Query 025262
Match_columns 255
No_of_seqs 203 out of 869
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.3 3.8E-06 1.3E-10 68.7 10.3 104 96-212 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.2 1.6E-06 5.6E-11 69.4 5.1 104 96-212 20-124 (151)
3 3but_A Uncharacterized protein 98.0 6.4E-05 2.2E-09 59.0 11.9 89 120-214 17-106 (136)
4 2bn5_B U1 small nuclear ribonu 45.2 14 0.00047 19.4 1.9 11 35-45 6-16 (26)
5 2knc_B Integrin beta-3; transm 43.2 13 0.00043 25.8 2.1 21 71-91 13-33 (79)
6 2l6w_A Beta-type platelet-deri 41.1 8.1 0.00028 23.0 0.0 9 93-101 31-39 (39)
7 2k9j_B Integrin beta-3; transm 31.8 28 0.00096 21.1 2.1 20 72-91 13-32 (43)
8 3me0_B PAPG protein; immunoglo 31.0 64 0.0022 24.3 4.4 86 94-181 10-109 (128)
9 3s8f_C Cytochrome C oxidase po 29.2 17 0.00059 21.0 0.8 16 76-91 9-24 (34)
10 3hd7_A Vesicle-associated memb 26.6 45 0.0015 23.4 2.8 12 75-86 76-87 (91)
11 1afo_A Glycophorin A; integral 25.8 21 0.00071 21.2 0.7 18 74-91 13-30 (40)
12 3kdp_B Sodium/potassium-transp 25.2 24 0.00082 30.5 1.3 33 79-112 27-62 (286)
13 1m56_D Cytochrome C oxidase; m 21.2 70 0.0024 20.1 2.6 16 70-85 34-49 (51)
14 1fjk_A Cardiac phospholamban; 21.0 73 0.0025 19.5 2.5 10 78-87 41-50 (52)
15 1qle_D Cytochrome AA3, ccytoch 20.9 58 0.002 19.7 2.1 15 70-84 26-40 (43)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.32 E-value=3.8e-06 Score=68.70 Aligned_cols=104 Identities=15% Similarity=0.242 Sum_probs=80.7
Q ss_pred CCCEEEEeeeEEeeeecCCCCceeceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEeeccCCCc-ceecCCCeEEEE
Q 025262 96 ESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDGEWPQ-FYQPSNNVTVFK 174 (255)
Q Consensus 96 ~~P~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~vP~-F~q~~~n~t~~~ 174 (255)
+.|+++++++++.+++.. ...|.+.++++||| .+.+.+.+ ++..+.-+|..|++|..+. +..++++++.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~------~~~~~l~LrV~NPN-~~pLpi~g-i~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~ 114 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD------GVDYHAKVSVKNPY-SQSIPICQ-ISYILKSATRTIASGTIPDPGSLVGSGTTVLD 114 (174)
T ss_dssp CCCEEEEEEEEEEEECSS------SEEEEEEEEEEECS-SSCCBCCS-EEEEEEESSSCEEEEEESCCCBCCSSEEEEEE
T ss_pred CCCEEEEEEeEEeccccc------eEEEEEEEEEECCC-CCCccccc-eEEEEEECCEEEEEEecCCCceECCCCcEEEE
Confidence 789999999999887653 36799999999999 57999997 9999999999999999864 889999999999
Q ss_pred EEEEEcccccCHHHHHHHHHHHhCCCeEEEEEEEEeEE
Q 025262 175 TLLKGSSIELTSAMRKDLVAAQTSGKTVPFKVNLRVPV 212 (255)
Q Consensus 175 ~~l~~~~~~l~~~~~~~L~~d~~~g~~v~l~v~v~~~v 212 (255)
+.++... ....++.+++..++.++.+++++..+
T Consensus 115 Vpv~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 115 VPVKVAY-----SIAVSLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp EEEEESH-----HHHHHTCCCCCSSEEECEEEEEEEEE
T ss_pred EEEEEEH-----HHHHHHHHhcCCCCccceEEEEEEEe
Confidence 9998752 11233334444443566666655443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.17 E-value=1.6e-06 Score=69.37 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=79.4
Q ss_pred CCCEEEEeeeEEeeeecCCCCceeceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEeeccCCC-cceecCCCeEEEE
Q 025262 96 ESPNYSVDGVSIAGLNLTSPSSVVSPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDGEWP-QFYQPSNNVTVFK 174 (255)
Q Consensus 96 ~~P~fsV~s~~v~~~~~~~~~~~ls~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~vP-~F~q~~~n~t~~~ 174 (255)
+.|++++.++++.+++. ...+|.+.++++||| .+.+.+.+ ++..+.-+|..+++|..+ ++..++++++.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~------~~~~~~~~l~V~NPN-~~~lpi~g-i~y~l~vng~~lasG~~~~~~~ipa~g~~~v~ 91 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR------DSVEYLAKVSVTNPY-SHSIPICE-ISFTFHSAGREIGKGKIPDPGSLKAKDMTALD 91 (151)
T ss_dssp CSCCCBCSEEEECCCTT------TEECEEEEEEEECSS-SSCCCCEE-EEEEEESSSSCEEEEEEEECCCCSSSSEEEEE
T ss_pred CCCEEEEEEeEEeccCc------ceeEEEEEEEEECCC-CCCccccc-EEEEEEECCEEEEEEecCCCcEECCCCcEEEE
Confidence 68999999999887654 245799999999999 57999987 899999999999999986 4889999999999
Q ss_pred EEEEEcccccCHHHHHHHHHHHhCCCeEEEEEEEEeEE
Q 025262 175 TLLKGSSIELTSAMRKDLVAAQTSGKTVPFKVNLRVPV 212 (255)
Q Consensus 175 ~~l~~~~~~l~~~~~~~L~~d~~~g~~v~l~v~v~~~v 212 (255)
+.++.... ...++.+++..++.++.+++++..+
T Consensus 92 vpv~v~~~-----~l~~~~~~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 92 IPVVVPYS-----ILFNLARDVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp ECCCEEHH-----HHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred EEEEEEHH-----HHHHHHHhcccCCcccEEEEEEEEE
Confidence 98876532 2333444443333677776666543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.05 E-value=6.4e-05 Score=58.97 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=69.8
Q ss_pred ceEEEEEEEEeCCCCeEEEEECCCeEEEEEECCEEeeccC-CCcceecCCCeEEEEEEEEEcccccCHHHHHHHHHHHhC
Q 025262 120 SPRFDVSVTADNPNDKIGIYYERGSSVEVSYKDVALCDGE-WPQFYQPSNNVTVFKTLLKGSSIELTSAMRKDLVAAQTS 198 (255)
Q Consensus 120 s~~~~~tl~a~NPN~~~~i~Y~~~~~~~v~Y~g~~lg~~~-vP~F~q~~~n~t~~~~~l~~~~~~l~~~~~~~L~~d~~~ 198 (255)
.+.|.+.++++||| .+.+.+++ ++..++.+|..+|+|. ...+..++.+.+.+.+.+..+...+.+...+.| .+
T Consensus 17 ~t~~~~~l~V~NPN-~~~l~i~g-l~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi----~n 90 (136)
T 3but_A 17 QTEIVALAKVRNED-VVPIVVSG-YHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHI----AN 90 (136)
T ss_dssp EEEEEEEEEEECCS-SSCEEEEE-EEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHH----HT
T ss_pred EEEEEEEEEEeCCC-Ccceeeec-eEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHh----hc
Confidence 56799999999999 58999987 8999999999999997 578999999999999999988766665544444 45
Q ss_pred CCeEEEEEEEEeEEEE
Q 025262 199 GKTVPFKVNLRVPVKI 214 (255)
Q Consensus 199 g~~v~l~v~v~~~vr~ 214 (255)
|+.-.++++++..+.+
T Consensus 91 ge~s~l~i~~~~~l~v 106 (136)
T 3but_A 91 GEKTKIRVAIKPTIEI 106 (136)
T ss_dssp TSEEEEEEEEEEEEEC
T ss_pred CCceEEEEEEEEEEEe
Confidence 5455666655554433
No 4
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=45.20 E-value=14 Score=19.35 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=8.0
Q ss_pred ccccccCCCCC
Q 025262 35 KDQIYRVPPPE 45 (255)
Q Consensus 35 k~q~~~~p~p~ 45 (255)
.+.+|+||||.
T Consensus 6 hhnmfsvpppp 16 (26)
T 2bn5_B 6 HHNMFSVPPPP 16 (26)
T ss_dssp CCCCCSCCCCS
T ss_pred cCceecCCCCC
Confidence 34688998875
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.21 E-value=13 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHheeee
Q 025262 71 CCCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 71 ~~~~ll~l~ll~gi~~~i~~l 91 (255)
+.+.+++.++++|++++++|-
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444566667788888888774
No 6
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=41.11 E-value=8.1 Score=23.02 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=5.1
Q ss_pred ecCCCCEEE
Q 025262 93 FRPESPNYS 101 (255)
Q Consensus 93 lrP~~P~fs 101 (255)
..=++|+|+
T Consensus 31 ~w~qKPrYe 39 (39)
T 2l6w_A 31 LWQKKPRYE 39 (39)
Confidence 334677763
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=31.78 E-value=28 Score=21.07 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHheeee
Q 025262 72 CCSLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 72 ~~~ll~l~ll~gi~~~i~~l 91 (255)
...+++.++++|++.+++|-
T Consensus 13 v~gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 13 LLSVMGAILLIGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455557778888887773
No 8
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=31.03 E-value=64 Score=24.32 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=47.3
Q ss_pred cCCCCEEEEeeeEEeeeecCCC--Cce------eceEEEEEEEEeC--C--C--CeEEEEECCCeEEEEEECCEEeeccC
Q 025262 94 RPESPNYSVDGVSIAGLNLTSP--SSV------VSPRFDVSVTADN--P--N--DKIGIYYERGSSVEVSYKDVALCDGE 159 (255)
Q Consensus 94 rP~~P~fsV~s~~v~~~~~~~~--~~~------ls~~~~~tl~a~N--P--N--~~~~i~Y~~~~~~~v~Y~g~~lg~~~ 159 (255)
||..|.+.++.-.++.=++... +.. ..+++.+.++ .| | | +++.+--.++....++-+|+..++..
T Consensus 10 ~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt-~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~ 88 (128)
T 3me0_B 10 RPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLL-RNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETT 88 (128)
T ss_dssp EECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEE-ECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEE
T ss_pred CCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEe-cCCcccccccCceEEecCCCeEEEEEECCeecccee
Confidence 7888999988766543222111 111 1122333332 22 1 1 34556665568888888999888777
Q ss_pred CCcceecCCCeEEEEEEEEEcc
Q 025262 160 WPQFYQPSNNVTVFKTLLKGSS 181 (255)
Q Consensus 160 vP~F~q~~~n~t~~~~~l~~~~ 181 (255)
+ .|+.....+-.+..+|.++.
T Consensus 89 ~-~~~~~~s~tvtV~S~L~g~~ 109 (128)
T 3me0_B 89 M-RWYKAGTQNLTIGSRLYGES 109 (128)
T ss_dssp E-EESSSEEEEEEEEEEEEECS
T ss_pred E-EEEecCCcEEEEEEEEecCc
Confidence 7 44443333455667775544
No 9
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=29.24 E-value=17 Score=20.99 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHheeee
Q 025262 76 LLLVLLLAIAAGVFYL 91 (255)
Q Consensus 76 l~l~ll~gi~~~i~~l 91 (255)
+..++++|++++++|+
T Consensus 9 l~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 9 LAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3345555666666654
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=26.60 E-value=45 Score=23.42 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 025262 75 LLLLVLLLAIAA 86 (255)
Q Consensus 75 ll~l~ll~gi~~ 86 (255)
++++++++.+++
T Consensus 76 ~iv~~il~ii~~ 87 (91)
T 3hd7_A 76 VICAIILIIIIV 87 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 11
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=25.76 E-value=21 Score=21.25 Aligned_cols=18 Identities=6% Similarity=0.432 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHheeee
Q 025262 74 SLLLLVLLLAIAAGVFYL 91 (255)
Q Consensus 74 ~ll~l~ll~gi~~~i~~l 91 (255)
+++++.+++|++..++.+
T Consensus 13 ~lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666665555443
No 12
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=25.16 E-value=24 Score=30.48 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHHHhe---eeeeecCCCCEEEEeeeEEeeeec
Q 025262 79 VLLLAIAAGV---FYLVFRPESPNYSVDGVSIAGLNL 112 (255)
Q Consensus 79 ~ll~gi~~~i---~~lvlrP~~P~fsV~s~~v~~~~~ 112 (255)
++|+|++++. ++..+-|+.|++. +...-.++.+
T Consensus 27 ~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~~~PGL~~ 62 (286)
T 3kdp_B 27 GCLAGIFIGTIQVMLLTISEFKPTYQ-DRVAPPGLTQ 62 (286)
T ss_dssp HHHHHHHHHHHHGGGSCSCSSSCSCC-TTTCSCCCCB
T ss_pred HHHHHHHHHHHHHHHHhCcccCCccc-CCCCCCccee
Confidence 3444444444 4445899999999 6554444443
No 13
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=21.22 E-value=70 Score=20.10 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 025262 70 FCCCSLLLLVLLLAIA 85 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi~ 85 (255)
|.+++++.++++++++
T Consensus 34 ~gt~~~~~~ll~laif 49 (51)
T 1m56_D 34 WAAVVIVAALIFLALA 49 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 14
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=21.02 E-value=73 Score=19.51 Aligned_cols=10 Identities=30% Similarity=0.497 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 025262 78 LVLLLAIAAG 87 (255)
Q Consensus 78 l~ll~gi~~~ 87 (255)
.++++.|++.
T Consensus 41 cllli~iivm 50 (52)
T 1fjk_A 41 FLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 15
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=20.94 E-value=58 Score=19.72 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 025262 70 FCCCSLLLLVLLLAI 84 (255)
Q Consensus 70 ~~~~~ll~l~ll~gi 84 (255)
|.+++++++++++++
T Consensus 26 ~gt~~~~~~ll~mai 40 (43)
T 1qle_D 26 WVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
Done!