Query 025272
Match_columns 255
No_of_seqs 162 out of 1269
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.3E-38 5E-43 298.0 19.5 184 64-253 81-275 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 5.3E-37 1.2E-41 286.1 19.5 193 56-254 35-240 (398)
3 PF14543 TAXi_N: Xylanase inhi 100.0 3.3E-33 7E-38 231.0 15.3 156 68-237 1-164 (164)
4 cd05475 nucellin_like Nucellin 100.0 1.5E-32 3.3E-37 243.8 19.1 151 66-253 1-153 (273)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 7.1E-32 1.5E-36 245.2 19.9 180 66-253 2-207 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 8.3E-31 1.8E-35 237.2 20.0 164 65-252 8-183 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 1.7E-30 3.8E-35 235.7 18.6 163 64-252 3-183 (325)
8 cd05477 gastricsin Gastricsins 100.0 3.1E-30 6.6E-35 233.4 20.1 162 65-252 1-177 (318)
9 PTZ00165 aspartyl protease; Pr 100.0 2.6E-30 5.6E-35 245.8 19.7 179 54-253 109-304 (482)
10 cd06097 Aspergillopepsin_like 100.0 3.1E-30 6.8E-35 229.3 18.6 163 68-253 1-175 (278)
11 cd05488 Proteinase_A_fungi Fun 100.0 6.7E-30 1.5E-34 231.6 18.8 163 64-252 7-183 (320)
12 cd06098 phytepsin Phytepsin, a 100.0 8.2E-30 1.8E-34 230.9 18.8 164 64-253 7-187 (317)
13 cd05486 Cathespin_E Cathepsin 100.0 6.7E-30 1.5E-34 231.1 17.8 159 68-252 1-175 (316)
14 PTZ00147 plasmepsin-1; Provisi 100.0 1.5E-29 3.3E-34 238.9 19.6 172 54-252 128-313 (453)
15 cd05472 cnd41_like Chloroplast 100.0 7.8E-30 1.7E-34 228.8 15.2 138 67-254 1-142 (299)
16 cd05485 Cathepsin_D_like Cathe 100.0 3.1E-29 6.6E-34 228.3 18.5 163 64-252 8-188 (329)
17 cd05471 pepsin_like Pepsin-lik 100.0 1.3E-28 2.8E-33 217.1 19.6 162 68-253 1-177 (283)
18 cd05489 xylanase_inhibitor_I_l 100.0 3.8E-29 8.3E-34 230.7 16.4 169 74-254 2-195 (362)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.8E-28 3.9E-33 231.4 20.4 169 55-252 128-312 (450)
20 cd05487 renin_like Renin stimu 100.0 2.6E-28 5.6E-33 221.8 18.8 162 64-252 5-184 (326)
21 cd05476 pepsin_A_like_plant Ch 100.0 8.9E-28 1.9E-32 212.2 16.2 136 67-253 1-141 (265)
22 cd05473 beta_secretase_like Be 100.0 4.5E-27 9.8E-32 216.7 18.6 160 67-252 3-184 (364)
23 cd05474 SAP_like SAPs, pepsin- 99.9 7.4E-25 1.6E-29 195.5 16.6 130 67-253 2-147 (295)
24 PF00026 Asp: Eukaryotic aspar 99.9 1.6E-25 3.6E-30 200.7 9.5 162 67-252 1-176 (317)
25 cd05470 pepsin_retropepsin_lik 99.9 2.4E-22 5.2E-27 154.2 12.7 107 70-200 1-109 (109)
26 cd05483 retropepsin_like_bacte 97.5 0.0003 6.6E-09 51.6 6.6 94 66-202 1-94 (96)
27 TIGR02281 clan_AA_DTGA clan AA 92.6 0.27 5.9E-06 38.4 5.1 102 56-202 2-103 (121)
28 PF13650 Asp_protease_2: Aspar 92.1 1.4 3E-05 31.3 8.1 24 71-96 2-25 (90)
29 cd05484 retropepsin_like_LTR_2 87.7 0.65 1.4E-05 33.9 3.3 28 68-97 1-28 (91)
30 PF13975 gag-asp_proteas: gag- 80.4 3.3 7.1E-05 29.0 4.1 31 65-97 6-36 (72)
31 PF00077 RVP: Retroviral aspar 73.3 5.5 0.00012 29.2 3.8 27 69-97 7-33 (100)
32 cd05479 RP_DDI RP_DDI; retrope 72.7 6.4 0.00014 30.5 4.2 31 65-97 14-44 (124)
33 cd05482 HIV_retropepsin_like R 57.6 15 0.00032 27.0 3.4 24 71-96 2-25 (87)
34 COG3577 Predicted aspartyl pro 54.1 31 0.00067 29.6 5.2 77 55-166 95-171 (215)
35 cd06095 RP_RTVL_H_like Retrope 53.5 17 0.00037 26.1 3.2 20 78-97 7-26 (86)
36 PF09882 DUF2109: Predicted me 41.5 3.7 8E-05 29.4 -1.9 20 6-25 57-76 (78)
37 PF12384 Peptidase_A2B: Ty3 tr 39.6 42 0.00091 27.9 3.7 28 70-97 35-62 (177)
38 PF09668 Asp_protease: Asparty 30.4 89 0.0019 24.5 4.1 31 65-97 22-52 (124)
39 cd05472 cnd41_like Chloroplast 28.6 50 0.0011 29.1 2.8 17 81-97 172-188 (299)
40 cd05475 nucellin_like Nucellin 26.2 73 0.0016 27.8 3.3 32 66-97 157-194 (273)
41 TIGR03698 clan_AA_DTGF clan AA 21.9 1.2E+02 0.0025 22.8 3.3 23 70-92 2-28 (107)
42 cd06097 Aspergillopepsin_like 20.7 75 0.0016 27.7 2.3 32 66-97 177-215 (278)
43 cd06096 Plasmepsin_5 Plasmepsi 20.2 80 0.0017 28.4 2.4 32 66-97 208-248 (326)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=298.02 Aligned_cols=184 Identities=35% Similarity=0.642 Sum_probs=153.8
Q ss_pred CCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCC----CCCCCCcccccCCCCCCCCCCCC
Q 025272 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDP 139 (255)
Q Consensus 64 ~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S----~v~C~s~~C~~~~~~~~~~C~~~ 139 (255)
.+++|+++|.||||||++.|++||||+++||+|. +|..|..+.++.|+|++| .++|.++.|..+.. ...|..+
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence 4789999999999999999999999999999999 999999888999999998 38999999987653 2347655
Q ss_pred CCceeeeecCCCceEeEEEEEEEEEEeecCCC-cCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchHHHhhhcCCcc
Q 025272 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQ-RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 218 (255)
Q Consensus 140 ~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~-~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~~Sl~~ql~~~g~i~ 218 (255)
+.|.|.+.|+||+.+.|.+++|+|+|+...+. ..++++.|||++++ .+......+||||||++++|+++||... +.
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~-~g~f~~~~~GilGLG~~~~Sl~sql~~~--~~ 234 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNN-GGTFDEKGSGIVGLGGGPLSLISQLGSS--IG 234 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCC-CCCccCCCceeEecCCCCccHHHHhhHh--hC
Confidence 67999999999988899999999999753322 35789999999886 3322235899999999999999999864 56
Q ss_pred ceEEEecCC-----CCCeEEEECCCCCCC-CCeEEEECccC
Q 025272 219 NVVGHCLSG-----GGGGFLFFGDDLYDS-SRVVWTSMSSD 253 (255)
Q Consensus 219 ~~FS~cL~~-----~~~G~l~fG~~~~~~-~~l~~tPli~~ 253 (255)
++|||||.+ ...|.|+||+...+. ..+.||||+.+
T Consensus 235 ~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~ 275 (431)
T PLN03146 235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSK 275 (431)
T ss_pred CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccC
Confidence 799999963 247999999865443 45999999864
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-37 Score=286.14 Aligned_cols=193 Identities=36% Similarity=0.669 Sum_probs=162.5
Q ss_pred EeeecCCCCCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCC-CCCCCCCCCCCCCCC----CCCCCCcccccCCC
Q 025272 56 FQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV-RCVEAPHPLYRPSND----LVPCEDPICASLHA 130 (255)
Q Consensus 56 ~p~~~~~~~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~-~C~~~~~~~f~p~~S----~v~C~s~~C~~~~~ 130 (255)
++...+.+.+++|+++|.||||||.|.|++||||+++||+|. +|. .|..+.++.|+|++| .+.|.++.|.....
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCcccccccc
Confidence 344444456889999999999999999999999999999998 999 898765666999999 48899999998763
Q ss_pred CCCCCCCCCCCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCC-CCcceEEeeCCCCCchHH
Q 025272 131 PGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASY-HPLDGILGLGKGKSSIVS 209 (255)
Q Consensus 131 ~~~~~C~~~~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~~~-~~~dGIlGLg~~~~Sl~~ 209 (255)
.|..++.|.|.+.|+||++++|.|++|+|+|+.++ ....++++|||+..+...+.. .+.|||||||++++|+++
T Consensus 114 ----~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 114 ----SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPS 188 (398)
T ss_pred ----CcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCccccccccccceEeecCCCCcccee
Confidence 36667899999999998799999999999997532 256678999999987421112 578999999999999999
Q ss_pred HhhhcCCccceEEEecCCC-----CCeEEEECCCCC--CCCCeEEEECccCC
Q 025272 210 QLHSQKLIRNVVGHCLSGG-----GGGFLFFGDDLY--DSSRVVWTSMSSDY 254 (255)
Q Consensus 210 ql~~~g~i~~~FS~cL~~~-----~~G~l~fG~~~~--~~~~l~~tPli~~~ 254 (255)
|+...+...++|||||.+. .+|.|+||++|. +.+.+.||||+.+.
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~ 240 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNP 240 (398)
T ss_pred ecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCC
Confidence 9998876777999999963 479999999986 46789999999875
No 3
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=3.3e-33 Score=231.02 Aligned_cols=156 Identities=42% Similarity=0.781 Sum_probs=123.7
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCC----CCCCCCcccccCCCCCCCCCCCCCCce
Q 025272 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDPAQCD 143 (255)
Q Consensus 68 Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S----~v~C~s~~C~~~~~~~~~~C~~~~~c~ 143 (255)
|+++|+||||+|++.|++||||+++|++|. .+.|+|.+| .+.|.++.|...+......|..+..|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~----------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP----------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC----------CcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 899999999999999999999999999883 478999988 499999999987643122233458999
Q ss_pred eeeecCCCceEeEEEEEEEEEEeecCCC-cCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchHHHhhhcCCccceEE
Q 025272 144 YELEYADGGSSLGVLVKDAFAFNYTNGQ-RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVG 222 (255)
Q Consensus 144 ~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~-~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~~Sl~~ql~~~g~i~~~FS 222 (255)
|.+.|++++.+.|.|++|+|+++..++. ....+++|||++... + .....+||||||++++||++||..+ ..++||
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~-g-~~~~~~GilGLg~~~~Sl~sQl~~~--~~~~FS 146 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNS-G-LFYGADGILGLGRGPLSLPSQLASS--SGNKFS 146 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGG-T-SSTTEEEEEE-SSSTTSHHHHHHHH----SEEE
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccc-c-CCcCCCcccccCCCcccHHHHHHHh--cCCeEE
Confidence 9999999999999999999999976433 456799999999874 3 2348999999999999999999887 789999
Q ss_pred EecCC---CCCeEEEECC
Q 025272 223 HCLSG---GGGGFLFFGD 237 (255)
Q Consensus 223 ~cL~~---~~~G~l~fG~ 237 (255)
|||++ ...|+|+||+
T Consensus 147 yCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 147 YCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEB-S-SSSSEEEEEECS
T ss_pred EECCCCCCCCCEEEEeCc
Confidence 99997 4689999995
No 4
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.5e-32 Score=243.85 Aligned_cols=151 Identities=67% Similarity=1.238 Sum_probs=129.1
Q ss_pred eeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceee
Q 025272 66 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (255)
Q Consensus 66 ~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~ 145 (255)
++|+++|+||||||++.|++||||+++||+|..+|..| .|.|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------~c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------QCDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------cCccE
Confidence 57999999999999999999999999999984244322 37899
Q ss_pred eecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCC--CCCCcceEEeeCCCCCchHHHhhhcCCccceEEE
Q 025272 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA--SYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGH 223 (255)
Q Consensus 146 ~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~--~~~~~dGIlGLg~~~~Sl~~ql~~~g~i~~~FS~ 223 (255)
+.|+|++.++|.+++|+|+|+.+++....+++.|||+..+.... ...+.|||||||++++|+++||.++++|+++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 99998889999999999999876666677899999998753221 2357899999999999999999999988999999
Q ss_pred ecCCCCCeEEEECCCCCCCCCeEEEECccC
Q 025272 224 CLSGGGGGFLFFGDDLYDSSRVVWTSMSSD 253 (255)
Q Consensus 224 cL~~~~~G~l~fG~~~~~~~~l~~tPli~~ 253 (255)
||++..+|.|+||+...+.+++.||||+.+
T Consensus 124 ~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~ 153 (273)
T cd05475 124 CLSSNGGGFLFFGDDLVPSSGVTWTPMRRE 153 (273)
T ss_pred EccCCCCeEEEECCCCCCCCCeeecccccC
Confidence 999766799999976556788999999876
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=7.1e-32 Score=245.21 Aligned_cols=180 Identities=27% Similarity=0.506 Sum_probs=142.1
Q ss_pred eeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCC----CCCCCCcccccCCCCCCCCCCCCCC
Q 025272 66 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDPAQ 141 (255)
Q Consensus 66 ~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S----~v~C~s~~C~~~~~~~~~~C~~~~~ 141 (255)
++|+++|+||||+|++.|+|||||+++||+|. +|..|..+.++.|+|++| .+.|++..|.. ...|. ++.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~-~~~ 74 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCL-NNK 74 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCC-CCc
Confidence 58999999999999999999999999999999 899998877889999988 38899999943 23564 368
Q ss_pred ceeeeecCCCceEeEEEEEEEEEEeecCCC---cCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCch----HHHhhhc
Q 025272 142 CDYELEYADGGSSLGVLVKDAFAFNYTNGQ---RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSI----VSQLHSQ 214 (255)
Q Consensus 142 c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~---~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~~Sl----~~ql~~~ 214 (255)
|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+......+.....+||||||+...+- ..+|.++
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~ 154 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK 154 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh
Confidence 999999999988999999999999742110 012357899998763333345789999999987532 2234455
Q ss_pred CCc-c--ceEEEecCCCCCeEEEECCCCC--CC----------CCeEEEECccC
Q 025272 215 KLI-R--NVVGHCLSGGGGGFLFFGDDLY--DS----------SRVVWTSMSSD 253 (255)
Q Consensus 215 g~i-~--~~FS~cL~~~~~G~l~fG~~~~--~~----------~~l~~tPli~~ 253 (255)
+.+ . ++||+||++ .+|+|+||++|. +. +++.|+|++.+
T Consensus 155 ~~~~~~~~~FS~~l~~-~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (326)
T cd06096 155 RPKLKKDKIFSICLSE-DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK 207 (326)
T ss_pred cccccCCceEEEEEcC-CCeEEEECccChhhhcccccccccccCCceEEeccCC
Confidence 444 3 899999986 479999999974 23 78999999854
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=99.97 E-value=8.3e-31 Score=237.17 Aligned_cols=164 Identities=22% Similarity=0.374 Sum_probs=135.8
Q ss_pred CeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCcee
Q 025272 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDY 144 (255)
Q Consensus 65 ~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~ 144 (255)
+.+|+++|.||||+|++.|++||||+++||+|. .|..|..+.++.|+|++|+. + ....|.|
T Consensus 8 ~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Sst-----------------~-~~~~~~~ 68 (317)
T cd05478 8 DMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSST-----------------Y-QSTGQPL 68 (317)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCcc-----------------e-eeCCcEE
Confidence 789999999999999999999999999999998 89854434578999988741 1 1146789
Q ss_pred eeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCC-CCCCcceEEeeCCCCCc------hHHHhhhcCCc
Q 025272 145 ELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA-SYHPLDGILGLGKGKSS------IVSQLHSQKLI 217 (255)
Q Consensus 145 ~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~-~~~~~dGIlGLg~~~~S------l~~ql~~~g~i 217 (255)
.+.|++|+ +.|.++.|+|+|+ +..++++.|||++...... .....+||||||++.++ +..||+++++|
T Consensus 69 ~~~yg~gs-~~G~~~~D~v~ig----~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i 143 (317)
T cd05478 69 SIQYGTGS-MTGILGYDTVQVG----GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLV 143 (317)
T ss_pred EEEECCce-EEEEEeeeEEEEC----CEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCC
Confidence 99999995 8999999999996 4567899999997652211 22458999999997653 78899999999
Q ss_pred -cceEEEecCCC--CCeEEEECCCCC--CCCCeEEEECcc
Q 025272 218 -RNVVGHCLSGG--GGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 218 -~~~FS~cL~~~--~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
+++||+||.+. .+|+|+||++|. +.++++|+|+..
T Consensus 144 ~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~ 183 (317)
T cd05478 144 SQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA 183 (317)
T ss_pred CCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC
Confidence 79999999864 479999999974 578999999975
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=99.97 E-value=1.7e-30 Score=235.69 Aligned_cols=163 Identities=23% Similarity=0.368 Sum_probs=134.0
Q ss_pred CCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCC----CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 025272 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV----RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDP 139 (255)
Q Consensus 64 ~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~----~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~ 139 (255)
.+.+|+++|.||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+. + ..
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~--~~~~y~~~~SsT-----------------~-~~ 61 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACW--LHHKYNSSKSST-----------------Y-VK 61 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCcccc--CcCcCCcccCcc-----------------e-ee
Confidence 4779999999999999999999999999999998 887 465 467899988741 1 11
Q ss_pred CCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc------hHHHhh
Q 025272 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLH 212 (255)
Q Consensus 140 ~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~S------l~~ql~ 212 (255)
..|.|.+.|++| ++.|.+++|+|+|+ +..++++.|||+++.... +.....+||||||++.+| ++.+|+
T Consensus 62 ~~~~~~i~Yg~G-~~~G~~~~D~v~~g----~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 136 (325)
T cd05490 62 NGTEFAIQYGSG-SLSGYLSQDTVSIG----GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIM 136 (325)
T ss_pred CCcEEEEEECCc-EEEEEEeeeEEEEC----CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHH
Confidence 357999999999 58999999999996 456789999999876321 223468999999998765 456899
Q ss_pred hcCCc-cceEEEecCCC----CCeEEEECCCCC--CCCCeEEEECcc
Q 025272 213 SQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 213 ~~g~i-~~~FS~cL~~~----~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
++++| +++||+||.+. .+|+|+||++|. +.+++.|+|+..
T Consensus 137 ~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~ 183 (325)
T cd05490 137 AQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR 183 (325)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc
Confidence 99999 89999999742 369999999875 678999999864
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=99.97 E-value=3.1e-30 Score=233.43 Aligned_cols=162 Identities=25% Similarity=0.464 Sum_probs=134.8
Q ss_pred CeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCc
Q 025272 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV--RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQC 142 (255)
Q Consensus 65 ~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~--~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c 142 (255)
+.+|+++|.||||||++.|++||||+++||+|. .|. .|. .++.|+|++|+ ++ ....|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~--~~~~f~~~~Ss-----------------T~-~~~~~ 59 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACT--NHTKFNPSQSS-----------------TY-STNGE 59 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCcccc--ccCCCCcccCC-----------------Cc-eECCc
Confidence 358999999999999999999999999999998 897 465 46899999885 11 12478
Q ss_pred eeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCC------CchHHHhhhcC
Q 025272 143 DYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGK------SSIVSQLHSQK 215 (255)
Q Consensus 143 ~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~------~Sl~~ql~~~g 215 (255)
.|++.|++| ++.|.+++|+|+|+ +..++++.|||++..... +.....+||||||+.. .+++.||.++|
T Consensus 60 ~~~~~Yg~G-s~~G~~~~D~i~~g----~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 60 TFSLQYGSG-SLTGIFGYDTVTVQ----GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred EEEEEECCc-EEEEEEEeeEEEEC----CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 999999999 57999999999996 467789999999875321 2235679999999864 46788999999
Q ss_pred Cc-cceEEEecCCC---CCeEEEECCCCC--CCCCeEEEECcc
Q 025272 216 LI-RNVVGHCLSGG---GGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 216 ~i-~~~FS~cL~~~---~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
.| +++||+||.+. .+|.|+||++|. +.++++|+||..
T Consensus 135 ~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~ 177 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS 177 (318)
T ss_pred CcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC
Confidence 99 89999999853 469999999974 678999999864
No 9
>PTZ00165 aspartyl protease; Provisional
Probab=99.97 E-value=2.6e-30 Score=245.84 Aligned_cols=179 Identities=22% Similarity=0.387 Sum_probs=138.9
Q ss_pred eEEeeecCCCCCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 025272 54 LLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH 133 (255)
Q Consensus 54 ~~~p~~~~~~~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~ 133 (255)
...|+.+ |.+.+|+++|+||||||+|.|+|||||+++||+|. .|..|..+.++.|+|++|+. +...
T Consensus 109 ~~~~l~n--~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SST------y~~~----- 174 (482)
T PTZ00165 109 LQQDLLN--FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSST------YTKL----- 174 (482)
T ss_pred cceeccc--ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccCC------cEec-----
Confidence 3455543 45889999999999999999999999999999998 89753223578999998851 1110
Q ss_pred CCCCCCCCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCC-------
Q 025272 134 HNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKS------- 205 (255)
Q Consensus 134 ~~C~~~~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~------- 205 (255)
+.......+.+.|++| +..|.+++|+|+|+ +..++++.|||++..... +...+.|||||||++.+
T Consensus 175 --~~~~~~~~~~i~YGsG-s~~G~l~~DtV~ig----~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 175 --KLGDESAETYIQYGTG-ECVLALGKDTVKIG----GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred --CCCCccceEEEEeCCC-cEEEEEEEEEEEEC----CEEEccEEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 0011122577999999 57899999999996 467899999999876322 33457899999999875
Q ss_pred --chHHHhhhcCCc-cceEEEecCC--CCCeEEEECCCCC--C--CCCeEEEECccC
Q 025272 206 --SIVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--D--SSRVVWTSMSSD 253 (255)
Q Consensus 206 --Sl~~ql~~~g~i-~~~FS~cL~~--~~~G~l~fG~~~~--~--~~~l~~tPli~~ 253 (255)
++..+|.++|+| +++||+||.+ ..+|+|+|||+|. + .+++.|+|++..
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~ 304 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST 304 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc
Confidence 356789999999 8999999975 3579999999985 3 468999999753
No 10
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=99.97 E-value=3.1e-30 Score=229.26 Aligned_cols=163 Identities=24% Similarity=0.344 Sum_probs=134.5
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceeeee
Q 025272 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELE 147 (255)
Q Consensus 68 Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~~~ 147 (255)
|+++|+||||+|++.|++||||+++||+|. .|..|..+.+..|+|++|+ +|.....|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Ss-----------------t~~~~~~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSS-----------------TAKLLPGATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCc-----------------cceecCCcEEEEE
Confidence 789999999999999999999999999999 8998877677889998874 1111136899999
Q ss_pred cCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc---------hHHHhhhcCCc
Q 025272 148 YADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS---------IVSQLHSQKLI 217 (255)
Q Consensus 148 Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~S---------l~~ql~~~g~i 217 (255)
|++|+.+.|.+++|+|+|+ +..++++.|||++..... ......+||||||+..++ +..+|.+++.
T Consensus 63 Y~~G~~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~- 137 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIG----GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD- 137 (278)
T ss_pred eCCCCeEEEEEEEEEEEEC----CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-
Confidence 9999779999999999996 456789999999876321 233579999999998654 4556777754
Q ss_pred cceEEEecCCCCCeEEEECCCCC--CCCCeEEEECccC
Q 025272 218 RNVVGHCLSGGGGGFLFFGDDLY--DSSRVVWTSMSSD 253 (255)
Q Consensus 218 ~~~FS~cL~~~~~G~l~fG~~~~--~~~~l~~tPli~~ 253 (255)
+++||+||.+...|+|+|||+|. +.++++|+|++.+
T Consensus 138 ~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~ 175 (278)
T cd06097 138 APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNS 175 (278)
T ss_pred CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCC
Confidence 88999999876689999999985 6789999999863
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=99.97 E-value=6.7e-30 Score=231.61 Aligned_cols=163 Identities=21% Similarity=0.384 Sum_probs=134.5
Q ss_pred CCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 025272 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV--RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQ 141 (255)
Q Consensus 64 ~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~--~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~ 141 (255)
.+.+|+++|.||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +| ....
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~--~~~~y~~~~Ss-----------------t~-~~~~ 65 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACF--LHSKYDSSASS-----------------TY-KANG 65 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccC--CcceECCCCCc-----------------ce-eeCC
Confidence 3779999999999999999999999999999999 897 475 45789998874 11 1246
Q ss_pred ceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCchH------HHhhhc
Q 025272 142 CDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSSIV------SQLHSQ 214 (255)
Q Consensus 142 c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~Sl~------~ql~~~ 214 (255)
|.|.+.|++| +++|.+++|+|+|+ +..++++.|||+...... +.....+||||||++.++.. .+|+++
T Consensus 66 ~~~~~~y~~g-~~~G~~~~D~v~ig----~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~q 140 (320)
T cd05488 66 TEFKIQYGSG-SLEGFVSQDTLSIG----DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQ 140 (320)
T ss_pred CEEEEEECCc-eEEEEEEEeEEEEC----CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhc
Confidence 8999999999 48999999999996 456789999999765221 22346799999999887643 478899
Q ss_pred CCc-cceEEEecCCC--CCeEEEECCCCC--CCCCeEEEECcc
Q 025272 215 KLI-RNVVGHCLSGG--GGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 215 g~i-~~~FS~cL~~~--~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
|+| +++||+||.+. .+|.|+||++|. +.++++|+|++.
T Consensus 141 g~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~ 183 (320)
T cd05488 141 GLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR 183 (320)
T ss_pred CCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc
Confidence 999 89999999863 579999999975 578999999975
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=99.97 E-value=8.2e-30 Score=230.88 Aligned_cols=164 Identities=22% Similarity=0.323 Sum_probs=134.6
Q ss_pred CCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCC---CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 025272 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV---RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPA 140 (255)
Q Consensus 64 ~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~---~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~ 140 (255)
.+.+|+++|.||||+|++.|+|||||+++||+|. .|. .|.. ++.|+|++|+. + ...
T Consensus 7 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~~--~~~y~~~~SsT-----------------~-~~~ 65 (317)
T cd06098 7 LDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACYF--HSKYKSSKSST-----------------Y-KKN 65 (317)
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCccccc--cCcCCcccCCC-----------------c-ccC
Confidence 4789999999999999999999999999999998 895 6873 67899998841 1 113
Q ss_pred CceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCch------HHHhhh
Q 025272 141 QCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSSI------VSQLHS 213 (255)
Q Consensus 141 ~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~Sl------~~ql~~ 213 (255)
.+.+.+.|++| .+.|.+++|+|+|+ ...++++.|||++..... +.....+||||||+..++. ..+|++
T Consensus 66 ~~~~~i~Yg~G-~~~G~~~~D~v~ig----~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 140 (317)
T cd06098 66 GTSASIQYGTG-SISGFFSQDSVTVG----DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVE 140 (317)
T ss_pred CCEEEEEcCCc-eEEEEEEeeEEEEC----CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHh
Confidence 45789999999 57999999999996 456789999999875222 2335789999999987653 458899
Q ss_pred cCCc-cceEEEecCCC----CCeEEEECCCCC--CCCCeEEEECccC
Q 025272 214 QKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSD 253 (255)
Q Consensus 214 ~g~i-~~~FS~cL~~~----~~G~l~fG~~~~--~~~~l~~tPli~~ 253 (255)
+|+| +++||+||.+. .+|.|+||++|. +.++++|+|++..
T Consensus 141 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~ 187 (317)
T cd06098 141 QGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK 187 (317)
T ss_pred cCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC
Confidence 9999 78999999742 479999999975 6789999999753
No 13
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=99.97 E-value=6.7e-30 Score=231.14 Aligned_cols=159 Identities=22% Similarity=0.375 Sum_probs=132.3
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceee
Q 025272 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV--RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (255)
Q Consensus 68 Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~--~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~ 145 (255)
|+++|+||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+ ++ ....|.|.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~--~~~~y~~~~Ss-----------------T~-~~~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACT--KHNRFQPSESS-----------------TY-VSNGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccC--ccceECCCCCc-----------------cc-ccCCcEEE
Confidence 899999999999999999999999999998 897 575 46889998874 11 12468999
Q ss_pred eecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc------hHHHhhhcCCc-
Q 025272 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLHSQKLI- 217 (255)
Q Consensus 146 ~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~S------l~~ql~~~g~i- 217 (255)
+.|++| .+.|.+++|+|+|+ +..++++.|||+...... +.....+||||||++.++ +..+|.++++|
T Consensus 60 i~Yg~g-~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 60 IQYGTG-SLTGIIGIDQVTVE----GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EEeCCc-EEEEEeeecEEEEC----CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 999999 58999999999996 456789999998765221 233578999999998765 46789999999
Q ss_pred cceEEEecCCC----CCeEEEECCCCC--CCCCeEEEECcc
Q 025272 218 RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 218 ~~~FS~cL~~~----~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
+++||+||.++ .+|+|+||++|. +.+++.|+|++.
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~ 175 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV 175 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC
Confidence 78999999852 479999999974 678999999875
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=99.97 E-value=1.5e-29 Score=238.94 Aligned_cols=172 Identities=19% Similarity=0.228 Sum_probs=136.7
Q ss_pred eEEeeecCCCCCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 025272 54 LLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH 133 (255)
Q Consensus 54 ~~~p~~~~~~~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~ 133 (255)
..+|+.+. .+.+|+++|+||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++|+
T Consensus 128 ~~v~L~n~--~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~Ss---------------- 188 (453)
T PTZ00147 128 DNVELKDL--ANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSK---------------- 188 (453)
T ss_pred Ceeecccc--CCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCc----------------
Confidence 45666443 4779999999999999999999999999999998 8974333357889998874
Q ss_pred CCCCCCCCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC---CCCCCcceEEeeCCCCCc----
Q 025272 134 HNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG---ASYHPLDGILGLGKGKSS---- 206 (255)
Q Consensus 134 ~~C~~~~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~---~~~~~~dGIlGLg~~~~S---- 206 (255)
+| ....|.|.+.|++| +++|.+++|+|+|+ +..++ ..|+|+...... ......|||||||++.+|
T Consensus 189 -T~-~~~~~~f~i~Yg~G-svsG~~~~DtVtiG----~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~ 260 (453)
T PTZ00147 189 -TY-EKDGTKVEMNYVSG-TVSGFFSKDLVTIG----NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSV 260 (453)
T ss_pred -ce-EECCCEEEEEeCCC-CEEEEEEEEEEEEC----CEEEE-EEEEEEEeccCcccccccccccceecccCCccccccC
Confidence 11 11467999999999 58999999999996 34455 578988764221 123468999999998765
Q ss_pred --hHHHhhhcCCc-cceEEEecCC--CCCeEEEECCCCC--CCCCeEEEECcc
Q 025272 207 --IVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 207 --l~~ql~~~g~i-~~~FS~cL~~--~~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
++.+|+.+++| +++||+||++ ...|.|+|||+|. +.+++.|+|+..
T Consensus 261 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~ 313 (453)
T PTZ00147 261 DPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH 313 (453)
T ss_pred CCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC
Confidence 45689999999 8899999985 3579999999985 578999999964
No 15
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=99.97 E-value=7.8e-30 Score=228.78 Aligned_cols=138 Identities=39% Similarity=0.716 Sum_probs=119.6
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceeee
Q 025272 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (255)
Q Consensus 67 ~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~~ 146 (255)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c-----------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC-----------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC-----------------------------------------Ceeee
Confidence 5999999999999999999999999999876 33 57899
Q ss_pred ecCCCceEeEEEEEEEEEEeecCCCc-CCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchHHHhhhcCCccceEEEec
Q 025272 147 EYADGGSSLGVLVKDAFAFNYTNGQR-LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCL 225 (255)
Q Consensus 147 ~Y~dgs~~~G~l~~Dtl~l~~~~g~~-~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~~Sl~~ql~~~g~i~~~FS~cL 225 (255)
.|++|+.++|.+++|+|+|+ +. .++++.|||+.... + .+...+||||||+..+|+++|+..+ .+++||+||
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig----~~~~~~~~~Fg~~~~~~-~-~~~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L 110 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLG----SSDVVPGFAFGCGHDNE-G-LFGGAAGLLGLGRGKLSLPSQTASS--YGGVFSYCL 110 (299)
T ss_pred EeCCCceEEEEEEEEEEEeC----CCCccCCEEEECCccCC-C-ccCCCCEEEECCCCcchHHHHhhHh--hcCceEEEc
Confidence 99999878999999999996 33 67899999998763 2 2337899999999999999998765 578999999
Q ss_pred CC---CCCeEEEECCCCCCCCCeEEEECccCC
Q 025272 226 SG---GGGGFLFFGDDLYDSSRVVWTSMSSDY 254 (255)
Q Consensus 226 ~~---~~~G~l~fG~~~~~~~~l~~tPli~~~ 254 (255)
.+ ..+|+|+||++|...+++.||||+.++
T Consensus 111 ~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~ 142 (299)
T cd05472 111 PDRSSSSSGYLSFGAAASVPAGASFTPMLSNP 142 (299)
T ss_pred cCCCCCCCceEEeCCccccCCCceECCCccCC
Confidence 85 457999999998767899999998763
No 16
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=99.97 E-value=3.1e-29 Score=228.29 Aligned_cols=163 Identities=21% Similarity=0.374 Sum_probs=134.7
Q ss_pred CCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCC----CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 025272 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV----RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDP 139 (255)
Q Consensus 64 ~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~----~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~ 139 (255)
.+.+|+++|.||||+|++.|++||||+++||+|. .|. .|. .++.|+|++|. +| ..
T Consensus 8 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~--~~~~y~~~~Ss-----------------t~-~~ 66 (329)
T cd05485 8 MDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACL--LHNKYDSTKSS-----------------TY-KK 66 (329)
T ss_pred cCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCcccc--CCCeECCcCCC-----------------Ce-EE
Confidence 4789999999999999999999999999999998 897 465 35789998874 11 11
Q ss_pred CCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCch------HHHhh
Q 025272 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSSI------VSQLH 212 (255)
Q Consensus 140 ~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~Sl------~~ql~ 212 (255)
..|.|.+.|++|+ +.|.+++|+|+|+ +..++++.|||+.+.... +.....+||||||++.+|. ..||.
T Consensus 67 ~~~~~~i~Y~~g~-~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~ 141 (329)
T cd05485 67 NGTEFAIQYGSGS-LSGFLSTDTVSVG----GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMV 141 (329)
T ss_pred CCeEEEEEECCce-EEEEEecCcEEEC----CEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHH
Confidence 4689999999995 8999999999996 456789999999775221 2235689999999987763 57899
Q ss_pred hcCCc-cceEEEecCCC----CCeEEEECCCCC--CCCCeEEEECcc
Q 025272 213 SQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 213 ~~g~i-~~~FS~cL~~~----~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
++++| +++||+||.+. .+|+|+||++|. +.++++|+|+..
T Consensus 142 ~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~ 188 (329)
T cd05485 142 NQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR 188 (329)
T ss_pred hCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC
Confidence 99999 88999999852 469999999974 578999999975
No 17
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.96 E-value=1.3e-28 Score=217.10 Aligned_cols=162 Identities=31% Similarity=0.515 Sum_probs=134.4
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCC--CCCCCCCCCCCCcccccCCCCCCCCCCCCCCceee
Q 025272 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPL--YRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (255)
Q Consensus 68 Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~--f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~ 145 (255)
|+++|.||||+|++.|++||||+++||+|. .|..|..+.... |++..|. .| ....|.|.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~-----------------~~-~~~~~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSS-----------------TY-KDTGCTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCc-----------------ee-ecCCCEEE
Confidence 789999999999999999999999999999 898776544333 3433221 12 23689999
Q ss_pred eecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCCCC------CchHHHhhhcCCc-c
Q 025272 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGK------SSIVSQLHSQKLI-R 218 (255)
Q Consensus 146 ~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~------~Sl~~ql~~~g~i-~ 218 (255)
+.|++| .+.|.+++|+|+|+. ..++++.|||++...........+||||||+.. .+++.||.+++.| +
T Consensus 62 ~~Y~~g-~~~g~~~~D~v~~~~----~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~ 136 (283)
T cd05471 62 ITYGDG-SVTGGLGTDTVTIGG----LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISS 136 (283)
T ss_pred EEECCC-eEEEEEEEeEEEECC----EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCC
Confidence 999998 789999999999963 447899999999874323456799999999998 7899999999988 9
Q ss_pred ceEEEecCCC----CCeEEEECCCCC--CCCCeEEEECccC
Q 025272 219 NVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSD 253 (255)
Q Consensus 219 ~~FS~cL~~~----~~G~l~fG~~~~--~~~~l~~tPli~~ 253 (255)
++||+||.+. ..|.|+||+++. +.+++.|+|++.+
T Consensus 137 ~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~ 177 (283)
T cd05471 137 PVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN 177 (283)
T ss_pred CEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC
Confidence 9999999963 689999999976 4789999999874
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.96 E-value=3.8e-29 Score=230.67 Aligned_cols=169 Identities=24% Similarity=0.407 Sum_probs=133.4
Q ss_pred ecCCCce-EEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCC---------CCCCCCCCce
Q 025272 74 IGQPARP-YFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH---------HNCEDPAQCD 143 (255)
Q Consensus 74 iGTP~q~-~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~---------~~C~~~~~c~ 143 (255)
+|||-.+ +.|++||||+++||+|. +|. ...|. .++|+++.|....+++. ..|. ++.|.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~------sst~~----~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~-~~~C~ 69 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH------SSTYQ----TVPCSSSVCSLANRYHCPGTCGGAPGPGCG-NNTCT 69 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC------cCCCC----ccCcCChhhccccccCCCccccCCCCCCCC-CCcCe
Confidence 6888888 99999999999999998 653 22444 38999999987664422 2563 35799
Q ss_pred eeee-cCCCceEeEEEEEEEEEEeecCCCc----CCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchHHHhhhcCCcc
Q 025272 144 YELE-YADGGSSLGVLVKDAFAFNYTNGQR----LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 218 (255)
Q Consensus 144 ~~~~-Y~dgs~~~G~l~~Dtl~l~~~~g~~----~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~~Sl~~ql~~~g~i~ 218 (255)
|... |++|+.+.|.|++|+|+|+.++|+. .++++.|||+++..........|||||||++++|+++||..++..+
T Consensus 70 y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~ 149 (362)
T cd05489 70 AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVA 149 (362)
T ss_pred eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCC
Confidence 8765 8899999999999999998765543 5789999999875211223458999999999999999998876568
Q ss_pred ceEEEecCC--CCCeEEEECCCCC--C------CCCeEEEECccCC
Q 025272 219 NVVGHCLSG--GGGGFLFFGDDLY--D------SSRVVWTSMSSDY 254 (255)
Q Consensus 219 ~~FS~cL~~--~~~G~l~fG~~~~--~------~~~l~~tPli~~~ 254 (255)
++|||||++ ..+|+|+||+.+. + .+.++||||+.++
T Consensus 150 ~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~ 195 (362)
T cd05489 150 RKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNP 195 (362)
T ss_pred cceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCC
Confidence 999999986 3579999998863 1 3689999999863
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=99.96 E-value=1.8e-28 Score=231.41 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=134.5
Q ss_pred EEeeecCCCCCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCC--CCCCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 025272 55 LFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV--RCVEAPHPLYRPSNDLVPCEDPICASLHAPG 132 (255)
Q Consensus 55 ~~p~~~~~~~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~--~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~ 132 (255)
.+|+.+ +.+.+|+++|.||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+
T Consensus 128 ~~~l~d--~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~--~~~~yd~s~Ss--------------- 187 (450)
T PTZ00013 128 VIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCS--IKNLYDSSKSK--------------- 187 (450)
T ss_pred ceeeec--cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccc--cCCCccCccCc---------------
Confidence 355543 23679999999999999999999999999999999 897 565 46789998874
Q ss_pred CCCCCCCCCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC---CCCCCcceEEeeCCCCCc---
Q 025272 133 HHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG---ASYHPLDGILGLGKGKSS--- 206 (255)
Q Consensus 133 ~~~C~~~~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~---~~~~~~dGIlGLg~~~~S--- 206 (255)
++ ....|.|.+.|++| ++.|.+++|+|+|+ ...++ ..|+++.+.... ......|||||||++.++
T Consensus 188 --T~-~~~~~~~~i~YG~G-sv~G~~~~Dtv~iG----~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 258 (450)
T PTZ00013 188 --SY-EKDGTKVDITYGSG-TVKGFFSKDLVTLG----HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGS 258 (450)
T ss_pred --cc-ccCCcEEEEEECCc-eEEEEEEEEEEEEC----CEEEc-cEEEEEEeccccccceecccccceecccCCcccccc
Confidence 11 12468999999999 58999999999996 34444 578888764211 122468999999998764
Q ss_pred ---hHHHhhhcCCc-cceEEEecCC--CCCeEEEECCCCC--CCCCeEEEECcc
Q 025272 207 ---IVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 207 ---l~~ql~~~g~i-~~~FS~cL~~--~~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
++.+|+++++| +++||+||++ ..+|.|+|||+|. +.++|+|+|+..
T Consensus 259 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~ 312 (450)
T PTZ00013 259 IDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH 312 (450)
T ss_pred CCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc
Confidence 56789999999 7899999985 3579999999985 578999999964
No 20
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=99.96 E-value=2.6e-28 Score=221.76 Aligned_cols=162 Identities=23% Similarity=0.361 Sum_probs=131.5
Q ss_pred CCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCC----CCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 025272 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVR----CVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDP 139 (255)
Q Consensus 64 ~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~----C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~ 139 (255)
.+.+|+++|+||||+|++.|++||||+++||+|. .|.. |. .++.|+|++|+ +| ..
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~--~~~~y~~~~Ss-----------------T~-~~ 63 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACV--THNLYDASDSS-----------------TY-KE 63 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhc--ccCcCCCCCCe-----------------ee-eE
Confidence 4789999999999999999999999999999987 7864 54 46789998874 11 12
Q ss_pred CCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc------hHHHhh
Q 025272 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLH 212 (255)
Q Consensus 140 ~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~~S------l~~ql~ 212 (255)
..|.|++.|++| .++|.+++|+|+|+. ..+ .+.|||+.+.... +.....|||||||++..+ +..+|+
T Consensus 64 ~~~~~~~~Yg~g-~~~G~~~~D~v~~g~----~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~ 137 (326)
T cd05487 64 NGTEFTIHYASG-TVKGFLSQDIVTVGG----IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIM 137 (326)
T ss_pred CCEEEEEEeCCc-eEEEEEeeeEEEECC----EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHH
Confidence 468999999999 589999999999962 333 4789999875221 223568999999997654 466899
Q ss_pred hcCCc-cceEEEecCCC----CCeEEEECCCCC--CCCCeEEEECcc
Q 025272 213 SQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 213 ~~g~i-~~~FS~cL~~~----~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
++|.| +++||+||.+. .+|.|+||++|. +.++++|+|+..
T Consensus 138 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~ 184 (326)
T cd05487 138 SQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK 184 (326)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc
Confidence 99999 89999999852 479999999975 678999999864
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=99.95 E-value=8.9e-28 Score=212.21 Aligned_cols=136 Identities=46% Similarity=0.792 Sum_probs=118.1
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceeee
Q 025272 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (255)
Q Consensus 67 ~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~~ 146 (255)
+|+++|+||||+|++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999964 36789
Q ss_pred ecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchHHHhhhcCCccceEEEecC
Q 025272 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLS 226 (255)
Q Consensus 147 ~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~~Sl~~ql~~~g~i~~~FS~cL~ 226 (255)
.|+||+.++|.+++|+|+|+..+ ..++++.|||+.+... ......+||||||+..+|++.||..++ ++||+||.
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g~~~--~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~l~ 109 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFGDSS--VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFSYCLV 109 (265)
T ss_pred EeCCCceeeeeEEEEEEEecCCC--CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeEEEcc
Confidence 99999899999999999997310 1678999999988643 345678999999999999999999886 89999998
Q ss_pred C----CCCeEEEECCCCC-CCCCeEEEECccC
Q 025272 227 G----GGGGFLFFGDDLY-DSSRVVWTSMSSD 253 (255)
Q Consensus 227 ~----~~~G~l~fG~~~~-~~~~l~~tPli~~ 253 (255)
+ ..+|+|+||++|. +.+++.|+||+.+
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~ 141 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGSGVVYTPLVKN 141 (265)
T ss_pred CCCCCCCCCeEEECCcccccCCCceEeecccC
Confidence 5 3579999999976 5789999999975
No 22
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=99.95 E-value=4.5e-27 Score=216.73 Aligned_cols=160 Identities=20% Similarity=0.197 Sum_probs=120.9
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceeee
Q 025272 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (255)
Q Consensus 67 ~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~~ 146 (255)
+|+++|.||||+|++.|+|||||+++||+|. +|.. .++.|+|++|+ ++ ....|.|.+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~----~~~~f~~~~Ss-----------------T~-~~~~~~~~i 59 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPF----IHTYFHRELSS-----------------TY-RDLGKGVTV 59 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCcc----ccccCCchhCc-----------------Cc-ccCCceEEE
Confidence 7999999999999999999999999999998 7743 35789998884 11 124689999
Q ss_pred ecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCC-CCCcceEEeeCCCCCc--------hHHHhhhcCCc
Q 025272 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGAS-YHPLDGILGLGKGKSS--------IVSQLHSQKLI 217 (255)
Q Consensus 147 ~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~~-~~~~dGIlGLg~~~~S--------l~~ql~~~g~i 217 (255)
.|++| ++.|.+++|+|+|+.. ......+.|+++......+. ....|||||||++.++ +..+|.+++.+
T Consensus 60 ~Yg~G-s~~G~~~~D~v~ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~ 136 (364)
T cd05473 60 PYTQG-SWEGELGTDLVSIPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI 136 (364)
T ss_pred EECcc-eEEEEEEEEEEEECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC
Confidence 99999 5799999999999631 11111233556554321111 2357999999998764 45688888878
Q ss_pred cceEEEecCC-----------CCCeEEEECCCCC--CCCCeEEEECcc
Q 025272 218 RNVVGHCLSG-----------GGGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 218 ~~~FS~cL~~-----------~~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
+++||++|.. ..+|+|+||++|. +.++|.|+||+.
T Consensus 137 ~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~ 184 (364)
T cd05473 137 PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE 184 (364)
T ss_pred ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc
Confidence 8899997731 1369999999974 678999999975
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=99.93 E-value=7.4e-25 Score=195.51 Aligned_cols=130 Identities=26% Similarity=0.428 Sum_probs=114.8
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceeee
Q 025272 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (255)
Q Consensus 67 ~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~~ 146 (255)
.|+++|.||||+|++.|++||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 69999999999999999999999999985 3678
Q ss_pred ecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCCCCC-----------chHHHhhhcC
Q 025272 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKS-----------SIVSQLHSQK 215 (255)
Q Consensus 147 ~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~~~~-----------Sl~~ql~~~g 215 (255)
.|++|+.+.|.+++|+|+|+ +..++++.|||+++. ...+||||||+.++ +++.||.++|
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g----~~~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIG----GATVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred EeccCCcEEEEEEEEEEEEC----CeEecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 89998799999999999996 346789999999874 24799999999887 6899999999
Q ss_pred Cc-cceEEEecCC--CCCeEEEECCCCC--CCCCeEEEECccC
Q 025272 216 LI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSD 253 (255)
Q Consensus 216 ~i-~~~FS~cL~~--~~~G~l~fG~~~~--~~~~l~~tPli~~ 253 (255)
+| +++||+||.+ ..+|.|+||++|. +.++++|+||+.+
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~ 147 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVND 147 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCc
Confidence 99 7999999996 3579999999874 5688999999876
No 24
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.92 E-value=1.6e-25 Score=200.73 Aligned_cols=162 Identities=30% Similarity=0.480 Sum_probs=129.2
Q ss_pred eEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCC-CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceee
Q 025272 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRC-VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (255)
Q Consensus 67 ~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C-~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~ 145 (255)
+|+++|.||||+|++.|++||||+++||++. .|..| .......|++.+|. +|. ...+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~-----------------t~~-~~~~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSS-----------------TFS-NQGKPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGST-----------------TEE-EEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccc-----------------ccc-cceeeee
Confidence 6999999999999999999999999999988 78766 22345778886653 111 1356799
Q ss_pred eecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCC-------CchHHHhhhcCCc
Q 025272 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGK-------SSIVSQLHSQKLI 217 (255)
Q Consensus 146 ~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGLg~~~-------~Sl~~ql~~~g~i 217 (255)
+.|++|+ ++|.+++|+|+|+ +..+.++.||.+...... ......+||||||+.. .+++.+|.++|+|
T Consensus 62 ~~y~~g~-~~G~~~~D~v~ig----~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i 136 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSIG----GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLI 136 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEET----TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSS
T ss_pred eeccCcc-cccccccceEeee----eccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccc
Confidence 9999995 9999999999995 466778999999885221 2346789999999753 4688899999999
Q ss_pred -cceEEEecCCC--CCeEEEECCCCC--CCCCeEEEECcc
Q 025272 218 -RNVVGHCLSGG--GGGFLFFGDDLY--DSSRVVWTSMSS 252 (255)
Q Consensus 218 -~~~FS~cL~~~--~~G~l~fG~~~~--~~~~l~~tPli~ 252 (255)
+++||++|.+. ..|.|+||++|. +.++++|+|++.
T Consensus 137 ~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~ 176 (317)
T PF00026_consen 137 SSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS 176 (317)
T ss_dssp SSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS
T ss_pred cccccceeeeecccccchheeeccccccccCceeccCccc
Confidence 89999999864 369999999975 578999999984
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=2.4e-22 Score=154.16 Aligned_cols=107 Identities=28% Similarity=0.472 Sum_probs=86.8
Q ss_pred EEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCC-CCCCCCCCCCCcccccCCCCCCCCCCCCCCceeeeec
Q 025272 70 VTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY-RPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEY 148 (255)
Q Consensus 70 ~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f-~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~~~Y 148 (255)
++|.||||+|++.|+|||||+++||+|. +|..|..+.++.| +|.+|. .+ ....|.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~ss-----------------t~-~~~~~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASS-----------------TY-SDNGCTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCC-----------------CC-CCCCcEEEEEe
Confidence 4789999999999999999999999999 8988776556666 887653 01 23579999999
Q ss_pred CCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEee
Q 025272 149 ADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGL 200 (255)
Q Consensus 149 ~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~-~~~~~~dGIlGL 200 (255)
++| .+.|.+++|+|+|+ ...++++.|||++..... ......+|||||
T Consensus 62 ~~g-~~~g~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTG-SLSGGLSTDTVSIG----DIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCC-eEEEEEEEEEEEEC----CEEECCEEEEEEEecCCccccccccccccCC
Confidence 999 57899999999996 355789999999987332 223578999998
No 26
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.54 E-value=0.0003 Score=51.56 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=60.2
Q ss_pred eeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCceee
Q 025272 66 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (255)
Q Consensus 66 ~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~C~~~~~c~~~ 145 (255)
+.|++++.|+ .+++.+++|||++.+|+.-. -...+. . + ........
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~-----~--~------------------------~~~~~~~~ 46 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLG-----L--P------------------------LTLGGKVT 46 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcC-----C--C------------------------ccCCCcEE
Confidence 3689999999 69999999999999998653 111110 0 0 00123456
Q ss_pred eecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCC
Q 025272 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGK 202 (255)
Q Consensus 146 ~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~ 202 (255)
+..++|.........+.++|+ +....++.+...... . . ..+||||+.+
T Consensus 47 ~~~~~G~~~~~~~~~~~i~ig----~~~~~~~~~~v~d~~-~---~-~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQIG----GITLRNVPAVVLPGD-A---L-GVDGLLGMDF 94 (96)
T ss_pred EEecCCCccceEEEcceEEEC----CcEEeccEEEEeCCc-c---c-CCceEeChHH
Confidence 677777656666668888885 344455555444332 1 1 5899999864
No 27
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.57 E-value=0.27 Score=38.37 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=59.7
Q ss_pred EeeecCCCCCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 025272 56 FQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHN 135 (255)
Q Consensus 56 ~p~~~~~~~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~~ 135 (255)
+++..+. +|.|++++.|. .+++.+++|||++.+-+.... -... ..++.
T Consensus 2 ~~i~~~~--~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~-A~~L------gl~~~--------------------- 49 (121)
T TIGR02281 2 VQLAKDG--DGHFYATGRVN--GRNVRFLVDTGATSVALNEED-AQRL------GLDLN--------------------- 49 (121)
T ss_pred EEEEEcC--CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHH-HHHc------CCCcc---------------------
Confidence 4454443 78999999997 479999999999998775430 0000 01110
Q ss_pred CCCCCCceeeeecCCCceEeEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCC
Q 025272 136 CEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGK 202 (255)
Q Consensus 136 C~~~~~c~~~~~Y~dgs~~~G~l~~Dtl~l~~~~g~~~~~~~~fGc~~~~~~~~~~~~~dGIlGLg~ 202 (255)
...-...+.=+.|........-|.+.++ .....++.+...... ...+|+||+.+
T Consensus 50 ---~~~~~~~~~ta~G~~~~~~~~l~~l~iG----~~~~~nv~~~v~~~~------~~~~~LLGm~f 103 (121)
T TIGR02281 50 ---RLGYTVTVSTANGQIKAARVTLDRVAIG----GIVVNDVDAMVAEGG------ALSESLLGMSF 103 (121)
T ss_pred ---cCCceEEEEeCCCcEEEEEEEeCEEEEC----CEEEeCcEEEEeCCC------cCCceEcCHHH
Confidence 0011233333456444455678888885 455566665554321 12379999754
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=92.12 E-value=1.4 Score=31.34 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=18.8
Q ss_pred EEEecCCCceEEEEEeCCCCceeEec
Q 025272 71 TMYIGQPARPYFLDLDTGSDLTWLQC 96 (255)
Q Consensus 71 ~i~iGTP~q~~~lilDTGS~~~Wv~c 96 (255)
++.|+ .+++.+++|||++.+.+.-
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~ 25 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISR 25 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECH
Confidence 45665 4799999999999877753
No 29
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=87.68 E-value=0.65 Score=33.90 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=23.4
Q ss_pred EEEEEEecCCCceEEEEEeCCCCceeEecC
Q 025272 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 68 Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~ 97 (255)
|++++.|+ .+++.+.+||||+..++.-.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 46788887 58999999999999998654
No 30
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=80.43 E-value=3.3 Score=28.98 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.8
Q ss_pred CeeEEEEEEecCCCceEEEEEeCCCCceeEecC
Q 025272 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 65 ~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~ 97 (255)
.+.+++.+.||. +.+.+++|||++...|+-+
T Consensus 6 ~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 578999999995 9999999999998877644
No 31
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=73.30 E-value=5.5 Score=29.18 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEecCCCceEEEEEeCCCCceeEecC
Q 025272 69 NVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 69 ~~~i~iGTP~q~~~lilDTGS~~~Wv~c~ 97 (255)
+.+|.+. .+++.+++|||++.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 3455555 46999999999999888643
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=72.65 E-value=6.4 Score=30.52 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=26.0
Q ss_pred CeeEEEEEEecCCCceEEEEEeCCCCceeEecC
Q 025272 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 65 ~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~ 97 (255)
...+++++.|+ .+++.+++|||++..++.-.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 45789999998 57899999999999988643
No 33
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=57.57 E-value=15 Score=27.03 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEecCCCceEEEEEeCCCCceeEec
Q 025272 71 TMYIGQPARPYFLDLDTGSDLTWLQC 96 (255)
Q Consensus 71 ~i~iGTP~q~~~lilDTGS~~~Wv~c 96 (255)
.+.|+ .|.+.+.+|||.+++-+.-
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcc
Confidence 34555 6899999999999998864
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=54.08 E-value=31 Score=29.63 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=50.4
Q ss_pred EEeeecCCCCCeeEEEEEEecCCCceEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 025272 55 LFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHH 134 (255)
Q Consensus 55 ~~p~~~~~~~~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~~~C~~C~~~~~~~f~p~~S~v~C~s~~C~~~~~~~~~ 134 (255)
++-+.++. +|.|.++..|- .|++.+++|||-+.+-++-. .-. .--++.++
T Consensus 95 ~v~Lak~~--~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-dA~------RlGid~~~------------------- 144 (215)
T COG3577 95 EVSLAKSR--DGHFEANGRVN--GKKVDFLVDTGATSVALNEE-DAR------RLGIDLNS------------------- 144 (215)
T ss_pred EEEEEecC--CCcEEEEEEEC--CEEEEEEEecCcceeecCHH-HHH------HhCCCccc-------------------
Confidence 44455543 89999999997 69999999999988777532 100 11233321
Q ss_pred CCCCCCCceeeeecCCCceEeEEEEEEEEEEe
Q 025272 135 NCEDPAQCDYELEYADGGSSLGVLVKDAFAFN 166 (255)
Q Consensus 135 ~C~~~~~c~~~~~Y~dgs~~~G~l~~Dtl~l~ 166 (255)
..-++.+.=+.|....-..--|.|.|+
T Consensus 145 -----l~y~~~v~TANG~~~AA~V~Ld~v~IG 171 (215)
T COG3577 145 -----LDYTITVSTANGRARAAPVTLDRVQIG 171 (215)
T ss_pred -----cCCceEEEccCCccccceEEeeeEEEc
Confidence 123455556778656667888888886
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=53.52 E-value=17 Score=26.10 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.9
Q ss_pred CceEEEEEeCCCCceeEecC
Q 025272 78 ARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 78 ~q~~~lilDTGS~~~Wv~c~ 97 (255)
.+++.+++|||.+.+-+.-.
T Consensus 7 G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 7 GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred CEEEEEEEECCCCeEEECHH
Confidence 57899999999999888643
No 36
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=41.48 E-value=3.7 Score=29.44 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=16.2
Q ss_pred ccCcCCCCCcceeecCCccc
Q 025272 6 FPFGSTLPSEAFVRLPDRSF 25 (255)
Q Consensus 6 ~~~~~~~~~~~~~~~~~r~~ 25 (255)
|=+|||++|||+..++.|..
T Consensus 57 yFI~STlsSNAIA~ti~~~~ 76 (78)
T PF09882_consen 57 YFIGSTLSSNAIAYTIARLK 76 (78)
T ss_pred HHHhhhchhhHHHHHHHhhc
Confidence 44689999999998877654
No 37
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=39.63 E-value=42 Score=27.88 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEecCCCceEEEEEeCCCCceeEecC
Q 025272 70 VTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 70 ~~i~iGTP~q~~~lilDTGS~~~Wv~c~ 97 (255)
..+.+++-..++.++|||||....+...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3444445567899999999999887654
No 38
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=30.44 E-value=89 Score=24.51 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=21.7
Q ss_pred CeeEEEEEEecCCCceEEEEEeCCCCceeEecC
Q 025272 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 65 ~~~Y~~~i~iGTP~q~~~lilDTGS~~~Wv~c~ 97 (255)
...++++++|+ .+++++.+|||...+-+.-+
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 45789999998 58999999999998888643
No 39
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=28.60 E-value=50 Score=29.14 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.4
Q ss_pred EEEEEeCCCCceeEecC
Q 025272 81 YFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 81 ~~lilDTGS~~~Wv~c~ 97 (255)
..+++|||++++++|-.
T Consensus 172 ~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 172 GGVIIDSGTVITRLPPS 188 (299)
T ss_pred CCeEEeCCCcceecCHH
Confidence 36899999999999853
No 40
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=26.24 E-value=73 Score=27.81 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=22.5
Q ss_pred eeEEEE---EEecC---CCceEEEEEeCCCCceeEecC
Q 025272 66 GYYNVT---MYIGQ---PARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 66 ~~Y~~~---i~iGT---P~q~~~lilDTGS~~~Wv~c~ 97 (255)
..|.++ |+||. +.....+++|||++++.+|-.
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456544 57763 233467999999999999754
No 41
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=21.88 E-value=1.2e+02 Score=22.82 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=16.6
Q ss_pred EEEEecCCC----ceEEEEEeCCCCce
Q 025272 70 VTMYIGQPA----RPYFLDLDTGSDLT 92 (255)
Q Consensus 70 ~~i~iGTP~----q~~~lilDTGS~~~ 92 (255)
+++.+..|. -++.+++|||.+..
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~ 28 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGF 28 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeE
Confidence 456676662 36789999998864
No 42
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=20.73 E-value=75 Score=27.74 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=21.9
Q ss_pred eeEEEE---EEecC----CCceEEEEEeCCCCceeEecC
Q 025272 66 GYYNVT---MYIGQ----PARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 66 ~~Y~~~---i~iGT----P~q~~~lilDTGS~~~Wv~c~ 97 (255)
+.|.++ |.||. ......+++|||++.+++|-.
T Consensus 177 ~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 177 GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 345444 45653 235667999999999999854
No 43
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=20.23 E-value=80 Score=28.37 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=22.2
Q ss_pred eeEEEE---EEecCC------CceEEEEEeCCCCceeEecC
Q 025272 66 GYYNVT---MYIGQP------ARPYFLDLDTGSDLTWLQCD 97 (255)
Q Consensus 66 ~~Y~~~---i~iGTP------~q~~~lilDTGS~~~Wv~c~ 97 (255)
..|.+. |+||.. .....+++|||++++++|-.
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 355544 567743 24456899999999999754
Done!