BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025274
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2
SV=1
Length = 329
Score = 290 bits (743), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 138/216 (63%), Positives = 168/216 (77%), Gaps = 3/216 (1%)
Query: 15 EVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGG 74
E+ K +G+E+VVLR R A+I L+GGQ SW+ + GEELLF S+KAIFKPP A+RGG
Sbjct: 25 ELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGG 84
Query: 75 IPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWP 134
IPIC PQFG G+LEQHGFARNR W ID++PPPL P + K +VDL+L+P+EEDLKIWP
Sbjct: 85 IPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPL-PVNPAIKAFVDLILRPAEEDLKIWP 143
Query: 135 HSFEFRLRVSLAADGNLALISRIRNINC--KPFSFSIAYHTYFAISDISEVRIEGLETLD 192
HSFEFRLRV+L G+L+L SRIRN N +PFS++ AYHTYF +SDISEVR+EGLET+D
Sbjct: 144 HSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETMD 203
Query: 193 YLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIA 228
YLDNL +ERFTEQGDA+ FESEV + IA
Sbjct: 204 YLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIA 239
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1
Length = 297
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 32/225 (14%)
Query: 24 EQVVLRNPRGASAKISL--HGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQ 81
++VVL +P + + + +G SW+ + EE L+ ST A VRGGIP+ FP
Sbjct: 8 KEVVLTHPADETTSVHILKYGATVYSWKL-KSEEQLWLSTAAKLDGSKPVRGGIPLVFPV 66
Query: 82 FGNRGS------LEQHGFARNRSW----VIDDNPPPLKPSDSQGKVYVDLLLKP---SEE 128
FG + L QHG ARN +W +NPP V LKP + E
Sbjct: 67 FGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPPT-----------VQFGLKPEIANPE 115
Query: 129 DLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGL 188
K+WP + L V L +D I + K F+ +HTYF I DI + L
Sbjct: 116 LTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNL 175
Query: 189 ETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQKFAF 233
+ D L +E + ++ +TF E + I++N++ + A
Sbjct: 176 AGMKLYDQLL-KESYVDKHPVVTFNQETDV----IYQNVSAERAI 215
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli
(strain K12) GN=yeaD PE=1 SV=2
Length = 294
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 15/168 (8%)
Query: 23 IEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQF 82
++ +V+ +P+ A +L G LSW+ EE+L+ S FK A+RGG+P+C+P F
Sbjct: 26 LDLIVVDHPQ-VKASFALQGAHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWF 84
Query: 83 G--NRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFR 140
G + L HGFARN W + + D+ G V + L SEE K WPH F
Sbjct: 85 GPAAQQGLPAHGFARNLPWTLKSH-----HEDADG-VALTFELTQSEETKKFWPHDFTLL 138
Query: 141 LRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGL 188
+ + L S F + A HTYF + DI++V + GL
Sbjct: 139 AHFRVGKTCEIDLESH------GEFETTSALHTYFNVGDIAKVSVSGL 180
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317
PE=3 SV=1
Length = 271
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 40/145 (27%)
Query: 54 EELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDS 113
+++L+ S FK +A+RGG+PIC+P FG HG AR R W +
Sbjct: 53 QDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVKQ-PAHGTARIRLWQLS----------- 100
Query: 114 QGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNL--ALISRIRNINCKPFSFS--- 168
Y+ + + RL L +D N+ A +S + C +F+
Sbjct: 101 --HYYISV---------------HKVRLEFELFSDLNIIEAKVSMVFTDKCH-LTFTHYG 142
Query: 169 -----IAYHTYFAISDISEVRIEGL 188
A HTYF I DI++V ++GL
Sbjct: 143 EESAQAALHTYFNIGDINQVEVQGL 167
>sp|P36747|VL2_HPV10 Minor capsid protein L2 OS=Human papillomavirus type 10 GN=L2 PE=3
SV=1
Length = 470
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 107 PLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEF-----RLRVS-LAADGNLAL 153
PL P+D+ VY+D D +WP +F F R RVS ADG LAL
Sbjct: 424 PLSPADTTHYVYID------GGDFYLWPVTFHFSRHRRRKRVSYFFADGTLAL 470
>sp|O09175|AMPB_RAT Aminopeptidase B OS=Rattus norvegicus GN=Rnpep PE=1 SV=2
Length = 650
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 79 FPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHS 136
FP+ +G GF NR W+ PP P S G D L+KP+EE ++W S
Sbjct: 463 FPELKKKGVDSIPGFEFNR-WLNTPGWPPYLPDLSPG----DSLMKPAEELAELWAAS 515
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,058,119
Number of Sequences: 539616
Number of extensions: 3752594
Number of successful extensions: 7462
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7450
Number of HSP's gapped (non-prelim): 10
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)