Query 025268
Match_columns 255
No_of_seqs 276 out of 1458
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b72_A Protein (homeobox prote 99.8 6.6E-20 2.3E-24 141.3 7.3 87 2-104 7-93 (97)
2 2r5y_A Homeotic protein sex co 99.8 1.1E-19 3.8E-24 137.6 6.6 81 3-103 6-86 (88)
3 2vi6_A Homeobox protein nanog; 99.7 1.3E-18 4.4E-23 123.3 5.5 60 44-103 2-61 (62)
4 2h1k_A IPF-1, pancreatic and d 99.7 2.6E-18 8.8E-23 122.2 7.0 59 45-103 3-61 (63)
5 1b8i_A Ultrabithorax, protein 99.7 1.8E-18 6.2E-23 129.1 6.4 61 44-104 19-79 (81)
6 2dmu_A Homeobox protein goosec 99.7 3.2E-18 1.1E-22 124.1 6.8 62 43-104 5-66 (70)
7 2cra_A Homeobox protein HOX-B1 99.7 2.3E-18 7.9E-23 124.9 5.8 62 43-104 5-66 (70)
8 2cue_A Paired box protein PAX6 99.7 4E-18 1.4E-22 126.8 7.3 63 43-105 5-67 (80)
9 1nk2_P Homeobox protein VND; h 99.7 3.2E-18 1.1E-22 126.4 6.3 64 44-107 8-71 (77)
10 2e1o_A Homeobox protein PRH; D 99.7 4.6E-18 1.6E-22 123.3 6.9 62 43-104 5-66 (70)
11 2dmt_A Homeobox protein BARH-l 99.7 3.5E-18 1.2E-22 127.1 6.1 61 44-104 16-76 (80)
12 1ig7_A Homeotic protein MSX-1; 99.7 6.5E-18 2.2E-22 117.9 7.0 57 46-102 1-57 (58)
13 2dmq_A LIM/homeobox protein LH 99.7 6.5E-18 2.2E-22 125.4 7.3 62 43-104 5-66 (80)
14 2hdd_A Protein (engrailed home 99.7 5.4E-18 1.8E-22 119.7 6.3 58 45-102 3-60 (61)
15 2da2_A Alpha-fetoprotein enhan 99.7 4.5E-18 1.5E-22 123.2 6.0 62 43-104 5-66 (70)
16 2ecc_A Homeobox and leucine zi 99.7 4.9E-18 1.7E-22 125.7 6.3 59 46-104 4-62 (76)
17 2da3_A Alpha-fetoprotein enhan 99.7 2.6E-18 8.9E-23 127.3 4.7 62 43-104 15-76 (80)
18 2dms_A Homeobox protein OTX2; 99.7 5.7E-18 1.9E-22 125.9 6.3 62 43-104 5-66 (80)
19 1puf_A HOX-1.7, homeobox prote 99.7 1.2E-17 4.1E-22 123.3 7.9 62 44-105 12-73 (77)
20 1zq3_P PRD-4, homeotic bicoid 99.7 9.9E-18 3.4E-22 121.0 7.1 60 45-104 2-61 (68)
21 3a01_A Homeodomain-containing 99.7 4.7E-18 1.6E-22 130.1 5.7 64 44-107 16-79 (93)
22 2da1_A Alpha-fetoprotein enhan 99.7 5.5E-18 1.9E-22 122.7 5.5 62 43-104 5-66 (70)
23 2djn_A Homeobox protein DLX-5; 99.7 4.5E-18 1.5E-22 123.4 5.0 62 43-104 5-66 (70)
24 1uhs_A HOP, homeodomain only p 99.7 1.4E-17 4.7E-22 121.4 7.2 59 46-104 2-61 (72)
25 1fjl_A Paired protein; DNA-bin 99.7 1.6E-17 5.3E-22 123.8 7.5 61 44-104 17-77 (81)
26 1yz8_P Pituitary homeobox 2; D 99.7 4.4E-18 1.5E-22 122.8 4.1 61 44-104 2-62 (68)
27 1jgg_A Segmentation protein EV 99.7 1.3E-17 4.5E-22 117.3 6.5 58 46-103 2-59 (60)
28 1ahd_P Antennapedia protein mu 99.7 1.1E-17 3.8E-22 120.8 6.1 59 46-104 3-61 (68)
29 2l7z_A Homeobox protein HOX-A1 99.7 1.6E-17 5.4E-22 121.6 6.9 61 44-104 6-66 (73)
30 3rkq_A Homeobox protein NKX-2. 99.7 1.4E-17 4.9E-22 115.7 6.4 57 45-101 2-58 (58)
31 2da5_A Zinc fingers and homeob 99.7 1.2E-17 4.1E-22 122.9 6.0 60 45-104 7-66 (75)
32 1bw5_A ISL-1HD, insulin gene e 99.7 1.3E-17 4.6E-22 119.4 6.1 60 45-104 3-62 (66)
33 2kt0_A Nanog, homeobox protein 99.7 1.1E-17 3.8E-22 125.2 5.9 62 43-104 20-81 (84)
34 1ftt_A TTF-1 HD, thyroid trans 99.7 1.8E-17 6.1E-22 119.6 6.7 59 46-104 3-61 (68)
35 3a03_A T-cell leukemia homeobo 99.7 2E-17 6.9E-22 115.0 6.4 54 50-103 2-55 (56)
36 2hi3_A Homeodomain-only protei 99.7 3E-17 1E-21 120.0 7.5 59 46-104 3-62 (73)
37 3a02_A Homeobox protein arista 99.7 1.6E-17 5.4E-22 116.9 5.8 57 48-104 2-58 (60)
38 1wh5_A ZF-HD homeobox family p 99.7 9E-18 3.1E-22 125.3 4.5 59 44-102 16-78 (80)
39 2k40_A Homeobox expressed in E 99.7 2E-17 6.7E-22 118.9 6.1 59 46-104 2-60 (67)
40 1akh_A Protein (mating-type pr 99.7 1.8E-17 6.3E-22 116.7 5.6 57 45-101 5-61 (61)
41 2da4_A Hypothetical protein DK 99.7 1.4E-17 4.6E-22 123.8 4.5 61 44-104 7-71 (80)
42 2m0c_A Homeobox protein arista 99.7 3.5E-17 1.2E-21 119.7 6.6 62 43-104 7-68 (75)
43 3nar_A ZHX1, zinc fingers and 99.7 3.7E-17 1.3E-21 125.7 6.7 63 44-106 24-86 (96)
44 2ly9_A Zinc fingers and homeob 99.7 5E-17 1.7E-21 118.8 6.3 60 45-104 6-65 (74)
45 2ecb_A Zinc fingers and homeob 99.7 4.5E-17 1.5E-21 124.0 6.3 58 47-104 13-70 (89)
46 1wh7_A ZF-HD homeobox family p 99.7 1.6E-17 5.4E-22 124.1 3.4 58 44-102 16-78 (80)
47 1k61_A Mating-type protein alp 99.7 7.3E-17 2.5E-21 113.4 6.4 55 48-102 1-58 (60)
48 2cqx_A LAG1 longevity assuranc 99.7 2.1E-17 7.2E-22 121.0 3.7 59 45-103 8-67 (72)
49 1x2n_A Homeobox protein pknox1 99.7 6.1E-17 2.1E-21 118.2 6.2 62 43-104 5-69 (73)
50 2dn0_A Zinc fingers and homeob 99.7 5.3E-17 1.8E-21 119.5 5.5 60 45-104 8-67 (76)
51 1puf_B PRE-B-cell leukemia tra 99.7 6.1E-17 2.1E-21 118.2 5.5 61 46-106 2-65 (73)
52 1du6_A PBX1, homeobox protein 99.7 4.4E-17 1.5E-21 116.0 4.5 58 45-102 3-63 (64)
53 2dmp_A Zinc fingers and homeob 99.6 1.9E-16 6.4E-21 120.3 6.5 58 47-104 15-72 (89)
54 1b72_B Protein (PBX1); homeodo 99.6 1.9E-16 6.7E-21 119.1 6.5 59 46-104 2-63 (87)
55 2cuf_A FLJ21616 protein; homeo 99.6 2.6E-16 9E-21 120.6 7.0 61 44-104 6-81 (95)
56 1mnm_C Protein (MAT alpha-2 tr 99.6 3E-16 1E-20 118.4 7.0 60 43-102 25-87 (87)
57 2dmn_A Homeobox protein TGIF2L 99.6 3.4E-16 1.2E-20 117.3 6.6 61 44-104 6-69 (83)
58 1le8_B Mating-type protein alp 99.6 3.6E-16 1.2E-20 117.1 6.5 59 46-104 3-64 (83)
59 2l9r_A Homeobox protein NKX-3. 99.6 1.9E-16 6.4E-21 115.2 4.6 56 50-105 9-64 (69)
60 3nau_A Zinc fingers and homeob 99.6 4.6E-16 1.6E-20 111.9 6.3 53 52-104 11-63 (66)
61 1x2m_A LAG1 longevity assuranc 99.6 1.6E-16 5.6E-21 113.9 3.6 51 53-103 8-59 (64)
62 2e19_A Transcription factor 8; 99.6 4E-16 1.4E-20 111.7 5.6 54 49-102 7-60 (64)
63 1au7_A Protein PIT-1, GHF-1; c 99.6 3.7E-16 1.3E-20 128.8 5.4 60 44-103 86-145 (146)
64 3d1n_I POU domain, class 6, tr 99.6 7.4E-16 2.5E-20 127.4 6.5 59 44-102 92-150 (151)
65 1e3o_C Octamer-binding transcr 99.6 6.5E-16 2.2E-20 129.1 5.8 60 44-103 100-159 (160)
66 2xsd_C POU domain, class 3, tr 99.6 9.7E-16 3.3E-20 128.7 5.7 62 43-104 97-158 (164)
67 2da6_A Hepatocyte nuclear fact 99.6 2.9E-15 1E-19 116.5 7.7 62 43-104 4-86 (102)
68 1wi3_A DNA-binding protein SAT 99.6 1.6E-15 5.6E-20 109.5 5.6 58 44-101 6-64 (71)
69 3l1p_A POU domain, class 5, tr 99.6 2E-15 7E-20 125.5 5.7 60 44-103 95-154 (155)
70 3k2a_A Homeobox protein MEIS2; 99.6 3E-15 1E-19 107.9 5.0 59 50-108 3-64 (67)
71 2d5v_A Hepatocyte nuclear fact 99.5 3.6E-15 1.2E-19 124.6 5.5 61 44-104 96-156 (164)
72 1lfb_A Liver transcription fac 99.5 3.3E-15 1.1E-19 115.8 4.0 60 45-104 9-89 (99)
73 2da7_A Zinc finger homeobox pr 99.4 3.7E-13 1.3E-17 97.6 5.4 46 54-99 14-59 (71)
74 2lk2_A Homeobox protein TGIF1; 99.3 1.3E-12 4.6E-17 99.2 6.6 55 51-105 11-68 (89)
75 1ic8_A Hepatocyte nuclear fact 99.3 7.9E-13 2.7E-17 113.8 3.1 58 45-102 115-193 (194)
76 1mh3_A Maltose binding-A1 home 99.2 6.2E-12 2.1E-16 116.2 4.3 53 49-101 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.2 2.4E-11 8.2E-16 106.2 5.3 55 46-100 143-218 (221)
78 2nzz_A Penetratin conjugated G 98.9 1.7E-10 5.9E-15 73.7 -0.8 26 87-112 1-26 (37)
79 2ys9_A Homeobox and leucine zi 93.3 0.07 2.4E-06 38.3 3.5 44 52-95 13-56 (70)
80 2yy0_A C-MYC-binding protein; 88.8 0.82 2.8E-05 30.8 5.1 33 113-145 18-50 (53)
81 2wt7_B Transcription factor MA 86.3 4.2 0.00014 30.3 8.2 63 83-145 17-86 (90)
82 1hjb_A Ccaat/enhancer binding 84.9 3.4 0.00012 30.6 7.1 35 112-146 41-75 (87)
83 2wt7_A Proto-oncogene protein 83.8 4.9 0.00017 27.6 7.1 38 108-145 24-61 (63)
84 1ci6_A Transcription factor AT 83.2 5.5 0.00019 27.4 7.2 37 108-144 24-60 (63)
85 1t2k_D Cyclic-AMP-dependent tr 82.4 8.1 0.00028 26.2 7.7 37 108-144 23-59 (61)
86 1gu4_A CAAT/enhancer binding p 82.1 3.2 0.00011 30.1 5.8 45 97-144 29-73 (78)
87 1gd2_E Transcription factor PA 81.8 5.3 0.00018 28.3 6.8 37 108-144 30-66 (70)
88 1jnm_A Proto-oncogene C-JUN; B 79.2 3.2 0.00011 28.4 4.8 35 110-144 25-59 (62)
89 2dgc_A Protein (GCN4); basic d 79.0 3.9 0.00013 28.3 5.2 31 115-145 31-61 (63)
90 2glo_A Brinker CG9653-PA; prot 77.5 2.5 8.7E-05 28.0 3.8 45 49-94 3-47 (59)
91 1hlv_A CENP-B, major centromer 75.4 5.9 0.0002 29.9 5.9 50 47-99 3-52 (131)
92 1gd2_E Transcription factor PA 72.9 6.4 0.00022 27.9 5.0 41 101-141 30-70 (70)
93 2jn6_A Protein CGL2762, transp 71.9 1.9 6.4E-05 31.3 2.1 43 49-95 3-46 (97)
94 2elh_A CG11849-PA, LD40883P; s 63.3 16 0.00055 25.9 5.7 43 47-94 18-60 (87)
95 1dh3_A Transcription factor CR 62.3 29 0.00098 23.1 6.3 32 114-145 22-53 (55)
96 2wuj_A Septum site-determining 62.2 7.4 0.00025 26.2 3.4 31 114-144 27-57 (57)
97 1go4_E MAD1 (mitotic arrest de 61.5 14 0.00048 28.0 5.1 32 114-145 12-43 (100)
98 1tc3_C Protein (TC3 transposas 60.7 11 0.00038 22.5 3.9 41 50-95 4-44 (51)
99 1a93_B MAX protein, coiled coi 55.4 12 0.00039 23.0 3.0 25 116-140 9-33 (34)
100 2yy0_A C-MYC-binding protein; 53.8 23 0.00079 23.5 4.7 25 121-145 19-43 (53)
101 2jee_A YIIU; FTSZ, septum, coi 53.5 54 0.0019 23.8 7.0 19 126-144 53-71 (81)
102 3s4r_A Vimentin; alpha-helix, 53.3 56 0.0019 24.0 7.2 38 107-144 56-93 (93)
103 1jko_C HIN recombinase, DNA-in 53.1 5.6 0.00019 24.4 1.4 41 51-96 5-45 (52)
104 1s7o_A Hypothetical UPF0122 pr 51.8 72 0.0025 23.8 8.1 47 51-102 22-68 (113)
105 3hug_A RNA polymerase sigma fa 50.9 26 0.00089 24.8 5.0 45 52-101 38-82 (92)
106 3hnw_A Uncharacterized protein 50.8 74 0.0025 25.1 8.1 43 104-146 86-128 (138)
107 2jee_A YIIU; FTSZ, septum, coi 48.3 75 0.0026 23.0 7.2 36 110-145 30-65 (81)
108 1gu4_A CAAT/enhancer binding p 48.1 73 0.0025 22.8 7.7 38 108-145 30-67 (78)
109 1xsv_A Hypothetical UPF0122 pr 47.2 65 0.0022 24.0 7.0 47 51-102 25-71 (113)
110 1ci6_A Transcription factor AT 46.8 58 0.002 22.1 6.0 32 113-144 22-53 (63)
111 1iuf_A Centromere ABP1 protein 46.4 29 0.00098 27.0 5.0 52 46-97 6-61 (144)
112 2o8x_A Probable RNA polymerase 46.0 23 0.00079 23.2 3.8 46 51-101 15-60 (70)
113 1t2k_D Cyclic-AMP-dependent tr 45.7 65 0.0022 21.5 6.8 32 113-144 21-52 (61)
114 3m9b_A Proteasome-associated A 45.0 39 0.0013 29.6 6.0 39 104-142 58-96 (251)
115 3m91_A Proteasome-associated A 43.5 68 0.0023 21.1 6.2 28 117-144 19-46 (51)
116 1p4w_A RCSB; solution structur 43.1 37 0.0013 24.9 4.9 46 49-100 32-77 (99)
117 2rn7_A IS629 ORFA; helix, all 41.6 38 0.0013 24.5 4.7 46 49-94 4-52 (108)
118 1dh3_A Transcription factor CR 40.6 39 0.0013 22.5 4.2 29 108-136 23-51 (55)
119 3gpv_A Transcriptional regulat 40.1 1.2E+02 0.004 23.7 7.8 37 48-97 51-87 (148)
120 3ra3_A P1C; coiled coil domain 39.7 27 0.00093 19.8 2.7 21 124-144 3-23 (28)
121 3c57_A Two component transcrip 39.3 33 0.0011 24.6 4.0 46 51-102 27-72 (95)
122 1hjb_A Ccaat/enhancer binding 38.7 75 0.0026 23.2 5.9 33 113-145 35-67 (87)
123 2oxj_A Hybrid alpha/beta pepti 37.5 68 0.0023 19.4 4.5 27 119-145 6-32 (34)
124 1nlw_A MAD protein, MAX dimeri 37.1 60 0.0021 23.1 5.0 30 116-145 49-78 (80)
125 3v86_A De novo design helix; c 36.5 43 0.0015 18.8 3.2 22 119-140 5-26 (27)
126 1fse_A GERE; helix-turn-helix 35.0 43 0.0015 22.0 3.8 46 50-101 10-55 (74)
127 1nkp_B MAX protein, MYC proto- 34.6 69 0.0024 22.6 5.0 30 116-145 49-78 (83)
128 3mzy_A RNA polymerase sigma-H 34.3 43 0.0015 25.1 4.2 45 51-101 109-153 (164)
129 2p7v_B Sigma-70, RNA polymeras 34.2 40 0.0014 22.2 3.6 48 51-101 5-54 (68)
130 1ku3_A Sigma factor SIGA; heli 34.2 51 0.0017 22.1 4.1 48 51-101 10-59 (73)
131 3i5g_B Myosin regulatory light 32.9 73 0.0025 24.4 5.4 41 47-87 5-50 (153)
132 3oja_A Leucine-rich immune mol 32.1 1.3E+02 0.0046 27.5 8.0 44 105-148 426-469 (487)
133 1deb_A APC protein, adenomatou 32.0 85 0.0029 20.8 4.6 27 116-142 5-31 (54)
134 3lph_A Protein REV; helix-loop 31.9 42 0.0014 23.8 3.3 34 57-104 18-51 (72)
135 2wt7_A Proto-oncogene protein 31.8 1.2E+02 0.004 20.4 7.1 33 113-145 22-54 (63)
136 3hnw_A Uncharacterized protein 31.6 1.9E+02 0.0063 22.7 7.6 39 107-145 82-120 (138)
137 3a2a_A Voltage-gated hydrogen 31.6 1.2E+02 0.004 20.5 5.3 40 108-147 12-51 (58)
138 4dzn_A Coiled-coil peptide CC- 31.3 81 0.0028 18.4 4.5 26 117-142 5-30 (33)
139 3m48_A General control protein 31.0 83 0.0028 19.0 4.0 27 119-145 5-31 (33)
140 1nkp_A C-MYC, MYC proto-oncoge 30.5 77 0.0026 22.9 4.8 22 119-140 64-85 (88)
141 1je8_A Nitrate/nitrite respons 30.4 67 0.0023 22.2 4.4 46 51-102 21-66 (82)
142 1go4_E MAD1 (mitotic arrest de 30.2 85 0.0029 23.6 5.0 32 108-139 13-44 (100)
143 1p9i_A Cortexillin I/GCN4 hybr 30.2 77 0.0026 18.3 3.6 21 124-144 9-29 (31)
144 2lv7_A Calcium-binding protein 29.6 1.2E+02 0.0039 21.7 5.7 47 48-94 26-79 (100)
145 1x3u_A Transcriptional regulat 28.9 40 0.0014 22.6 2.9 45 52-102 17-61 (79)
146 1tty_A Sigma-A, RNA polymerase 28.8 57 0.002 22.8 3.8 47 52-101 19-67 (87)
147 3w03_C DNA repair protein XRCC 28.6 71 0.0024 26.6 4.7 33 112-144 143-175 (184)
148 1kd8_B GABH BLL, GCN4 acid bas 27.7 1.1E+02 0.0037 18.8 4.7 28 119-146 6-33 (36)
149 2v71_A Nuclear distribution pr 27.1 2.5E+02 0.0086 23.3 7.9 42 104-145 67-112 (189)
150 1wt6_A Myotonin-protein kinase 27.1 1.8E+02 0.0061 21.0 6.9 29 118-146 42-70 (81)
151 1or7_A Sigma-24, RNA polymeras 26.7 72 0.0025 24.8 4.4 45 52-101 141-185 (194)
152 3he5_A Synzip1; heterodimeric 26.5 1.3E+02 0.0043 19.1 6.4 37 108-144 11-47 (49)
153 1t6f_A Geminin; coiled-coil, c 26.3 1.2E+02 0.004 18.7 4.2 15 126-140 19-33 (37)
154 3twe_A Alpha4H; unknown functi 26.1 93 0.0032 17.4 3.8 22 124-145 4-25 (27)
155 3s9g_A Protein hexim1; cyclin 25.9 1.4E+02 0.0047 22.5 5.4 18 119-136 70-87 (104)
156 3oja_B Anopheles plasmodium-re 25.7 1.2E+02 0.004 28.6 6.4 16 127-142 564-579 (597)
157 1jnm_A Proto-oncogene C-JUN; B 25.5 1.5E+02 0.0052 19.7 7.6 33 113-145 21-53 (62)
158 1nlw_A MAD protein, MAX dimeri 24.4 1.3E+02 0.0046 21.2 5.0 33 108-140 48-80 (80)
159 1u78_A TC3 transposase, transp 24.3 93 0.0032 22.9 4.5 42 50-96 5-46 (141)
160 3vmx_A Voltage-gated hydrogen 24.3 1.5E+02 0.0052 19.3 6.4 38 109-146 6-43 (48)
161 1rp3_A RNA polymerase sigma fa 24.2 74 0.0025 25.5 4.1 45 52-101 188-232 (239)
162 2xi8_A Putative transcription 23.9 28 0.00097 22.1 1.2 23 75-97 17-39 (66)
163 3gp4_A Transcriptional regulat 23.8 2.5E+02 0.0086 21.6 10.4 36 48-96 37-72 (142)
164 2kvr_A Ubiquitin carboxyl-term 23.5 22 0.00075 27.8 0.6 23 75-97 72-94 (130)
165 3mq7_A Bone marrow stromal ant 23.3 2E+02 0.0068 22.2 6.0 15 84-98 41-55 (121)
166 3bd1_A CRO protein; transcript 23.2 34 0.0011 23.2 1.5 23 75-97 14-36 (79)
167 3c3g_A Alpha/beta peptide with 23.1 1.3E+02 0.0045 18.1 4.7 27 119-145 5-31 (33)
168 2r1j_L Repressor protein C2; p 23.0 31 0.0011 22.0 1.3 24 75-98 21-44 (68)
169 3c3f_A Alpha/beta peptide with 22.7 1.4E+02 0.0046 18.1 4.5 27 119-145 6-32 (34)
170 3oja_B Anopheles plasmodium-re 22.6 2.5E+02 0.0085 26.2 8.0 25 113-137 529-553 (597)
171 1f3k_A Omega-conotoxin txvii; 22.4 44 0.0015 18.9 1.6 12 232-243 3-14 (26)
172 2jpc_A SSRB; DNA binding prote 22.3 51 0.0018 20.9 2.3 27 76-102 17-43 (61)
173 1nkp_B MAX protein, MYC proto- 22.3 1E+02 0.0035 21.6 4.1 32 109-140 49-80 (83)
174 2a6c_A Helix-turn-helix motif; 22.2 57 0.0019 22.3 2.6 23 75-97 34-56 (83)
175 1r8e_A Multidrug-efflux transp 21.1 2.6E+02 0.009 23.2 7.2 35 49-96 42-76 (278)
176 3bs3_A Putative DNA-binding pr 21.0 36 0.0012 22.4 1.3 24 75-98 26-49 (76)
177 1zug_A Phage 434 CRO protein; 20.9 35 0.0012 22.1 1.2 24 75-98 19-42 (71)
178 1nkp_A C-MYC, MYC proto-oncoge 20.5 1.8E+02 0.006 20.9 5.1 32 115-146 53-84 (88)
No 1
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=6.6e-20 Score=141.27 Aligned_cols=87 Identities=29% Similarity=0.489 Sum_probs=63.3
Q ss_pred CCCcCCCCcccccccccccccCcchhhhhcccchhhhhhhhccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHH
Q 025268 2 GSETFDHFHEDKTSTKRKQIYGREFQAMMDCLEEEDCREEASQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEE 81 (255)
Q Consensus 2 g~q~~~w~~e~~~~~~~~~~~~~e~~~m~~~~~~~~~~~~~~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~ 81 (255)
+.+||+||++.+..++.. ... ....+..+++|++||..|+.+||..|..++||+..++..||..
T Consensus 7 ~~~~~~W~~~~r~~~~~~--~~~--------------~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~ 70 (97)
T 1b72_A 7 TARTFDWMKVKRNPPKTA--KVS--------------EPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAAT 70 (97)
T ss_dssp -CCCCGGGGC------------------------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CcccccccccccCCCCCC--CCC--------------CCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 468999999988433321 000 0112345667788999999999999999999999999999999
Q ss_pred hCCCcchhhhhhhhhHHHhhHHH
Q 025268 82 LGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 82 LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
|||+++||+|||||||+|+|+..
T Consensus 71 l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 71 LELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHhHHHHHHHhHHHhHHh
Confidence 99999999999999999999865
No 2
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.79 E-value=1.1e-19 Score=137.56 Aligned_cols=81 Identities=27% Similarity=0.475 Sum_probs=62.7
Q ss_pred CCcCCCCcccccccccccccCcchhhhhcccchhhhhhhhccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHh
Q 025268 3 SETFDHFHEDKTSTKRKQIYGREFQAMMDCLEEEDCREEASQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEEL 82 (255)
Q Consensus 3 ~q~~~w~~e~~~~~~~~~~~~~e~~~m~~~~~~~~~~~~~~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~L 82 (255)
.++||||+...... + .....+..+++|++||..|+.+||..|..++||+..++..||..|
T Consensus 6 ~~~~pwm~~~~~~~------~--------------~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l 65 (88)
T 2r5y_A 6 PQIYPWMKRVHLGT------S--------------TVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL 65 (88)
T ss_dssp SSCCGGGSCC-----------------------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred CCCCchhhccCCCC------C--------------CCCCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 47899999877211 0 011223456777889999999999999999999999999999999
Q ss_pred CCCcchhhhhhhhhHHHhhHH
Q 025268 83 GLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 83 gL~~rqVqvWFQNRRak~Kkk 103 (255)
||++++|+|||||||+|+|+.
T Consensus 66 ~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 66 SLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp TCCHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHhhHHhHHHHHHhHhh
Confidence 999999999999999999975
No 3
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=1.3e-18 Score=123.27 Aligned_cols=60 Identities=25% Similarity=0.396 Sum_probs=52.7
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
..+++|+.||..|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 345667789999999999999999999999999999999999999999999999999985
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.74 E-value=2.6e-18 Score=122.19 Aligned_cols=59 Identities=36% Similarity=0.571 Sum_probs=55.0
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
.+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 56677889999999999999999999999999999999999999999999999999985
No 5
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.74 E-value=1.8e-18 Score=129.09 Aligned_cols=61 Identities=36% Similarity=0.583 Sum_probs=54.0
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..+++|++||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3566777899999999999999999999999999999999999999999999999999854
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=124.08 Aligned_cols=62 Identities=27% Similarity=0.494 Sum_probs=57.5
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34566777899999999999999999999999999999999999999999999999999854
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.3e-18 Score=124.89 Aligned_cols=62 Identities=29% Similarity=0.563 Sum_probs=57.3
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34566777899999999999999999999999999999999999999999999999999854
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4e-18 Score=126.76 Aligned_cols=63 Identities=33% Similarity=0.551 Sum_probs=58.2
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKEL 105 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~ 105 (255)
+..+++|++|+..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 345667778999999999999999999999999999999999999999999999999998653
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.73 E-value=3.2e-18 Score=126.42 Aligned_cols=64 Identities=28% Similarity=0.485 Sum_probs=58.1
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELER 107 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~~~ 107 (255)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+....+
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 3455566799999999999999999999999999999999999999999999999999876544
No 10
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.6e-18 Score=123.31 Aligned_cols=62 Identities=39% Similarity=0.617 Sum_probs=57.4
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34566777899999999999999999999999999999999999999999999999999854
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=127.09 Aligned_cols=61 Identities=34% Similarity=0.554 Sum_probs=56.2
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 4455666799999999999999999999999999999999999999999999999999753
No 12
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=6.5e-18 Score=117.92 Aligned_cols=57 Identities=32% Similarity=0.565 Sum_probs=54.2
Q ss_pred CCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 46 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356778999999999999999999999999999999999999999999999999986
No 13
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=125.36 Aligned_cols=62 Identities=24% Similarity=0.510 Sum_probs=57.7
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+..+++|++||..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 34566777899999999999999999999999999999999999999999999999999865
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.72 E-value=5.4e-18 Score=119.70 Aligned_cols=58 Identities=31% Similarity=0.654 Sum_probs=52.7
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
.+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3566778999999999999999999999999999999999999999999999999986
No 15
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-18 Score=123.18 Aligned_cols=62 Identities=29% Similarity=0.463 Sum_probs=57.3
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+..+++|++||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34566777899999999999999999999999999999999999999999999999999753
No 16
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=4.9e-18 Score=125.72 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 46 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..++.+||.+|+.+|+..|..++||+..++++||..+||+++||+|||||||+|+|+..
T Consensus 4 g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999864
No 17
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-18 Score=127.29 Aligned_cols=62 Identities=27% Similarity=0.479 Sum_probs=56.9
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
.+.+++|++||..|+.+|+..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34556667799999999999999999999999999999999999999999999999999854
No 18
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=5.7e-18 Score=125.87 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=57.5
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+..+++|++|+..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 34566777899999999999999999999999999999999999999999999999999865
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.72 E-value=1.2e-17 Score=123.31 Aligned_cols=62 Identities=35% Similarity=0.540 Sum_probs=57.3
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKEL 105 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~ 105 (255)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 35566777999999999999999999999999999999999999999999999999998653
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=9.9e-18 Score=120.97 Aligned_cols=60 Identities=30% Similarity=0.519 Sum_probs=56.6
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
++++|++||..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 456777899999999999999999999999999999999999999999999999999865
No 21
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.72 E-value=4.7e-18 Score=130.10 Aligned_cols=64 Identities=30% Similarity=0.489 Sum_probs=58.0
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELER 107 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~~~ 107 (255)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.....
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 4455666799999999999999999999999999999999999999999999999999876433
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-18 Score=122.71 Aligned_cols=62 Identities=24% Similarity=0.489 Sum_probs=57.2
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
...+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34566777899999999999999999999999999999999999999999999999999853
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-18 Score=123.35 Aligned_cols=62 Identities=29% Similarity=0.534 Sum_probs=57.1
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 34566677899999999999999999999999999999999999999999999999999753
No 24
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.4e-17 Score=121.43 Aligned_cols=59 Identities=34% Similarity=0.524 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHHhHh-cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 46 TEKKRRLTVDQVKALEKNFEV-DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~-~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
.++|++|+..|+.+||..|.. ++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456788999999999999996 99999999999999999999999999999999999864
No 25
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=1.6e-17 Score=123.76 Aligned_cols=61 Identities=31% Similarity=0.542 Sum_probs=56.6
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..+++|++|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 4555666799999999999999999999999999999999999999999999999999865
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.71 E-value=4.4e-18 Score=122.76 Aligned_cols=61 Identities=25% Similarity=0.481 Sum_probs=57.1
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..+++|++||..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4566777899999999999999999999999999999999999999999999999999865
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-17 Score=117.32 Aligned_cols=58 Identities=38% Similarity=0.575 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 46 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
+++|++||..|+..||..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567789999999999999999999999999999999999999999999999999874
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=1.1e-17 Score=120.76 Aligned_cols=59 Identities=36% Similarity=0.606 Sum_probs=55.9
Q ss_pred CCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 46 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 56677899999999999999999999999999999999999999999999999999864
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.70 E-value=1.6e-17 Score=121.59 Aligned_cols=61 Identities=28% Similarity=0.534 Sum_probs=56.7
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3566777899999999999999999999999999999999999999999999999999853
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=115.71 Aligned_cols=57 Identities=32% Similarity=0.497 Sum_probs=53.6
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
.+++|++|+..|+.+|+..|..++||+..++..||..|||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356677899999999999999999999999999999999999999999999999976
No 31
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=122.87 Aligned_cols=60 Identities=25% Similarity=0.447 Sum_probs=56.3
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
.++|+++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 456777899999999999999999999999999999999999999999999999999864
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=1.3e-17 Score=119.42 Aligned_cols=60 Identities=32% Similarity=0.524 Sum_probs=56.3
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
.+++|++||..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 456777899999999999999999999999999999999999999999999999999754
No 33
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=125.15 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=56.9
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
...+++|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34556667799999999999999999999999999999999999999999999999999854
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=1.8e-17 Score=119.60 Aligned_cols=59 Identities=29% Similarity=0.549 Sum_probs=55.7
Q ss_pred CCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 46 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+++|++||..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 55677899999999999999999999999999999999999999999999999999864
No 35
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=114.98 Aligned_cols=54 Identities=30% Similarity=0.532 Sum_probs=50.8
Q ss_pred CcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 50 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 50 ~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
+.||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 468999999999999999999999999999999999999999999999999974
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3e-17 Score=120.02 Aligned_cols=59 Identities=32% Similarity=0.477 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHHhHh-cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 46 TEKKRRLTVDQVKALEKNFEV-DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~-~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+++|++||..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 466778999999999999995 99999999999999999999999999999999999865
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.70 E-value=1.6e-17 Score=116.89 Aligned_cols=57 Identities=35% Similarity=0.528 Sum_probs=50.5
Q ss_pred CCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 48 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 48 kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
.|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467899999999999999999999999999999999999999999999999999854
No 38
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=9e-18 Score=125.32 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=54.7
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHh----cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEV----DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~----~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
..+++|+.||..|+..||..|.. ++||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45556667999999999999999 999999999999999999999999999999999875
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=118.89 Aligned_cols=59 Identities=36% Similarity=0.549 Sum_probs=56.1
Q ss_pred CCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 46 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+++|++||..|+.+||..|..++||+..++..||..+||++++|++||||||+|+|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 56778899999999999999999999999999999999999999999999999999865
No 40
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=1.8e-17 Score=116.73 Aligned_cols=57 Identities=30% Similarity=0.520 Sum_probs=48.5
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
.+++|++|+..|+.+|+..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 455667799999999999999999999999999999999999999999999999976
No 41
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=123.81 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=56.3
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhc----CCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVD----NKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~----~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..+++|+.||..|+.+||..|..+ +||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 455666679999999999999999 9999999999999999999999999999999999854
No 42
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-17 Score=119.66 Aligned_cols=62 Identities=29% Similarity=0.476 Sum_probs=56.9
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
++.++.|++|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34556677799999999999999999999999999999999999999999999999999854
No 43
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=125.66 Aligned_cols=63 Identities=30% Similarity=0.404 Sum_probs=56.6
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELE 106 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~~ 106 (255)
..+++|++||..|+.+|+..|..++||+..++..||..|||+++||++||||||+|+|+.++.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 455677789999999999999999999999999999999999999999999999999987643
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=118.84 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=56.5
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
.++.|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 456678899999999999999999999999999999999999999999999999999864
No 45
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=4.5e-17 Score=124.04 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=54.6
Q ss_pred CCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 47 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 47 ~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
++.++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 4455899999999999999999999999999999999999999999999999999865
No 46
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=1.6e-17 Score=124.11 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=53.4
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHh-----cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEV-----DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
..+++|+.||..|+..|| .|.. ++||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 445566679999999999 7999 999999999999999999999999999999999875
No 47
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=7.3e-17 Score=113.37 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=52.9
Q ss_pred CCCcCCHHHHHHHHHHhHh---cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 48 KKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 48 kr~r~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
++++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4678999999999999999 999999999999999999999999999999999986
No 48
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.1e-17 Score=120.99 Aligned_cols=59 Identities=27% Similarity=0.413 Sum_probs=55.0
Q ss_pred CCCCCCcCCHHHHHHHHHHh-HhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 45 ATEKKRRLTVDQVKALEKNF-EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F-~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
+.+++++++..|+.+||..| ..++||+..++.+||..|||+++||+|||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 45567789999999999999 999999999999999999999999999999999999974
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=6.1e-17 Score=118.19 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=56.6
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHh---cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+..+++|++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 345666777999999999999987 99999999999999999999999999999999999854
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-17 Score=119.53 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=56.0
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+...|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 445577899999999999999999999999999999999999999999999999999854
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.66 E-value=6.1e-17 Score=118.18 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=56.7
Q ss_pred CCCCCcCCHHHHHHHHHHh---HhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHHH
Q 025268 46 TEKKRRLTVDQVKALEKNF---EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELE 106 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~~ 106 (255)
+++|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5677889999999999999 899999999999999999999999999999999999986543
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=4.4e-17 Score=115.96 Aligned_cols=58 Identities=24% Similarity=0.419 Sum_probs=54.9
Q ss_pred CCCCCCcCCHHHHHHHHHHh---HhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 45 ATEKKRRLTVDQVKALEKNF---EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
++++|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46677889999999999999 89999999999999999999999999999999999986
No 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=120.29 Aligned_cols=58 Identities=33% Similarity=0.369 Sum_probs=54.3
Q ss_pred CCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 47 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 47 ~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
.+++++|..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4556699999999999999999999999999999999999999999999999998765
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.64 E-value=1.9e-16 Score=119.11 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHHh---HhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 46 TEKKRRLTVDQVKALEKNF---EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+++|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 5677889999999999999 8999999999999999999999999999999999999865
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.6e-16 Score=120.58 Aligned_cols=61 Identities=15% Similarity=0.342 Sum_probs=56.7
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhC---------------CCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELG---------------LQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~Lg---------------L~~rqVqvWFQNRRak~Kkk~ 104 (255)
+.++.|++|+..|+.+||..|..++||+..++..||..|| |++.+|++||||||+|+|++.
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 4556667799999999999999999999999999999999 999999999999999999865
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=3e-16 Score=118.37 Aligned_cols=60 Identities=28% Similarity=0.393 Sum_probs=55.3
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHh---cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
+.++++|++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345566778999999999999999 999999999999999999999999999999999873
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=117.32 Aligned_cols=61 Identities=26% Similarity=0.344 Sum_probs=55.5
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHh---cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..+++|++|+..|+.+|+.+|.. ++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 45556667999999999999987 59999999999999999999999999999999998754
No 58
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=3.6e-16 Score=117.11 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=54.1
Q ss_pred CCCCCcCCHHHHHHHHHHhHh---cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 46 TEKKRRLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
++++++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 345567999999999999999 99999999999999999999999999999999999864
No 59
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-16 Score=115.19 Aligned_cols=56 Identities=36% Similarity=0.605 Sum_probs=52.7
Q ss_pred CcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHH
Q 025268 50 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKEL 105 (255)
Q Consensus 50 ~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~ 105 (255)
..+|..|+..||..|..++||+..+|..||..|||+++||+|||||||+|+|++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 34899999999999999999999999999999999999999999999999998653
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=111.93 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 52 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 52 ~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
-|..|+.+||..|..++||+..++.+||..+||+.+||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 48899999999999999999999999999999999999999999999999754
No 61
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=1.6e-16 Score=113.89 Aligned_cols=51 Identities=29% Similarity=0.472 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHh-HhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 53 TVDQVKALEKNF-EVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 53 t~~Ql~~Le~~F-~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
.+.|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 356899999999 568899999999999999999999999999999999863
No 62
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=111.70 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=50.5
Q ss_pred CCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 49 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 49 r~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
+...+..|+..||..|..++||+..+|..||..|||++++|+|||||||||.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345679999999999999999999999999999999999999999999998875
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=3.7e-16 Score=128.80 Aligned_cols=60 Identities=30% Similarity=0.551 Sum_probs=54.3
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
+.+++|++|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 445566679999999999999999999999999999999999999999999999999974
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.60 E-value=7.4e-16 Score=127.42 Aligned_cols=59 Identities=27% Similarity=0.488 Sum_probs=54.9
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
+.+++|++|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 44555667999999999999999999999999999999999999999999999999986
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.60 E-value=6.5e-16 Score=129.07 Aligned_cols=60 Identities=30% Similarity=0.478 Sum_probs=53.8
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
+.+++|++|+..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 456667779999999999999999999999999999999999999999999999999974
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.58 E-value=9.7e-16 Score=128.69 Aligned_cols=62 Identities=29% Similarity=0.399 Sum_probs=51.8
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
.+.+++|++|+..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+..
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 34555666799999999999999999999999999999999999999999999999999865
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=116.54 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=56.8
Q ss_pred ccCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHh---------------------CCCcchhhhhhhhhHHHhh
Q 025268 43 SQATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEEL---------------------GLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 43 ~~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~L---------------------gL~~rqVqvWFQNRRak~K 101 (255)
++.++.|+.|++.|+.+||..|..++||+..+|++||..| +|++.+|++||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3456667779999999999999999999999999999999 7999999999999999999
Q ss_pred HHH
Q 025268 102 SKE 104 (255)
Q Consensus 102 kk~ 104 (255)
+++
T Consensus 84 r~~ 86 (102)
T 2da6_A 84 FRQ 86 (102)
T ss_dssp HHH
T ss_pred Hhh
Confidence 865
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.6e-15 Score=109.47 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=53.0
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHh-cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 44 QATEKKRRLTVDQVKALEKNFEV-DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~-~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
.++|.|+.|+.+|+.+|+..|.. ++||+.+.|..||.++||++++|+|||||||--.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 45666777999999999999999 99999999999999999999999999999997443
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.56 E-value=2e-15 Score=125.48 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=55.5
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk 103 (255)
+.+++|++|+..|+..||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 456667779999999999999999999999999999999999999999999999999973
No 70
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=3e-15 Score=107.88 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=50.7
Q ss_pred CcCCHHHHHHHHHHhH---hcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHHHHH
Q 025268 50 RRLTVDQVKALEKNFE---VDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERD 108 (255)
Q Consensus 50 ~r~t~~Ql~~Le~~F~---~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~~~~ 108 (255)
.+|+.+|+.+|+..|. .++||+..++..||..+||+.+||++||||||+|+|+..+...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 3699999999999999 9999999999999999999999999999999999998765543
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.54 E-value=3.6e-15 Score=124.63 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=54.0
Q ss_pred cCCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 44 QATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 44 ~~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
..+++|++|+..|+.+|+..|..++||+...+..||..|||+++||++||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4566677799999999999999999999999999999999999999999999999999754
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.53 E-value=3.3e-15 Score=115.78 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=53.3
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHH------------------hC---CCcchhhhhhhhhHHHhhHH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEE------------------LG---LQPRQIAVWFQNRRARLKSK 103 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~------------------Lg---L~~rqVqvWFQNRRak~Kkk 103 (255)
.+++|+.|+..|+.+||..|..++||+...|++||.. || |++.+|++||||||+++|++
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHh
Confidence 4455667999999999999999999999999999999 88 99999999999999999876
Q ss_pred H
Q 025268 104 E 104 (255)
Q Consensus 104 ~ 104 (255)
+
T Consensus 89 ~ 89 (99)
T 1lfb_A 89 H 89 (99)
T ss_dssp C
T ss_pred c
Confidence 5
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=97.58 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHH
Q 025268 54 VDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRAR 99 (255)
Q Consensus 54 ~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak 99 (255)
.+|+.+|++.|..+++|+.+++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999984
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=99.19 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHHhHh---cCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHHH
Q 025268 51 RLTVDQVKALEKNFEV---DNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKEL 105 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~~ 105 (255)
-|+..++.+|+.+|.. ++||+..++..||..+||++.||++||+|||+|+++..+
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 4889999999999987 999999999999999999999999999999999987653
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.29 E-value=7.9e-13 Score=113.82 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=52.0
Q ss_pred CCCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhC---------------------CCcchhhhhhhhhHHHhhH
Q 025268 45 ATEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELG---------------------LQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 45 ~~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~Lg---------------------L~~rqVqvWFQNRRak~Kk 102 (255)
.+++|+.|+..|+.+|+..|..++||+...|++||..|+ |++.+|++||||||+++|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 345555699999999999999999999999999999999 9999999999999999874
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.20 E-value=6.2e-12 Score=116.17 Aligned_cols=53 Identities=30% Similarity=0.525 Sum_probs=50.5
Q ss_pred CCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 49 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 49 r~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
+..++..|+..|+..|..++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45599999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=106.21 Aligned_cols=55 Identities=16% Similarity=0.313 Sum_probs=49.6
Q ss_pred CCCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhC---------------------CCcchhhhhhhhhHHHh
Q 025268 46 TEKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELG---------------------LQPRQIAVWFQNRRARL 100 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~Lg---------------------L~~rqVqvWFQNRRak~ 100 (255)
++.|..|++.|+.+|+..|..++||+..+|++||..+| |++.+|++||+|||++.
T Consensus 143 RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 143 RRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 33444599999999999999999999999999999988 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.86 E-value=1.7e-10 Score=73.71 Aligned_cols=26 Identities=38% Similarity=0.805 Sum_probs=21.8
Q ss_pred chhhhhhhhhHHHhhHHHHHHHHhHH
Q 025268 87 RQIAVWFQNRRARLKSKELERDYGLL 112 (255)
Q Consensus 87 rqVqvWFQNRRak~Kkk~~~~~~~~l 112 (255)
+||+|||||||||||+.+.++.+..+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~ 26 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDII 26 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHH
Confidence 69999999999999999877655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.28 E-value=0.07 Score=38.26 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 025268 52 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 95 (255)
Q Consensus 52 ~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQN 95 (255)
.++.-...|+..|...+.+.......|+.+..|+..||+-||-.
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34445688999999999999999999999999999999999954
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.84 E-value=0.82 Score=30.83 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=28.7
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 113 KANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 113 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
...+++|+.++..|+..++.|.+++.+|+++|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999998885
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.32 E-value=4.2 Score=30.31 Aligned_cols=63 Identities=21% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCCcchhhhhhhhhHHH-------hhHHHHHHHHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 83 GLQPRQIAVWFQNRRAR-------LKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 83 gL~~rqVqvWFQNRRak-------~Kkk~~~~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
||+..+|..|=|-||.- .-+.........|......|..+.+.|..|+..+..|+..++.++.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666531 1122223455677777788888888888888888888888888764
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=84.89 E-value=3.4 Score=30.56 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 025268 112 LKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 146 (255)
Q Consensus 112 lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 146 (255)
+......|..+|..|+.+.+.|..|+..|+.-+..
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777776653
No 83
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=83.82 E-value=4.9 Score=27.62 Aligned_cols=38 Identities=29% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
....|....+.|..++..|..+...|..++..|+.-|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777777777777777766666553
No 84
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.22 E-value=5.5 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=24.3
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
....+......|..++..|..+...|..|+..|+.-|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777777776544
No 85
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.36 E-value=8.1 Score=26.18 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
....|....+.+..++..|..+...|+.|+..|+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666777777777777777777777776654
No 86
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=82.11 E-value=3.2 Score=30.07 Aligned_cols=45 Identities=24% Similarity=0.246 Sum_probs=23.5
Q ss_pred HHHhhHHHHHHHHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 97 RARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 97 Rak~Kkk~~~~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
|.+.|++.... .+......|..+|..|+.+.+.|..|+..|+.-|
T Consensus 29 rSR~krk~r~~---e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 29 KSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444222 2334445556666666666666666666665443
No 87
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=81.79 E-value=5.3 Score=28.32 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
....|......+...+..+..+|+.|+.++..|...+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555556666666666666665554
No 88
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.24 E-value=3.2 Score=28.40 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=17.5
Q ss_pred hHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 110 GLLKANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 110 ~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
..|....+.|..++..|..+...|..|+..|+..|
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554443
No 89
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=78.99 E-value=3.9 Score=28.28 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=20.9
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 115 NYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 115 ~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
....|......|..+|..|..++..|+..++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666777888888888888877654
No 90
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=77.51 E-value=2.5 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=30.8
Q ss_pred CCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 025268 49 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQ 94 (255)
Q Consensus 49 r~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQ 94 (255)
+++|+.+....+...+.. .........++|.++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456888877666444433 222112256899999999999999975
No 91
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=75.42 E-value=5.9 Score=29.89 Aligned_cols=50 Identities=22% Similarity=0.404 Sum_probs=38.1
Q ss_pred CCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHH
Q 025268 47 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRAR 99 (255)
Q Consensus 47 ~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak 99 (255)
++|+++|.++...+-..+.....+.. .+||..+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 35677999998777777755555443 368999999999999999876653
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.85 E-value=6.4 Score=27.91 Aligned_cols=41 Identities=34% Similarity=0.349 Sum_probs=31.2
Q ss_pred hHHHHHHHHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 025268 101 KSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELK 141 (255)
Q Consensus 101 Kkk~~~~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~ 141 (255)
.-+.++.....|...+..+..++..|+.++..|..|+..|+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33455666777777888888888999999999988887764
No 93
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=71.95 E-value=1.9 Score=31.32 Aligned_cols=43 Identities=12% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCcCCHHHHHHHHHHhHhc-CCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 025268 49 KRRLTVDQVKALEKNFEVD-NKLEPDRKVKLAEELGLQPRQIAVWFQN 95 (255)
Q Consensus 49 r~r~t~~Ql~~Le~~F~~~-~~ps~~~r~~LA~~LgL~~rqVqvWFQN 95 (255)
|++++.++....-..+... .. ....+|..+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888765555445322 21 3568899999999999999854
No 94
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.28 E-value=16 Score=25.88 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 025268 47 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQ 94 (255)
Q Consensus 47 ~kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQ 94 (255)
+++++++.++....-..+.. .. ...+||..+|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34557999886555555542 22 245789999999999999974
No 95
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=62.28 E-value=29 Score=23.12 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=22.6
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 114 ANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 114 ~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
...+.|......|..+|..|..++..|+..++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666677788888888888887776543
No 96
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=62.24 E-value=7.4 Score=26.23 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 114 ANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 114 ~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
...+.+..+++.+..+|..|+.++..|+++|
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455667777778888888888887777654
No 97
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.52 E-value=14 Score=27.99 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=26.4
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 114 ANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 114 ~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
..+..++...+.|..|++.|+.++..|+.+|-
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888999988888888884
No 98
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=60.66 E-value=11 Score=22.51 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=28.6
Q ss_pred CcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 025268 50 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQN 95 (255)
Q Consensus 50 ~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQN 95 (255)
..++..+...+...+... .+ ..+||..+|++..-|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g--~s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHhh
Confidence 357777765555555332 23 457899999999999999854
No 99
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=55.36 E-value=12 Score=22.97 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=17.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 025268 116 YDALRLDYNNLQQENEALTAELREL 140 (255)
Q Consensus 116 ~~~l~~~~~~l~~en~~l~~e~~~l 140 (255)
+.+...+.+.|+++|..|..++..|
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3455667777777777777777654
No 100
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.78 E-value=23 Score=23.53 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 121 LDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 121 ~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
.+++.|+.||+.|+.++..|++.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665555554
No 101
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.50 E-value=54 Score=23.78 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025268 126 LQQENEALTAELRELKAKL 144 (255)
Q Consensus 126 l~~en~~l~~e~~~l~~~l 144 (255)
|..+|+.|+.|...-++++
T Consensus 53 L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 102
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=53.26 E-value=56 Score=24.01 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=27.7
Q ss_pred HHHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 107 RDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 107 ~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
.....|+...+.+..++..+..+.+.|..++.+++.+|
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556667777777777777777777888888877764
No 103
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=53.06 E-value=5.6 Score=24.42 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=28.1
Q ss_pred cCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhh
Q 025268 51 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNR 96 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNR 96 (255)
.++.++...+...+... . ...+||..+|++..-|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 45666655555555432 2 34578999999999999998643
No 104
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=51.80 E-value=72 Score=23.82 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 51 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
.+++.+..++...|.... ...++|..+|++...|+.|...-|.+.+.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888887764332 24578999999999999998766655544
No 105
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=50.90 E-value=26 Score=24.78 Aligned_cols=45 Identities=11% Similarity=0.283 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 52 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 52 ~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
++..+..+|...|-... ...+||..||++...|+.+...-|.+.|
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 78888888877653222 3457899999999999988765554444
No 106
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.75 E-value=74 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 025268 104 ELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 146 (255)
Q Consensus 104 ~~~~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 146 (255)
...+....||.....++...+.+.++++.|+.++..|+.++..
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666666666666665543
No 107
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.34 E-value=75 Score=23.01 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=17.6
Q ss_pred hHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 110 GLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 110 ~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
+.||..+..+..+++.++...+.|..++..|+....
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333333333333333333333446667777776654
No 108
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.12 E-value=73 Score=22.78 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=27.6
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
-...-+.....+......|..+|..|+.++..|+..+.
T Consensus 30 SR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666677777788888888888888887764
No 109
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=47.18 E-value=65 Score=23.96 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 51 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
.+++.+..+|...|-..- .-.++|..+|++...|+.+...-|.+-+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378888888877753322 34578999999999999988766655554
No 110
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.85 E-value=58 Score=22.08 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=17.1
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 113 KANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 113 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
+.....+......|..+|..|..++..|+..+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555443
No 111
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=46.37 E-value=29 Score=27.02 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=38.0
Q ss_pred CCCCCcCCHHHHHHHHHHh-HhcCCCCHHHHHH-HHHHh--CCCcchhhhhhhhhH
Q 025268 46 TEKKRRLTVDQVKALEKNF-EVDNKLEPDRKVK-LAEEL--GLQPRQIAVWFQNRR 97 (255)
Q Consensus 46 ~~kr~r~t~~Ql~~Le~~F-~~~~~ps~~~r~~-LA~~L--gL~~rqVqvWFQNRR 97 (255)
+++|.++|.+|...|-..+ ..++..+..+... ...++ +++...|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 5677889999999999999 6677776654333 12277 778888998987643
No 112
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.96 E-value=23 Score=23.16 Aligned_cols=46 Identities=26% Similarity=0.144 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 51 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
.+++.+..+|...|-.. . ...++|..+|++...|+.+...-+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g--~---s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--L---SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--C---CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 37888888888776332 2 2457899999999999988765444443
No 113
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.69 E-value=65 Score=21.50 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 113 KANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 113 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
+.....|....+.|..+|..|..++..|+..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666665554
No 114
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=44.95 E-value=39 Score=29.56 Aligned_cols=39 Identities=26% Similarity=0.217 Sum_probs=26.1
Q ss_pred HHHHHHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 025268 104 ELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA 142 (255)
Q Consensus 104 ~~~~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~ 142 (255)
.+.+....|.+.++.|......++++...|+.|++.|++
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555666666777777777777777777777766654
No 115
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.48 E-value=68 Score=21.14 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 117 DALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 117 ~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
..|...|..|..-....+.++..|++.+
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 116
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=43.05 E-value=37 Score=24.89 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=34.2
Q ss_pred CCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHh
Q 025268 49 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARL 100 (255)
Q Consensus 49 r~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~ 100 (255)
...+++.+..+|...+.- .+ ..+||..||++..-|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G---~s---~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG---FL---VTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT---CC---HHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC---CC---HHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 456999999999775532 22 36889999999999998876554443
No 117
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=41.59 E-value=38 Score=24.49 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=30.6
Q ss_pred CCcCCHHHHHHHHHHhHhc--CCCCH-HHHHHHHHHhCCCcchhhhhhh
Q 025268 49 KRRLTVDQVKALEKNFEVD--NKLEP-DRKVKLAEELGLQPRQIAVWFQ 94 (255)
Q Consensus 49 r~r~t~~Ql~~Le~~F~~~--~~ps~-~~r~~LA~~LgL~~rqVqvWFQ 94 (255)
+++|+.++....-..+... .+++. .....+|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568888765544444222 12221 3567899999999999999974
No 118
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.56 E-value=39 Score=22.45 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=15.8
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHH
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAE 136 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e 136 (255)
....|......|..++..|..++..|+.+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666555543
No 119
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.12 E-value=1.2e+02 Score=23.68 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=26.1
Q ss_pred CCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhH
Q 025268 48 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRR 97 (255)
Q Consensus 48 kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRR 97 (255)
..+.|+..++..|. .+.. .+.+|++-..|+..+...+
T Consensus 51 g~R~Y~~~dl~~l~------------~I~~-lr~~G~sL~eIk~~l~~~~ 87 (148)
T 3gpv_A 51 GDRIFNEEALKYLE------------MILC-LKNTGMPIQKIKQFIDWSM 87 (148)
T ss_dssp CCEEBCHHHHHHHH------------HHHH-HHTTTCCHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHH------------HHHH-HHHcCCCHHHHHHHHHhhh
Confidence 34569999999884 2333 4778888888888776543
No 120
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.69 E-value=27 Score=19.80 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025268 124 NNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 124 ~~l~~en~~l~~e~~~l~~~l 144 (255)
+.|.-+|+.|...+..|+.++
T Consensus 3 dalefendaleqkiaalkqki 23 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHH
Confidence 345556666666666666655
No 121
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.26 E-value=33 Score=24.63 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 51 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
.++..+..+|...+. . .+ ..+||..||++..-|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~--g-~s---~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--G-LT---NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHT--T-CC---HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHc--C-CC---HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 489999999988532 2 22 3578999999999999887765555443
No 122
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.75 E-value=75 Score=23.19 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 113 KANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 113 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
+.....+......|..+|..|+.++..|+..+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677778888888888887777665
No 123
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.52 E-value=68 Score=19.43 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 119 LRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 119 l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
|....+.|..+|..|..|+.+|++-|.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 444556788888888888888887664
No 124
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=37.06 E-value=60 Score=23.10 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 116 YDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 116 ~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
+..|......+..+++.|+.++..|+.+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666667777777777777777777664
No 125
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=36.47 E-value=43 Score=18.80 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 025268 119 LRLDYNNLQQENEALTAELREL 140 (255)
Q Consensus 119 l~~~~~~l~~en~~l~~e~~~l 140 (255)
++.+-..|+-+...|+.|++.|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4455566666666666666655
No 126
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.99 E-value=43 Score=22.02 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=33.3
Q ss_pred CcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 50 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 50 ~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
..+++.+..+|...+ ..+ ...++|..+|++...|..+..+-+.+.+
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 458999999998743 222 3457899999999999988875554443
No 127
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.55 E-value=69 Score=22.57 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 116 YDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 116 ~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
...|......+..+.+.|+.++..|+.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666777777777777777777764
No 128
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.27 E-value=43 Score=25.06 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 51 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
.+++.+..+|. .|-. . ....+||..||++...|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~~-g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-G----YSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTT-T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-C----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46777777777 3321 1 23457899999999999887765444433
No 129
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.25 E-value=40 Score=22.24 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHhHhc--CCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 51 RLTVDQVKALEKNFEVD--NKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~--~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
.+++.+..+|...|-.. .-.+ -.++|..+|++...|+.+...-+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s---~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYT---LEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCCC---HHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 37888888888887321 1222 357899999999999987765554444
No 130
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.19 E-value=51 Score=22.07 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHhHhc--CCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 51 RLTVDQVKALEKNFEVD--NKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~--~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
.+++.+..+|...|-.. .-.+ -.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 37888999998888421 1223 347899999999999987765444443
No 131
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=32.86 E-value=73 Score=24.35 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCCCcCCHHHHHHHHHHhHh-----cCCCCHHHHHHHHHHhCCCcc
Q 025268 47 EKKRRLTVDQVKALEKNFEV-----DNKLEPDRKVKLAEELGLQPR 87 (255)
Q Consensus 47 ~kr~r~t~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgL~~r 87 (255)
+++..+|.+|+..|...|.. +.+.+..+...+...||..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34567999999999999974 457899998888888987654
No 132
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.14 E-value=1.3e+02 Score=27.50 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025268 105 LERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQEN 148 (255)
Q Consensus 105 ~~~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~~~ 148 (255)
.+...+..+...+....+.+.+++++++++.++.++..++.+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 34445556666667777777788888888888888877776443
No 133
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=32.00 E-value=85 Score=20.79 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=13.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 025268 116 YDALRLDYNNLQQENEALTAELRELKA 142 (255)
Q Consensus 116 ~~~l~~~~~~l~~en~~l~~e~~~l~~ 142 (255)
|+.|-..-+.|+.||-.|+.|++.--.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 444444445555555555555544333
No 134
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=31.86 E-value=42 Score=23.80 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=22.7
Q ss_pred HHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhHHH
Q 025268 57 VKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKE 104 (255)
Q Consensus 57 l~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kkk~ 104 (255)
+.++.-.|..++||+++-- +|- =.|||.+|+..+
T Consensus 18 vRiIkiLyQSNP~P~p~GT-----------rqa---RRNRRRRWR~RQ 51 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQ 51 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSC-----------HHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCc-----------hHH---HHHHHHHHHHHH
Confidence 4455666888999886521 111 169999999866
No 135
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.82 E-value=1.2e+02 Score=20.41 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=21.1
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 113 KANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 113 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
+.....|......|..+|..|..++..|+..+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777777777766665543
No 136
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.58 E-value=1.9e+02 Score=22.69 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 107 RDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 107 ~~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
.....+......++.+...++...+.+..++.+|+.++.
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444445555444444443
No 137
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=31.57 E-value=1.2e+02 Score=20.47 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=28.8
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQE 147 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~~ 147 (255)
....||..+..|-.....|+........|+.+|..-|.+.
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456677777777777777777777777888877766654
No 138
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=31.34 E-value=81 Score=18.44 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 025268 117 DALRLDYNNLQQENEALTAELRELKA 142 (255)
Q Consensus 117 ~~l~~~~~~l~~en~~l~~e~~~l~~ 142 (255)
.+|+.+...|++|...|+-|+..|+.
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555555555555555555543
No 139
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.04 E-value=83 Score=18.96 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 119 LRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 119 l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
|...-+.|..+|..|..|+.+|++-|.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 334456788888888888888887553
No 140
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.51 E-value=77 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=9.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 025268 119 LRLDYNNLQQENEALTAELREL 140 (255)
Q Consensus 119 l~~~~~~l~~en~~l~~e~~~l 140 (255)
+..+.+.|+.+|+.|+.++..|
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 141
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.43 E-value=67 Score=22.18 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 51 RLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 51 r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
.++..+..+|...+ .. . ...++|..+|++...|+.+..+-+.|.+.
T Consensus 21 ~Lt~~e~~vl~l~~--~g-~---s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLIA--QG-L---PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHHT--TT-C---CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHH--cC-C---CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 48999999998743 22 2 34578999999999999887765555443
No 142
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.21 E-value=85 Score=23.60 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=25.0
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELRE 139 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~ 139 (255)
.+..++...+.|..+++.|+++++.|..++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788888888888888888887755
No 143
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=30.20 E-value=77 Score=18.30 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025268 124 NNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 124 ~~l~~en~~l~~e~~~l~~~l 144 (255)
.+|..+|.+|++.+++|-.+.
T Consensus 9 asleaenkqlkakveellakv 29 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777766554
No 144
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=29.58 E-value=1.2e+02 Score=21.74 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=36.4
Q ss_pred CCCcCCHHHHHHHHHHhHh-----cCCCCHHHHHHHHHHhCC--Ccchhhhhhh
Q 025268 48 KKRRLTVDQVKALEKNFEV-----DNKLEPDRKVKLAEELGL--QPRQIAVWFQ 94 (255)
Q Consensus 48 kr~r~t~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgL--~~rqVqvWFQ 94 (255)
+...++.+++..|...|.. +.+.+..+...+...+|+ +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445899999999999975 457999999888888885 5566776664
No 145
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.89 E-value=40 Score=22.59 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 52 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 52 ~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
+++.+..+|...+ .. .+ ..++|..+|++...|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~--~g-~s---~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AG-LP---NKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TT-CC---HHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cC-CC---HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 6777888887743 22 22 3478999999999999888766655554
No 146
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.79 E-value=57 Score=22.76 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhHhc--CCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 52 LTVDQVKALEKNFEVD--NKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 52 ~t~~Ql~~Le~~F~~~--~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
+++.+..+|...|-.. .-.+ -.+||..+|++...|+.+...-+.+-+
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s---~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKT---LEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHccCCCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7888888988887421 2223 447899999999999988765554444
No 147
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.60 E-value=71 Score=26.62 Aligned_cols=33 Identities=18% Similarity=0.023 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 112 LKANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 112 lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
....++-+...+..|..+|.+|++++++|+...
T Consensus 143 i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 143 IRELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555544444433
No 148
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.66 E-value=1.1e+02 Score=18.75 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 025268 119 LRLDYNNLQQENEALTAELRELKAKLCQ 146 (255)
Q Consensus 119 l~~~~~~l~~en~~l~~e~~~l~~~l~~ 146 (255)
|...-+.|..++..|..|+.+|++.+.+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4445566778888888888888887753
No 149
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.13 E-value=2.5e+02 Score=23.31 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHhHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHh
Q 025268 104 ELERDYGLLKANYDALRLD----YNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 104 ~~~~~~~~lk~~~~~l~~~----~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
.+..+...++..+.....+ ...|..+...|+.....|+.++.
T Consensus 67 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 67 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433 33344444444444444444443
No 150
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.11 E-value=1.8e+02 Score=21.03 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 025268 118 ALRLDYNNLQQENEALTAELRELKAKLCQ 146 (255)
Q Consensus 118 ~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 146 (255)
.....-......|+.|..+++.|+.+|.+
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556677777777777777765
No 151
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=26.73 E-value=72 Score=24.78 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 52 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 52 ~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
+++.+..+|...|-.. . .-.++|..+|++...|+.+...-|.+.|
T Consensus 141 L~~~~r~vl~l~~~~g--~---s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--L---SYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTC--C---CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6777777776655322 2 2357899999999999988765554444
No 152
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.50 E-value=1.3e+02 Score=19.08 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=16.8
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 144 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l 144 (255)
+...|...++.++..+-.-+.-..-|..|+..|+.++
T Consensus 11 evaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 11 EVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444333333333344555666666554
No 153
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.31 E-value=1.2e+02 Score=18.66 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 025268 126 LQQENEALTAELREL 140 (255)
Q Consensus 126 l~~en~~l~~e~~~l 140 (255)
-..+..+|+.++.+|
T Consensus 19 KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 19 KDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHH
Confidence 333334444444443
No 154
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.07 E-value=93 Score=17.42 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025268 124 NNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 124 ~~l~~en~~l~~e~~~l~~~l~ 145 (255)
+.|-++.+.|++.++.|+.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566667777777777664
No 155
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.89 E-value=1.4e+02 Score=22.49 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=7.1
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 025268 119 LRLDYNNLQQENEALTAE 136 (255)
Q Consensus 119 l~~~~~~l~~en~~l~~e 136 (255)
|..+.+.|+.+|..|+.|
T Consensus 70 Le~everL~~ENq~L~~e 87 (104)
T 3s9g_A 70 LELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444433
No 156
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.67 E-value=1.2e+02 Score=28.56 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 025268 127 QQENEALTAELRELKA 142 (255)
Q Consensus 127 ~~en~~l~~e~~~l~~ 142 (255)
++|+..+.+++++|.+
T Consensus 564 ~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 564 RQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 157
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.49 E-value=1.5e+02 Score=19.67 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=23.4
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 113 KANYDALRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 113 k~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
+.....|......|..+|..|..++..|+..+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777888888887777776653
No 158
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.44 E-value=1.3e+02 Score=21.22 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=21.5
Q ss_pred HHhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025268 108 DYGLLKANYDALRLDYNNLQQENEALTAELREL 140 (255)
Q Consensus 108 ~~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l 140 (255)
....|+.....+..+.+.|+.+++.|+.++..|
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344555556667777777777777777776543
No 159
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.32 E-value=93 Score=22.87 Aligned_cols=42 Identities=10% Similarity=0.164 Sum_probs=30.9
Q ss_pred CcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhh
Q 025268 50 RRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNR 96 (255)
Q Consensus 50 ~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNR 96 (255)
..++.++...+...+... .+ ..++|..+|++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~s---~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHHcc
Confidence 457888777666666432 22 4578999999999999999753
No 160
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=24.29 E-value=1.5e+02 Score=19.29 Aligned_cols=38 Identities=21% Similarity=0.073 Sum_probs=24.8
Q ss_pred HhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 025268 109 YGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQ 146 (255)
Q Consensus 109 ~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 146 (255)
...||..++.|-.....|......+..|+.+|+.=|..
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 34566666777666666766666777777777665543
No 161
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.24 E-value=74 Score=25.46 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHhh
Q 025268 52 LTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 (255)
Q Consensus 52 ~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNRRak~K 101 (255)
+++.+..+|...|-.. . ...+||..+|++...|+.+...-|.+.|
T Consensus 188 L~~~~r~vl~l~~~~g--~---s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE--L---PAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp SCHHHHHHHHHHHTSC--C---CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC--C---CHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 7777777877766322 2 3457899999999999887765554444
No 162
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=23.94 E-value=28 Score=22.09 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 025268 75 KVKLAEELGLQPRQIAVWFQNRR 97 (255)
Q Consensus 75 r~~LA~~LgL~~rqVqvWFQNRR 97 (255)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998765
No 163
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.81 E-value=2.5e+02 Score=21.60 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=25.3
Q ss_pred CCCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhh
Q 025268 48 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNR 96 (255)
Q Consensus 48 kr~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNR 96 (255)
..+.|+..++..|. .+.. .+.+|++-..|+..+...
T Consensus 37 g~R~Y~~~dl~~l~------------~I~~-lr~~G~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 37 GVRKFGAEDLRWIL------------FTRQ-MRRAGLSIEALIDYLALF 72 (142)
T ss_dssp SCBCBCHHHHHHHH------------HHHH-HHHTTCCHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHH------------HHHH-HHHcCCCHHHHHHHHHHH
Confidence 34569999999884 2333 477888888888776543
No 164
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=23.46 E-value=22 Score=27.81 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 025268 75 KVKLAEELGLQPRQIAVWFQNRR 97 (255)
Q Consensus 75 r~~LA~~LgL~~rqVqvWFQNRR 97 (255)
...+|..+|+++.+++.|+...|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 57789999999999999986444
No 165
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.32 E-value=2e+02 Score=22.24 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=8.6
Q ss_pred CCcchhhhhhhhhHH
Q 025268 84 LQPRQIAVWFQNRRA 98 (255)
Q Consensus 84 L~~rqVqvWFQNRRa 98 (255)
|.....+.|=||+--
T Consensus 41 l~~~eaQAaTCNqTV 55 (121)
T 3mq7_A 41 FQDVEAQAATANHTV 55 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556667777643
No 166
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=23.23 E-value=34 Score=23.19 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 025268 75 KVKLAEELGLQPRQIAVWFQNRR 97 (255)
Q Consensus 75 r~~LA~~LgL~~rqVqvWFQNRR 97 (255)
..+||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998766
No 167
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=23.13 E-value=1.3e+02 Score=18.07 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 119 LRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 119 l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
|....+.|..+|..|..|+.+|++-|.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 334456678888888888888887664
No 168
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=22.99 E-value=31 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHH
Q 025268 75 KVKLAEELGLQPRQIAVWFQNRRA 98 (255)
Q Consensus 75 r~~LA~~LgL~~rqVqvWFQNRRa 98 (255)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 457999999999999999987654
No 169
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.66 E-value=1.4e+02 Score=18.09 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=19.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 025268 119 LRLDYNNLQQENEALTAELRELKAKLC 145 (255)
Q Consensus 119 l~~~~~~l~~en~~l~~e~~~l~~~l~ 145 (255)
|....+.|..+|..|..|+.+|++-|.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 334456678888888888888887664
No 170
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.60 E-value=2.5e+02 Score=26.22 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=9.9
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHH
Q 025268 113 KANYDALRLDYNNLQQENEALTAEL 137 (255)
Q Consensus 113 k~~~~~l~~~~~~l~~en~~l~~e~ 137 (255)
+...+..+..++.++++.+.++..+
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHH
Confidence 3333333344444444444444433
No 171
>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} SCOP: g.3.6.1
Probab=22.44 E-value=44 Score=18.91 Aligned_cols=12 Identities=42% Similarity=1.290 Sum_probs=8.9
Q ss_pred CCCCCCCCCCcC
Q 025268 232 NPEDPCNIFSVD 243 (255)
Q Consensus 232 ~~~~~~~~f~~~ 243 (255)
..+|+|+.|+-+
T Consensus 3 QagE~Cdvfsqn 14 (26)
T 1f3k_A 3 QADEPCDVFSLD 14 (26)
T ss_dssp CTTCCCCSSSCC
T ss_pred ccCCcccccccc
Confidence 357999999743
No 172
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.30 E-value=51 Score=20.90 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=21.1
Q ss_pred HHHHHHhCCCcchhhhhhhhhHHHhhH
Q 025268 76 VKLAEELGLQPRQIAVWFQNRRARLKS 102 (255)
Q Consensus 76 ~~LA~~LgL~~rqVqvWFQNRRak~Kk 102 (255)
.++|..+|+++.-|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 478999999999999887765555443
No 173
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.29 E-value=1e+02 Score=21.63 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=20.5
Q ss_pred HhHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 025268 109 YGLLKANYDALRLDYNNLQQENEALTAELREL 140 (255)
Q Consensus 109 ~~~lk~~~~~l~~~~~~l~~en~~l~~e~~~l 140 (255)
...|......+..+.+.|+.++..|..++..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555566667777777777777776554
No 174
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=22.16 E-value=57 Score=22.30 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 025268 75 KVKLAEELGLQPRQIAVWFQNRR 97 (255)
Q Consensus 75 r~~LA~~LgL~~rqVqvWFQNRR 97 (255)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999998765
No 175
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.06 E-value=2.6e+02 Score=23.19 Aligned_cols=35 Identities=17% Similarity=0.036 Sum_probs=25.2
Q ss_pred CCcCCHHHHHHHHHHhHhcCCCCHHHHHHHHHHhCCCcchhhhhhhhh
Q 025268 49 KRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNR 96 (255)
Q Consensus 49 r~r~t~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgL~~rqVqvWFQNR 96 (255)
.|.++..++..|. .+ ...+.+|++-.+|+..+.++
T Consensus 42 ~R~y~~~~~~~l~------------~i-~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 42 YRYYTDSQLIHLD------------LI-KSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp CEEEETGGGGHHH------------HH-HHHHHTTCCHHHHHHHTTSC
T ss_pred ccccCHHHHHHHH------------HH-HHHHHCCCCHHHHHHHHHhC
Confidence 3458888888773 23 33478899998888888765
No 176
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=21.03 E-value=36 Score=22.35 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHH
Q 025268 75 KVKLAEELGLQPRQIAVWFQNRRA 98 (255)
Q Consensus 75 r~~LA~~LgL~~rqVqvWFQNRRa 98 (255)
..+||..+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357999999999999999987653
No 177
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.88 E-value=35 Score=22.07 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHH
Q 025268 75 KVKLAEELGLQPRQIAVWFQNRRA 98 (255)
Q Consensus 75 r~~LA~~LgL~~rqVqvWFQNRRa 98 (255)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 357999999999999999988765
No 178
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.55 E-value=1.8e+02 Score=20.90 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=25.5
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 025268 115 NYDALRLDYNNLQQENEALTAELRELKAKLCQ 146 (255)
Q Consensus 115 ~~~~l~~~~~~l~~en~~l~~e~~~l~~~l~~ 146 (255)
....|......+..+.+.|+.++..|+.++..
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888999999999888863
Done!