Query 025266
Match_columns 255
No_of_seqs 191 out of 512
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 06:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025266.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025266hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 41.6 17 0.0013 23.0 4.4 30 134-163 27-56 (69)
2 d1h2vc1 a.118.1.14 (C:29-290) 28.8 84 0.0061 24.9 7.7 31 197-227 141-175 (262)
3 d2gaua1 a.4.5.4 (A:152-232) Tr 21.1 57 0.0041 20.7 4.2 30 134-163 27-56 (81)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 16.3 60 0.0044 18.4 2.8 20 193-212 15-34 (37)
5 d2zcwa1 a.4.5.4 (A:118-199) Tr 11.3 66 0.0048 20.5 2.4 30 134-163 27-56 (82)
6 d1kqfb2 f.23.22.1 (B:246-290) 9.9 67 0.0049 19.2 1.8 19 70-88 5-23 (45)
7 d1cjba_ c.61.1.1 (A:) Hypoxant 9.3 38 0.0027 26.7 0.5 31 202-232 28-65 (228)
8 d1ft9a1 a.4.5.4 (A:134-213) CO 8.9 1.8E+02 0.013 18.1 3.9 30 134-163 28-57 (80)
9 d1zyba1 a.4.5.4 (A:148-220) Pr 8.8 1.2E+02 0.0087 19.0 2.9 31 133-163 24-54 (73)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 8.7 2.7E+02 0.019 18.3 6.7 18 192-209 8-25 (158)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.63 E-value=17 Score=22.97 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=27.6
Q ss_pred ceecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025266 134 VVTLPEKFVLEFASALRYEINRALAVLREI 163 (255)
Q Consensus 134 ~~~isee~v~~~a~~v~~~iN~~l~~lr~l 163 (255)
.+.++++.+.+++..-++.+|+.+..+++-
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~ 56 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQ 56 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 678999999999999999999999999873
No 2
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.78 E-value=84 Score=24.90 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=22.0
Q ss_pred HHHHHHHHHHH----HHHhchhHHHHHHHHHHHHH
Q 025266 197 IVFVLLHTVPV----IYEKYEDKIDSFGEKATIEI 227 (255)
Q Consensus 197 i~~v~~FTvP~----lYekyqd~ID~~v~~~~~~i 227 (255)
++.+.+.|+|- +|++..++.++.++.+...+
T Consensus 141 ~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~ 175 (262)
T d1h2vc1 141 YVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYL 175 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45567777774 57788888888887765544
No 3
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=21.06 E-value=57 Score=20.65 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=26.8
Q ss_pred ceecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025266 134 VVTLPEKFVLEFASALRYEINRALAVLREI 163 (255)
Q Consensus 134 ~~~isee~v~~~a~~v~~~iN~~l~~lr~l 163 (255)
.+.++.+.+.+++..-++.+|+.+..+++-
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~ 56 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSE 56 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999999874
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.28 E-value=60 Score=18.37 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 025266 193 TLFYIVFVLLHTVPVIYEKY 212 (255)
Q Consensus 193 TLl~i~~v~~FTvP~lYeky 212 (255)
|-+|.|.++.|.+-+++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554
No 5
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.32 E-value=66 Score=20.52 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=26.9
Q ss_pred ceecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025266 134 VVTLPEKFVLEFASALRYEINRALAVLREI 163 (255)
Q Consensus 134 ~~~isee~v~~~a~~v~~~iN~~l~~lr~l 163 (255)
.+.++.+.+.+++..-++.+|+.+..+++-
T Consensus 27 ~i~lt~~elA~~lg~sr~tv~r~L~~l~~~ 56 (82)
T d2zcwa1 27 VLKATHDELAAAVGSVRETVTKVIGELARE 56 (82)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 467899999999999999999999999873
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=9.95 E-value=67 Score=19.19 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=13.7
Q ss_pred eecccccchhHHHHHHHHH
Q 025266 70 IFLWRNKKISAGVLGGATA 88 (255)
Q Consensus 70 lLlWRn~k~Sg~vf~~~t~ 88 (255)
+-+||+.-+....++.+.+
T Consensus 5 V~lWKgv~Kpl~~~~~~~~ 23 (45)
T d1kqfb2 5 VSLWKGALKPLAAAGFIAT 23 (45)
T ss_dssp HHHHHTTHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHH
Confidence 4579998888777766544
No 7
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=9.34 E-value=38 Score=26.71 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=22.9
Q ss_pred HHHHHHHHHhc-------hhHHHHHHHHHHHHHHHHHH
Q 025266 202 LHTVPVIYEKY-------EDKIDSFGEKATIEIKKQYA 232 (255)
Q Consensus 202 ~FTvP~lYeky-------qd~ID~~v~~~~~~i~~~y~ 232 (255)
+|++|-.|++| +++|.+-++....++.+.|+
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y~ 65 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYN 65 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHcC
Confidence 58899999988 45677777777777766653
No 8
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=8.91 E-value=1.8e+02 Score=18.11 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=26.3
Q ss_pred ceecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025266 134 VVTLPEKFVLEFASALRYEINRALAVLREI 163 (255)
Q Consensus 134 ~~~isee~v~~~a~~v~~~iN~~l~~lr~l 163 (255)
.+.++.+.+.+++..-++.+|+.+..+++-
T Consensus 28 ~~~~t~~eiA~~lG~sretvsr~l~~l~~~ 57 (80)
T d1ft9a1 28 SVDFTVEEIANLIGSSRQTTSTALNSLIKE 57 (80)
T ss_dssp EECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356789999999999999999999999873
No 9
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=8.79 E-value=1.2e+02 Score=19.02 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=27.5
Q ss_pred CceecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025266 133 PVVTLPEKFVLEFASALRYEINRALAVLREI 163 (255)
Q Consensus 133 p~~~isee~v~~~a~~v~~~iN~~l~~lr~l 163 (255)
..+.++.+.+.++...-++.+|+.+..+++-
T Consensus 24 ~~i~lt~~elA~~lg~sr~tvsr~l~~l~~~ 54 (73)
T d1zyba1 24 KTFKVKMDDLARCLDDTRLNISKTLNELQDN 54 (73)
T ss_dssp EEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred eEeecCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999873
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.74 E-value=2.7e+02 Score=18.31 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025266 192 VTLFYIVFVLLHTVPVIY 209 (255)
Q Consensus 192 lTLl~i~~v~~FTvP~lY 209 (255)
.++++||++.+..+|.+-
T Consensus 8 VViaIIgILaaia~P~~~ 25 (158)
T d2pila_ 8 IVIAIVGILAAVALPAYQ 25 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788899999999743
Done!