Your job contains 1 sequence.
>025270
MEFNYAKFKALFRTNNNFRLQRPVADWAKSSGVKQFLFISSAGIYKPADEPPHVEGDVVK
PDAGHVQVEKYISENFSNWASFRPQYMIGSGNNKDCEEWFFDRIVRKRPVPIPGSGMQFT
NIAHVRDLSSMLTLAVENPEAASSNIFNLVSDRAVTLDGMAKLCAQAAGLPVEIVHYDPK
AAGIDAKKAFPFRNMHFYAEPRAAKDILGWRSTTNLPEDLKERFEEYVKIGRDKKAMQFE
IDDKILESLKVPIPV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025270
(255 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2099222 - symbol:CSP41A "AT3G63140" species:37... 1043 2.2e-105 1
TAIR|locus:2203028 - symbol:CRB "chloroplast RNA binding"... 447 3.2e-42 1
WB|WBGene00018737 - symbol:F53B1.4 species:6239 "Caenorha... 117 0.00016 1
>TAIR|locus:2099222 [details] [associations]
symbol:CSP41A "AT3G63140" species:3702 "Arabidopsis
thaliana" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IGI;RCA] [GO:0048046
"apoplast" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032544 "plastid translation" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009637
"response to blue light" evidence=RCA] [GO:0009657 "plastid
organization" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0015979
"photosynthesis" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019684 "photosynthesis,
light reaction" evidence=RCA] [GO:0030154 "cell differentiation"
evidence=RCA] InterPro:IPR016040 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0008266
eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0048046
GO:GO:0007623 GO:GO:0009941 GO:GO:0009658 GO:GO:0005840
GO:GO:0009534 GO:GO:0010287 GO:GO:0045727 GO:GO:0019843
GO:GO:0010319 GO:GO:0006364 EMBL:AL163816 EMBL:AF428269
EMBL:AY059887 EMBL:AY128804 IPI:IPI00516646 PIR:T48103
RefSeq:NP_191873.1 UniGene:At.48804 UniGene:At.5159
ProteinModelPortal:Q9LYA9 SMR:Q9LYA9 STRING:Q9LYA9 PaxDb:Q9LYA9
PRIDE:Q9LYA9 ProMEX:Q9LYA9 EnsemblPlants:AT3G63140.1 GeneID:825489
KEGG:ath:AT3G63140 TAIR:At3g63140 HOGENOM:HOG000232785
InParanoid:Q9LYA9 OMA:EYVKIGR PhylomeDB:Q9LYA9 ProtClustDB:PLN00016
Genevestigator:Q9LYA9 GO:GO:0032544 Uniprot:Q9LYA9
Length = 406
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 195/232 (84%), Positives = 208/232 (89%)
Query: 22 RPVADWAKSSGVKQFLFISSAGIYKPADEPPHVEGDVVKPDAGHVQVEKYISENFSNWAS 81
RPV DWAKSSGVKQFLFISSAGIYK ++PPHVEGD VK DAGHV VEKY++E F NWAS
Sbjct: 173 RPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWAS 232
Query: 82 FRPQYMIGSGNNKDCEEWFFDRIVRKRPVPIPGSGMQFTNIAHVRDLSSMLTLAVENPEA 141
FRPQYMIGSGNNKDCEEWFFDRIVR R VPIPGSG+Q TNI+HVRDLSSMLT AV NPEA
Sbjct: 233 FRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEA 292
Query: 142 ASSNIFNLVSDRAVTLDGMAKLCAQAAGLPVEIVHYDPKAAGIDAKKAFPFRNMHFYAEP 201
AS NIFN VSDRAVTLDGMAKLCA AAG VEIVHYDPKA G+DAKKAF FRNMHFYAEP
Sbjct: 293 ASGNIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEP 352
Query: 202 RAAKDILGWRSTTNLPEDLKERFEEYVKIGRDKKAMQFEIDDKILESLKVPI 253
RAAKD+LGW S TNLPEDLKERFEEYVKIGRDKK ++FE+DDKILE+LK P+
Sbjct: 353 RAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPV 404
>TAIR|locus:2203028 [details] [associations]
symbol:CRB "chloroplast RNA binding" species:3702
"Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0005773 "vacuole" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0009611 "response to wounding" evidence=IEP]
[GO:0010319 "stromule" evidence=IDA] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IEP;RCA] [GO:0042742 "defense response to bacterium"
evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=IEP;IMP] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IGI;RCA] [GO:0048046 "apoplast" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0032544 "plastid translation"
evidence=IMP] [GO:0045727 "positive regulation of translation"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA;IMP] [GO:0005996 "monosaccharide
metabolic process" evidence=IMP] [GO:0010297 "heteropolysaccharide
binding" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0006636 "unsaturated fatty
acid biosynthetic process" evidence=RCA] [GO:0009595 "detection of
biotic stimulus" evidence=RCA] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
[GO:0009697 "salicylic acid biosynthetic process" evidence=RCA]
[GO:0009814 "defense response, incompatible interaction"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010200 "response to chitin" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0010218 "response to
far red light" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0030154 "cell
differentiation" evidence=RCA] [GO:0031348 "negative regulation of
defense response" evidence=RCA] [GO:0034660 "ncRNA metabolic
process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0043085 "positive regulation of
catalytic activity" evidence=RCA] [GO:0043900 "regulation of
multi-organism process" evidence=RCA] [GO:0050832 "defense response
to fungus" evidence=RCA] InterPro:IPR016040 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009506 GO:GO:0005773 GO:GO:0045893
GO:GO:0009611 GO:GO:0005777 GO:GO:0016020 eggNOG:COG0451
GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0048046 GO:GO:0007623
GO:GO:0000272 GO:GO:0009409 GO:GO:0042742 GO:GO:0009941
GO:GO:0009658 GO:GO:0003723 GO:GO:0005840 GO:GO:0010287
GO:GO:0045727 GO:GO:0019843 GO:GO:0010319 GO:GO:0042631
GO:GO:0006364 HOGENOM:HOG000232785 ProtClustDB:PLN00016
GO:GO:0032544 EMBL:Y10557 EMBL:Y15382 EMBL:AC006416 EMBL:AY070022
EMBL:AF428282 EMBL:AY035050 EMBL:AF325043 EMBL:AY062570
EMBL:AY087609 IPI:IPI00548101 PIR:E86226 PIR:T51863 PIR:T52072
RefSeq:NP_172405.1 UniGene:At.21708 UniGene:At.50307
ProteinModelPortal:Q9SA52 SMR:Q9SA52 STRING:Q9SA52 PaxDb:Q9SA52
PRIDE:Q9SA52 ProMEX:Q9SA52 EnsemblPlants:AT1G09340.1 GeneID:837455
KEGG:ath:AT1G09340 TAIR:At1g09340 InParanoid:Q9SA52 OMA:PTYIYGP
PhylomeDB:Q9SA52 Genevestigator:Q9SA52 GO:GO:0010297 GO:GO:0005996
Uniprot:Q9SA52
Length = 378
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 90/218 (41%), Positives = 126/218 (57%)
Query: 33 VKQFLFISSAGIYKPADEPPHVEGDVVKPDAGH---VQVEKYISENFSNWASFRPQYMIG 89
++Q+++ SSAG+Y +D PH E D V P + H ++ E + NW S RP Y+ G
Sbjct: 155 LEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYG 214
Query: 90 SGNNKDCEEWFFDRIVRKRPVPIPGSGMQFTNIAHVRDLSSMLTLAVENPEAASSNIFNL 149
N EEWFF R+ RP+P+P SG+Q + + HV+DL++ + N E AS IFN+
Sbjct: 215 PLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGN-EKASREIFNI 273
Query: 150 VSDRAVTLDGMAKLCAQAAGLPV-EIVHYDPKAAGIDAKKAFPFRNMHFYAEPRAAKDIL 208
++ VT DG+AK CA+A G P EIVHY+PK KKAFPFR+ HF+A AK +L
Sbjct: 274 SGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVL 333
Query: 209 GWRSTTNLPEDLKERFEEYVKIGRDKKAMQFEIDDKIL 246
GW+ +L E L + + G +K F DD IL
Sbjct: 334 GWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMIL 371
>WB|WBGene00018737 [details] [associations]
symbol:F53B1.4 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0050662 "coenzyme
binding" evidence=IEA] [GO:0003854 "3-beta-hydroxy-delta5-steroid
dehydrogenase activity" evidence=IEA] [GO:0006694 "steroid
biosynthetic process" evidence=IEA] [GO:0016616 "oxidoreductase
activity, acting on the CH-OH group of donors, NAD or NADP as
acceptor" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009058 "biosynthetic process" evidence=IEA]
[GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=IEA]
[GO:0009225 "nucleotide-sugar metabolic process" evidence=IEA]
[GO:0008831 "dTDP-4-dehydrorhamnose reductase activity"
evidence=IEA] [GO:0045226 "extracellular polysaccharide
biosynthetic process" evidence=IEA] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] InterPro:IPR001509
InterPro:IPR005888 Pfam:PF01370 InterPro:IPR016040 GO:GO:0000166
Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0009225 GO:GO:0040017
GeneTree:ENSGT00530000063128 EMBL:FO081052 GO:GO:0008460
eggNOG:COG1088 HOGENOM:HOG000168006 KO:K01710
PANTHER:PTHR10366:SF41 OMA:AYNDARY HSSP:P26391 PIR:T16444
RefSeq:NP_508390.1 UniGene:Cel.908 ProteinModelPortal:Q20697
SMR:Q20697 STRING:Q20697 PaxDb:Q20697 EnsemblMetazoa:F53B1.4
GeneID:180525 KEGG:cel:CELE_F53B1.4 UCSC:F53B1.4 CTD:180525
WormBase:F53B1.4 InParanoid:Q20697 NextBio:909738 Uniprot:Q20697
Length = 342
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 45/211 (21%), Positives = 86/211 (40%)
Query: 32 GVKQFLFISSAGIYKPA--DEPPHVEGDVVKPDAGHVQVEKYISENF--SNWASFRPQYM 87
GVK+ + IS+ +Y + D P E + K E S W S++ Y+
Sbjct: 128 GVKKLVHISTDEVYGDSFEDTTPKSESASLPNPTNPYAASKAACEMVIRSYWHSYKLPYV 187
Query: 88 IGSGNNKDCEEWFFDRIVRK--------RPVPIPGSGMQFTNIAHVRDLSSMLTLAVENP 139
+ NN +++ K +P P+ G G+ + +V D S +T
Sbjct: 188 MVRMNNVYGPRQIHTKLIPKFTKLALDGKPYPLMGDGLHTRSWMYVEDCSEAITRVAL-- 245
Query: 140 EAASSNIFNLVSDRAVTLDGMAKLCAQAAGLPVEIVHYDPKAAGIDAKKAFPFRNMHFYA 199
E I+N+ +D +T + K+ ++++ +P A P+ + +Y
Sbjct: 246 EGTLGEIYNIGTDFEMTNIELTKMIHFTVS---KLLNREPTAPTFAPIPDRPYHDRRYYI 302
Query: 200 EPRAAKDILGWRSTTNLPEDLKERFEEYVKI 230
+ ++ +GW+ TT E L + + YVK+
Sbjct: 303 DFSKIRNAMGWQCTTPFSEGLMKTIDYYVKL 333
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 255 255 0.00085 114 3 11 22 0.45 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 613 (65 KB)
Total size of DFA: 205 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.50u 0.10s 22.60t Elapsed: 00:00:01
Total cpu time: 22.50u 0.10s 22.60t Elapsed: 00:00:01
Start: Fri May 10 01:20:21 2013 End: Fri May 10 01:20:22 2013