYMNDIKIGEGEILKGTTVPPNSRETVD 102 (161)
T ss_pred CCCCceEEEEEEEEEe------ccceEEEEEEEecCCC-Ccceeeec-eEEEEEEcceEeeccccccceEECCCCeEEEE
Confidence 4555554444443332 2346799999999999 57899986 89999999999999985 66999999999999
Q ss_pred EEEEEcccccCHHHHHHHHHHHhCCCeEEEEEEEEeE
Q 025262 175 TLLKGSSIELTSAMRKDLVAAQTSGKTVPFKVNLRVP 211 (255)
Q Consensus 175 ~~l~~~~~~l~~~~~~~L~~d~~~g~~v~l~v~v~~~ 211 (255)
+.+..+...+.+. +...+.+|++-+.+++++..
T Consensus 103 v~l~~d~~~~ke~----w~~hi~ngErs~Ir~~i~~~ 135 (161)
T COG5608 103 VPLRLDNSKIKEW----WVTHIENGERSTIRVRIKGV 135 (161)
T ss_pred EEEEEehHHHHHH----HHHHhhccCcccEEEEEEEE
Confidence 9998765444433 44455777554444444433
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.96 E-value=0.095 Score=45.21 Aligned_cols=110 Identities=24% Similarity=0.233 Sum_probs=63.1
Q ss_pred cCCCCCceeehhhHHHHHHHHHHHHHHHHHheeeeeecC--CCCEEEEeeeEEee-------eecCCC--CceeceEEEE
Q 025262 57 RRKSRSTTCCCFRFCCCSLLLLVLLLAIAAGVFYLVFRP--ESPNYSVDGVSIAG-------LNLTSP--SSVVSPRFDV 125 (255)
Q Consensus 57 ~~~~~~~~c~c~~~~~~~ll~l~ll~gi~~~i~~lvlrP--~~P~fsV~s~~v~~-------~~~~~~--~~~ls~~~~~ 125 (255)
+||++.+||+|++-++++++++++++ +++++=-=.| +.-+++|+++.+.. +|++-. =..-|++. +
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l---~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~ 107 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVL---VFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-A 107 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHhe---eeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-e
Confidence 35567777888777767767654433 3343334555 34566666666532 232110 01124444 4
Q ss_pred EEEEeCCCCeEEEEECCCeEEEEEECCEEeeccCCCcceecCCCeEEEEEEE
Q 025262 126 SVTADNPNDKIGIYYERGSSVEVSYKDVALCDGEWPQFYQPSNNVTVFKTLL 177 (255)
Q Consensus 126 tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~vP~F~q~~~n~t~~~~~l 177 (255)
.+.-+ |..+.++|++ ..+ +...+..|.++++.+...|.+..-...
T Consensus 108 ~~~Y~--~~~~~v~Y~g-~~v----G~a~~p~g~~~ar~T~~l~~tv~~~~~ 152 (219)
T PLN03160 108 SFKYS--NTTTTIYYGG-TVV----GEARTPPGKAKARRTMRMNVTVDIIPD 152 (219)
T ss_pred eEEEc--CeEEEEEECC-EEE----EEEEcCCcccCCCCeEEEEEEEEEEec
Confidence 45544 3458899976 333 334577888999999888888643333
No 8
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=82.67 E-value=16 Score=28.05 Aligned_cols=31 Identities=6% Similarity=0.164 Sum_probs=18.3
Q ss_pred EEEECCEEeecc--CCCcceecCCCeEEEEEEEEEc
Q 025262 147 EVSYKDVALCDG--EWPQFYQPSNNVTVFKTLLKGS 180 (255)
Q Consensus 147 ~v~Y~g~~lg~~--~vP~F~q~~~n~t~~~~~l~~~ 180 (255)
...|++..+|.- .+|+ +...+..+++.+...
T Consensus 69 A~~~d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 69 ALDYDGAEVGRREVLVPP---SGERTVRVTVTVRTT 101 (112)
T ss_pred EEeCCCCEEEEEEEEECC---CCCcEEEEEEEEEec
Confidence 445788888864 4566 344455555665543
No 9
>PRK05529 cell division protein FtsQ; Provisional
Probab=81.82 E-value=2.8 Score=36.91 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=12.6
Q ss_pred CCEEEEeeeEEeeee
Q 025262 97 SPNYSVDGVSIAGLN 111 (255)
Q Consensus 97 ~P~fsV~s~~v~~~~ 111 (255)
.|-|.|+.+.|++-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 589999999999744
No 10
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=78.88 E-value=0.4 Score=31.11 Aligned_cols=8 Identities=38% Similarity=1.335 Sum_probs=3.7
Q ss_pred CCceeehh
Q 025262 61 RSTTCCCF 68 (255)
Q Consensus 61 ~~~~c~c~ 68 (255)
.+|||||+
T Consensus 24 ggcccccc 31 (56)
T TIGR03602 24 GGCCCCCC 31 (56)
T ss_pred CCeEEEec
Confidence 34555443
No 11
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=76.83 E-value=4.7 Score=35.24 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=16.3
Q ss_pred eeceEEEEEEEEeCCCCeEEE
Q 025262 118 VVSPRFDVSVTADNPNDKIGI 138 (255)
Q Consensus 118 ~ls~~~~~tl~a~NPN~~~~i 138 (255)
.+...=++++.++|||.++.=
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~ 125 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTG 125 (292)
T ss_pred EEEeccCeeEEccCCCCceee
Confidence 455567899999999987653
No 12
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=76.79 E-value=7.4 Score=31.77 Aligned_cols=17 Identities=12% Similarity=-0.101 Sum_probs=10.4
Q ss_pred EEECCCeEEEEEECCEEe
Q 025262 138 IYYERGSSVEVSYKDVAL 155 (255)
Q Consensus 138 i~Y~~~~~~~v~Y~g~~l 155 (255)
-+|-. .++++.+.+...
T Consensus 78 ~rylk-v~i~L~~~~~~~ 94 (162)
T PRK07021 78 DRVLY-VGLTLRLPDEAT 94 (162)
T ss_pred ceEEE-EEEEEEECCHHH
Confidence 45655 677776666543
No 13
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=74.53 E-value=8.1 Score=31.67 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHheeeeeec
Q 025262 68 FRFCCCSLLLLVLLLAIAAGVFYLVFR 94 (255)
Q Consensus 68 ~~~~~~~ll~l~ll~gi~~~i~~lvlr 94 (255)
+.|++.+++++++++|+.+..+|+...
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGSK 43 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhcc
Confidence 667888888888888888888887763
No 14
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=74.31 E-value=12 Score=29.29 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHheee--eeecCCCCEEEEeeeEEeeeecCCCCceeceEEEEEEEEeCCCC
Q 025262 74 SLLLLVLLLAIAAGVFY--LVFRPESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPND 134 (255)
Q Consensus 74 ~ll~l~ll~gi~~~i~~--lvlrP~~P~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~ 134 (255)
+.+.+++|++++.+++| +.-++++|.+++........ ....+-+-++++|--.
T Consensus 8 ~~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~--------~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 8 FGISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM--------QTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE--------eCCEEEEEEEEEeCCC
Confidence 34445556666666654 45677899999887665432 2334677788888654
No 15
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=71.52 E-value=24 Score=28.93 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=10.0
Q ss_pred cccccCHHHHHHHHH
Q 025262 180 SSIELTSAMRKDLVA 194 (255)
Q Consensus 180 ~~~~l~~~~~~~L~~ 194 (255)
++...+++++..|.+
T Consensus 131 dekYmPpEv~~al~~ 145 (159)
T PRK13150 131 DENYTPPEVEKAMQE 145 (159)
T ss_pred CCCCCCHHHHHHHHH
Confidence 445577887777764
No 16
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=69.83 E-value=5.6 Score=33.44 Aligned_cols=29 Identities=38% Similarity=0.644 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHheeeeeecCCCC
Q 025262 70 FCCCSLLLLVLLLAIAAGVFYLVFRPESP 98 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi~~~i~~lvlrP~~P 98 (255)
|=.++++++.+++++++++++.+++|..|
T Consensus 3 WK~aF~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHHHHHhheeeEEEccCCC
Confidence 33344455666777778888889999866
No 17
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=68.14 E-value=33 Score=28.85 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.3
Q ss_pred cCCCCEEEEeeeEEeeeecCC
Q 025262 94 RPESPNYSVDGVSIAGLNLTS 114 (255)
Q Consensus 94 rP~~P~fsV~s~~v~~~~~~~ 114 (255)
.++.|.|.+++++...++.+.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G 57 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG 57 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC
Confidence 467899999999988887643
No 18
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=67.43 E-value=3.4 Score=35.63 Aligned_cols=9 Identities=11% Similarity=0.302 Sum_probs=5.1
Q ss_pred HHHHHHHHh
Q 025262 189 RKDLVAAQT 197 (255)
Q Consensus 189 ~~~L~~d~~ 197 (255)
+.+|.+.++
T Consensus 152 W~Em~~Ais 160 (217)
T PF07423_consen 152 WNEMLKAIS 160 (217)
T ss_pred HHHHHHHHH
Confidence 566666553
No 19
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=66.20 E-value=42 Score=26.67 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=36.7
Q ss_pred HHheeeeeecC--CCCEEEEeeeEEeeeecCCCCceeceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEeecc
Q 025262 85 AAGVFYLVFRP--ESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDG 158 (255)
Q Consensus 85 ~~~i~~lvlrP--~~P~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~ 158 (255)
+.+++|.++.- +++..++.+.+- ++. +-.+.+..+++|-.+ ..+..=. .++.+..++...++.
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~-------~~~~~v~g~V~N~g~-~~i~~c~-i~~~l~~~~~~~~n~ 97 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQY-------SESFYVDGTVTNTGK-FTIKKCK-ITVKLYNDKQVSGNK 97 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eee-------ccEEEEEEEEEECCC-CEeeEEE-EEEEEEeCCCccCch
Confidence 33444444443 667777765553 332 234777888899764 3555544 778887766554443
No 20
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=65.98 E-value=2.9 Score=23.39 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHheeeeeecCCC
Q 025262 76 LLLVLLLAIAAGVFYLVFRPES 97 (255)
Q Consensus 76 l~l~ll~gi~~~i~~lvlrP~~ 97 (255)
+.+++.+++++.++|.+++|++
T Consensus 3 l~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 3 LGGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 3455666777777788888864
No 21
>PHA03054 IMV membrane protein; Provisional
Probab=65.67 E-value=4.7 Score=28.30 Aligned_cols=26 Identities=15% Similarity=0.508 Sum_probs=15.0
Q ss_pred ehhhHHHHHHHHHHHHHHHHHheeee
Q 025262 66 CCFRFCCCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 66 ~c~~~~~~~ll~l~ll~gi~~~i~~l 91 (255)
+|..|...++++++++++++..++||
T Consensus 44 ~~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667666666555555555555553
No 22
>PHA02650 hypothetical protein; Provisional
Probab=65.63 E-value=4.6 Score=28.96 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=17.3
Q ss_pred eehhhHHHHHHHHHHHHHHHHHheeee
Q 025262 65 CCCFRFCCCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 65 c~c~~~~~~~ll~l~ll~gi~~~i~~l 91 (255)
.++..|...++++++++++++..++||
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777776666666666666666665
No 23
>PHA02819 hypothetical protein; Provisional
Probab=65.53 E-value=4.8 Score=28.23 Aligned_cols=26 Identities=23% Similarity=0.306 Sum_probs=15.2
Q ss_pred ehhhHHHHHHHHHHHHHHHHHheeee
Q 025262 66 CCFRFCCCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 66 ~c~~~~~~~ll~l~ll~gi~~~i~~l 91 (255)
+|..|...++++++++++++..++||
T Consensus 42 ~~~~~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 42 KSFLRYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667666666555555555555554
No 24
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=64.50 E-value=10 Score=24.39 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHheeeeeecC
Q 025262 72 CCSLLLLVLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 72 ~~~ll~l~ll~gi~~~i~~lvlrP 95 (255)
+.++++..+|+|+.+..+|..|-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 345667788999999999999987
No 25
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=64.35 E-value=3.3 Score=32.51 Aligned_cols=9 Identities=0% Similarity=0.467 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 025262 70 FCCCSLLLL 78 (255)
Q Consensus 70 ~~~~~ll~l 78 (255)
|+++++|++
T Consensus 2 W~l~~iii~ 10 (130)
T PF12273_consen 2 WVLFAIIIV 10 (130)
T ss_pred eeeHHHHHH
Confidence 554444333
No 26
>PHA02844 putative transmembrane protein; Provisional
Probab=64.12 E-value=5.4 Score=28.28 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=16.5
Q ss_pred eehhhHHHHHHHHHHHHHHHHHheeee
Q 025262 65 CCCFRFCCCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 65 c~c~~~~~~~ll~l~ll~gi~~~i~~l 91 (255)
.+|..|...++++++++++++..++||
T Consensus 43 ~~~~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 43 VCSSSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667766666555555666666665
No 27
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=63.42 E-value=67 Score=24.73 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=42.2
Q ss_pred EeeccCCCcceecCCC-eEEEEEEEEEcccccCHHHHHHHHHHHhCCCeEEEEEEEEeEEEEEEceEEEeeeEEEE
Q 025262 154 ALCDGEWPQFYQPSNN-VTVFKTLLKGSSIELTSAMRKDLVAAQTSGKTVPFKVNLRVPVKIKVGSVKTWTIKVKV 228 (255)
Q Consensus 154 ~lg~~~vP~F~q~~~n-~t~~~~~l~~~~~~l~~~~~~~L~~d~~~g~~v~l~v~v~~~vr~kvg~~~t~~~~v~v 228 (255)
++|...+|+..-.... .......+.. .+.+...++.+++-..+.+.|.++.+. +.++|+++...+.+..
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i----~d~~~f~~f~~~~~~~~~~~l~l~g~~--~~~~g~l~~~~i~~~k 71 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTI----TDQDAFTQFVTALLFNEEVTLTLRGKT--DTHLGGLPFSGIPFDK 71 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEe----cCHHHHHHHHHHHHhCCcEEEEEEEee--eEEEccEEEEEEeecc
Confidence 4677788988882222 2223333332 345567888888765547777777664 7788988655444433
No 28
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.28 E-value=6.6 Score=32.76 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHheeeeeecCCCCEEEEeeeEE---eeeecCC
Q 025262 70 FCCCSLLLLVLLLAIAAGVFYLVFRPESPNYSVDGVSI---AGLNLTS 114 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi~~~i~~lvlrP~~P~fsV~s~~v---~~~~~~~ 114 (255)
|+|.++|+|.+ +++++++..++.|+.|...+.+.+- ..|.+++
T Consensus 13 w~f~iLLAln~--l~~~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 13 WLFFILLALNT--LLAVLIALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred HHHHHHHHHHH--HHHHHhheeeccCCCCCchhhccCcccceeEEEEc
Confidence 44544444433 3346667778899887766666553 2355544
No 29
>CHL00020 psbN photosystem II protein N
Probab=61.58 E-value=11 Score=23.92 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHheeeeeecC
Q 025262 72 CCSLLLLVLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 72 ~~~ll~l~ll~gi~~~i~~lvlrP 95 (255)
+.++++..+++++.+..+|..|-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 345667788999999999999987
No 30
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=60.79 E-value=77 Score=25.86 Aligned_cols=16 Identities=0% Similarity=0.200 Sum_probs=9.9
Q ss_pred cccccCHHHHHHHHHH
Q 025262 180 SSIELTSAMRKDLVAA 195 (255)
Q Consensus 180 ~~~~l~~~~~~~L~~d 195 (255)
++...++++...|++.
T Consensus 124 de~YmP~Ev~~al~~~ 139 (155)
T PRK13159 124 DETYMPKELKDAMAEG 139 (155)
T ss_pred CCcCCCHHHHHHHHhc
Confidence 3445777777777543
No 31
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=60.60 E-value=5.9 Score=40.32 Aligned_cols=26 Identities=38% Similarity=0.685 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHheeeeeecCC
Q 025262 71 CCCSLLLLVLLLAIAAGVFYLVFRPE 96 (255)
Q Consensus 71 ~~~~ll~l~ll~gi~~~i~~lvlrP~ 96 (255)
.|+.+.++++.++++++|++...+=|
T Consensus 153 ~~~~l~Llvl~i~~ligv~~~fvtnk 178 (865)
T KOG4331|consen 153 PCCELELLVLAIELLIGVFRAFVTNK 178 (865)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36666667777777777766554433
No 32
>PHA02975 hypothetical protein; Provisional
Probab=58.43 E-value=8.3 Score=26.90 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=14.6
Q ss_pred ehhhHHHHHHHHHHHHHHHHHheeee
Q 025262 66 CCFRFCCCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 66 ~c~~~~~~~ll~l~ll~gi~~~i~~l 91 (255)
++..|...+++++.++++++..++||
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667666655555555555555553
No 33
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=57.77 E-value=5.3 Score=23.12 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHheeeeeecCCC
Q 025262 76 LLLVLLLAIAAGVFYLVFRPES 97 (255)
Q Consensus 76 l~l~ll~gi~~~i~~lvlrP~~ 97 (255)
+..++.+|+++.++|.++||++
T Consensus 7 l~~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 7 LAGAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 4445566777777777889864
No 34
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=57.68 E-value=6.6 Score=24.04 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHheeeeeec
Q 025262 74 SLLLLVLLLAIAAGVFYLVFR 94 (255)
Q Consensus 74 ~ll~l~ll~gi~~~i~~lvlr 94 (255)
++-++++++.|...|+|+++.
T Consensus 13 ~l~~llflv~imliif~f~le 33 (43)
T PF11395_consen 13 FLSFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555556666543
No 35
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=57.49 E-value=2.5 Score=23.89 Aligned_cols=21 Identities=43% Similarity=0.747 Sum_probs=14.8
Q ss_pred HHHHHHHHHHheeeeeecCCC
Q 025262 77 LLVLLLAIAAGVFYLVFRPES 97 (255)
Q Consensus 77 ~l~ll~gi~~~i~~lvlrP~~ 97 (255)
.+++.+++++.++|.++||++
T Consensus 3 ~~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 3 LLVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHHhCHHh
Confidence 455666777777787888864
No 36
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=57.09 E-value=6.9 Score=25.38 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHheeeeeecCCC
Q 025262 73 CSLLLLVLLLAIAAGVFYLVFRPES 97 (255)
Q Consensus 73 ~~ll~l~ll~gi~~~i~~lvlrP~~ 97 (255)
+-.+++++++++++++++.+|+|+.
T Consensus 11 a~~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 11 ADSWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3455565666666666666888864
No 37
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.98 E-value=15 Score=30.80 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=10.1
Q ss_pred EECCCeEEEEEECCEE
Q 025262 139 YYERGSSVEVSYKDVA 154 (255)
Q Consensus 139 ~Y~~~~~~~v~Y~g~~ 154 (255)
+|-. .++++.+.+..
T Consensus 103 ryLk-v~i~Le~~~~~ 117 (182)
T PRK08455 103 RYLK-TSISLELSNEK 117 (182)
T ss_pred eEEE-EEEEEEECCHh
Confidence 6765 67777776654
No 38
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=55.98 E-value=9.7 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHheeeeeecC
Q 025262 73 CSLLLLVLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 73 ~~ll~l~ll~gi~~~i~~lvlrP 95 (255)
.++.+..+++++.+..+|..|-|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 45566778889999999999986
No 39
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=53.29 E-value=6.1 Score=25.50 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHheeeeeecCCC
Q 025262 76 LLLVLLLAIAAGVFYLVFRPES 97 (255)
Q Consensus 76 l~l~ll~gi~~~i~~lvlrP~~ 97 (255)
+.++++++++++++|.+|+|+.
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 4445555566666666788874
No 40
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=52.81 E-value=9.5 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=1.1
Q ss_pred ccccccCCCCCceee
Q 025262 52 GLSRRRRKSRSTTCC 66 (255)
Q Consensus 52 ~~~~r~~~~~~~~c~ 66 (255)
.|+..++.|-+.-||
T Consensus 15 ~ysa~p~~r~~iPc~ 29 (93)
T PF08999_consen 15 DYSAAPRGRFGIPCC 29 (93)
T ss_dssp ------------SSS
T ss_pred ccccCCCCccCCCcc
Confidence 344444333333343
No 41
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=52.20 E-value=6 Score=30.56 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=7.9
Q ss_pred HHheeeeeecCCC
Q 025262 85 AAGVFYLVFRPES 97 (255)
Q Consensus 85 ~~~i~~lvlrP~~ 97 (255)
+++++|+.+||..
T Consensus 12 ~~~i~yf~iRPQk 24 (113)
T PRK06531 12 MLGLIFFMQRQQK 24 (113)
T ss_pred HHHHHHheechHH
Confidence 3334566799954
No 42
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=49.99 E-value=32 Score=28.19 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=10.8
Q ss_pred EEECCCeEEEEEECCEE
Q 025262 138 IYYERGSSVEVSYKDVA 154 (255)
Q Consensus 138 i~Y~~~~~~~v~Y~g~~ 154 (255)
.+|-. .++++.+.+..
T Consensus 86 ~ryLk-v~i~l~~~d~~ 101 (170)
T PRK05696 86 DRLVQ-IKVQLMVRGSD 101 (170)
T ss_pred ceEEE-EEEEEEECCHH
Confidence 56765 67777777654
No 43
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=49.03 E-value=4.9 Score=33.28 Aligned_cols=11 Identities=36% Similarity=1.204 Sum_probs=7.8
Q ss_pred CCceeehhhHH
Q 025262 61 RSTTCCCFRFC 71 (255)
Q Consensus 61 ~~~~c~c~~~~ 71 (255)
.=|.|||.||+
T Consensus 111 plc~cccscw~ 121 (214)
T PF15482_consen 111 PLCLCCCSCWC 121 (214)
T ss_pred chhheeccccC
Confidence 34668888886
No 44
>PHA02692 hypothetical protein; Provisional
Probab=48.11 E-value=13 Score=26.12 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=11.8
Q ss_pred hhhHHHHHHH-HHHHHHHHHHheee
Q 025262 67 CFRFCCCSLL-LLVLLLAIAAGVFY 90 (255)
Q Consensus 67 c~~~~~~~ll-~l~ll~gi~~~i~~ 90 (255)
+..|...+++ +++++++++..++|
T Consensus 42 ~~~~~~~ii~~~~~~~~~vll~flY 66 (70)
T PHA02692 42 GVPWTTVFLIGLIAAAIGVLLCFHY 66 (70)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655555 33344444444444
No 45
>PRK01844 hypothetical protein; Provisional
Probab=48.03 E-value=18 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHheee
Q 025262 70 FCCCSLLLLVLLLAIAAGVFY 90 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi~~~i~~ 90 (255)
|+.+++.++.+++|++++++.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 554555566777777776553
No 46
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.74 E-value=18 Score=25.37 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHhe
Q 025262 69 RFCCCSLLLLVLLLAIAAGV 88 (255)
Q Consensus 69 ~~~~~~ll~l~ll~gi~~~i 88 (255)
.|+.++++++.+++|++++.
T Consensus 3 l~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGF 22 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35555666777778887774
No 47
>PHA03049 IMV membrane protein; Provisional
Probab=47.17 E-value=9.5 Score=26.44 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHheeeeeecC
Q 025262 73 CSLLLLVLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 73 ~~ll~l~ll~gi~~~i~~lvlrP 95 (255)
.-++++++.++++++|+|-+|+=
T Consensus 3 ~d~~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 3 GDIILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777888889999988874
No 48
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.15 E-value=63 Score=24.84 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=13.4
Q ss_pred ceeceEEEEEEEEeCCCCe
Q 025262 117 SVVSPRFDVSVTADNPNDK 135 (255)
Q Consensus 117 ~~ls~~~~~tl~a~NPN~~ 135 (255)
...+...+.++.+.|-|.+
T Consensus 48 ~~~~~~y~y~i~ayn~~Gk 66 (113)
T COG5294 48 QDGSPGYEYTITAYNKNGK 66 (113)
T ss_pred ccCCccceeeehhhccCCc
Confidence 3444567788999998854
No 49
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=47.09 E-value=93 Score=24.49 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=34.2
Q ss_pred EEeeeEEeeeecCCCCceeceEEEEEEEEeCCCCeEEEEECCCeEEEEE-ECCEEeeccCC
Q 025262 101 SVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVS-YKDVALCDGEW 160 (255)
Q Consensus 101 sV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~-Y~g~~lg~~~v 160 (255)
.++.+++++..+... ..-.-.+.++.++.|-.+ ....|=. +.++++ -+|+.+++-.+
T Consensus 49 ~~~~l~i~~~~~~~~-~~~~~~l~v~g~i~N~~~-~~~~~P~-l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 49 DIDALKIESSDLRPV-PDGPGVLVVSGTIRNRAD-FPQALPA-LELSLLDAQGQPLARRVF 106 (149)
T ss_pred CcceEEEeeeeEEee-cCCCCEEEEEEEEEeCCC-CcccCce-EEEEEECCCCCEEEEEEE
Confidence 444555544333221 122446788888999774 4677765 778877 56777776444
No 50
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=46.83 E-value=22 Score=25.14 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHheeee
Q 025262 67 CFRFCCCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 67 c~~~~~~~ll~l~ll~gi~~~i~~l 91 (255)
+..|...++.+++++++++..++||
T Consensus 45 ~~~~~~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 45 NFNWIILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555544444444444444444453
No 51
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=46.63 E-value=6.5 Score=30.38 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=0.0
Q ss_pred CceeehhhHHHHHHHHHHHHHHHHHheeeeeecC
Q 025262 62 STTCCCFRFCCCSLLLLVLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 62 ~~~c~c~~~~~~~ll~l~ll~gi~~~i~~lvlrP 95 (255)
+.|.+++.|.-+.+|+.++++|-+ +..|++|.=
T Consensus 26 ~s~sra~~vagltvLa~LLiAGQa-~TaYfv~~Q 58 (114)
T PF09307_consen 26 GSCSRALKVAGLTVLACLLIAGQA-VTAYFVFQQ 58 (114)
T ss_dssp ----------------------------------
T ss_pred CCccchhHHHHHHHHHHHHHHhHH-HHHHHHHHh
Confidence 344567776655555555555554 445667663
No 52
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=46.22 E-value=25 Score=24.28 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=12.6
Q ss_pred HHHHHHheeeeeecCC
Q 025262 81 LLAIAAGVFYLVFRPE 96 (255)
Q Consensus 81 l~gi~~~i~~lvlrP~ 96 (255)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 5556777889999998
No 53
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.06 E-value=12 Score=25.62 Aligned_cols=21 Identities=19% Similarity=0.399 Sum_probs=12.8
Q ss_pred HHHHHHHHHHheeeeeecCCC
Q 025262 77 LLVLLLAIAAGVFYLVFRPES 97 (255)
Q Consensus 77 ~l~ll~gi~~~i~~lvlrP~~ 97 (255)
.++++...+++++|.+|||+.
T Consensus 14 ~t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 344444455556677889865
No 54
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=45.89 E-value=20 Score=33.54 Aligned_cols=22 Identities=14% Similarity=0.316 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhe
Q 025262 67 CFRFCCCSLLLLVLLLAIAAGV 88 (255)
Q Consensus 67 c~~~~~~~ll~l~ll~gi~~~i 88 (255)
|+...+++||++.+++|.+++.
T Consensus 305 c~~~~i~~lL~ig~~~gFv~At 326 (387)
T PF12751_consen 305 CIYLSILLLLVIGFAIGFVFAT 326 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 3333344466666666655554
No 55
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=45.43 E-value=51 Score=27.02 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=10.5
Q ss_pred EEECCCeEEEEEECCEEe
Q 025262 138 IYYERGSSVEVSYKDVAL 155 (255)
Q Consensus 138 i~Y~~~~~~~v~Y~g~~l 155 (255)
.+|-. .++++.+.+...
T Consensus 86 ~ryLk-v~i~L~~~~~~~ 102 (166)
T PRK12785 86 VQYLK-LKVVLEVKDEKV 102 (166)
T ss_pred ceEEE-EEEEEEECCHHH
Confidence 35655 677777776543
No 56
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=44.53 E-value=31 Score=27.09 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=4.0
Q ss_pred EEEEEECC
Q 025262 145 SVEVSYKD 152 (255)
Q Consensus 145 ~~~v~Y~g 152 (255)
++.|.|.|
T Consensus 83 ~i~V~Y~G 90 (131)
T PF03100_consen 83 EIPVVYTG 90 (131)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 44555554
No 57
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=44.53 E-value=11 Score=26.27 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHheeeeeecC
Q 025262 73 CSLLLLVLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 73 ~~ll~l~ll~gi~~~i~~lvlrP 95 (255)
.-++++++.++++++|+|-+|+-
T Consensus 3 ~d~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 3 GDFILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777888889999988874
No 58
>PRK00523 hypothetical protein; Provisional
Probab=44.45 E-value=22 Score=25.15 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHheee
Q 025262 70 FCCCSLLLLVLLLAIAAGVFY 90 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi~~~i~~ 90 (255)
|+.+++.++++++|++++++.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffi 25 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555667777666543
No 59
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=42.94 E-value=16 Score=29.83 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=11.6
Q ss_pred HHHHHHHHheeeeeecC
Q 025262 79 VLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 79 ~ll~gi~~~i~~lvlrP 95 (255)
++++|+++.++|+.+||
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 34444444888989997
No 60
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=40.51 E-value=73 Score=24.51 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=15.2
Q ss_pred ceEEEEEEEEeCCCCeEEEEECC
Q 025262 120 SPRFDVSVTADNPNDKIGIYYER 142 (255)
Q Consensus 120 s~~~~~tl~a~NPN~~~~i~Y~~ 142 (255)
..++..++.+.||. .+++....
T Consensus 99 g~~~~~~~~l~NPS-~~ti~lG~ 120 (125)
T PF12505_consen 99 GINLNATVTLPNPS-PLTIDLGN 120 (125)
T ss_pred cEEEEEEEEEcCCC-eEEEEecc
Confidence 45677778888888 56776544
No 61
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=39.73 E-value=22 Score=28.87 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=15.4
Q ss_pred HHHHHHHHheeeeeecCCCCE
Q 025262 79 VLLLAIAAGVFYLVFRPESPN 99 (255)
Q Consensus 79 ~ll~gi~~~i~~lvlrP~~P~ 99 (255)
.+|++++++++|+..|.++=.
T Consensus 61 ~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred HHHHHHHHhheeEEEecccCc
Confidence 445677788888889988743
No 62
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=39.73 E-value=30 Score=30.19 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=8.8
Q ss_pred HHHHheeeeeecC
Q 025262 83 AIAAGVFYLVFRP 95 (255)
Q Consensus 83 gi~~~i~~lvlrP 95 (255)
.+++++.|+.|||
T Consensus 236 l~~Ia~aW~~yRP 248 (248)
T PF07787_consen 236 LLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHhheeeCc
Confidence 3455667888887
No 63
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=39.64 E-value=34 Score=22.97 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHHHHHHHHHheeeeeecCC
Q 025262 77 LLVLLLAIAAGVFYLVFRPE 96 (255)
Q Consensus 77 ~l~ll~gi~~~i~~lvlrP~ 96 (255)
++++++.++++++|+.-||+
T Consensus 37 ~l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 37 TLAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHHhheeEEeccCC
Confidence 44455556677888888875
No 64
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=38.78 E-value=27 Score=30.11 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=12.0
Q ss_pred HHHHHHHHHheeeeeecCCCCEE
Q 025262 78 LVLLLAIAAGVFYLVFRPESPNY 100 (255)
Q Consensus 78 l~ll~gi~~~i~~lvlrP~~P~f 100 (255)
+|+++|..++..+-++|||....
T Consensus 168 lv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 168 LVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHhhcceEEEEEEeccccccc
Confidence 33344443444444788877544
No 65
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.18 E-value=15 Score=29.69 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHheeeeeecCC
Q 025262 68 FRFCCCSLLLLVLLLAIAAGVFYLVFRPE 96 (255)
Q Consensus 68 ~~~~~~~ll~l~ll~gi~~~i~~lvlrP~ 96 (255)
+.|+..++++++.+++.+++++|....|.
T Consensus 6 ~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 6 LIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 45666666777777788888888887763
No 66
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=38.14 E-value=30 Score=30.20 Aligned_cols=9 Identities=11% Similarity=0.519 Sum_probs=4.8
Q ss_pred hhhHHHHHH
Q 025262 67 CFRFCCCSL 75 (255)
Q Consensus 67 c~~~~~~~l 75 (255)
|+.|+++++
T Consensus 228 ~~~~~~i~~ 236 (251)
T PF09753_consen 228 CWTWLMIFV 236 (251)
T ss_pred HHHHHHHHH
Confidence 666654433
No 67
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=37.88 E-value=20 Score=36.91 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=13.4
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHh
Q 025262 64 TCCCFRFCCCSLLLLVLLLAIAAG 87 (255)
Q Consensus 64 ~c~c~~~~~~~ll~l~ll~gi~~~ 87 (255)
|-|+++.++++++++++++|++.+
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~a 160 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVICA 160 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555556666666666554
No 68
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=37.63 E-value=47 Score=26.94 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=16.3
Q ss_pred CCCCeEEEEECCCeEEEEEECCEE-eeccCC
Q 025262 131 NPNDKIGIYYERGSSVEVSYKDVA-LCDGEW 160 (255)
Q Consensus 131 NPN~~~~i~Y~~~~~~~v~Y~g~~-lg~~~v 160 (255)
--|..+.+.|++ +-=++|-.|+. ++.|.+
T Consensus 80 D~~~~v~V~Y~G-iLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 80 DGNKSVTVSYEG-ILPDLFREGQGVVAEGQL 109 (153)
T ss_pred cCCceEEEEEec-cCchhhhcCCeEEEEEEe
Confidence 335567777765 45555555553 455554
No 69
>PTZ00116 signal peptidase; Provisional
Probab=37.40 E-value=2e+02 Score=24.25 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=24.2
Q ss_pred CCCCEEEEeeeEEeeeecCCCCceeceEEEEEEEE-----eCCCCeEEEEECCCeEEEEEECC
Q 025262 95 PESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTA-----DNPNDKIGIYYERGSSVEVSYKD 152 (255)
Q Consensus 95 P~~P~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a-----~NPN~~~~i~Y~~~~~~~v~Y~g 152 (255)
.+.|..+|+-..|..+...+....--+.+.+.|.+ -|=|.|.-+-| +.+.|.+
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy-----v~a~Y~t 93 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLY-----VLVTYET 93 (185)
T ss_pred CCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEEE-----EEEEEcC
Confidence 35565666555555665433212222222333322 26666655554 3445654
No 70
>COG3671 Predicted membrane protein [Function unknown]
Probab=36.82 E-value=16 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=15.2
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHh---eeeeeec
Q 025262 64 TCCCFRFCCCSLLLLVLLLAIAAG---VFYLVFR 94 (255)
Q Consensus 64 ~c~c~~~~~~~ll~l~ll~gi~~~---i~~lvlr 94 (255)
.|.|+.|.+..+++.++.+|++++ -+|.++|
T Consensus 70 Fw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~R 103 (125)
T COG3671 70 FWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYR 103 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666554444444444454333 2455555
No 71
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=35.88 E-value=29 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHheeeeeecC
Q 025262 71 CCCSLLLLVLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 71 ~~~~ll~l~ll~gi~~~i~~lvlrP 95 (255)
|..++++|++-++++.++++|+++-
T Consensus 64 fvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 64 FVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeec
Confidence 4556667777778888888877663
No 72
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=35.31 E-value=19 Score=21.49 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=7.4
Q ss_pred HHHHHHHHHheeee
Q 025262 78 LVLLLAIAAGVFYL 91 (255)
Q Consensus 78 l~ll~gi~~~i~~l 91 (255)
++.+++++++++|+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 44455555555554
No 73
>PF14927 Neurensin: Neurensin
Probab=35.25 E-value=54 Score=26.28 Aligned_cols=11 Identities=55% Similarity=0.618 Sum_probs=5.2
Q ss_pred HHHHHHHHHhe
Q 025262 78 LVLLLAIAAGV 88 (255)
Q Consensus 78 l~ll~gi~~~i 88 (255)
+++++|+++++
T Consensus 53 l~Ll~Gi~~l~ 63 (140)
T PF14927_consen 53 LLLLLGIVALT 63 (140)
T ss_pred HHHHHHHHHHH
Confidence 34455554444
No 74
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=34.20 E-value=1.3e+02 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.609 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 025262 67 CFRFCCCSLLLLVLLLAIA 85 (255)
Q Consensus 67 c~~~~~~~ll~l~ll~gi~ 85 (255)
|+-|++++++ |-+||+
T Consensus 66 ~~Gi~~AI~f---FPiGil 81 (98)
T PF10164_consen 66 CCGILCAIFF---FPIGIL 81 (98)
T ss_pred HHHHHHHHHH---HhhHHH
Confidence 4455554443 344444
No 75
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=33.56 E-value=19 Score=20.76 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=13.3
Q ss_pred HHHHHHHHHHheeeeeecCCC
Q 025262 77 LLVLLLAIAAGVFYLVFRPES 97 (255)
Q Consensus 77 ~l~ll~gi~~~i~~lvlrP~~ 97 (255)
..++.+|+++.++|.++||++
T Consensus 8 s~a~a~~Lf~YLv~ALlRaer 28 (29)
T PRK14740 8 SLALATGLFVYLLVALLRADR 28 (29)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 344555666666677788754
No 76
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=33.47 E-value=46 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=23.6
Q ss_pred HHHHHHHHheeeeeecCCCCEEEEeeeEEee
Q 025262 79 VLLLAIAAGVFYLVFRPESPNYSVDGVSIAG 109 (255)
Q Consensus 79 ~ll~gi~~~i~~lvlrP~~P~fsV~s~~v~~ 109 (255)
++++++.++++|...-++.|.|.+..+.++|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 3444555666777778889999999999986
No 77
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=33.29 E-value=49 Score=24.85 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHheeeee
Q 025262 71 CCCSLLLLVLLLAIAAGVFYLV 92 (255)
Q Consensus 71 ~~~~ll~l~ll~gi~~~i~~lv 92 (255)
|++.|..+++.+|+++++++.+
T Consensus 21 fLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 21 FLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556667777777776644
No 78
>PF15050 SCIMP: SCIMP protein
Probab=32.98 E-value=21 Score=27.80 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHheeeeeec
Q 025262 69 RFCCCSLLLLVLLLAIAAGVFYLVFR 94 (255)
Q Consensus 69 ~~~~~~ll~l~ll~gi~~~i~~lvlr 94 (255)
+|+++++.+ +++-.++++|+|-++|
T Consensus 8 FWiiLAVaI-I~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 8 FWIILAVAI-ILVSVVLGLILYCVCR 32 (133)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 566655442 3333334555554444
No 79
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=32.82 E-value=56 Score=18.46 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhee
Q 025262 70 FCCCSLLLLVLLLAIAAGVF 89 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi~~~i~ 89 (255)
|+..+...+.+++++.++++
T Consensus 7 w~~~i~al~~lv~~iTGl~l 26 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 54444444444444444443
No 80
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.74 E-value=20 Score=32.42 Aligned_cols=22 Identities=18% Similarity=0.588 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHheeeeeec
Q 025262 73 CSLLLLVLLLAIAAGVFYLVFR 94 (255)
Q Consensus 73 ~~ll~l~ll~gi~~~i~~lvlr 94 (255)
.+.++.++++.++.+|+||+||
T Consensus 259 ~aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667788888876
No 81
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=32.70 E-value=2.1e+02 Score=23.69 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=6.1
Q ss_pred ecCCCCEEEEee
Q 025262 93 FRPESPNYSVDG 104 (255)
Q Consensus 93 lrP~~P~fsV~s 104 (255)
+.+..|..+|+.
T Consensus 32 ~~~~~~~~~i~v 43 (175)
T PF04573_consen 32 FHPPSPSVSISV 43 (175)
T ss_pred ccCCCCceEEEE
Confidence 445555555543
No 82
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=31.46 E-value=77 Score=19.35 Aligned_cols=16 Identities=13% Similarity=0.511 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 025262 70 FCCCSLLLLVLLLAIA 85 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi~ 85 (255)
|++..+..+++.++++
T Consensus 16 Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 16 WIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5554444444444433
No 83
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=31.08 E-value=54 Score=20.40 Aligned_cols=19 Identities=26% Similarity=0.730 Sum_probs=13.3
Q ss_pred HHHHHHHHHheeeeeecCC
Q 025262 78 LVLLLAIAAGVFYLVFRPE 96 (255)
Q Consensus 78 l~ll~gi~~~i~~lvlrP~ 96 (255)
+++++-+++.++|++++.+
T Consensus 28 ~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 28 VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHhheEEEeCC
Confidence 3445677788888888753
No 84
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.01 E-value=23 Score=27.73 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=9.5
Q ss_pred HHHHHHHheeeeeecC-CCCEEEEee
Q 025262 80 LLLAIAAGVFYLVFRP-ESPNYSVDG 104 (255)
Q Consensus 80 ll~gi~~~i~~lvlrP-~~P~fsV~s 104 (255)
-++|++++|+|++-|= |++...++.
T Consensus 76 GvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 3455666677776543 555555554
No 85
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=29.43 E-value=55 Score=30.90 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=10.3
Q ss_pred eeehhhHHHHHHHHHHHHHHH
Q 025262 64 TCCCFRFCCCSLLLLVLLLAI 84 (255)
Q Consensus 64 ~c~c~~~~~~~ll~l~ll~gi 84 (255)
.|||..|.++ ++.++..+|+
T Consensus 58 ~~~c~~~~~~-ia~lvc~aai 77 (406)
T PF04906_consen 58 RCCCLTWSLV-IATLVCCAAI 77 (406)
T ss_pred CCcchHHHHH-HHHHHHHHHH
Confidence 4667777643 3333344444
No 86
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=29.26 E-value=1.7e+02 Score=28.72 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=34.0
Q ss_pred EEEEeeeEEeeeecCCCCceeceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEeeccCCCcceecCCCeEEEEEEEE
Q 025262 99 NYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDGEWPQFYQPSNNVTVFKTLLK 178 (255)
Q Consensus 99 ~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~vP~F~q~~~n~t~~~~~l~ 178 (255)
++++.++++.++.++. +.++++++| .++.+ +. .++.+ |+|..=|.+.+..-.+ ...++....
T Consensus 441 ~l~~~~l~~~~l~i~~--------~~~~~~~~~--G~l~l--~~-l~~~l-~~G~~~~~~~ld~~~~----~~~~~~~~~ 502 (604)
T PF05170_consen 441 TLSAGSLKANGLPISN--------LKLQLKAKD--GLLTL--DP-LSAKL-YGGSLSGSASLDARQD----PPQYSLNLN 502 (604)
T ss_pred EEEhhheEECCceecc--------cEEEEEecC--CeEEE--ee-eeEec-CCcEEEEEEEEeccCC----CccEEEeee
Confidence 4556666665555432 344444433 33333 23 45555 7776666666553222 234445555
Q ss_pred EcccccCH
Q 025262 179 GSSIELTS 186 (255)
Q Consensus 179 ~~~~~l~~ 186 (255)
+.++.+.+
T Consensus 503 ~~~v~l~~ 510 (604)
T PF05170_consen 503 LRGVQLQP 510 (604)
T ss_pred eCCcchHH
Confidence 55555533
No 87
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=28.89 E-value=1.1e+02 Score=23.41 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=24.9
Q ss_pred CCCCeEEEEECCCeEEEEEECCEEeeccCCCccee
Q 025262 131 NPNDKIGIYYERGSSVEVSYKDVALCDGEWPQFYQ 165 (255)
Q Consensus 131 NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~vP~F~q 165 (255)
||| .+=+.|++|.+++|.|.|..+--|.-..|.+
T Consensus 40 ~pN-Yvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~ 73 (121)
T PF06919_consen 40 TPN-YVFMRFENGITVSVTYNGSIFKIGLDDDHRE 73 (121)
T ss_pred CCC-EEEEEecCCCEEEEEecCcEEEEEecCchhh
Confidence 999 5779999989999999986554443344433
No 88
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=28.82 E-value=54 Score=27.72 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=5.8
Q ss_pred eehhhHHHHHHH
Q 025262 65 CCCFRFCCCSLL 76 (255)
Q Consensus 65 c~c~~~~~~~ll 76 (255)
|.|+.|+|.++-
T Consensus 102 c~~lr~vcl~Ln 113 (192)
T PTZ00201 102 CTIHRWVCLALN 113 (192)
T ss_pred cchHHHHHHHHH
Confidence 335556654333
No 89
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=28.75 E-value=56 Score=33.69 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=7.6
Q ss_pred CCCCCCceeEeccccc
Q 025262 22 APAAAGTYVIQIPKDQ 37 (255)
Q Consensus 22 ~~p~~~~yv~~~pk~q 37 (255)
|+|-|.-|+..+-+++
T Consensus 57 ~~~~P~~~i~~~~~~~ 72 (806)
T PF05478_consen 57 PNPFPEGYIRKLLNDN 72 (806)
T ss_pred CCCCCHHHHHHHHccc
Confidence 4444555655333433
No 90
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.59 E-value=27 Score=27.31 Aligned_cols=20 Identities=0% Similarity=0.200 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHheeeeeec
Q 025262 75 LLLLVLLLAIAAGVFYLVFR 94 (255)
Q Consensus 75 ll~l~ll~gi~~~i~~lvlr 94 (255)
.+++.+++|+++.|+.++|-
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHH
Confidence 33444555555555544443
No 91
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.52 E-value=36 Score=31.50 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHheeeeeec
Q 025262 71 CCCSLLLLVLLLAIAAGVFYLVFR 94 (255)
Q Consensus 71 ~~~~ll~l~ll~gi~~~i~~lvlr 94 (255)
+++++|+|+++=.|+.+|.|+++.
T Consensus 228 fl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 228 FLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555566666777777888887776
No 92
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=28.34 E-value=45 Score=23.85 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=4.3
Q ss_pred CCccccccc
Q 025262 44 PENADRIKG 52 (255)
Q Consensus 44 p~~~~r~~~ 52 (255)
|+=++|.+.
T Consensus 23 P~fa~~l~~ 31 (82)
T PF11239_consen 23 PRFAARLRS 31 (82)
T ss_pred cHHHHHhcc
Confidence 344455554
No 93
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=27.75 E-value=20 Score=27.20 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhe
Q 025262 77 LLVLLLAIAAGV 88 (255)
Q Consensus 77 ~l~ll~gi~~~i 88 (255)
.+++|+.+++++
T Consensus 37 s~~~ll~lval~ 48 (106)
T PF11837_consen 37 SLLFLLSLVALI 48 (106)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 94
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=27.43 E-value=2.7e+02 Score=21.18 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=7.7
Q ss_pred EEEEEEEeCCCC
Q 025262 123 FDVSVTADNPND 134 (255)
Q Consensus 123 ~~~tl~a~NPN~ 134 (255)
+..++.+.|-|.
T Consensus 55 y~Y~~~~yd~~G 66 (114)
T TIGR01655 55 YEYKLDAYDSSG 66 (114)
T ss_pred EEEEEEEECCCC
Confidence 666677776554
No 95
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=27.36 E-value=44 Score=25.47 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=10.1
Q ss_pred HHHHHHHHHH-HHHHHHHheeeeee
Q 025262 70 FCCCSLLLLV-LLLAIAAGVFYLVF 93 (255)
Q Consensus 70 ~~~~~ll~l~-ll~gi~~~i~~lvl 93 (255)
|.+.++++++ +++.++-++.|...
T Consensus 1 w~Ll~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 1 WLLLGILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333 33334444455543
No 96
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=27.09 E-value=78 Score=25.70 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHheeeeeecCCCCEEEE
Q 025262 74 SLLLLVLLLAIAAGVFYLVFRPESPNYSV 102 (255)
Q Consensus 74 ~ll~l~ll~gi~~~i~~lvlrP~~P~fsV 102 (255)
.+++|++|+...++.+|-.=+...=.|++
T Consensus 15 gi~Ll~lLl~cgiGcvwhwkhr~~~~ftL 43 (158)
T PF11770_consen 15 GISLLLLLLLCGIGCVWHWKHRDSTRFTL 43 (158)
T ss_pred HHHHHHHHHHHhcceEEEeeccCccccch
Confidence 33444455555667777655533334433
No 97
>PHA03292 envelope glycoprotein I; Provisional
Probab=26.54 E-value=1.2e+02 Score=28.50 Aligned_cols=15 Identities=33% Similarity=0.800 Sum_probs=7.7
Q ss_pred ccccccccCCCCCcc
Q 025262 33 IPKDQIYRVPPPENA 47 (255)
Q Consensus 33 ~pk~q~~~~p~p~~~ 47 (255)
++-.-+.+.|||++.
T Consensus 278 ~~~~~~~~~~p~~~~ 292 (413)
T PHA03292 278 TEDSEILRTPPPDPS 292 (413)
T ss_pred ccCcccccCCCCCcc
Confidence 334445565666554
No 98
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=26.40 E-value=35 Score=34.74 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHheeeeeecCCCCEEE
Q 025262 68 FRFCCCSLLLLVLLLAIAAGVFYLVFRPESPNYS 101 (255)
Q Consensus 68 ~~~~~~~ll~l~ll~gi~~~i~~lvlrP~~P~fs 101 (255)
.+|++.++++++++.+.+++++|+.+.++.|++.
T Consensus 5 i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~ 38 (797)
T COG5009 5 IKYLLGILVTLILLGAGALAGLYLYISPDLPDVE 38 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 3555666666666666667777778888888764
No 99
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=26.07 E-value=3.7e+02 Score=22.01 Aligned_cols=20 Identities=30% Similarity=0.570 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHheeeeeec
Q 025262 75 LLLLVLLLAIAAGVFYLVFR 94 (255)
Q Consensus 75 ll~l~ll~gi~~~i~~lvlr 94 (255)
+++++++++++++++|....
T Consensus 19 l~~~lvvl~v~~g~~~~~~~ 38 (168)
T PF14221_consen 19 LLAILVVLAVVVGIFWKPGL 38 (168)
T ss_pred HHHHHHHHHHhheeEEEecc
Confidence 34445555667777776555
No 100
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.87 E-value=87 Score=23.43 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHheeeee-ec
Q 025262 76 LLLVLLLAIAAGVFYLV-FR 94 (255)
Q Consensus 76 l~l~ll~gi~~~i~~lv-lr 94 (255)
+.++.++.++.+|.|++ +|
T Consensus 69 ls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 69 LSFVCILVILYAIYYFVILR 88 (101)
T ss_pred HHHHHHHHHHhhheEEEEEe
Confidence 33333333444444544 54
No 101
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=25.13 E-value=32 Score=24.44 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=5.8
Q ss_pred HHHHHHHHheeeee
Q 025262 79 VLLLAIAAGVFYLV 92 (255)
Q Consensus 79 ~ll~gi~~~i~~lv 92 (255)
.+++|+++++.+.+
T Consensus 65 ~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 65 GLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 102
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=25.07 E-value=33 Score=26.26 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=8.9
Q ss_pred heeeeeecC--CCCEEEE
Q 025262 87 GVFYLVFRP--ESPNYSV 102 (255)
Q Consensus 87 ~i~~lvlrP--~~P~fsV 102 (255)
+++||++-- ..|.|.|
T Consensus 11 li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHccccCceEEEE
Confidence 556665443 3476665
No 103
>PHA02902 putative IMV membrane protein; Provisional
Probab=24.56 E-value=30 Score=23.92 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHheeeeeecC
Q 025262 75 LLLLVLLLAIAAGVFYLVFRP 95 (255)
Q Consensus 75 ll~l~ll~gi~~~i~~lvlrP 95 (255)
++++++.+.|+.+++|.+||-
T Consensus 6 fvi~~v~v~Ivclliya~YrR 26 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKR 26 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777763
No 104
>PRK14758 hypothetical protein; Provisional
Probab=24.39 E-value=76 Score=17.87 Aligned_cols=19 Identities=37% Similarity=0.663 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHheeee
Q 025262 73 CSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 73 ~~ll~l~ll~gi~~~i~~l 91 (255)
=++++++++-|+++.-+|+
T Consensus 8 EliLivlIlCalia~~fy~ 26 (27)
T PRK14758 8 EFILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3455555666777666664
No 105
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.27 E-value=64 Score=25.65 Aligned_cols=14 Identities=7% Similarity=0.171 Sum_probs=7.9
Q ss_pred ECCCeEEEEEECCEE
Q 025262 140 YERGSSVEVSYKDVA 154 (255)
Q Consensus 140 Y~~~~~~~v~Y~g~~ 154 (255)
|=. .++++.+++..
T Consensus 64 ylk-~~i~l~~~~~~ 77 (142)
T PRK07718 64 FIR-IQFKIETDSKK 77 (142)
T ss_pred EEE-EEEEEEECCHH
Confidence 434 56666666543
No 106
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.18 E-value=83 Score=29.50 Aligned_cols=16 Identities=6% Similarity=0.308 Sum_probs=10.1
Q ss_pred ceeceEEEEEEEEeCC
Q 025262 117 SVVSPRFDVSVTADNP 132 (255)
Q Consensus 117 ~~ls~~~~~tl~a~NP 132 (255)
..|+..+++|.++++-
T Consensus 82 ~NLtkeLN~t~~~K~~ 97 (442)
T PF06637_consen 82 ANLTKELNLTTRAKDA 97 (442)
T ss_pred hHHHHHhchhHHHHHH
Confidence 3566677777766553
No 107
>PRK10927 essential cell division protein FtsN; Provisional
Probab=24.04 E-value=1.7e+02 Score=26.78 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHhC
Q 025262 185 TSAMRKDLVAAQTS 198 (255)
Q Consensus 185 ~~~~~~~L~~d~~~ 198 (255)
+.+.++.|.+.++.
T Consensus 257 n~~nAE~LrAkLa~ 270 (319)
T PRK10927 257 GAEQAETVRAQLAF 270 (319)
T ss_pred CHHHHHHHHHHHHH
Confidence 34557888887753
No 108
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=24.03 E-value=34 Score=22.89 Aligned_cols=9 Identities=11% Similarity=0.346 Sum_probs=6.6
Q ss_pred eecCCCCEE
Q 025262 92 VFRPESPNY 100 (255)
Q Consensus 92 vlrP~~P~f 100 (255)
+|-|+.|.+
T Consensus 31 ~l~qq~~~y 39 (61)
T PF06692_consen 31 SLGQQGNTY 39 (61)
T ss_pred hhccCCCee
Confidence 567888776
No 109
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.98 E-value=27 Score=26.75 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=7.1
Q ss_pred HHheeeeeecCCC
Q 025262 85 AAGVFYLVFRPES 97 (255)
Q Consensus 85 ~~~i~~lvlrP~~ 97 (255)
++++.|+.+||..
T Consensus 14 ~~i~yF~~iRPQk 26 (109)
T PRK05886 14 MGGFMYFASRRQR 26 (109)
T ss_pred HHHHHHHHccHHH
Confidence 3334445678854
No 110
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=23.94 E-value=5.1e+02 Score=22.95 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=12.1
Q ss_pred eeceEEEEEEEEeCCCCe
Q 025262 118 VVSPRFDVSVTADNPNDK 135 (255)
Q Consensus 118 ~ls~~~~~tl~a~NPN~~ 135 (255)
.+..+=+++++++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 344455677888888765
No 111
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.94 E-value=67 Score=28.09 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=5.6
Q ss_pred hhhHHHHHHHH
Q 025262 67 CFRFCCCSLLL 77 (255)
Q Consensus 67 c~~~~~~~ll~ 77 (255)
|-+||.+++++
T Consensus 213 ~~~~~~il~l~ 223 (235)
T KOG3202|consen 213 CSQWCAILLLV 223 (235)
T ss_pred ccchhHHHHHH
Confidence 66665444333
No 112
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=23.94 E-value=41 Score=21.46 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHheeeee
Q 025262 74 SLLLLVLLLAIAAGVFYLV 92 (255)
Q Consensus 74 ~ll~l~ll~gi~~~i~~lv 92 (255)
.++.+++++||++.+-.++
T Consensus 7 ~iFsvvIil~If~~iGl~I 25 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSI 25 (49)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666655443333
No 113
>KOG4298 consensus CAP-binding protein complex interacting protein 2 [RNA processing and modification]
Probab=23.78 E-value=1.1e+02 Score=25.88 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHheeeeeecC-CCC
Q 025262 68 FRFCCCSLLLLVLLLAIAAGVFYLVFRP-ESP 98 (255)
Q Consensus 68 ~~~~~~~ll~l~ll~gi~~~i~~lvlrP-~~P 98 (255)
+.|.+..++.+++.++=+++++|+-|-| ..|
T Consensus 148 laW~FST~iGllLFL~Ei~llcwvKF~~v~~P 179 (245)
T KOG4298|consen 148 LAWAFSTVIGLLLFLAEIVLLCWVKFLPVGYP 179 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeecCCCc
Confidence 6788999999999999999999998887 444
No 114
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.52 E-value=92 Score=22.08 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhe
Q 025262 70 FCCCSLLLLVLLLAIAAGV 88 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi~~~i 88 (255)
|++.+.++|++++|..++.
T Consensus 4 ~lltFg~Fllvi~gMsiG~ 22 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGY 22 (77)
T ss_pred HHHHHHHHHHHHHHHhHhh
Confidence 4555555566666666554
No 115
>PRK10775 cell division protein FtsQ; Provisional
Probab=23.25 E-value=91 Score=27.77 Aligned_cols=14 Identities=7% Similarity=0.397 Sum_probs=10.7
Q ss_pred CCCEEEEeeeEEee
Q 025262 96 ESPNYSVDGVSIAG 109 (255)
Q Consensus 96 ~~P~fsV~s~~v~~ 109 (255)
+.|.|.|+.+.|++
T Consensus 52 ~~~~~pl~~V~V~G 65 (276)
T PRK10775 52 DAQRLPLSKLVVTG 65 (276)
T ss_pred cCCCCceeEEEEeC
Confidence 45788888888876
No 116
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.65 E-value=87 Score=27.33 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=6.5
Q ss_pred HHHHHHHheeeeeec
Q 025262 80 LLLAIAAGVFYLVFR 94 (255)
Q Consensus 80 ll~gi~~~i~~lvlr 94 (255)
++++++++++|++.|
T Consensus 248 ~~~~~~~~~~~~~~R 262 (262)
T PF14257_consen 248 PLILIIGLLVRFVRR 262 (262)
T ss_pred HHHHHHHHHHheEeC
Confidence 334444444444443
No 117
>PF14828 Amnionless: Amnionless
Probab=22.51 E-value=45 Score=31.87 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHheeeeeecCCCCEE
Q 025262 74 SLLLLVLLLAIAAGVFYLVFRPESPNY 100 (255)
Q Consensus 74 ~ll~l~ll~gi~~~i~~lvlrP~~P~f 100 (255)
++++.+++++++++++|+.+.|+.|.+
T Consensus 343 ~vl~~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 343 IVLGCLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred ehHHHHHHHHHHHHhheEEeccccccc
Confidence 334344455555555565555766665
No 118
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=22.47 E-value=1.4e+02 Score=22.89 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=16.0
Q ss_pred EEEEEEEeCCC----CeEEEEECCC-eEEEEEECCE
Q 025262 123 FDVSVTADNPN----DKIGIYYERG-SSVEVSYKDV 153 (255)
Q Consensus 123 ~~~tl~a~NPN----~~~~i~Y~~~-~~~~v~Y~g~ 153 (255)
.--++-..||| +.+..+|++. ..+.|.|+|.
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~ 86 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNK 86 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEEECCc
Confidence 33455666777 3445666552 2345555543
No 119
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=22.36 E-value=2.6e+02 Score=20.12 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=16.6
Q ss_pred CCEEEEeeeEEeeeecCCCCcee
Q 025262 97 SPNYSVDGVSIAGLNLTSPSSVV 119 (255)
Q Consensus 97 ~P~fsV~s~~v~~~~~~~~~~~l 119 (255)
.|.|- +++++..++++...+.+
T Consensus 34 ~P~fl-~~i~v~~~~lG~~~P~i 55 (91)
T PF10296_consen 34 LPSFL-DEISVTELDLGDSPPII 55 (91)
T ss_pred CCCcc-CcEEEEEEECCCCCCEE
Confidence 67775 99999999998754443
No 120
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.32 E-value=55 Score=24.37 Aligned_cols=14 Identities=0% Similarity=0.062 Sum_probs=6.6
Q ss_pred HHHHHHHheeeeee
Q 025262 80 LLLAIAAGVFYLVF 93 (255)
Q Consensus 80 ll~gi~~~i~~lvl 93 (255)
++.+|+++++|+++
T Consensus 78 ~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 78 VVGGLVGFLCWWFV 91 (96)
T ss_pred HHHHHHHHHhheeE
Confidence 33344445555543
No 121
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=22.04 E-value=1.4e+02 Score=19.23 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhee
Q 025262 73 CSLLLLVLLLAIAAGVF 89 (255)
Q Consensus 73 ~~ll~l~ll~gi~~~i~ 89 (255)
.+++++++++++++-.+
T Consensus 22 l~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 22 LIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33444444445544433
No 122
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=21.16 E-value=41 Score=26.44 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHheeeeeecCCCCEEEEeee
Q 025262 76 LLLVLLLAIAAGVFYLVFRPESPNYSVDGV 105 (255)
Q Consensus 76 l~l~ll~gi~~~i~~lvlrP~~P~fsV~s~ 105 (255)
-+++|++|+++..+...|.++...+++-+.
T Consensus 56 G~vili~GvvvT~vays~n~~~si~~~~G~ 85 (129)
T PF15099_consen 56 GVVILIAGVVVTAVAYSFNSHGSIISIFGP 85 (129)
T ss_pred hHHHHHHhhHhheeeEeecCCcchhhhehH
Confidence 345678888888888888887776665443
No 123
>PF07184 CTV_P33: Citrus tristeza virus P33 protein; InterPro: IPR010803 This family consists of several Citrus tristeza virus (CTV) P33 proteins. The function of P33 is unclear although it is known that the protein is not needed for virion formation [].
Probab=21.15 E-value=36 Score=28.97 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=26.5
Q ss_pred CCceeEeccccccccCCCCCccccccccccccCCCCCceeehhhH-HHHHHHHHHHHHHHHHhee
Q 025262 26 AGTYVIQIPKDQIYRVPPPENADRIKGLSRRRRKSRSTTCCCFRF-CCCSLLLLVLLLAIAAGVF 89 (255)
Q Consensus 26 ~~~yv~~~pk~q~~~~p~p~~~~r~~~~~~r~~~~~~~~c~c~~~-~~~~ll~l~ll~gi~~~i~ 89 (255)
.|.--+.+|.--+.+.-.|--|+--++.+.|- +...+.||+ .|.+++.++++-|+++.|+
T Consensus 242 agnvavtvpntplv~avspyva~ynen~rsri----slirrvccyavcvlvvs~limsgllaii~ 302 (303)
T PF07184_consen 242 AGNVAVTVPNTPLVSAVSPYVAEYNENARSRI----SLIRRVCCYAVCVLVVSLLIMSGLLAIIF 302 (303)
T ss_pred ccceEEecCCCccccccChhhhhhccchhHHH----HHHHHHHHHHHHHHHHHHHHHhcchheEe
Confidence 34455667766555443333332222222211 111112222 3445556666667766553
No 124
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=20.94 E-value=1e+02 Score=23.10 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHheeee
Q 025262 68 FRFCCCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 68 ~~~~~~~ll~l~ll~gi~~~i~~l 91 (255)
--|+.++.+++++..+++++.+|-
T Consensus 22 ~~Wl~~i~~~~v~~~t~~~l~iYp 45 (97)
T PF04834_consen 22 NYWLYAIGIVLVFCSTFFSLAIYP 45 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 458888888888888888888773
No 125
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=20.73 E-value=75 Score=22.09 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHheeeee
Q 025262 71 CCCSLLLLVLLLAIAAGVFYLV 92 (255)
Q Consensus 71 ~~~~ll~l~ll~gi~~~i~~lv 92 (255)
+...+++.++|++|++++.+..
T Consensus 13 i~G~LIAvvLLLsIl~~lt~~a 34 (66)
T PF13179_consen 13 ITGMLIAVVLLLSILAFLTYWA 34 (66)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777665544
No 126
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=20.68 E-value=89 Score=25.99 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHheeeeeecCC
Q 025262 68 FRFCCCSLLLLVLLLAIAAGVFYLVFRPE 96 (255)
Q Consensus 68 ~~~~~~~ll~l~ll~gi~~~i~~lvlrP~ 96 (255)
..|.++..+++.+.++-++++.|+-|.+.
T Consensus 108 ~~W~~s~~lGi~lFL~~l~l~~WIKF~~~ 136 (175)
T PF07856_consen 108 LAWRFSTVLGIPLFLAELALLGWIKFWDS 136 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeehhc
Confidence 56888888899899999999999988876
No 127
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=20.55 E-value=2e+02 Score=19.76 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=18.8
Q ss_pred eehhhHHHHHHHHHHHHHHHHHheeeeeecCC
Q 025262 65 CCCFRFCCCSLLLLVLLLAIAAGVFYLVFRPE 96 (255)
Q Consensus 65 c~c~~~~~~~ll~l~ll~gi~~~i~~lvlrP~ 96 (255)
|-.=.|++.++.+|.++=|++=.+-+..++++
T Consensus 29 C~~~~~InilL~~L~~iPgiIhA~yii~~~~r 60 (63)
T KOG1773|consen 29 CTVDVLINILLTLLGFIPGIIHAIYIIFFRGR 60 (63)
T ss_pred CchhhHHHHHHHHHHHhHHHHhhEEEEEEecC
Confidence 43444455555566666677666666666654
No 128
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.29 E-value=3.4e+02 Score=21.47 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=5.8
Q ss_pred EEEEEEEEeCCC
Q 025262 122 RFDVSVTADNPN 133 (255)
Q Consensus 122 ~~~~tl~a~NPN 133 (255)
.+++++..+++.
T Consensus 66 k~~i~l~~~~~~ 77 (142)
T PRK07718 66 RIQFKIETDSKK 77 (142)
T ss_pred EEEEEEEECCHH
Confidence 344455555543
No 129
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.14 E-value=41 Score=23.97 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=4.8
Q ss_pred HHHHheeeeee
Q 025262 83 AIAAGVFYLVF 93 (255)
Q Consensus 83 gi~~~i~~lvl 93 (255)
.++++.+|+++
T Consensus 14 ~ifVap~WL~l 24 (75)
T PF06667_consen 14 MIFVAPIWLIL 24 (75)
T ss_pred HHHHHHHHHHH
Confidence 33444445543
No 130
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=20.04 E-value=1.2e+02 Score=24.27 Aligned_cols=18 Identities=44% Similarity=0.761 Sum_probs=9.1
Q ss_pred HHHHHHHHHHheeeeeecCC
Q 025262 77 LLVLLLAIAAGVFYLVFRPE 96 (255)
Q Consensus 77 ~l~ll~gi~~~i~~lvlrP~ 96 (255)
++++++|++..++ -|.|+
T Consensus 47 ~lvllvGiaMAv~--GYwp~ 64 (141)
T PF10177_consen 47 ILVLLVGIAMAVL--GYWPK 64 (141)
T ss_pred HHHHHHhhHhhee--ecccc
Confidence 4455556654432 34566
Done!