Query 025266
Match_columns 255
No_of_seqs 191 out of 512
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.2 1.4E-07 4.7E-12 69.9 -0.1 58 117-174 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.6 1.4E-06 4.9E-11 61.3 -4.6 51 118-168 3-60 (60)
3 2knc_A Integrin alpha-IIB; tra 41.9 48 0.0016 22.2 4.8 29 101-131 17-45 (54)
4 2l8s_A Integrin alpha-1; trans 41.6 50 0.0017 22.2 4.8 29 101-131 14-42 (54)
5 2k1a_A Integrin alpha-IIB; sin 28.8 78 0.0027 20.0 3.9 27 101-129 15-41 (42)
6 2xvc_A ESCRT-III, SSO0910; cel 18.5 71 0.0024 21.8 2.3 21 1-21 1-21 (59)
7 1w53_A Phosphoserine phosphata 14.4 1.8E+02 0.0062 21.0 3.8 36 204-239 3-38 (84)
8 2wuj_A Septum site-determining 13.7 2.3E+02 0.008 18.6 4.0 21 213-233 22-42 (57)
9 2np0_B Synaptotagmin-2; botuli 13.2 93 0.0032 17.4 1.5 17 231-248 8-24 (26)
10 3arc_L Photosystem II reaction 11.8 2E+02 0.007 17.6 2.8 20 193-212 15-34 (37)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.23 E-value=1.4e-07 Score=69.90 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred HHHHHHhhhccCCCCCC-------ceecCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHH
Q 025266 117 LWSNASTFINKSPPEIP-------VVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLG 174 (255)
Q Consensus 117 l~s~~~~~i~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lk 174 (255)
+|..+.+.++|++..+| |+.+|+|.++++++.+...+|.++..+|++++++|+.+|+|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 78899999999998888 88999999999999999999999999999999999998874
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.55 E-value=1.4e-06 Score=61.27 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=44.4
Q ss_pred HHHHHhhhccCCCCCC-------ceecCHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 025266 118 WSNASTFINKSPPEIP-------VVTLPEKFVLEFASALRYEINRALAVLREIASGRD 168 (255)
Q Consensus 118 ~s~~~~~i~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d 168 (255)
|..+.+.++|++..+| |+.+|+|.+++.++.+..++|.++..+|++++++|
T Consensus 3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 3445566778877777 88999999999999999999999999999999987
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.89 E-value=48 Score=22.21 Aligned_cols=29 Identities=21% Similarity=0.592 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 025266 101 ITLVCHISILSLAVLFLWSNASTFINKSPPE 131 (255)
Q Consensus 101 ltlv~~~lll~l~~~Fl~s~~~~~i~k~~~~ 131 (255)
+++++-++++++++..+|. ++|++|..++
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~ 45 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCC
Confidence 5666666666776667786 5788877543
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=41.60 E-value=50 Score=22.18 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 025266 101 ITLVCHISILSLAVLFLWSNASTFINKSPPE 131 (255)
Q Consensus 101 ltlv~~~lll~l~~~Fl~s~~~~~i~k~~~~ 131 (255)
+++++-++++++++..+|. ++|++|..++
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 5566666666676667786 5788887553
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=28.76 E-value=78 Score=20.03 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 025266 101 ITLVCHISILSLAVLFLWSNASTFINKSP 129 (255)
Q Consensus 101 ltlv~~~lll~l~~~Fl~s~~~~~i~k~~ 129 (255)
+++++-++++++.+..+|. ++|++|..
T Consensus 15 ~s~l~GLllL~li~~~LwK--~GFFkR~~ 41 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWK--VGFFKRNR 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCC
Confidence 5556666666666666775 46777653
No 6
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=18.52 E-value=71 Score=21.77 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=13.8
Q ss_pred CCCCCCCCCCchhhHHHHHHh
Q 025266 1 MAEHAPEHESSDKSLVEKITD 21 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (255)
||+|.++++.+.+.++|-|..
T Consensus 1 ~~~~~~~~~~~e~~lL~yIr~ 21 (59)
T 2xvc_A 1 MAHHHHHHMITERELLDYIVN 21 (59)
T ss_dssp ---CCCSCCCCHHHHHHHHHH
T ss_pred CCccchhhhccHHHHHHHHHH
Confidence 788877677788888888765
No 7
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=14.41 E-value=1.8e+02 Score=21.02 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025266 204 TVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVL 239 (255)
Q Consensus 204 TvP~lYekyqd~ID~~v~~~~~~i~~~y~~~~~kvl 239 (255)
+.+.+.++|++.+|.++..-.++.-.+-++|...++
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~i 38 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTI 38 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHH
Confidence 456788999999999998877777777777777765
No 8
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=13.72 E-value=2.3e+02 Score=18.56 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 025266 213 EDKIDSFGEKATIEIKKQYAV 233 (255)
Q Consensus 213 qd~ID~~v~~~~~~i~~~y~~ 233 (255)
+++||.++..+...+...+..
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e 42 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRK 42 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999998887666555444
No 9
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=13.23 E-value=93 Score=17.45 Aligned_cols=17 Identities=18% Similarity=0.493 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhhccCCC
Q 025266 231 YAVFDEKVLKKVLSRIPK 248 (255)
Q Consensus 231 y~~~~~kvl~~v~skIP~ 248 (255)
+.+..+|+.+++ +|||.
T Consensus 8 ~~~~k~kf~nel-~kipl 24 (26)
T 2np0_B 8 FAKLKEKFFNEI-NKXXX 24 (26)
T ss_pred HHHHHHHHHHHH-Hhhhc
Confidence 344455667777 77775
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=11.78 E-value=2e+02 Score=17.58 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 025266 193 TLFYIVFVLLHTVPVIYEKY 212 (255)
Q Consensus 193 TLl~i~~v~~FTvP~lYeky 212 (255)
|=+|.|.++.|.+-+++..|
T Consensus 15 TSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhh
Confidence 45566666666666666554
Done!