Query 025266
Match_columns 255
No_of_seqs 191 out of 512
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 4.7E-58 1E-62 406.0 22.1 220 29-253 6-229 (230)
2 PF02453 Reticulon: Reticulon; 100.0 1.4E-37 3.1E-42 260.3 -7.2 163 67-229 1-169 (169)
3 PF04842 DUF639: Plant protein 97.2 0.0063 1.4E-07 61.7 12.7 134 66-206 505-649 (683)
4 KOG1792 Reticulon [Intracellul 94.2 0.17 3.8E-06 45.4 7.1 81 159-239 42-145 (230)
5 PF08372 PRT_C: Plant phosphor 93.8 0.018 3.8E-07 48.8 0.1 53 40-92 53-110 (156)
6 PF06398 Pex24p: Integral pero 92.3 2.1 4.6E-05 40.2 11.7 22 67-88 32-53 (359)
7 PF08372 PRT_C: Plant phosphor 90.3 1.9 4.1E-05 36.6 8.2 66 147-212 72-137 (156)
8 COG0053 MMT1 Predicted Co/Zn/C 72.4 83 0.0018 29.2 12.4 52 168-220 159-212 (304)
9 PF10112 Halogen_Hydrol: 5-bro 62.3 73 0.0016 27.3 9.1 63 174-236 16-89 (199)
10 PF10256 Erf4: Golgin subfamil 57.3 86 0.0019 24.5 8.1 21 136-160 29-49 (118)
11 PF01484 Col_cuticle_N: Nemato 57.1 43 0.00094 22.2 5.5 13 199-211 15-27 (53)
12 PF04298 Zn_peptidase_2: Putat 56.9 1.4E+02 0.003 26.8 10.0 105 70-197 109-218 (222)
13 PF13677 MotB_plug: Membrane M 45.7 51 0.0011 23.0 4.5 28 179-210 16-43 (58)
14 KOG3488 Dolichol phosphate-man 45.5 43 0.00092 24.9 4.1 34 159-192 38-71 (81)
15 KOG1889 Putative phosphoinosit 42.6 74 0.0016 32.3 6.5 80 54-134 486-576 (579)
16 PF07234 DUF1426: Protein of u 39.7 1.7E+02 0.0037 23.1 6.9 26 184-209 17-42 (117)
17 PF04842 DUF639: Plant protein 39.4 4.5E+02 0.0098 27.5 11.7 58 152-213 498-555 (683)
18 PF05297 Herpes_LMP1: Herpesvi 37.5 11 0.00024 35.3 0.0 9 57-65 20-28 (381)
19 KOG2628 Farnesyl cysteine-carb 34.3 1.7E+02 0.0037 25.9 6.8 62 175-248 137-199 (201)
20 PF01594 UPF0118: Domain of un 34.1 3.5E+02 0.0076 24.3 12.3 41 178-218 130-170 (327)
21 PRK06433 NADH dehydrogenase su 34.0 1.2E+02 0.0025 23.2 5.1 36 70-105 22-58 (88)
22 COG5038 Ca2+-dependent lipid-b 33.4 1.7E+02 0.0036 32.5 7.9 53 168-222 157-209 (1227)
23 PRK15489 nfrB bacteriophage N4 33.4 4.1E+02 0.0089 27.9 10.6 29 184-212 444-476 (703)
24 PF02453 Reticulon: Reticulon; 30.9 19 0.00041 29.4 0.4 27 67-93 100-126 (169)
25 COG1458 Predicted DNA-binding 30.9 73 0.0016 28.3 4.0 39 124-162 79-117 (221)
26 PF11696 DUF3292: Protein of u 29.3 1.6E+02 0.0035 30.4 6.7 50 136-185 87-140 (642)
27 PF13198 DUF4014: Protein of u 27.8 2E+02 0.0044 21.3 5.2 23 198-220 37-59 (72)
28 KOG3747 Concentrative Na+-nucl 27.5 2.2E+02 0.0048 28.8 7.1 40 72-111 149-190 (602)
29 PRK11677 hypothetical protein; 26.6 3.1E+02 0.0067 22.6 6.8 10 211-220 47-56 (134)
30 COG3887 Predicted signaling pr 25.3 6.1E+02 0.013 26.3 9.8 57 185-249 31-87 (655)
31 PHA02677 hypothetical protein; 25.2 1.7E+02 0.0036 23.3 4.7 33 191-223 5-37 (108)
32 KOG0058 Peptide exporter, ABC 24.7 8.5E+02 0.018 25.7 16.4 73 141-227 254-326 (716)
33 PF13994 PgaD: PgaD-like prote 23.8 4E+02 0.0086 21.6 7.3 8 115-122 78-85 (138)
34 PF05062 RICH: RICH domain; I 22.7 1.6E+02 0.0035 22.3 4.1 26 209-234 4-29 (82)
35 PF06881 Elongin_A: RNA polyme 22.4 1.5E+02 0.0032 23.1 4.0 33 204-236 64-96 (109)
36 COG5038 Ca2+-dependent lipid-b 21.1 1.8E+02 0.004 32.2 5.5 48 76-128 155-202 (1227)
37 PF11696 DUF3292: Protein of u 20.5 96 0.0021 32.1 3.2 52 40-92 89-140 (642)
38 PF02238 COX7a: Cytochrome c o 20.4 38 0.00083 23.9 0.3 40 49-94 8-47 (56)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-58 Score=406.03 Aligned_cols=220 Identities=60% Similarity=0.970 Sum_probs=211.1
Q ss_pred CCCCCCCCCCCccchhhccccccCCCCcchhhccCCCcccceecccccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 025266 29 SSSDSDDDKPSSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHIS 108 (255)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~r~f~r~~~~h~~Lgggk~aDlLlWRn~k~Sg~vf~~~t~~w~Lf~l~~yslltlv~~~l 108 (255)
|++|+++++.++++ .+++.+|+|+|++|+|+++|||+++|+++|||++.||++|++++++|++|+..+|+.+|++|+++
T Consensus 6 s~~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ 84 (230)
T KOG1792|consen 6 SSSNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHIL 84 (230)
T ss_pred cccccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34488888877666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc-CCC--CCC-ceecCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHH
Q 025266 109 ILSLAVLFLWSNASTFINK-SPP--EIP-VVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSI 184 (255)
Q Consensus 109 ll~l~~~Fl~s~~~~~i~k-~~~--~~p-~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~ 184 (255)
++.+.+.|.|+++..+++| ++| ..| ++++|||.+++.+++++.++|+.+..+|++++|||+++|++++++||++++
T Consensus 85 ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~ 164 (230)
T KOG1792|consen 85 LLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSY 164 (230)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999888 666 678 999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcCC
Q 025266 185 VGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKK 253 (255)
Q Consensus 185 iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~v~~~~~~i~~~y~~~~~kvl~~v~skIP~~~~k~ 253 (255)
+|+|||++||+|+|++++||+|++||+|||+||+++++++++++++|+++|+|++ +|||+|+.++
T Consensus 165 vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l----~kip~~~~~~ 229 (230)
T KOG1792|consen 165 VGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVL----SKIPAGPRKK 229 (230)
T ss_pred HHHhhhHHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHh----hcCCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999 9999998765
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=1.4e-37 Score=260.33 Aligned_cols=163 Identities=39% Similarity=0.627 Sum_probs=48.0
Q ss_pred ccceecccccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCceecCHH
Q 025266 67 PADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSP------PEIPVVTLPEK 140 (255)
Q Consensus 67 ~aDlLlWRn~k~Sg~vf~~~t~~w~Lf~l~~yslltlv~~~lll~l~~~Fl~s~~~~~i~k~~------~~~p~~~isee 140 (255)
|+|+|+||||+.||++|++++++|+++++.++|++|++|+++++.+++.+++....+++++.+ ++.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 589999999999999999999999999999999999999999999999999888877777654 33447899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 025266 141 FVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFG 220 (255)
Q Consensus 141 ~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~v 220 (255)
.++++++.+.+.+|..+..+|+++.++|++.|++++++||+++++|+++|++||+|++++++||+|.+||+||++||+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~ 160 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV 160 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 025266 221 EKATIEIKK 229 (255)
Q Consensus 221 ~~~~~~i~~ 229 (255)
++++++++|
T Consensus 161 ~~~~~~~~k 169 (169)
T PF02453_consen 161 AKVKEKVKK 169 (169)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 998887764
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.15 E-value=0.0063 Score=61.71 Aligned_cols=134 Identities=18% Similarity=0.160 Sum_probs=90.8
Q ss_pred cccceecccccchhHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--------CCCCCC--c
Q 025266 66 KPADIFLWRNKKISAGVLGGATAMWVLF-ELLEYHLITLVCHISILSLAVLFLWSNASTFINK--------SPPEIP--V 134 (255)
Q Consensus 66 k~aDlLlWRn~k~Sg~vf~~~t~~w~Lf-~l~~yslltlv~~~lll~l~~~Fl~s~~~~~i~k--------~~~~~p--~ 134 (255)
.+.++..|+||.+|..+++..+.+ .+ .|.+| +.-..++.+++..+|.....-.+| .||+.. +
T Consensus 505 ~~~~l~~We~P~kt~~Fl~~~~~i--I~r~wl~Y-----~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvE 577 (683)
T PF04842_consen 505 WLQKLASWEEPLKTLVFLALFLYI--IYRGWLGY-----IFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVE 577 (683)
T ss_pred HHHHHhhccCcchhHHHHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHH
Confidence 456899999999999988887653 32 23333 222333334444456433211222 222211 1
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 025266 135 VTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVP 206 (255)
Q Consensus 135 ~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP 206 (255)
-.+.-..+..-+.......|-++-++|.|++...++.+-++++.|.+++.+-..+.+-.++...++-.||-.
T Consensus 578 qilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre 649 (683)
T PF04842_consen 578 QILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRE 649 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 112222333445666778899999999999999999999999999999999999999999999998888854
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.17 Score=45.38 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=66.6
Q ss_pred HHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc-----------------------hhH
Q 025266 159 VLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKY-----------------------EDK 215 (255)
Q Consensus 159 ~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYeky-----------------------qd~ 215 (255)
...|++.+||.+.++.+.++..++..+-..++..++..++.+++++++.+|.++ |+.
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 466899999999999988888888888888888888888888888888777665 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025266 216 IDSFGEKATIEIKKQYAVFDEKVL 239 (255)
Q Consensus 216 ID~~v~~~~~~i~~~y~~~~~kvl 239 (255)
++++...+..+++...+++++=.+
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~ia~ 145 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRDIAL 145 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888888887776544
No 5
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=93.82 E-value=0.018 Score=48.79 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=37.9
Q ss_pred ccchhhccccccCCCCcchhhccC-----CCcccceecccccchhHHHHHHHHHHHHH
Q 025266 40 SIDAFKSKVFRLFGREKPIHHVLG-----AGKPADIFLWRNKKISAGVLGGATAMWVL 92 (255)
Q Consensus 40 ~~~~~~~~~~r~f~r~~~~h~~Lg-----ggk~aDlLlWRn~k~Sg~vf~~~t~~w~L 92 (255)
++.+++.+..|+-.--.-+-.++| |.++..++.||||..|++...+.+++-+.
T Consensus 53 ~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 53 PPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 456777777777543334566666 67899999999999999888776654333
No 6
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=92.33 E-value=2.1 Score=40.19 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=17.3
Q ss_pred ccceecccccchhHHHHHHHHH
Q 025266 67 PADIFLWRNKKISAGVLGGATA 88 (255)
Q Consensus 67 ~aDlLlWRn~k~Sg~vf~~~t~ 88 (255)
+.++++|+||..+-.++...+.
T Consensus 32 vl~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 32 VLRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHeEEeCCCCcchHHHHHHHH
Confidence 4589999999998877666553
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=90.26 E-value=1.9 Score=36.57 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 025266 147 SALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKY 212 (255)
Q Consensus 147 ~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYeky 212 (255)
+.+...+......++.++.++|+..+..+++++++.+++--+..+..++++..+-.++=|.+-.++
T Consensus 72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~ 137 (156)
T PF08372_consen 72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL 137 (156)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence 344555566678899999999999999999999999888877788888777777777777776543
No 8
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=72.36 E-value=83 Score=29.19 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHH-HHHHhchhHHHHHH
Q 025266 168 DLKKFLGVIAGLWLLSIVG-NWCNFVTLFYIVFVLLHTVP-VIYEKYEDKIDSFG 220 (255)
Q Consensus 168 d~~~~lkv~v~L~vls~iG-s~~s~lTLl~i~~v~~FTvP-~lYekyqd~ID~~v 220 (255)
|...++.+++++- ..+.| -|.+...=+.+++..+.+.- .++|...+.+|+-+
T Consensus 159 D~~ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~ 212 (304)
T COG0053 159 DVLTSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAAL 212 (304)
T ss_pred HHHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 6777777777777 77777 55555555555555555443 66777777777443
No 9
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=62.25 E-value=73 Score=27.33 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHH-----------HHHHHHHHHHHHHHHHHHHH
Q 025266 174 GVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI-----------DSFGEKATIEIKKQYAVFDE 236 (255)
Q Consensus 174 kv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~I-----------D~~v~~~~~~i~~~y~~~~~ 236 (255)
-+++..|+++++|.-.+++--+.++.++++.+.....+++..- .+++.....+.+++++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~~ 89 (199)
T PF10112_consen 16 LIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIEK 89 (199)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666666655566666655555444433222 23455566666666666553
No 10
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=57.32 E-value=86 Score=24.53 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=14.2
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Q 025266 136 TLPEKFVLEFASALRYEINRALAVL 160 (255)
Q Consensus 136 ~isee~v~~~a~~v~~~iN~~l~~l 160 (255)
.||++..+++.+ .+|..+...
T Consensus 29 ~is~~ef~~iI~----~IN~~l~~a 49 (118)
T PF10256_consen 29 YISPEEFEEIIN----TINQILKEA 49 (118)
T ss_pred CCCHHHHHHHHH----HHHHHHHHH
Confidence 388888876655 577776544
No 11
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=57.06 E-value=43 Score=22.17 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh
Q 025266 199 FVLLHTVPVIYEK 211 (255)
Q Consensus 199 ~v~~FTvP~lYek 211 (255)
+.+++++|.+|..
T Consensus 15 ~~~l~~~p~i~~~ 27 (53)
T PF01484_consen 15 LSCLITVPSIYND 27 (53)
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999965
No 12
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=56.86 E-value=1.4e+02 Score=26.85 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=58.2
Q ss_pred eecccccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCceecCHHHHHHHHHHH
Q 025266 70 IFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASAL 149 (255)
Q Consensus 70 lLlWRn~k~Sg~vf~~~t~~w~Lf~l~~yslltlv~~~lll~l~~~Fl~s~~~~~i~k~~~~~p~~~isee~v~~~a~~v 149 (255)
.+-||+.-....-++.-...|+++--.=......+..++++.+++. .+.++ +++|.|.=
T Consensus 109 pl~lRs~lvP~~~~~s~~~~~l~~~G~~l~~~~~l~~~Gi~lf~~~----vlf~l----------vTLPVEfd------- 167 (222)
T PF04298_consen 109 PLRLRSALVPVANIGSNLSWILLILGLFLSSGAGLLWIGIILFSLA----VLFQL----------VTLPVEFD------- 167 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhe----------eechhhhh-------
Confidence 5778998888888888776555542111111122223332222221 12222 23343211
Q ss_pred HHHHHHHHHHHhh--hhccCC---hHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 025266 150 RYEINRALAVLRE--IASGRD---LKKFLGVIAGLWLLSIVGNWCNFVTLFYI 197 (255)
Q Consensus 150 ~~~iN~~l~~lr~--l~~g~d---~~~~lkv~v~L~vls~iGs~~s~lTLl~i 197 (255)
.-|+++..+++ +...++ -++-|.+++..|+.+-+++..+++-++.+
T Consensus 168 --AS~RAl~~L~~~~~l~~~E~~~arkVL~AAAlTYVAaal~sll~llr~l~i 218 (222)
T PF04298_consen 168 --ASRRALPILEEGGILSPEELPGARKVLTAAALTYVAAALSSLLQLLRLLLI 218 (222)
T ss_pred --hhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12556666664 444444 45567888999999999988887777654
No 13
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=45.67 E-value=51 Score=23.03 Aligned_cols=28 Identities=29% Similarity=0.650 Sum_probs=20.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 025266 179 LWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYE 210 (255)
Q Consensus 179 L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYe 210 (255)
.|.++|- ++.||+...|++++++-.+=+
T Consensus 16 ~Wlvtya----DlmTLLl~fFVlL~s~s~~d~ 43 (58)
T PF13677_consen 16 RWLVTYA----DLMTLLLAFFVLLFSMSSVDK 43 (58)
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHhCCH
Confidence 3555554 899999999999888765433
No 14
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=45.52 E-value=43 Score=24.90 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=27.9
Q ss_pred HHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhH
Q 025266 159 VLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFV 192 (255)
Q Consensus 159 ~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~l 192 (255)
..+..++-|++.-.+-++++++.+..+|-+.+..
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~v 71 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLV 71 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3567888889989999999999999999765544
No 15
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=42.59 E-value=74 Score=32.27 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=51.1
Q ss_pred CCcchhhccCCCcccceec----------ccccchhHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHH
Q 025266 54 REKPIHHVLGAGKPADIFL----------WRNKKISAGVLGGATAMWVLFELL-EYHLITLVCHISILSLAVLFLWSNAS 122 (255)
Q Consensus 54 r~~~~h~~Lgggk~aDlLl----------WRn~k~Sg~vf~~~t~~w~Lf~l~-~yslltlv~~~lll~l~~~Fl~s~~~ 122 (255)
||.+..-+||+=.+.+... |+--...++.+.+.+. ..+-.++ .-+++-.+.+.+++++...+++.+..
T Consensus 486 rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m-~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~ 564 (579)
T KOG1889|consen 486 RQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSM-FIISLLFSTPNLLYRLFWFAIMVVSIAVILINGD 564 (579)
T ss_pred ccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHH-HHHHHHhCCchHHHHHHHHHHHHHHHHhheechH
Confidence 7788888888877777664 5444443333333332 2222222 35666677777777777777888888
Q ss_pred hhhccCCCCCCc
Q 025266 123 TFINKSPPEIPV 134 (255)
Q Consensus 123 ~~i~k~~~~~p~ 134 (255)
+++|++....|.
T Consensus 565 ~fvnwPrl~~p~ 576 (579)
T KOG1889|consen 565 QFVNWPRLVLPQ 576 (579)
T ss_pred HhcCCccccCcc
Confidence 999998766654
No 16
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=39.65 E-value=1.7e+02 Score=23.15 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHH
Q 025266 184 IVGNWCNFVTLFYIVFVLLHTVPVIY 209 (255)
Q Consensus 184 ~iGs~~s~lTLl~i~~v~~FTvP~lY 209 (255)
++|.+|--.|++||...++|-+|+--
T Consensus 17 F~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 17 FFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 46777888999999999999999643
No 17
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=39.42 E-value=4.5e+02 Score=27.52 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhch
Q 025266 152 EINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYE 213 (255)
Q Consensus 152 ~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYekyq 213 (255)
-+......++.+..++|+.+++.++++.+.+-|-| | +.-++-.+++...+-+++.+|+
T Consensus 498 Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~-w---l~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 498 PLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRG-W---LGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred cHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHhh
Confidence 34555678999999999999987776555544433 2 1122223444455556667776
No 18
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=37.46 E-value=11 Score=35.28 Aligned_cols=9 Identities=33% Similarity=0.198 Sum_probs=0.0
Q ss_pred chhhccCCC
Q 025266 57 PIHHVLGAG 65 (255)
Q Consensus 57 ~~h~~Lggg 65 (255)
|.|.-|+=|
T Consensus 20 ~~~a~l~~~ 28 (381)
T PF05297_consen 20 QPHASLLFG 28 (381)
T ss_dssp ---------
T ss_pred CcchhHHHH
Confidence 455555433
No 19
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.32 E-value=1.7e+02 Score=25.86 Aligned_cols=62 Identities=27% Similarity=0.281 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 025266 175 VIAGLWLLSIVGNWCNFVTLFYI-VFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPK 248 (255)
Q Consensus 175 v~v~L~vls~iGs~~s~lTLl~i-~~v~~FTvP~lYekyqd~ID~~v~~~~~~i~~~y~~~~~kvl~~v~skIP~ 248 (255)
+...+|.++.---+||...++.. .++--|--|.+++.=++.|.-+ .++|.+.++||- ++||.
T Consensus 137 ~g~flw~~gtq~~L~npis~v~f~~V~w~ff~~Ri~~EE~~Li~fF--------g~~Y~eY~kkV~----sGiPf 199 (201)
T KOG2628|consen 137 VGFFLWAAGTQTMLCNPISLVAFLLVVWRFFADRIKEEEKYLISFF--------GSSYVEYAKKVP----SGIPF 199 (201)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--------hHHHHHHHHhCC----cCCCC
Confidence 45677777776667777766544 5556677788877766665544 456777777777 99996
No 20
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=34.14 E-value=3.5e+02 Score=24.33 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 025266 178 GLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDS 218 (255)
Q Consensus 178 ~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~ 218 (255)
.-++.+.+++..++..=+.+..+..|-.=.=.++.++.+.+
T Consensus 130 ~~~~~~~~~~~~~~l~~~~i~l~~~~~~l~~~~~~~~~~~~ 170 (327)
T PF01594_consen 130 LSSLSSFISSIFSFLFNFFIFLIFLFFFLLDGEKLRRFLIR 170 (327)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44445555555444433333333333332333333333333
No 21
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=34.00 E-value=1.2e+02 Score=23.20 Aligned_cols=36 Identities=31% Similarity=0.245 Sum_probs=21.7
Q ss_pred eecccccchhHHHHHHHHHHH-HHHHHhcchhHHHHH
Q 025266 70 IFLWRNKKISAGVLGGATAMW-VLFELLEYHLITLVC 105 (255)
Q Consensus 70 lLlWRn~k~Sg~vf~~~t~~w-~Lf~l~~yslltlv~ 105 (255)
++.+||+-.|+..++.....- .+|.+.+..++.+.-
T Consensus 22 vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~q 58 (88)
T PRK06433 22 VVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQ 58 (88)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 567899999988776544221 233445666655443
No 22
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=33.44 E-value=1.7e+02 Score=32.48 Aligned_cols=53 Identities=17% Similarity=0.394 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 025266 168 DLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 222 (255)
Q Consensus 168 d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~v~~ 222 (255)
+....+...++.|+++++| |+++.|+++..++.+..=.-+++|..-|-.-+.+
T Consensus 157 s~~i~l~~~v~Swifg~~~--fs~~slffii~~~~~vY~~~~~rv~rnird~v~~ 209 (1227)
T COG5038 157 SVAIVLIGSVASWIFGYLG--FSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQ 209 (1227)
T ss_pred hhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778888888886 8899999999888887777777777666544433
No 23
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=33.38 E-value=4.1e+02 Score=27.87 Aligned_cols=29 Identities=28% Similarity=0.608 Sum_probs=16.2
Q ss_pred HHhhhhhhHHHHHHHHHHH----HHHHHHHHhc
Q 025266 184 IVGNWCNFVTLFYIVFVLL----HTVPVIYEKY 212 (255)
Q Consensus 184 ~iGs~~s~lTLl~i~~v~~----FTvP~lYeky 212 (255)
.+|+++||+..+-.-...+ ..=|...+|=
T Consensus 444 ~~~n~in~~a~~ra~~~~~~~~~~~~~~~wdkt 476 (703)
T PRK15489 444 VVGNFINFMAVCRAWRIFLIYLVTGKPIVWDKT 476 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcccccc
Confidence 4788888877654322222 4445555553
No 24
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=30.93 E-value=19 Score=29.43 Aligned_cols=27 Identities=15% Similarity=-0.071 Sum_probs=11.7
Q ss_pred ccceecccccchhHHHHHHHHHHHHHH
Q 025266 67 PADIFLWRNKKISAGVLGGATAMWVLF 93 (255)
Q Consensus 67 ~aDlLlWRn~k~Sg~vf~~~t~~w~Lf 93 (255)
..+++.|+|++.|..++++..++..+.
T Consensus 100 ~~~l~~~~~~~~~l~~~~~l~~l~~lg 126 (169)
T PF02453_consen 100 LRRLVFGEDPKKSLKVFVVLYILSFLG 126 (169)
T ss_dssp HHCCCHCT-TTGGG-------------
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 568999999999999877765544443
No 25
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=30.88 E-value=73 Score=28.30 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=31.3
Q ss_pred hhccCCCCCCceecCHHHHHHHHHHHHHHHHHHHHHHhh
Q 025266 124 FINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLRE 162 (255)
Q Consensus 124 ~i~k~~~~~p~~~isee~v~~~a~~v~~~iN~~l~~lr~ 162 (255)
.+-+.+|+..++.||-+.+.+.+..++..+|+++...-+
T Consensus 79 wivkKtPnryevkiPa~ifyeyV~diR~RinkGlRvAE~ 117 (221)
T COG1458 79 WIVKKTPNRYEVKIPAAIFYEYVEDIRERINKGLRVAEE 117 (221)
T ss_pred eeEecCCCceeecCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 344555666689999999999999999999999865444
No 26
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=29.34 E-value=1.6e+02 Score=30.45 Aligned_cols=50 Identities=6% Similarity=0.072 Sum_probs=31.9
Q ss_pred ecCHHHH----HHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHH
Q 025266 136 TLPEKFV----LEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIV 185 (255)
Q Consensus 136 ~isee~v----~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~i 185 (255)
+.|.+.. +++--.+..-+-.+...+.+|-++++.+.+..++++.++..++
T Consensus 87 ~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~ 140 (642)
T PF11696_consen 87 EFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLL 140 (642)
T ss_pred cCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 4444444 4444445555666667888899999999988666554444443
No 27
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=27.76 E-value=2e+02 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhchhHHHHHH
Q 025266 198 VFVLLHTVPVIYEKYEDKIDSFG 220 (255)
Q Consensus 198 ~~v~~FTvP~lYekyqd~ID~~v 220 (255)
.+.+..+.-.+.|+|.+.+-..-
T Consensus 37 ~~~i~~~~E~l~e~Y~~~~w~~F 59 (72)
T PF13198_consen 37 VWIIGKIIEPLFELYKDWFWNPF 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444555555555555544433
No 28
>KOG3747 consensus Concentrative Na+-nucleoside cotransporter CNT1/CNT2 [Nucleotide transport and metabolism; Inorganic ion transport and metabolism]
Probab=27.50 E-value=2.2e+02 Score=28.85 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=26.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHH
Q 025266 72 LWRNKKISAGVLGGATAMWVLFELLE--YHLITLVCHISILS 111 (255)
Q Consensus 72 lWRn~k~Sg~vf~~~t~~w~Lf~l~~--yslltlv~~~lll~ 111 (255)
.|--+-.....|.+++++|+.|+..+ +-++++..++..+.
T Consensus 149 ~w~v~~~~~~~~l~~l~~~l~~dt~~~~~qLv~f~g~v~fIl 190 (602)
T KOG3747|consen 149 LWFVSLVAKAAFLAALVAWLIFDTRQDPQQLVGFGGPVFFIL 190 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccHHHhhccccHHHHHH
Confidence 45556666777788888999998764 45566665555433
No 29
>PRK11677 hypothetical protein; Provisional
Probab=26.61 E-value=3.1e+02 Score=22.63 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=4.5
Q ss_pred hchhHHHHHH
Q 025266 211 KYEDKIDSFG 220 (255)
Q Consensus 211 kyqd~ID~~v 220 (255)
+|+.++..+.
T Consensus 47 ~YkqeV~~HF 56 (134)
T PRK11677 47 EYRQELVSHF 56 (134)
T ss_pred HHHHHHHHHH
Confidence 3554444433
No 30
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=25.27 E-value=6.1e+02 Score=26.32 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=29.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 025266 185 VGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKG 249 (255)
Q Consensus 185 iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~v~~~~~~i~~~y~~~~~kvl~~v~skIP~~ 249 (255)
-|+|.+...++.++++..|.+-..+.-||+..-.+++.. +.+....-+..+ -..|.|
T Consensus 31 ~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~l----s~~~~~~~~~al----~nmPiG 87 (655)
T COG3887 31 FNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYL----SYQAEKSLEEAL----TNMPIG 87 (655)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HhCCce
Confidence 344444444444444444444444444554444466664 455555556666 777876
No 31
>PHA02677 hypothetical protein; Provisional
Probab=25.20 E-value=1.7e+02 Score=23.33 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 025266 191 FVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKA 223 (255)
Q Consensus 191 ~lTLl~i~~v~~FTvP~lYekyqd~ID~~v~~~ 223 (255)
|+-|+|...+.=..+|.+.||-+.+=|++..-.
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888888888899999999999999987654
No 32
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.69 E-value=8.5e+02 Score=25.75 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 025266 141 FVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFG 220 (255)
Q Consensus 141 ~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~v 220 (255)
.+..+.+++...+|.++..+-..+- .++.++.+|+ ..-++.++.+-..+.++++|-+|.+++-...
T Consensus 254 D~~~vs~svs~nls~~lR~~~~~~g---------~~~~M~~~S~-----~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~ 319 (716)
T KOG0058|consen 254 DTQIVSNSVSQNLSDGLRNLVQGFG---------GLGFMFSLSW-----RLTLVTLIVVPIVALVAKIYGKYLRKLSKQT 319 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHhhhhH-----HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888887654433222 2233333333 2222344456667778888988888887777
Q ss_pred HHHHHHH
Q 025266 221 EKATIEI 227 (255)
Q Consensus 221 ~~~~~~i 227 (255)
+.+..+.
T Consensus 320 Q~a~A~a 326 (716)
T KOG0058|consen 320 QDALARA 326 (716)
T ss_pred HHHHHHH
Confidence 6665554
No 33
>PF13994 PgaD: PgaD-like protein
Probab=23.76 E-value=4e+02 Score=21.60 Aligned_cols=8 Identities=38% Similarity=0.991 Sum_probs=4.9
Q ss_pred HHHHHHHH
Q 025266 115 LFLWSNAS 122 (255)
Q Consensus 115 ~Fl~s~~~ 122 (255)
+++|+..-
T Consensus 78 Li~Wa~yn 85 (138)
T PF13994_consen 78 LILWAKYN 85 (138)
T ss_pred HHHHHHHH
Confidence 45777654
No 34
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=22.66 E-value=1.6e+02 Score=22.34 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=21.4
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHH
Q 025266 209 YEKYEDKIDSFGEKATIEIKKQYAVF 234 (255)
Q Consensus 209 Yekyqd~ID~~v~~~~~~i~~~y~~~ 234 (255)
.+++.++|+.|+++...+++++..+-
T Consensus 4 ~~Ka~~~V~~y~~kiL~ei~~~L~k~ 29 (82)
T PF05062_consen 4 RKKAKDEVDEYMEKILSEIKKQLDKR 29 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999998887666553
No 35
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=22.37 E-value=1.5e+02 Score=23.07 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 025266 204 TVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDE 236 (255)
Q Consensus 204 TvP~lYekyqd~ID~~v~~~~~~i~~~y~~~~~ 236 (255)
+.=-+|.+|+++-|.....+...+++.++..+.
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999999999999998887664
No 36
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=21.14 E-value=1.8e+02 Score=32.18 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025266 76 KKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKS 128 (255)
Q Consensus 76 ~k~Sg~vf~~~t~~w~Lf~l~~yslltlv~~~lll~l~~~Fl~s~~~~~i~k~ 128 (255)
+.-++++|+++.+.|++- |.-+++.+..++ .+...++|..-..-.+|+
T Consensus 155 ~qs~~i~l~~~v~Swifg----~~~fs~~slffi-i~~~~~vY~~~~~rv~rn 202 (1227)
T COG5038 155 YQSVAIVLIGSVASWIFG----YLGFSFASLFFI-ILVTMYVYRTCIKRVRRN 202 (1227)
T ss_pred hhhhhHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345678888887776553 333443333322 233345777544434433
No 37
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=20.54 E-value=96 Score=32.06 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=34.1
Q ss_pred ccchhhccccccCCCCcchhhccCCCcccceecccccchhHHHHHHHHHHHHH
Q 025266 40 SIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVL 92 (255)
Q Consensus 40 ~~~~~~~~~~r~f~r~~~~h~~Lgggk~aDlLlWRn~k~Sg~vf~~~t~~w~L 92 (255)
+|+...+.+-|++--=-+ --+-+.-.++.|-.||+|++|+...++=++.|++
T Consensus 89 spdkLRa~lERlY~tv~v-~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~ 140 (642)
T PF11696_consen 89 SPDKLRANLERLYMTVVV-GLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLL 140 (642)
T ss_pred ChHHHHHHhHhheeehHH-HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 467788888888632211 1111122367899999999999888776666655
No 38
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=20.45 E-value=38 Score=23.87 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=22.3
Q ss_pred cccCCCCcchhhccCCCcccceecccccchhHHHHHHHHHHHHHHH
Q 025266 49 FRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFE 94 (255)
Q Consensus 49 ~r~f~r~~~~h~~Lgggk~aDlLlWRn~k~Sg~vf~~~t~~w~Lf~ 94 (255)
.|+|-.+.-. ..|.||..-|+|+ .+...++.+-+.|.++.
T Consensus 8 Qk~FQ~~~g~-vhLKGg~~D~~Ly-----~~Tm~L~~~gt~~~l~~ 47 (56)
T PF02238_consen 8 QKLFQEDNGH-VHLKGGYMDDILY-----RVTMPLTVAGTSYCLYG 47 (56)
T ss_dssp HHHHHSSSS--TTTTT-HHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCc-EEecCCcccchHH-----HHHHHHHHHHHHHHHHH
Confidence 5667666555 6788888777776 44444444434444443
Done!