Query 025274
Match_columns 255
No_of_seqs 195 out of 1490
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:11:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 1.2E-56 2.6E-61 387.9 22.3 226 1-230 1-226 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 5.7E-47 1.2E-51 338.5 21.9 195 26-229 2-199 (269)
3 COG0676 Uncharacterized enzyme 100.0 2.3E-43 5E-48 309.6 16.8 196 13-228 15-212 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 2.6E-36 5.7E-41 269.8 18.2 188 24-224 2-202 (271)
5 cd09024 Aldose_epim_lacX Aldos 100.0 6E-30 1.3E-34 230.5 17.1 138 26-181 1-150 (288)
6 PF01263 Aldose_epim: Aldose 1 100.0 1.8E-28 3.8E-33 220.4 14.3 158 24-193 1-182 (300)
7 cd09021 Aldose_epim_Ec_YphB al 99.9 2.2E-26 4.7E-31 205.6 17.3 135 37-188 4-159 (273)
8 cd01081 Aldose_epim aldose 1-e 99.9 2.3E-26 4.9E-31 204.3 16.9 145 35-189 2-166 (284)
9 cd09022 Aldose_epim_Ec_YihR Al 99.9 8.3E-23 1.8E-27 183.5 16.4 133 35-185 2-156 (284)
10 PRK15172 putative aldose-1-epi 99.9 2.6E-22 5.6E-27 182.1 18.3 146 23-186 10-177 (300)
11 COG2017 GalM Galactose mutarot 99.9 1.8E-21 3.8E-26 177.3 15.7 147 20-181 9-175 (308)
12 cd09019 galactose_mutarotase_l 99.8 2.6E-20 5.6E-25 170.8 15.8 138 26-179 2-166 (326)
13 PLN00194 aldose 1-epimerase; P 99.8 2.2E-18 4.7E-23 158.9 18.1 146 22-179 8-179 (337)
14 TIGR02636 galM_Leloir galactos 99.8 1.3E-17 2.9E-22 153.5 16.5 143 22-179 3-171 (335)
15 PRK11055 galM galactose-1-epim 99.7 1.5E-16 3.3E-21 146.9 17.8 143 22-179 8-176 (342)
16 PTZ00485 aldolase 1-epimerase; 99.6 7.3E-15 1.6E-19 137.0 16.6 148 20-179 10-191 (376)
17 cd09023 Aldose_epim_Ec_c4013 A 99.4 3.3E-12 7.2E-17 115.1 12.2 136 37-179 4-156 (284)
18 KOG1604 Predicted mutarotase [ 99.2 2.7E-10 5.8E-15 103.1 13.4 142 20-179 17-190 (353)
19 cd09269 deoxyribose_mutarotase 98.5 4.7E-07 1E-11 82.2 8.0 86 87-178 61-147 (293)
20 PF14486 DUF4432: Domain of un 98.2 9.6E-06 2.1E-10 74.0 8.9 150 21-178 2-170 (302)
21 PF14315 DUF4380: Domain of un 97.4 0.008 1.7E-07 54.0 15.5 128 24-170 5-145 (274)
22 TIGR03593 yidC_nterm membrane 92.9 2.5 5.4E-05 39.3 12.9 119 24-167 74-204 (366)
23 PF14849 YidC_periplas: YidC p 92.9 2.2 4.7E-05 37.6 12.0 122 26-168 2-132 (270)
24 PRK01318 membrane protein inse 89.0 17 0.00037 35.8 14.9 122 25-168 40-171 (521)
25 PF09095 DUF1926: Domain of un 82.5 37 0.0008 30.6 13.0 137 19-174 3-185 (278)
26 COG0832 UreB Urea amidohydrola 80.1 2.4 5.2E-05 32.4 3.4 31 142-175 12-42 (106)
27 PF00699 Urease_beta: Urease b 75.1 3.9 8.4E-05 31.2 3.3 31 143-176 12-42 (100)
28 TIGR00192 urease_beta urease, 74.9 4.6 0.0001 30.9 3.7 30 143-175 13-42 (101)
29 cd00407 Urease_beta Urease bet 74.1 4.7 0.0001 30.9 3.6 30 143-175 13-42 (101)
30 PRK13203 ureB urease subunit b 74.1 4.8 0.0001 30.9 3.6 30 143-175 13-42 (102)
31 PRK13202 ureB urease subunit b 70.9 6.6 0.00014 30.2 3.7 30 143-175 13-43 (104)
32 PRK13201 ureB urease subunit b 68.9 6.9 0.00015 31.4 3.6 30 143-175 13-42 (136)
33 PRK13205 ureB urease subunit b 67.9 7.2 0.00016 32.0 3.6 30 143-175 13-42 (162)
34 PRK13198 ureB urease subunit b 66.9 7.8 0.00017 31.8 3.6 31 142-175 40-70 (158)
35 PRK13204 ureB urease subunit b 66.8 7.9 0.00017 31.8 3.6 31 142-175 35-65 (159)
36 PF05506 DUF756: Domain of unk 65.3 17 0.00037 26.6 5.0 40 133-175 5-44 (89)
37 PF12690 BsuPI: Intracellular 57.8 15 0.00033 26.8 3.5 36 150-191 1-36 (82)
38 PRK13192 bifunctional urease s 54.5 15 0.00033 31.7 3.4 41 132-175 110-151 (208)
39 PF04744 Monooxygenase_B: Mono 52.8 18 0.0004 34.0 3.9 29 139-168 254-282 (381)
40 PRK13986 urease subunit alpha; 52.3 16 0.00035 31.8 3.3 31 142-175 117-147 (225)
41 TIGR03079 CH4_NH3mon_ox_B meth 48.9 22 0.00047 33.5 3.8 27 141-168 275-301 (399)
42 COG2835 Uncharacterized conser 42.9 10 0.00022 26.3 0.5 24 55-81 25-48 (60)
43 PRK05089 cytochrome C oxidase 40.6 1.5E+02 0.0032 25.3 7.3 52 116-169 62-114 (188)
44 PF14742 GDE_N_bis: N-terminal 36.5 2.6E+02 0.0056 23.5 8.4 52 132-188 76-128 (194)
45 PF02929 Bgal_small_N: Beta ga 36.5 3.1E+02 0.0067 24.4 10.3 151 28-197 2-158 (276)
46 PF06165 Glyco_transf_36: Glyc 34.7 1.3E+02 0.0028 22.9 5.6 33 137-169 50-83 (110)
47 PF06030 DUF916: Bacterial pro 34.0 99 0.0021 24.2 4.9 32 146-177 24-55 (121)
48 PTZ00128 cytochrome c oxidase 31.4 2.4E+02 0.0052 24.9 7.3 53 116-170 106-159 (232)
49 PF04442 CtaG_Cox11: Cytochrom 30.6 1.5E+02 0.0032 24.5 5.5 51 116-168 35-86 (152)
50 PF00207 A2M: Alpha-2-macroglo 30.2 1.6E+02 0.0034 21.4 5.3 36 134-169 55-90 (92)
51 PRK11827 hypothetical protein; 28.3 23 0.00049 24.6 0.4 15 69-83 36-50 (60)
52 PF11611 DUF4352: Domain of un 24.6 94 0.002 23.4 3.3 21 150-170 37-57 (123)
53 PF07610 DUF1573: Protein of u 23.4 76 0.0017 20.1 2.2 14 155-168 2-15 (45)
54 PF00942 CBM_3: Cellulose bind 22.9 1.1E+02 0.0024 22.1 3.2 33 149-181 13-46 (86)
55 PF00345 PapD_N: Pili and flag 21.9 1.9E+02 0.0042 21.9 4.6 28 143-171 9-36 (122)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-56 Score=387.93 Aligned_cols=226 Identities=65% Similarity=1.066 Sum_probs=210.8
Q ss_pred CCCCCCCCCCcceEEEEecCCCeeEEEEECCCceEEEEecCCcEEEEEEeCCCeEEEecCCccccCCCCcccCCcceecc
Q 025274 1 MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP 80 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~~g~e~L~~~~~a~~~~~~~irgGiPv~fP 80 (255)
|+++..-+..+..+++.++.+|++.|.|+++.+.+|+|+++||+|+||+...|+|.||+|..|.+++.||||||||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FP 80 (305)
T KOG1594|consen 1 MGRSSAMASERMPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFP 80 (305)
T ss_pred CccccccccccccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEee
Confidence 66666667777889999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ccCCCCCCCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeC
Q 025274 81 QFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNI 160 (255)
Q Consensus 81 ~fg~~~~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~ 160 (255)
+||..+.+++|||||++.|+++....+.| ..+...|.|.|.+++++++.|||+|++++++.|.+ +.|+++..|+|+
T Consensus 81 QFG~~g~l~qHGFaRn~~W~v~~~p~~lp---~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt 156 (305)
T KOG1594|consen 81 QFGNFGSLPQHGFARNRFWEVENNPPPLP---SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT 156 (305)
T ss_pred ccCCCCcccccccccceeeEeccCCCCCC---cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC
Confidence 99999999999999999999998865443 22468999999999999999999999999999996 789999999999
Q ss_pred CCCeEEEeeeccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCccEEEccCCCeEEEE
Q 025274 161 NCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQK 230 (255)
Q Consensus 161 g~~~~pf~~g~HpYF~v~d~~~~~v~gl~g~~y~D~~~~~~~~~~~~~~l~f~~~~Drvy~~~~~~~~~~ 230 (255)
+++||.|++++||||+|+|+..++|+||+|+.|+|++.++++++++.++|+|.+++||||+++|+++.+-
T Consensus 157 d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~ 226 (305)
T KOG1594|consen 157 DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIF 226 (305)
T ss_pred CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEE
Confidence 9999999999999999999999999999999999999888889999999999999999999999887753
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=5.7e-47 Score=338.53 Aligned_cols=195 Identities=45% Similarity=0.794 Sum_probs=173.5
Q ss_pred EEEECCCceEEEEecCCcEEEEEEeCCCeEEEecCCccccCCCCcccCCcceeccccCCCC---CCCCceeecccCeEEE
Q 025274 26 VVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG---SLEQHGFARNRSWVID 102 (255)
Q Consensus 26 v~L~~~~~~~a~V~~~GA~v~s~~~~~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~---~~~~HGfaR~~~W~v~ 102 (255)
++|+|+ +.+|+|+++||+|+||++.++.|+||+++.+.|+++++||||+|+||||||+.. .+++|||||+.+|+|+
T Consensus 2 i~i~~~-~~~a~i~~~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~ 80 (269)
T cd09020 2 IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELL 80 (269)
T ss_pred EEEeCC-CceEEEECCCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEe
Confidence 678888 589999999999999998767999999999999999999999999999999876 6899999999999998
Q ss_pred ecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccccCCCcce
Q 025274 103 DNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISE 182 (255)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF~v~d~~~ 182 (255)
+.. ++++...++|.+.++++++++|||+|+++++|+|.+ ++|+++++|+|+|+++|||+.|+||||+++|+++
T Consensus 81 ~~~------~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~-~~L~~~l~v~N~g~~~~p~~~g~HpYf~v~d~~~ 153 (269)
T cd09020 81 EVS------EDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGF-DTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQ 153 (269)
T ss_pred eee------cCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcC-CcEEEEEEEECCCCCCeEehhccCeeEecCCccc
Confidence 875 222367889999888888999999999999999987 7899999999999999999999999999999999
Q ss_pred eEEecCCCCccccccccccceeecCCeEEecCCccEEEccCCCeEEE
Q 025274 183 VRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIAQ 229 (255)
Q Consensus 183 ~~v~gl~g~~y~D~~~~~~~~~~~~~~l~f~~~~Drvy~~~~~~~~~ 229 (255)
++|.||+|+.|+|++.+... ..+.+.+.|.+++||||...+..+.+
T Consensus 154 ~~v~gl~~~~y~d~~~~~~~-~~~~~~~~~~~~~Drvy~~~~~~~~i 199 (269)
T cd09020 154 VRVEGLEGATYLDKLTDQRE-KVQGGAVTFDGEVDRVYLNTPAPLTI 199 (269)
T ss_pred cEEeCCCCCceEEcCCCccc-cccCCceEECCccceEEeCCCCCEEE
Confidence 99999999999999865433 23457899999999999988755444
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=309.58 Aligned_cols=196 Identities=34% Similarity=0.552 Sum_probs=166.4
Q ss_pred eEEEEecCCCeeEEEEECCCceEEEEecCCcEEEEEEeCCCeEEEecCCccccCCCCcccCCcceeccccCCCCC--CCC
Q 025274 13 AVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGS--LEQ 90 (255)
Q Consensus 13 ~~~~~~~~~gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~~--~~~ 90 (255)
.+..++ .+.++.+.+.++. .+|.|+++||+|+||++.++.|+||+|+.+.|+.+++|||||||||||||+... +|+
T Consensus 15 ~~~~~~-~~~~~~~~~~h~~-~~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~Pa 92 (287)
T COG0676 15 ELSLVK-LDQLPLIVVDHPL-GSAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPA 92 (287)
T ss_pred cceeEe-eeccCceEeeccc-ceeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCCc
Confidence 344444 6778899999985 899999999999999998788999999999999999999999999999999865 699
Q ss_pred ceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeee
Q 025274 91 HGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIA 170 (255)
Q Consensus 91 HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g 170 (255)
|||||+++|++.+.. .+++...++|.|..+++ ||.|.+++++++++ .|+++++.+|..+ |+.|
T Consensus 93 HG~AR~~~W~l~~~~------~~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~g~--~le~~l~~~~~~s----~~~A 155 (287)
T COG0676 93 HGFARNRPWKLLEHD------EDEDGVRVTFGLDLEDE-----PHDFTLRLTFRFGE--TLELELESYGEES----FQAA 155 (287)
T ss_pred cchhhcCceeeeehh------cccCceEEEEEeCCCcc-----ccceEEEEEeeccc--eEEEEEEecChhH----HHHh
Confidence 999999999999986 34457889999987654 99999999999975 5999999888876 9999
Q ss_pred ccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCccEEEccCCCeEE
Q 025274 171 YHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIHRNIA 228 (255)
Q Consensus 171 ~HpYF~v~d~~~~~v~gl~g~~y~D~~~~~~~~~~~~~~l~f~~~~Drvy~~~~~~~~ 228 (255)
|||||+|+|++++.|+||+|..|.+.+... ....+.+.++|.+++||||+..+..++
T Consensus 156 lHtYF~VgDi~qv~V~GL~~~~~~~~~~~~-~~v~~~g~~~~~~~~DriY~~~~~~~~ 212 (287)
T COG0676 156 LHTYFRVGDIEQVEVSGLGGVCIDKVLNAE-EEVTQHGIVTFPGETDRIYLNPEPCSV 212 (287)
T ss_pred hcceEEecchhheEeccCCceehhhhhhce-eeccCCCceeeCCCccEEEEcCCCceE
Confidence 999999999999999999987776655433 333345679999999999999754443
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.6e-36 Score=269.80 Aligned_cols=188 Identities=30% Similarity=0.540 Sum_probs=158.1
Q ss_pred eEEEEECCC-ceEEE-EecCCcEEEEEEeCCCeEEEecCCccccCCCCcccCCcceeccccCCCC-----------CCCC
Q 025274 24 EQVVLRNPR-GASAK-ISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----------SLEQ 90 (255)
Q Consensus 24 ~~v~L~~~~-~~~a~-V~~~GA~v~s~~~~~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~-----------~~~~ 90 (255)
+.++|+++. +++++ ++.+||+|+||+.. |.|+||+++.+.++.++++|||+|+|||||||.. .+++
T Consensus 2 ~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~~-g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp~ 80 (271)
T cd09025 2 PTYELSDEEAGSRLRVVPERGGLITRWTVQ-GRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLKQ 80 (271)
T ss_pred cEEEEEcCCCceEEEEecccCCEEEEEecC-CEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEeccC
Confidence 567888875 35664 56899999999974 6899999999999999999999999999999864 4689
Q ss_pred ceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeee
Q 025274 91 HGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIA 170 (255)
Q Consensus 91 HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g 170 (255)
|||+|+.+|++++.. +...++|++.+++.++++|||+|+++++|+|.+ ++|+++++|+|+|+++|||++|
T Consensus 81 HGf~r~~~W~v~~~~---------~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~g 150 (271)
T cd09025 81 HGFARDLPWEVELLG---------DGAGLTLTLRDNEATRAVYPFDFELELTYRLAG-NTLEIAQRVHNLGDQPMPFSFG 150 (271)
T ss_pred cccccCCCEEEEecC---------CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeC-CEEEEEEEEEECCCCcEEEEEe
Confidence 999999999998753 145789999887777889999999999999987 7899999999999999999999
Q ss_pred ccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCccEEEccCC
Q 025274 171 YHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEVTLFSMCIH 224 (255)
Q Consensus 171 ~HpYF~v~d~~~~~v~gl~g~~y~D~~~~~~~~~~~~~~l~f~~~~Drvy~~~~ 224 (255)
+||||++++++++.|+++. ..|+|+..+..... ..+...+.+++|++|...+
T Consensus 151 ~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~D~~y~~~~ 202 (271)
T cd09025 151 FHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEANT-PGQFDETEEGVDLLFRPLG 202 (271)
T ss_pred cCceeeCCchhccEEEcCH-HHHhhhccCCccCC-cccccccccccchhhccCC
Confidence 9999999999999999984 78888764432211 2344566779999998653
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.97 E-value=6e-30 Score=230.54 Aligned_cols=138 Identities=30% Similarity=0.473 Sum_probs=122.6
Q ss_pred EEEECCCceEEEEecCCcEEEEEEeC-CCeEEEecCCccccCCCCcccCCcceeccccCCCC-----------CCCCcee
Q 025274 26 VVLRNPRGASAKISLHGGQALSWRTE-RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----------SLEQHGF 93 (255)
Q Consensus 26 v~L~~~~~~~a~V~~~GA~v~s~~~~-~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~-----------~~~~HGf 93 (255)
++|+|+. .+|+|..+||+|+||+.. +|.|+||.++.+.|. |++|+||||+||.. ++++|||
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~~~~~g~e~l~~~~~~~~~------~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIKDKKTGREYLWQGDPAYWG------RHAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEEeCCCCCEEEeCCChHHcC------CCCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 4688886 899999999999999985 589999999877775 67899999999974 4789999
Q ss_pred ecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeeccc
Q 025274 94 ARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHT 173 (255)
Q Consensus 94 aR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~Hp 173 (255)
+|++.|++.+.. ..+++|++.+++++..+|||+|+++++|+|.+ ++|+++++|+|+|+++|||++|+||
T Consensus 74 ~r~~~w~v~~~~----------~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~g~Hp 142 (288)
T cd09024 74 ARDMEFEVVEQS----------DDSVTFELTDNEETLKVYPFDFELRVTYTLEG-NTLKVTYEVKNPDDKTMPFSIGGHP 142 (288)
T ss_pred cccCceEEEEcc----------CCEEEEEEccCcchhhcCCeEEEEEEEEEEeC-CEEEEEEEEEcCCCCceEEEEeCCc
Confidence 999999998764 34789999888777889999999999999986 7899999999999999999999999
Q ss_pred cccCCCcc
Q 025274 174 YFAISDIS 181 (255)
Q Consensus 174 YF~v~d~~ 181 (255)
||++++..
T Consensus 143 YF~~~~~~ 150 (288)
T cd09024 143 AFNCPLDE 150 (288)
T ss_pred eEECCCCC
Confidence 99998643
No 6
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=99.96 E-value=1.8e-28 Score=220.36 Aligned_cols=158 Identities=28% Similarity=0.540 Sum_probs=121.1
Q ss_pred eEEEEECCCceEEEEecCCcEEEEEEeCC-CeEEEecCCc--cccC--------CCCccc---C-----CcceeccccCC
Q 025274 24 EQVVLRNPRGASAKISLHGGQALSWRTER-GEELLFTSTK--AIFK--------PPHAVR---G-----GIPICFPQFGN 84 (255)
Q Consensus 24 ~~v~L~~~~~~~a~V~~~GA~v~s~~~~~-g~e~L~~~~~--a~~~--------~~~~ir---g-----GiPv~fP~fg~ 84 (255)
+.|+|+|+.+++++|+.+||+|+||+..+ +.|+||..+. .+++ .+.+.| | |.++|||+++.
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~p~~~Ri~~g~~~~~g~~~~l~~~~~ 80 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWSNSFGGPILFPWPNRIRNGRFTFDGKPYCLPWNGP 80 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHHSTCTTCEECSCSSEEGGGEEEETTEEEEBSSSBT
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcccccceeeeecccceEECCEEEECCEEEEeeeccC
Confidence 36899998569999999999999999865 5999999986 2222 223344 4 66777777665
Q ss_pred CCCCCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCc-EEEEEEEEeCCCC
Q 025274 85 RGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGN-LALISRIRNINCK 163 (255)
Q Consensus 85 ~~~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~-L~i~~~V~N~g~~ 163 (255)
.++++|||+|++.|+|++.. + ..+++|++..+..+..+|||+|+++++|+|.+ ++ |+++++|+|.| +
T Consensus 81 -~~~~~HG~~~~~~w~v~~~~------~---~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~-~~~L~i~~~v~n~~-~ 148 (300)
T PF01263_consen 81 -YPNPIHGFARNKPWEVEEQS------E---DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDE-NGKLTITYEVTNDG-K 148 (300)
T ss_dssp -TTBEETBSGGGSB-EEEEEE------E---TTEEEEEEEEEETTHHHSSSEEEEEEEEEEET-TEEEEEEEEEEESS-S
T ss_pred -CCcCCCCCcccccEEEEEec------c---cceEEEEEEecCccceeeccceeeEEEEEECC-CCeEEEEEEEEecC-c
Confidence 56789999999999999985 1 13566666553333467999999999999998 67 99999999999 9
Q ss_pred eEEEeeeccccccCC----CcceeEEecCCCCcc
Q 025274 164 PFSFSIAYHTYFAIS----DISEVRIEGLETLDY 193 (255)
Q Consensus 164 ~~pf~~g~HpYF~v~----d~~~~~v~gl~g~~y 193 (255)
+|||++|+||||+++ +...+.+.+.....+
T Consensus 149 ~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~ 182 (300)
T PF01263_consen 149 PMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLEL 182 (300)
T ss_dssp EEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEE
T ss_pred cEEeeccccceEEcCCcceeeeEEEeccceeeec
Confidence 999999999999999 666777777443333
No 7
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.94 E-value=2.2e-26 Score=205.55 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=113.2
Q ss_pred EEecCCcEEEEEEeCC-CeEEEecCCccccCCCCcccCCcceeccccCCCC--------------------CCCCceeec
Q 025274 37 KISLHGGQALSWRTER-GEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG--------------------SLEQHGFAR 95 (255)
Q Consensus 37 ~V~~~GA~v~s~~~~~-g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~--------------------~~~~HGfaR 95 (255)
.|+..||.|.||+..+ +.++||..+.+.. ++.++|+|+||||.||+. .+++|||||
T Consensus 4 ~v~~~Ga~l~sl~~~~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar 80 (273)
T cd09021 4 LAPELGGSIAALTSRGDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGW 80 (273)
T ss_pred eCCCCCceEEEEEeCCCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchh
Confidence 5788999999999853 5899998776542 234799999999999863 137999999
Q ss_pred ccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 96 NRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 96 ~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
++.|+|++.. ..+++|++..++.+ +||+|+++++|+|.+ ++|+++++++|+++++|||++|+||||
T Consensus 81 ~~~w~v~~~~----------~~~v~l~l~~~~~~---~P~~~~~~~~y~L~~-~~L~i~~~~~N~~~~~~~~~~g~H~YF 146 (273)
T cd09021 81 RRPWQVVAAS----------ADSAELQLDHEADD---PPWAYRAEQRFHLAG-DGLSITLSVTNRGDRPMPAGLGFHPYF 146 (273)
T ss_pred cCceEEEecc----------CCeEEEEEecCCCC---CCEeEEEEEEEEEcC-CCEEEEEEEEECCCCCceeeeecCccE
Confidence 9999998764 23677777765443 499999999999987 789999999999999999999999999
Q ss_pred cCCCcceeEEecC
Q 025274 176 AISDISEVRIEGL 188 (255)
Q Consensus 176 ~v~d~~~~~v~gl 188 (255)
++++...++|.+.
T Consensus 147 ~~~~~~~l~v~~~ 159 (273)
T cd09021 147 PRTPDTRLQADAD 159 (273)
T ss_pred ecCCCCEEEEecc
Confidence 9999888888775
No 8
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.94 E-value=2.3e-26 Score=204.29 Aligned_cols=145 Identities=23% Similarity=0.405 Sum_probs=122.9
Q ss_pred EEEEecCCcEEEEEEeCCCeEEEecCCccccCCCCcccCCcceeccccCCCC------------------CCCCceeecc
Q 025274 35 SAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG------------------SLEQHGFARN 96 (255)
Q Consensus 35 ~a~V~~~GA~v~s~~~~~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~------------------~~~~HGfaR~ 96 (255)
+++|..+||+|.||+.+++.++||.++.+......+.++|.|+||||+||.. .+++|||+|+
T Consensus 2 ~~~i~~~Ga~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~ 81 (284)
T cd01081 2 VAVIAPRGANIISLKVKGDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRN 81 (284)
T ss_pred EEEEeCcCcEEEEEEcCCCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeec
Confidence 6789999999999998645899999987665445677899999999999862 3589999999
Q ss_pred cCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeecccccc
Q 025274 97 RSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (255)
Q Consensus 97 ~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF~ 176 (255)
++|+++..+ + +..+|+|++...+.+. +|||+|+++++|+|.+ ++|+++++|+|+++++|||++|+||||+
T Consensus 82 ~~w~v~~~~------~--~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~~-~~L~i~~~v~N~~~~~~p~~~g~HpyF~ 151 (284)
T cd01081 82 LPWRVVATD------E--EEASVTLSYDLNDGPG-GYPFPLELTVTYTLDA-DTLTITFTVTNLGDEPMPFGLGWHPYFG 151 (284)
T ss_pred CcEEEEEec------c--CCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEeC-CeEEEEEEEEeCCCCCcceeeecCceEe
Confidence 999998874 1 1457888888776655 8999999999999997 7899999999999999999999999999
Q ss_pred CCCc--ceeEEecCC
Q 025274 177 ISDI--SEVRIEGLE 189 (255)
Q Consensus 177 v~d~--~~~~v~gl~ 189 (255)
+++. .+++|....
T Consensus 152 ~~~~~~~~~~l~~~~ 166 (284)
T cd01081 152 LPGVAIEDLRLRVPA 166 (284)
T ss_pred cCCCcccceEEEecC
Confidence 9974 677776644
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.90 E-value=8.3e-23 Score=183.50 Aligned_cols=133 Identities=18% Similarity=0.304 Sum_probs=108.3
Q ss_pred EEEEecCCcEEEEEEeCCCeEEEecCCccccCCCCcccCCcceeccccCCCC-----------CCC---------Cceee
Q 025274 35 SAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----------SLE---------QHGFA 94 (255)
Q Consensus 35 ~a~V~~~GA~v~s~~~~~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~-----------~~~---------~HGfa 94 (255)
+++|..+||.|++|+. +|.++||..+..... ... .| |+|||+.||+. +++ +|||+
T Consensus 2 ~v~i~~~Ga~l~~~~~-~g~~il~~~~~~~~~--~~~-~g-~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~~ 76 (284)
T cd09022 2 RAVVTEVGAGLRSLTV-GGRDLVEPYPADEVP--PGA-AG-QVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGLV 76 (284)
T ss_pred EEEEEecCcEEEEEEE-CCEEEEecCCCccCC--ccc-cc-cEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCCe
Confidence 6789999999999998 578999977655421 122 33 79999999873 233 99999
Q ss_pred cccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeecccc
Q 025274 95 RNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTY 174 (255)
Q Consensus 95 R~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpY 174 (255)
|.+.|++++.. ..+++|++.+. ...+||++|+++++|+|.+ ++|+++++|+|+++++|||++|+|||
T Consensus 77 ~~~~w~v~~~~----------~~~v~l~l~~~--~~~~yP~~~~~~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~g~Hpy 143 (284)
T cd09022 77 RWADWQLVEHT----------DSSVTLRTRIP--PQPGYPFTLELTVTYELDD-DGLTVTLTATNVGDEPAPFGVGFHPY 143 (284)
T ss_pred ecceEEEeecc----------CCeEEEEEEeC--CccCCCceEEEEEEEEEcC-CcEEEEEEEEeCCCCCeEeeeEecce
Confidence 99999998764 23578888764 3578999999999999997 68999999999999999999999999
Q ss_pred ccCCCc--ceeEE
Q 025274 175 FAISDI--SEVRI 185 (255)
Q Consensus 175 F~v~d~--~~~~v 185 (255)
|++++. .+++|
T Consensus 144 F~l~~~~~~~~~L 156 (284)
T cd09022 144 LSAGGAPLDECTL 156 (284)
T ss_pred EecCCCCcccEEE
Confidence 999863 56554
No 10
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=99.90 E-value=2.6e-22 Score=182.13 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=116.8
Q ss_pred eeEEEEECCCceEEEEecCCcEEEEEEeCCCeEEEecCCccccCCCCcccCCcceeccccCCCC-----------C----
Q 025274 23 IEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----------S---- 87 (255)
Q Consensus 23 l~~v~L~~~~~~~a~V~~~GA~v~s~~~~~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~-----------~---- 87 (255)
-.+++|+++. .+++|..+||.|.+|+.. +.++++..+.+.+. + ..+.++++||.||+. +
T Consensus 10 ~~~~~l~~~~-~~v~i~~~Ga~i~~l~~~-~~~vv~~~~~~~~~---~-~~~g~~L~P~anRI~~g~f~~~G~~y~L~~N 83 (300)
T PRK15172 10 GQTISLAAGD-YQATIVTVGAGLAELTFQ-GRHLVIPHKPEEMP---L-AHLGKVLIPWPNRIANGCYRYQGQEYQLPIN 83 (300)
T ss_pred cCEEEEeCCC-EEEEEecCCcEEEEEEEC-CEEEEecCCccccC---c-cccccEecccCCeecCCEEEECCEEEECCCC
Confidence 4578999986 999999999999999984 67888876654442 2 234479999999863 1
Q ss_pred -----CCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCC
Q 025274 88 -----LEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINC 162 (255)
Q Consensus 88 -----~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~ 162 (255)
..+||+++...|+|.+.. ..+++|++...+ ..+|||+|+++++|+|.++++|+++++++|.++
T Consensus 84 ~~~~~~~lHG~~~~~~W~v~~~~----------~~~v~l~~~~~~--~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~~ 151 (300)
T PRK15172 84 EHVSKAAIHGLLAWRDWQISELT----------ATSVTLTAFLPP--SYGYPFMLASQVIYSLDAATGLSVEIASQNIGD 151 (300)
T ss_pred CCCCCcccCCCccCceEEEEEec----------CCEEEEEEEcCC--CCCCCEEEEEEEEEEEccCCeEEEEEEEEECCC
Confidence 239999999999998764 235777777643 368999999999999975468999999999999
Q ss_pred CeEEEeeeccccccCC--CcceeEEe
Q 025274 163 KPFSFSIAYHTYFAIS--DISEVRIE 186 (255)
Q Consensus 163 ~~~pf~~g~HpYF~v~--d~~~~~v~ 186 (255)
++|||++|+||||+++ ++.+++++
T Consensus 152 ~~~P~~~g~HpYFnl~~~~~~~~~L~ 177 (300)
T PRK15172 152 VPAPYGVGIHPYLTCNLTSVDEYLLQ 177 (300)
T ss_pred CceeeEEecCceEecCCCChhceEEE
Confidence 9999999999999997 35565553
No 11
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.8e-21 Score=177.32 Aligned_cols=147 Identities=24% Similarity=0.360 Sum_probs=115.9
Q ss_pred CCCeeEEEEECCCceEEEEecCCcEEEEEEeCCCeEEEecCCc-cccCCCCcccC-CcceeccccCCCC-----------
Q 025274 20 RNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTK-AIFKPPHAVRG-GIPICFPQFGNRG----------- 86 (255)
Q Consensus 20 ~~gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~~g~e~L~~~~~-a~~~~~~~irg-GiPv~fP~fg~~~----------- 86 (255)
......+++.+..+..++|..+||.|++|+. .++++++..+. +.+. ..++ +.++++|+.||+.
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~-~~~~v~l~~~~~~~~~---~~~~~~ga~l~p~anRI~~g~f~~~G~~y 84 (308)
T COG2017 9 GQPVRLLTLGNGGGMVVTVPDWGATLTSLRV-NGRNLLLGFDDAESYP---ATRGYGGAILGPYANRISNGRFTLDGKTY 84 (308)
T ss_pred CCceEEEEEeCCCeEEEEEccCCcEEEEEEE-CCceEEeecCCHHHhc---cccccccceecCccCcccCCEEEECCEEE
Confidence 4456788899988888899999999999998 57777765542 2222 1223 7899999999873
Q ss_pred C-------CCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEe
Q 025274 87 S-------LEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRN 159 (255)
Q Consensus 87 ~-------~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N 159 (255)
+ .++||+++..+|++.+... ++ ...++|.+.+.+ .+||++|+++++|+|.++ +|+++++++|
T Consensus 85 ~L~~N~~~~~lHG~~~~~~~~v~~~~~-----~~--~~~~~l~~~~~~---~gyP~~l~~~vtY~L~~~-~L~v~~~~~n 153 (308)
T COG2017 85 QLPPNEGGNALHGGARDFDWQVWEAEE-----DD--NAEFSLVLRDGE---DGYPGNLEATVTYTLNED-GLTVTYEVTN 153 (308)
T ss_pred EeCCCCCCccccCCccCCCeeEEEEEe-----cc--CCEEEEEecccC---CCCCceEEEEEEEEEcCC-CEEEEEEEEe
Confidence 2 3499999999999998852 11 225666665544 459999999999999984 5999999999
Q ss_pred CCCCeEEEeeeccccccCCCcc
Q 025274 160 INCKPFSFSIAYHTYFAISDIS 181 (255)
Q Consensus 160 ~g~~~~pf~~g~HpYF~v~d~~ 181 (255)
.++++|||++|+||||++++..
T Consensus 154 ~~~~~~p~~~g~HpYFnl~~~~ 175 (308)
T COG2017 154 DGDEPTPFNLGNHPYFNLPGDG 175 (308)
T ss_pred CCCCcceecccccceEecCCCC
Confidence 9999999999999999999653
No 12
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.85 E-value=2.6e-20 Score=170.75 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=109.5
Q ss_pred EEEECCCceEEEEecCCcEEEEEEeCC--C--eEEEecCC-ccccCCCCcccCCcceeccccCCCC-----------CCC
Q 025274 26 VVLRNPRGASAKISLHGGQALSWRTER--G--EELLFTST-KAIFKPPHAVRGGIPICFPQFGNRG-----------SLE 89 (255)
Q Consensus 26 v~L~~~~~~~a~V~~~GA~v~s~~~~~--g--~e~L~~~~-~a~~~~~~~irgGiPv~fP~fg~~~-----------~~~ 89 (255)
++|+|+++++++|..+||.|.||+.++ | .++||..+ .+.|....+.. -+++.||.||+. +++
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--g~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYF--GATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCcc--CCcccCcCCeecCCEEEECCEEEEcc
Confidence 678888569999999999999998632 2 78999884 55666444443 345788988863 233
Q ss_pred -----------CceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEE
Q 025274 90 -----------QHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIR 158 (255)
Q Consensus 90 -----------~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~ 158 (255)
.|||+|. .|++...+ ..+|+|++.+.+ ...+|||+|+++++|+|.++++|+++++++
T Consensus 80 ~Ne~~~~LHGg~~G~~~~-~w~~~~~~----------~~~v~l~~~~~~-~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~ 147 (326)
T cd09019 80 ANEGPNHLHGGPKGFDKR-VWDVEEVE----------ENSVTFSLVSPD-GEEGFPGNLTVTVTYTLTDDNELTIEYEAT 147 (326)
T ss_pred CCCCCcccCCCCccccCc-EEeEEecc----------CCEEEEEEECCc-ccCCCCeEEEEEEEEEECCCCEEEEEEEEE
Confidence 3777787 89998764 457899998763 468999999999999998646899999999
Q ss_pred eCCCCeEEEeeeccccccCCC
Q 025274 159 NINCKPFSFSIAYHTYFAISD 179 (255)
Q Consensus 159 N~g~~~~pf~~g~HpYF~v~d 179 (255)
| +++|||++|+||||+++.
T Consensus 148 ~--~~~~p~~~g~HpyFnl~~ 166 (326)
T cd09019 148 T--DKPTPVNLTNHSYFNLAG 166 (326)
T ss_pred e--CCCeEecccceeeEecCC
Confidence 8 599999999999999983
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.80 E-value=2.2e-18 Score=158.88 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=109.5
Q ss_pred CeeEEEEECCCceEEEEecCCcEEEEEEeC--CC--eEEEecCC-ccccCCCCcccCCcceeccccCCCC----------
Q 025274 22 GIEQVVLRNPRGASAKISLHGGQALSWRTE--RG--EELLFTST-KAIFKPPHAVRGGIPICFPQFGNRG---------- 86 (255)
Q Consensus 22 gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~--~g--~e~L~~~~-~a~~~~~~~irgGiPv~fP~fg~~~---------- 86 (255)
.+..++|+|+. ++++|..+||.|.||+.+ +| .+++...+ .+.+....+.. | +++.|+.||+.
T Consensus 8 ~~~~~~L~n~~-l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~~-G-a~lgp~anRI~~g~~~~~G~~ 84 (337)
T PLN00194 8 KPGIYELKNGN-ISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPYF-G-AIVGRVANRIKGAKFTLNGVT 84 (337)
T ss_pred eeEEEEEEeCC-EEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCcc-C-CeeCCCCCceeCCEEEECCEE
Confidence 45678899876 999999999999999862 23 55664443 22233223443 4 34899988863
Q ss_pred -C-------CCCceeec---ccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEE
Q 025274 87 -S-------LEQHGFAR---NRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALIS 155 (255)
Q Consensus 87 -~-------~~~HGfaR---~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~ 155 (255)
. ..+||+.+ ...|+|+... ++ +..+|+|++.+.+ ...+||++|+++++|+|.++++|++++
T Consensus 85 y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~------~~-~~~~v~~~l~~~~-~~~gyP~~~~~~v~Y~L~~~~~L~i~~ 156 (337)
T PLN00194 85 YKLPPNNGPNSLHGGPKGFSKVVWEVAKYK------KG-EKPSITFKYHSFD-GEEGFPGDLSVTVTYTLLSSNTLRLDM 156 (337)
T ss_pred EEeccCCCCcccCCCCcccCceEEeEEEec------cC-CCcEEEEEEECCC-cCCCCCEEEEEEEEEEECCCCeEEEEE
Confidence 1 23697543 4689998764 11 2468999998764 468999999999999997547899999
Q ss_pred EEEeCCCCeEEEeeeccccccCCC
Q 025274 156 RIRNINCKPFSFSIAYHTYFAISD 179 (255)
Q Consensus 156 ~V~N~g~~~~pf~~g~HpYF~v~d 179 (255)
+++|. +++|||++|+||||+++.
T Consensus 157 ~~~n~-~~~~p~~~g~HpYFnL~~ 179 (337)
T PLN00194 157 EAKPL-NKATPVNLAQHTYWNLAG 179 (337)
T ss_pred EEEEC-CCCeEEEccccceEEcCC
Confidence 99999 999999999999999973
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.77 E-value=1.3e-17 Score=153.54 Aligned_cols=143 Identities=19% Similarity=0.257 Sum_probs=110.4
Q ss_pred CeeEEEEECCCceEEEEecCCcEEEEEEeC---CCeEEEecCC-ccccCCCCcccCCcceeccccCCCC-----------
Q 025274 22 GIEQVVLRNPRGASAKISLHGGQALSWRTE---RGEELLFTST-KAIFKPPHAVRGGIPICFPQFGNRG----------- 86 (255)
Q Consensus 22 gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~---~g~e~L~~~~-~a~~~~~~~irgGiPv~fP~fg~~~----------- 86 (255)
.+..++|+|..+++++|..+||.|.||+.+ ...+++.-.+ .+.|....+..|. ++.||.||+.
T Consensus 3 ~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~~~~~~~Ga--~igp~anRI~~g~f~~~G~~y 80 (335)
T TIGR02636 3 PAQLITLTNNNGMTISFMDIGATWLSCQVPLAGELREVLLGFASMEEYYKQDAYLGA--TVGRYANRIANGSFEIDGETY 80 (335)
T ss_pred eeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCCCccceEECCCCHHHHhhCCCccCC--CcCCCCceecCCEEEECCEEE
Confidence 356789999888999999999999999852 2345664443 3444433344333 5789988862
Q ss_pred -------CCCCceee---cccCeEEEe-cCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEE
Q 025274 87 -------SLEQHGFA---RNRSWVIDD-NPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALIS 155 (255)
Q Consensus 87 -------~~~~HGfa---R~~~W~v~~-~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~ 155 (255)
...+||+. +.+.|+++. .+ ..+|+|.+.+.+. ..+||+.++++++|+|+++++|++++
T Consensus 81 ~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~----------~~~v~l~~~~~~~-~~gyPg~l~~~vtY~L~~~~~L~i~~ 149 (335)
T TIGR02636 81 QLSINQGGNCLHGGPEGFDKRRWNIEELQE----------EVQVKFSLESPDG-DQGFPGNLTVSVTYTLTDDNELTIEY 149 (335)
T ss_pred EeccCCCCcccCCCCccccccEEeEeeecC----------CCEEEEEEECCCc-CCCCCeEEEEEEEEEECCCCEEEEEE
Confidence 23599998 888999976 43 3478999987544 68999999999999996557899999
Q ss_pred EEEeCCCCeEEEeeeccccccCCC
Q 025274 156 RIRNINCKPFSFSIAYHTYFAISD 179 (255)
Q Consensus 156 ~V~N~g~~~~pf~~g~HpYF~v~d 179 (255)
+++ +++++||++++||||++++
T Consensus 150 ~a~--~d~~tp~nlt~H~YFnL~g 171 (335)
T TIGR02636 150 EAT--TDKATPFNLTNHVYFNLDG 171 (335)
T ss_pred EEE--ECCceEEeccccceEEcCC
Confidence 886 8999999999999999985
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.73 E-value=1.5e-16 Score=146.86 Aligned_cols=143 Identities=20% Similarity=0.281 Sum_probs=108.0
Q ss_pred CeeEEEEECCCceEEEEecCCcEEEEEEe--CCC--eEEEecC-CccccCCCCcccCCcceeccccCCCC----------
Q 025274 22 GIEQVVLRNPRGASAKISLHGGQALSWRT--ERG--EELLFTS-TKAIFKPPHAVRGGIPICFPQFGNRG---------- 86 (255)
Q Consensus 22 gl~~v~L~~~~~~~a~V~~~GA~v~s~~~--~~g--~e~L~~~-~~a~~~~~~~irgGiPv~fP~fg~~~---------- 86 (255)
.+..++|+|.++++++|..+||.|.||+. ++| .+++.-. +.+.|....+..|. ++.||.||+.
T Consensus 8 ~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~Ga--~iGr~anRI~~g~f~~~G~~ 85 (342)
T PRK11055 8 PYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLGA--SVGRYANRIANSRFTLDGET 85 (342)
T ss_pred eEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccCc--eeCCcCCcccCCEEEECCEE
Confidence 46688999877899999999999999985 234 4665433 33444433344443 6889988863
Q ss_pred --------CCCCceee---cccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEE
Q 025274 87 --------SLEQHGFA---RNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALIS 155 (255)
Q Consensus 87 --------~~~~HGfa---R~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~ 155 (255)
...+||.. +...|++++.+ ..+|+|++.+.+ ...+||+.++++++|+|.++++|++++
T Consensus 86 y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~----------~~~v~l~~~~~~-g~~GyPg~l~~~vtY~L~~~~~l~i~~ 154 (342)
T PRK11055 86 YQLSPNQGGNQLHGGPEGFDKRRWQIVNQN----------DRQVTFSLSSPD-GDQGFPGNLGATVTYRLTDDNRVSITY 154 (342)
T ss_pred EEcccCCCCcccCCCCcccCCcEEEEEEcc----------CCEEEEEEECCC-cCCCCCeEEEEEEEEEEcCCCeEEEEE
Confidence 23589985 56789997763 347899988753 467999999999999998756788777
Q ss_pred EEEeCCCCeEEEeeeccccccCCC
Q 025274 156 RIRNINCKPFSFSIAYHTYFAISD 179 (255)
Q Consensus 156 ~V~N~g~~~~pf~~g~HpYF~v~d 179 (255)
++ ++++++||++++||||+++.
T Consensus 155 ~a--~~d~~tp~nlt~H~YFnL~g 176 (342)
T PRK11055 155 RA--TVDKPCPVNLTNHAYFNLDG 176 (342)
T ss_pred EE--EcCCCeEEeccccceEECCC
Confidence 54 57999999999999999974
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.64 E-value=7.3e-15 Score=136.97 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=110.3
Q ss_pred CCCeeEEEEECCCceEEEEecCCcEEEEEEe--CC-C--eEEEecCC--ccccCCCCcccCCcceeccccCCCC------
Q 025274 20 RNGIEQVVLRNPRGASAKISLHGGQALSWRT--ER-G--EELLFTST--KAIFKPPHAVRGGIPICFPQFGNRG------ 86 (255)
Q Consensus 20 ~~gl~~v~L~~~~~~~a~V~~~GA~v~s~~~--~~-g--~e~L~~~~--~a~~~~~~~irgGiPv~fP~fg~~~------ 86 (255)
++.+..++|+|.. +++.|..+||.|.|++. ++ | .+++.-.+ .+.|....+. .|. ++.||.||+.
T Consensus 10 ~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y-~Ga-~iGr~AnRI~~G~f~l 86 (376)
T PTZ00485 10 YGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDY-MGA-TVGRCAGRVAGGVFTL 86 (376)
T ss_pred cCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCc-cCc-EeCCCCCeEECCEEEE
Confidence 7778899999986 99999999999999885 22 4 46665442 3444433344 343 4778888762
Q ss_pred ----------------CCCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEe--CC
Q 025274 87 ----------------SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLA--AD 148 (255)
Q Consensus 87 ----------------~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~--~~ 148 (255)
+...+||.+. .|++.... +.+..+|+|.+.+. +...+||+.++++++|+|. ++
T Consensus 87 dG~~YqL~~Neg~n~LHGG~~gf~~~-~W~v~~~~-------~~~~~~V~f~~~~~-dg~~GfPG~l~v~vtYtL~~~~~ 157 (376)
T PTZ00485 87 DGVKYYTQKNRGENTCHCGDDAYHKK-HWGMKLIE-------TANVIGVRFNYTSP-HMENGFPGELVSKVTYSIERSKP 157 (376)
T ss_pred CCEEEEccCCCCCcccCCCCCcccee-eeeEEEec-------cCCCcEEEEEEECC-CcCCCCCEEEEEEEEEEEecCCC
Confidence 1134688754 69986432 11145799999874 4578999999999999996 24
Q ss_pred CcEEEE---EEEEeCCCCeEEEeeeccccccCCC
Q 025274 149 GNLALI---SRIRNINCKPFSFSIAYHTYFAISD 179 (255)
Q Consensus 149 ~~L~i~---~~V~N~g~~~~pf~~g~HpYF~v~d 179 (255)
++|+++ ++++|++++++|+++++|+||++++
T Consensus 158 ~~L~i~y~a~~~~n~~d~~Tp~nltnH~YFNL~g 191 (376)
T PTZ00485 158 NVLKTIYDSYIPETSPADATPVNIFNHAYWNLNG 191 (376)
T ss_pred CEEEEEEEEEeccccCCccceeeeccceeEEcCC
Confidence 789999 8889999999999999999999964
No 17
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.39 E-value=3.3e-12 Score=115.11 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=98.2
Q ss_pred EEecCCcEEEEEEeCCCeEEEecCCcccc-----C--CC---CcccCCccee--ccccCCC-----CCCCCceeecccCe
Q 025274 37 KISLHGGQALSWRTERGEELLFTSTKAIF-----K--PP---HAVRGGIPIC--FPQFGNR-----GSLEQHGFARNRSW 99 (255)
Q Consensus 37 ~V~~~GA~v~s~~~~~g~e~L~~~~~a~~-----~--~~---~~irgGiPv~--fP~fg~~-----~~~~~HGfaR~~~W 99 (255)
+++..|..|.+... +|.++.|.++...- . ++ ...-||.-.- ++++|.. ...+.||++++.+|
T Consensus 4 vlp~rg~dI~~~~~-~g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG~~~~~p~ 82 (284)
T cd09023 4 VLPDRGMDIGRASY-KGIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHGRISNTPA 82 (284)
T ss_pred EcccCCcceeeeEE-CCEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcccccCCCc
Confidence 34578999998887 48999998864222 1 00 0112333333 4555542 25689999999999
Q ss_pred EEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccccCCC
Q 025274 100 VIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISD 179 (255)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF~v~d 179 (255)
+++.... ++++...|+++....+....+|||.++.+++|+|.+ ++|+++.+|+|.|+++||+++++|+||..+-
T Consensus 83 ~~~~~~~-----~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~-~~l~i~~~VtN~g~~~~P~~~~~H~n~~~p~ 156 (284)
T cd09023 83 ELVGVEE-----DEEGDYEIEVSGEVREAALFGENLRLERTIETDLGS-NEIRLEDRVTNEGFRPTPHMLLYHVNFGYPL 156 (284)
T ss_pred ceEEEEe-----ccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCC-ceEEEEEEEEeCCCCCCcceEEeeEEcCCcc
Confidence 9988752 112244566666554445678999999999999987 7899999999999999999999999998863
No 18
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.7e-10 Score=103.08 Aligned_cols=142 Identities=16% Similarity=0.260 Sum_probs=102.3
Q ss_pred CCCeeEEEEECCCceEEEEecCCcEEEEEEeCCC----eE-EEecCCccccCC-CCcccCCcceeccccCCCC-------
Q 025274 20 RNGIEQVVLRNPRGASAKISLHGGQALSWRTERG----EE-LLFTSTKAIFKP-PHAVRGGIPICFPQFGNRG------- 86 (255)
Q Consensus 20 ~~gl~~v~L~~~~~~~a~V~~~GA~v~s~~~~~g----~e-~L~~~~~a~~~~-~~~irgGiPv~fP~fg~~~------- 86 (255)
.+-+..++|.+..+++|+|..+||.|+|+..++. .+ +|-..+-+.|.. ..+.-|. -+||..
T Consensus 17 ~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGa------tvGRvANRI~~G~ 90 (353)
T KOG1604|consen 17 KQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGA------TVGRVANRIAKGK 90 (353)
T ss_pred cCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecc------eehhhhhhcccce
Confidence 4567789999998999999999999999986432 23 455555455544 2222221 133321
Q ss_pred -------------------CCCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeC
Q 025274 87 -------------------SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAA 147 (255)
Q Consensus 87 -------------------~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~ 147 (255)
+...-||-+. .|++..... + .. ++|...+ +++.++||.+..+.++|+|..
T Consensus 91 F~ldgk~y~lt~N~g~n~lHgg~~gf~~~-~w~v~~~~~-------~-~~-i~f~~~s-~dg~eg~PG~l~V~vtYtLn~ 159 (353)
T KOG1604|consen 91 FSLDGKPYKLTVNNGKNTLHGGIKGFDKV-IWEVVKHQP-------D-GV-IVFSHLS-PDGDEGFPGDLKVTVTYTLNV 159 (353)
T ss_pred EEECCceEEecccCCCccccCCcccccce-EEEEEEecC-------C-CE-EEEEEEC-CCCCCCCCccEEEEEEEEEcc
Confidence 2245678776 599999862 1 22 6787777 566889999999999999998
Q ss_pred CCcEEEEEEEEeCCCCeEEEeeeccccccCCC
Q 025274 148 DGNLALISRIRNINCKPFSFSIAYHTYFAISD 179 (255)
Q Consensus 148 ~~~L~i~~~V~N~g~~~~pf~~g~HpYF~v~d 179 (255)
.+.|.+.+..+-. +++.|++++.|+|||+..
T Consensus 160 ~n~l~i~~~A~~~-~~~TPiNLtnHsYfNL~g 190 (353)
T KOG1604|consen 160 ANRLLIMMEATAL-DKATPINLTNHSYFNLAG 190 (353)
T ss_pred CCeeeeeehhhcc-CCCcceeeccceeEeccC
Confidence 7888887765443 889999999999999983
No 19
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=98.47 E-value=4.7e-07 Score=82.22 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeC-CCcEEEEEEEEeCCCCeE
Q 025274 87 SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAA-DGNLALISRIRNINCKPF 165 (255)
Q Consensus 87 ~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~-~~~L~i~~~V~N~g~~~~ 165 (255)
..+.||-+.+.+|+..-.... .|+ +...+++.-.. +....||++|+++.+|+|.. ...|+|+++|+|.|+.||
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~---~d~-~~~~l~l~g~~--~~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~p~ 134 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVG---EDA-SGDYLALTGEY--EYVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLSAQPM 134 (293)
T ss_pred ccCCcCCcCCCCccceEEEEE---ecC-CCCEEEEEEEE--EeeeccCccEEEEEEEEEeCCCCEEEEEEEEEECCCCCC
Confidence 468999966666654321100 011 12334444332 23468999999999999974 357999999999999999
Q ss_pred EEeeeccccccCC
Q 025274 166 SFSIAYHTYFAIS 178 (255)
Q Consensus 166 pf~~g~HpYF~v~ 178 (255)
|+.+++|+||...
T Consensus 135 p~~~~~H~nfg~~ 147 (293)
T cd09269 135 PLMYMCHMNYAYV 147 (293)
T ss_pred hhhEecccccCCC
Confidence 9999999999873
No 20
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=98.15 E-value=9.6e-06 Score=73.99 Aligned_cols=150 Identities=13% Similarity=0.150 Sum_probs=85.7
Q ss_pred CCeeEEEEECCCceEEEEe-cCCcEEEEEEeCCCeEEEecCCcc-----ccC--CCCcccCCc----cee-ccccCCCC-
Q 025274 21 NGIEQVVLRNPRGASAKIS-LHGGQALSWRTERGEELLFTSTKA-----IFK--PPHAVRGGI----PIC-FPQFGNRG- 86 (255)
Q Consensus 21 ~gl~~v~L~~~~~~~a~V~-~~GA~v~s~~~~~g~e~L~~~~~a-----~~~--~~~~irgGi----Pv~-fP~fg~~~- 86 (255)
.|+.+++++|+.+++++|. ..|..|.+... +|.++-|.++.. .++ .+.....+. .-| +..+|...
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~-~G~~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G~P~~ 80 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEF-DGVNLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNGAPSE 80 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEE-TTEEE----S-----GGG--HHHHTGGGGT---SEEEEEES--SS-EE
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEE-CCEEecccCCCcCCCCccccccCCcchhhcccchheeeccccCCCCCC
Confidence 5889999999777888775 78999999987 589999988753 111 000111111 111 12333221
Q ss_pred ----CCCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEe-CCCcEEEEEEEEeCC
Q 025274 87 ----SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLA-ADGNLALISRIRNIN 161 (255)
Q Consensus 87 ----~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~-~~~~L~i~~~V~N~g 161 (255)
..|.||=..+.+|+.+.... ++++...++++=.-. ..+.|-..+.++-++++. +.+.++++.+|+|.+
T Consensus 81 ~~g~~~~LHG~i~~~Pa~~v~~~~-----~~~~~~~i~v~G~v~--~~~~fg~~l~l~r~i~~~~g~~~i~i~d~VtN~~ 153 (302)
T PF14486_consen 81 DDGETYPLHGRISNTPAEHVWLEI-----WDGDGYEIEVSGEVR--EAAGFGENLRLERTIRLRAGSNTIRIEDRVTNLG 153 (302)
T ss_dssp ETTEEE-TTBSGGGS--SEEEEEE-----ESSTT--EEEEEEEE--EEETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-S
T ss_pred cCCccccccccccCCCcceEEEEE-----ecCCCcEEEEEEEEE--EEEeccCcEEEEEEEEEECCCcEEEEEEEEEECC
Confidence 36899999999997655431 111234444433222 134577777777777773 336899999999999
Q ss_pred CCeEEEeeeccccccCC
Q 025274 162 CKPFSFSIAYHTYFAIS 178 (255)
Q Consensus 162 ~~~~pf~~g~HpYF~v~ 178 (255)
..|+|+.+.+|.=|..+
T Consensus 154 ~~p~p~m~lyH~N~G~p 170 (302)
T PF14486_consen 154 FQPMPLMYLYHMNFGYP 170 (302)
T ss_dssp SS-EEEEEEEEEEE-TT
T ss_pred CCCchhHHhhhhccCcc
Confidence 99999999999999888
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=97.43 E-value=0.008 Score=54.03 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=75.0
Q ss_pred eEEEEECCCceEEEEe-cCCcEEEEEEeCCCeEEEecCCcc---ccC---CCCcccCCcceec--cc-cCCCC--CCCCc
Q 025274 24 EQVVLRNPRGASAKIS-LHGGQALSWRTERGEELLFTSTKA---IFK---PPHAVRGGIPICF--PQ-FGNRG--SLEQH 91 (255)
Q Consensus 24 ~~v~L~~~~~~~a~V~-~~GA~v~s~~~~~g~e~L~~~~~a---~~~---~~~~irgGiPv~f--P~-fg~~~--~~~~H 91 (255)
.+++|+|+. .+++|. ..|+.|+++...++.++||..... ... ..-...||- -+| |+ .-+.. ..+--
T Consensus 5 ~~~~l~N~~-i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~Pd 82 (274)
T PF14315_consen 5 NCLRLSNGD-IELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWPPD 82 (274)
T ss_pred eEEEEECCC-EEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCCCc
Confidence 689999986 888876 789999999887677788433221 111 011222332 444 22 00000 00111
Q ss_pred eeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCC-cEEEEEEEEeCCCCeEEEeee
Q 025274 92 GFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADG-NLALISRIRNINCKPFSFSIA 170 (255)
Q Consensus 92 GfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~-~L~i~~~V~N~g~~~~pf~~g 170 (255)
-+.-+.+|+++.. ...|+|+-..++. ..++++.+|+|.++. +++++.+++|.++.++++++=
T Consensus 83 ~~ld~~p~~~~~~-----------~~~v~L~s~~~~~------tgiq~~~~i~l~~~~~~i~v~~~i~N~~~~~~~~a~W 145 (274)
T PF14315_consen 83 PVLDNGPYEVEID-----------DDGVRLTSPPSPK------TGIQKERTITLDADRPSIEVTHRITNIGDWPVEWAPW 145 (274)
T ss_pred ccccCCceeEEEc-----------CCEEEEecCCCCc------cCcEEEEEEEECCCCCEEEEEEEEEeCCCCcceeeee
Confidence 1222455666552 3455555443322 246888899998643 599999999999998876543
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=92.92 E-value=2.5 Score=39.33 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=67.9
Q ss_pred eEEEEECCCceEEEEecCCcEEEEEEeCCC--------eEEEecCCccccCCCCcccCCcceeccc-cCCCCC-CCCce-
Q 025274 24 EQVVLRNPRGASAKISLHGGQALSWRTERG--------EELLFTSTKAIFKPPHAVRGGIPICFPQ-FGNRGS-LEQHG- 92 (255)
Q Consensus 24 ~~v~L~~~~~~~a~V~~~GA~v~s~~~~~g--------~e~L~~~~~a~~~~~~~irgGiPv~fP~-fg~~~~-~~~HG- 92 (255)
..++|+++. .+++|+..||.|.++...+- .++...++.. ...++- .|..+. .+.-.
T Consensus 74 ~~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~~------------~~~y~~~~gl~~~~~~~~~~ 140 (366)
T TIGR03593 74 KRITVKTDV-LRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDGA------------ERLYVAQSGLIGANGADLAL 140 (366)
T ss_pred CeEEEECCe-EEEEEeCCCceeeeeccccCccccCCCCCcEEeecCCC------------CceeEEEeccccCCCCcccC
Confidence 468999986 99999999999999875211 2232222211 111221 121111 01000
Q ss_pred eecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCC-CcEEEEEEEEeCCCCeEEE
Q 025274 93 FARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAAD-GNLALISRIRNINCKPFSF 167 (255)
Q Consensus 93 faR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~-~~L~i~~~V~N~g~~~~pf 167 (255)
...+..|++....-.. .++...|+|++.... ...++.+|++..+ -.+.++++|+|.++.+...
T Consensus 141 ~~~~~~~~~~~~~~~l----~~~~~~v~l~~~~~~--------G~~v~k~ytf~~~sY~i~v~~~v~N~~~~~~~~ 204 (366)
T TIGR03593 141 PGHRTVWQAEGGEYTL----TPGQLPVTLTWDNSN--------GVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVSL 204 (366)
T ss_pred CCCCceEEeCCCceee----CCCCEEEEEEEECCC--------CeEEEEEEEEeCCeEEEEeEEEEEeCCCCCeeE
Confidence 1344578886542100 112346777766432 3678999999864 2688899999999876553
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=92.88 E-value=2.2 Score=37.63 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=58.2
Q ss_pred EEEECCCceEEEEecCCcEEEEEEeC--------CCeEEEecCCccccCCCCcccCCcceeccccCCCCCCCCceeeccc
Q 025274 26 VVLRNPRGASAKISLHGGQALSWRTE--------RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNR 97 (255)
Q Consensus 26 v~L~~~~~~~a~V~~~GA~v~s~~~~--------~g~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~~~~~HGfaR~~ 97 (255)
++|+|+. .+++++..||.|.||... ++.++-...+...- .......+.++.-|. . ..- .+.
T Consensus 2 v~ven~~-~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~~----~~~~~~~l~~~~~~~--~--~~~--~~~ 70 (270)
T PF14849_consen 2 VTVENDL-FKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSDEE----NYPLAFGLVFNTGGA--Q--LPT--NDL 70 (270)
T ss_dssp EEEE-SS--EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEETTE----EEEEEEEEESTT--T--T--SGG--S--
T ss_pred EEEECCC-EEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCCCc----ceEEEEcccccCccc--c--CCC--ccc
Confidence 6899986 899999999999999752 11122222221100 000112222222111 1 111 556
Q ss_pred CeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeC-CCcEEEEEEEEeCCCCeEEEe
Q 025274 98 SWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAA-DGNLALISRIRNINCKPFSFS 168 (255)
Q Consensus 98 ~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~-~~~L~i~~~V~N~g~~~~pf~ 168 (255)
.|++...+... .+.++...|+|+....+ .+.++.+|+|.+ +-.+.++++++|.++.+....
T Consensus 71 ~f~~~~~~~~l--~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~~~~~~~~~ 132 (270)
T PF14849_consen 71 YFSVSQKSYTL--KEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNLSDQPVSLS 132 (270)
T ss_dssp B-B-S-SEEE----TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE--SSS-EEEE
T ss_pred eEEEcCCceee--ccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECCCCCccccc
Confidence 68776631000 01123667888887542 258999999984 356888888899988876654
No 24
>PRK01318 membrane protein insertase; Provisional
Probab=88.99 E-value=17 Score=35.83 Aligned_cols=122 Identities=14% Similarity=0.160 Sum_probs=66.9
Q ss_pred EEEEECCCceEEEEecCCcEEEEEEeCC-----C--eEEEecCCccccCCCCcccCCcceeccccCCCCC--CCCceeec
Q 025274 25 QVVLRNPRGASAKISLHGGQALSWRTER-----G--EELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGS--LEQHGFAR 95 (255)
Q Consensus 25 ~v~L~~~~~~~a~V~~~GA~v~s~~~~~-----g--~e~L~~~~~a~~~~~~~irgGiPv~fP~fg~~~~--~~~HGfaR 95 (255)
.++++++. .+++|+..||.|.++.-.+ + .++-..++... ...+.-+=|.|..++ ...++
T Consensus 40 ~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~~--------~~y~~~~g~~~~~~~~~~~~~~--- 107 (521)
T PRK01318 40 RITVETDV-LRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPSTE--------HPYFAQSGLTGADGPDNVPNPD--- 107 (521)
T ss_pred EEEEEcCc-EEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCCC--------cceeeeeccccCCCcccccCCC---
Confidence 78999986 8999999999999987531 1 12222222110 001111111211110 11122
Q ss_pred ccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCC-CcEEEEEEEEeCCCCeEEEe
Q 025274 96 NRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAAD-GNLALISRIRNINCKPFSFS 168 (255)
Q Consensus 96 ~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~-~~L~i~~~V~N~g~~~~pf~ 168 (255)
+..|+........ .+.++...|+|++.... ...++.+|++.++ -.++++++|+|.++.++...
T Consensus 108 ~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~--------g~~~~k~yt~~~~~Y~~~~~~~v~n~~~~~~~~~ 171 (521)
T PRK01318 108 RTLYTADGDSLVL--ADGQNELPVTLTWTNGN--------GLTFTKTYTLDRGDYMFTVEYSVNNNSGAPVNLS 171 (521)
T ss_pred Ccceeecccceee--ccCCCceEEEEEEECCC--------CeEEEEEEEEcCCceEEEEEEEEEcCCCCceeee
Confidence 3468776322100 01123556777775421 3678889999753 34888899999988766553
No 25
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=82.49 E-value=37 Score=30.56 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=66.4
Q ss_pred cCCCeeEEEEECCCceEEEEecC-CcEEEEEEeC-CCeE---EEecCCccccCCC-----CcccCCcc------------
Q 025274 19 DRNGIEQVVLRNPRGASAKISLH-GGQALSWRTE-RGEE---LLFTSTKAIFKPP-----HAVRGGIP------------ 76 (255)
Q Consensus 19 ~~~gl~~v~L~~~~~~~a~V~~~-GA~v~s~~~~-~g~e---~L~~~~~a~~~~~-----~~irgGiP------------ 76 (255)
..+|.+.+.+++.. +.+.|.+. ||+|.+|... ...+ .|-...+++.... ..--.||.
T Consensus 3 d~Dg~~E~~~~~~~-~~~~~~~~~gg~~~E~d~~~~~~N~~~tl~r~~E~Yh~~~~~~~~~~~~~gi~siH~~~~~~~~~ 81 (278)
T PF09095_consen 3 DFDGREEVLLQNES-LNAYFKPAYGGSLFELDVKRSAHNLLDTLTRRPEAYHEKIAAQQEESEGEGIASIHDRVKFKDEE 81 (278)
T ss_dssp SSSSS-EEEEE-SS-EEEEEETTTTTEEEEEEETTTTEETT--------GGG--------------------------HH
T ss_pred CCCCcceEEEECCc-EEEEEeeCCCcEEEEEcccCccccccccccCCCccccchhccccccCCCCCccchhhcccccCcc
Confidence 36788999999986 89999866 9999999863 2333 3433344443321 00011221
Q ss_pred ----eeccccCCCC------------------CCCCceeecccCeEEEecCCCCCCCCCCCceEEEEEeecCccccccCC
Q 025274 77 ----ICFPQFGNRG------------------SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWP 134 (255)
Q Consensus 77 ----v~fP~fg~~~------------------~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P 134 (255)
+.+=|--|.. ....=|---+.+|++.... ..|+|.-... . .+
T Consensus 82 ~~~~l~yD~~~R~sf~Dhf~~~~~tle~~~~~~~~e~gDF~~~~y~~~~~~-----------~~v~f~r~G~---~--~~ 145 (278)
T PF09095_consen 82 LKEDLVYDWYPRRSFIDHFLPPDTTLEDFIQGSFRELGDFANQPYELEVNR-----------DEVTFERDGG---V--EG 145 (278)
T ss_dssp HHTT----SS---EEEEEEE-TT--HHHHHTTTS---BS-SSS--EEEEES-----------SEEEEEEEEE---E--SE
T ss_pred ccccccCCCccCceeEEEecCCCCCHHHHhcCchhhhhhccCCceEEEecC-----------CceEEEEecc---c--cc
Confidence 1111111110 0111222334467776653 1255554422 1 67
Q ss_pred eeEEEEEEEEEeCCCcEEEEEEEEeCCCC--eEEEeeecccc
Q 025274 135 HSFEFRLRVSLAADGNLALISRIRNINCK--PFSFSIAYHTY 174 (255)
Q Consensus 135 ~~f~l~~t~~L~~~~~L~i~~~V~N~g~~--~~pf~~g~HpY 174 (255)
++..++=+|+|.. ++|.++++++ .++. ++-|+.=+|-.
T Consensus 146 ~~~~l~K~y~l~~-~~l~V~Y~l~-~~~~~~~~~f~vEiNla 185 (278)
T PF09095_consen 146 HPITLEKRYRLTK-NGLQVDYRLT-ESPEPISLLFGVEINLA 185 (278)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEE--ESS---EEEEEEEEE-
T ss_pred CceEEEEEEEEcC-CEEEEEEEEE-ECCCCcceEEEEEEeec
Confidence 8899999999998 7999999999 4444 44444444433
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=80.13 E-value=2.4 Score=32.40 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=21.7
Q ss_pred EEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 142 RVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 142 t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
.++|.. ...+.+++|.|+||.|+. .|-|-.|
T Consensus 12 ~IelN~-gr~~~~i~V~NtGDRPIQ--VGSHfHF 42 (106)
T COG0832 12 DIELNA-GRPTVTIEVANTGDRPIQ--VGSHFHF 42 (106)
T ss_pred cEEEeC-CCcceEEEEeecCCCceE--eecceee
Confidence 456665 567888889999999555 5555555
No 27
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=75.07 E-value=3.9 Score=31.25 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEeCCCcEEEEEEEEeCCCCeEEEeeecccccc
Q 025274 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (255)
Q Consensus 143 ~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF~ 176 (255)
++|.. +.=+++++|+|+||. |++.|-|-.|.
T Consensus 12 I~lN~-gr~~~~l~V~N~GDR--PIQVGSH~HF~ 42 (100)
T PF00699_consen 12 IELNA-GRERITLEVTNTGDR--PIQVGSHYHFF 42 (100)
T ss_dssp EETTT-TSEEEEEEEEE-SSS---EEEETTS-GG
T ss_pred EEecC-CCcEEEEEEEeCCCc--ceEEccccCHH
Confidence 45555 567888999999998 55666666663
No 28
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=74.86 E-value=4.6 Score=30.90 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 143 ~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
++|.. +.=+++++|+|+||.| ++.|-|-.|
T Consensus 13 I~ln~-gr~~~~l~V~NtGDRP--IQVGSHyHF 42 (101)
T TIGR00192 13 ITINE-GRKTVSVKVKNTGDRP--IQVGSHFHF 42 (101)
T ss_pred EEeCC-CCcEEEEEEEeCCCcc--eEEccccch
Confidence 45655 4567888999999985 555666655
No 29
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=74.12 E-value=4.7 Score=30.88 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 143 ~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
++|.. +.=+++++|+|+||.| ++.|-|-.|
T Consensus 13 I~lN~-gr~~~~l~V~NtGDRp--IQVGSH~HF 42 (101)
T cd00407 13 IELNA-GREAVTLKVKNTGDRP--IQVGSHYHF 42 (101)
T ss_pred eEeCC-CCCEEEEEEEeCCCcc--eEEccccch
Confidence 45555 4567788999999985 555666665
No 30
>PRK13203 ureB urease subunit beta; Reviewed
Probab=74.08 E-value=4.8 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 143 ~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
+.|.. +.=+++++|+|+||.| ++.|-|-.|
T Consensus 13 I~ln~-gr~~~~l~V~NtGDRP--IQVGSH~HF 42 (102)
T PRK13203 13 IELNA-GRETVTLTVANTGDRP--IQVGSHYHF 42 (102)
T ss_pred EEeCC-CCCEEEEEEEeCCCCc--eEEccccch
Confidence 45555 4466788999999985 555566555
No 31
>PRK13202 ureB urease subunit beta; Reviewed
Probab=70.88 E-value=6.6 Score=30.20 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEeCCCc-EEEEEEEEeCCCCeEEEeeeccccc
Q 025274 143 VSLAADGN-LALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 143 ~~L~~~~~-L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
+.|.. +. =+++++|+|+||.| ++.|-|-.|
T Consensus 13 I~ln~-grr~~~~l~V~NtGDRP--IQVGSHyHF 43 (104)
T PRK13202 13 IEMNA-AALSRLQMRIINAGDRP--VQVGSHVHL 43 (104)
T ss_pred EEeCC-CCCceEEEEEEeCCCCc--eEEccccch
Confidence 45655 32 46788899999985 555666555
No 32
>PRK13201 ureB urease subunit beta; Reviewed
Probab=68.85 E-value=6.9 Score=31.42 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=20.5
Q ss_pred EEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 143 ~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
+.|.. +.=+++++|+|+||.|+. .|-|-.|
T Consensus 13 I~lN~-gr~~~~l~V~NtGDRPIQ--VGSHyHF 42 (136)
T PRK13201 13 VEINN-HHPETVIEVENTGDRPIQ--VGSHFHF 42 (136)
T ss_pred eEeCC-CCCEEEEEEEeCCCcceE--eccccch
Confidence 45555 456788899999998554 5555555
No 33
>PRK13205 ureB urease subunit beta; Reviewed
Probab=67.90 E-value=7.2 Score=32.03 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=20.7
Q ss_pred EEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 143 ~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
+.|.. +.=+++++|+|+||.|+. .|-|-.|
T Consensus 13 IelN~-GR~~i~L~V~NtGDRPIQ--VGSHyHF 42 (162)
T PRK13205 13 LTGNV-GREAKTIEIINTGDRPVQ--IGSHFHF 42 (162)
T ss_pred eEeCC-CCcEEEEEEEeCCCCceE--eccccch
Confidence 45655 456788899999998554 5555554
No 34
>PRK13198 ureB urease subunit beta; Reviewed
Probab=66.91 E-value=7.8 Score=31.85 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=21.9
Q ss_pred EEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 142 RVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 142 t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
.+.|.. +.=+++++|+|+||.|+ +.|-|-.|
T Consensus 40 ~I~lN~-gr~~~~l~V~NtGDRPI--QVGSHyHF 70 (158)
T PRK13198 40 PITFNE-NKPVTKVKVRNTGDRPI--QVGSHFHF 70 (158)
T ss_pred CeEeCC-CCcEEEEEEEeCCCCce--Eeccccch
Confidence 456766 45678899999999855 55555555
No 35
>PRK13204 ureB urease subunit beta; Reviewed
Probab=66.76 E-value=7.9 Score=31.84 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 142 RVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 142 t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
.++|.. +.=.++++|+|+||.|+ +.|-|-.|
T Consensus 35 ~I~lN~-gr~~~~l~V~NtGDRPI--QVGSHyHF 65 (159)
T PRK13204 35 PIEINQ-GRPRTTLTVRNTGDRPI--QIGSHFHF 65 (159)
T ss_pred CeEeCC-CCcEEEEEEEeCCCCce--Eeccccch
Confidence 356665 45678899999999855 55556555
No 36
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=65.29 E-value=17 Score=26.61 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.7
Q ss_pred CCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 133 WPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 133 ~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
-|+.+++..+|.-.. . .+.+++.|.|..+..|.+--+.|-
T Consensus 5 l~~~~~v~~~~~~~~-g--~l~l~l~N~g~~~~~~~v~~~~y~ 44 (89)
T PF05506_consen 5 LPYAPEVTARYDPAT-G--NLRLTLSNPGSAAVTFTVYDNAYG 44 (89)
T ss_pred CCCCCEEEEEEECCC-C--EEEEEEEeCCCCcEEEEEEeCCcC
Confidence 366677777766543 3 455566899999999999887773
No 37
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=57.79 E-value=15 Score=26.80 Aligned_cols=36 Identities=8% Similarity=0.148 Sum_probs=19.5
Q ss_pred cEEEEEEEEeCCCCeEEEeeeccccccCCCcceeEEecCCCC
Q 025274 150 NLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETL 191 (255)
Q Consensus 150 ~L~i~~~V~N~g~~~~pf~~g~HpYF~v~d~~~~~v~gl~g~ 191 (255)
++.+.++|+|.++++..+.. +-+-.-++.|...+|.
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f------~sgq~~D~~v~d~~g~ 36 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQF------PSGQRYDFVVKDKEGK 36 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEE------SSS--EEEEEE-TT--
T ss_pred CEEEEEEEEeCCCCeEEEEe------CCCCEEEEEEECCCCC
Confidence 37889999999999888873 2222335566544443
No 38
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=54.53 E-value=15 Score=31.66 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=26.3
Q ss_pred cCCeeEEE-EEEEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 132 IWPHSFEF-RLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 132 ~~P~~f~l-~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
.+|..+.. .=.+.|.. +.=+++++|+|+||.| ++.|-|-.|
T Consensus 110 l~PGei~~~~~~I~lN~-gr~~~~l~V~NtGDRP--IQVGSHyHF 151 (208)
T PRK13192 110 LYPGEILPGDGEIELNA-GRPAVTLDVTNTGDRP--IQVGSHFHF 151 (208)
T ss_pred cCCCEEEcCCCCeeeCC-CCCEEEEEEEeCCCCc--eeeccccch
Confidence 45665432 12356665 4567888999999985 555666555
No 39
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=52.75 E-value=18 Score=33.96 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=22.8
Q ss_pred EEEEEEEeCCCcEEEEEEEEeCCCCeEEEe
Q 025274 139 FRLRVSLAADGNLALISRIRNINCKPFSFS 168 (255)
Q Consensus 139 l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~ 168 (255)
...+|.+-+ .+|+++++|+|+|++|..++
T Consensus 254 ~~A~Y~vpg-R~l~~~l~VtN~g~~pv~Lg 282 (381)
T PF04744_consen 254 TDATYRVPG-RTLTMTLTVTNNGDSPVRLG 282 (381)
T ss_dssp EEEEEESSS-SEEEEEEEEEEESSS-BEEE
T ss_pred eccEEecCC-cEEEEEEEEEcCCCCceEee
Confidence 345677766 78999999999999988765
No 40
>PRK13986 urease subunit alpha; Provisional
Probab=52.26 E-value=16 Score=31.82 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=21.8
Q ss_pred EEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccc
Q 025274 142 RVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (255)
Q Consensus 142 t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF 175 (255)
.+.|.. +.=+++++|+|+||.| ++.|-|-.|
T Consensus 117 ~I~lN~-gr~~~~l~V~NtGDRP--IQVGSHyHF 147 (225)
T PRK13986 117 DITINA-GKKAVSVKVKNVGDRP--VQVGSHFHF 147 (225)
T ss_pred CeecCC-CCcEEEEEEEeCCCCc--eeeccccch
Confidence 356665 4567888999999985 555666555
No 41
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=48.94 E-value=22 Score=33.47 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=22.0
Q ss_pred EEEEEeCCCcEEEEEEEEeCCCCeEEEe
Q 025274 141 LRVSLAADGNLALISRIRNINCKPFSFS 168 (255)
Q Consensus 141 ~t~~L~~~~~L~i~~~V~N~g~~~~pf~ 168 (255)
.+|.+-+ .+|+++++|+|.|++|+.++
T Consensus 275 a~Y~VPG-R~l~~~~~VTN~g~~~vrlg 301 (399)
T TIGR03079 275 ANYDVPG-RALRVTMEITNNGDQVISIG 301 (399)
T ss_pred cEEecCC-cEEEEEEEEEcCCCCceEEE
Confidence 4567755 78999999999999988654
No 42
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=42.90 E-value=10 Score=26.25 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=17.2
Q ss_pred EEEecCCccccCCCCcccCCcceeccc
Q 025274 55 ELLFTSTKAIFKPPHAVRGGIPICFPQ 81 (255)
Q Consensus 55 e~L~~~~~a~~~~~~~irgGiPv~fP~ 81 (255)
+.|+......|- ||+.|||++.|-
T Consensus 25 ~~L~c~~~~~aY---pI~dGIPvlL~~ 48 (60)
T COG2835 25 QELICPRCKLAY---PIRDGIPVLLPD 48 (60)
T ss_pred CEEEecccCcee---ecccCccccCch
Confidence 366655544443 899999999985
No 43
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=40.60 E-value=1.5e+02 Score=25.32 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=34.5
Q ss_pred ceEEEEEeecCccccccCCeeEEE-EEEEEEeCCCcEEEEEEEEeCCCCeEEEee
Q 025274 116 KVYVDLLLKPSEEDLKIWPHSFEF-RLRVSLAADGNLALISRIRNINCKPFSFSI 169 (255)
Q Consensus 116 ~~~v~l~l~~~~~~~~~~P~~f~l-~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~ 169 (255)
...|+.++..+ ...+-|+.|+- +-.+++..+..-.+.+.++|.+++++.-..
T Consensus 62 ~R~I~V~F~a~--~~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A 114 (188)
T PRK05089 62 SRTITVEFDAN--VNGGLPWEFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQA 114 (188)
T ss_pred CcEEEEEEecc--CCCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEE
Confidence 45677777654 34567888863 333444443457778999999999987654
No 44
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=36.52 E-value=2.6e+02 Score=23.50 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=37.0
Q ss_pred cCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccccCCCccee-EEecC
Q 025274 132 IWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEV-RIEGL 188 (255)
Q Consensus 132 ~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF~v~d~~~~-~v~gl 188 (255)
.-.....++-+-.|.+ + +.-+++++|.+.+|..+.+.+.-- .|..++ .|+|.
T Consensus 76 ~~~~~l~l~R~r~v~~-~-~~E~l~l~N~~~~pv~~~l~l~~~---aDFaDiFEVRg~ 128 (194)
T PF14742_consen 76 IPDGTLHLRRERFVGG-G-LYERLTLTNYSPEPVELTLSLEFD---ADFADIFEVRGG 128 (194)
T ss_pred cCCCeEEEEEEEEECC-C-CEEEEEEEeCCCCCEEEEEEEEEE---CCchhhHhhcCC
Confidence 4556777888878876 5 999999999999998888776533 244443 45554
No 45
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=36.51 E-value=3.1e+02 Score=24.42 Aligned_cols=151 Identities=18% Similarity=0.181 Sum_probs=70.1
Q ss_pred EECCCceEEEEecCCcEEEEEEeCCCeEEEecCC-ccccCCCC-cccCCc-ce-eccccCCCCCCCCcee-ecccCeEEE
Q 025274 28 LRNPRGASAKISLHGGQALSWRTERGEELLFTST-KAIFKPPH-AVRGGI-PI-CFPQFGNRGSLEQHGF-ARNRSWVID 102 (255)
Q Consensus 28 L~~~~~~~a~V~~~GA~v~s~~~~~g~e~L~~~~-~a~~~~~~-~irgGi-Pv-~fP~fg~~~~~~~HGf-aR~~~W~v~ 102 (255)
|+... .++++...-|.|.||+. +|+++|-... ...|.... --+|+. +. +-.|-.. ..+=. .+...+.+.
T Consensus 2 V~g~~-f~~~Fdk~~G~l~s~~~-~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~a----g~~~~~~~~~~~~~~ 75 (276)
T PF02929_consen 2 VSGKD-FSYVFDKKTGTLTSYKY-NGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKDA----GLDRLVTRVRSVKVE 75 (276)
T ss_dssp EEETT-EEEEEETTTTCEEEEEE-TTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHHT----TTTCEEEEEEEEEEE
T ss_pred CccCC-EEEEEECCCCeEEEEEE-CCEEeecCCCcccEEeCCCCCccccccchhHHHHHHc----CccceeeEEeEEEEE
Confidence 55554 88889988889999997 5777775332 22232110 001111 00 0012111 11111 122234444
Q ss_pred ecCCCCCCCCCCCceEEEEEeecCccccccCCeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEeeeccccccCCCcce
Q 025274 103 DNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISE 182 (255)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF~v~d~~~ 182 (255)
+.. ++....++..+.... =+..|.+.++|++..+++|+++++++-.++-|..--+|+.--+. .+..+
T Consensus 76 ~~~-------~~~~v~v~~~~~~~~-----~~~~~~~~~~y~i~~dG~i~v~~~~~~~~~~p~lpRiGl~~~Lp-~~~~~ 142 (276)
T PF02929_consen 76 ESD-------GDVAVTVTARYAAPN-----KSWNFEVTITYTIYADGTIKVDMTFEPSGDLPELPRIGLQFQLP-KSFDN 142 (276)
T ss_dssp EEE-------SESEEEEEEEEEETT-----CCEEEEEEEEEEEETTSEEEEEEEEEEETTSSC-SEEEEEEEEE-TTEEE
T ss_pred ecC-------CCceEEEEEEEeCCC-----cceEEEEEEEEEEcCCCEEEEEEEEEeCCCCCCccceEEEEEec-Cccee
Confidence 432 111223333333321 12238889999998877899988887666543332333332221 13455
Q ss_pred eEEecC-CCCcccccc
Q 025274 183 VRIEGL-ETLDYLDNL 197 (255)
Q Consensus 183 ~~v~gl-~g~~y~D~~ 197 (255)
++--|. +.-+|.|..
T Consensus 143 v~wyGrGP~EnY~DRk 158 (276)
T PF02929_consen 143 VEWYGRGPHENYPDRK 158 (276)
T ss_dssp EEEEEEESS--BTTB-
T ss_pred EEEECCCCCCCCcccc
Confidence 655443 245777753
No 46
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=34.73 E-value=1.3e+02 Score=22.95 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=17.8
Q ss_pred EEEEEEEEEeCCCcEEE-EEEEEeCCCCeEEEee
Q 025274 137 FEFRLRVSLAADGNLAL-ISRIRNINCKPFSFSI 169 (255)
Q Consensus 137 f~l~~t~~L~~~~~L~i-~~~V~N~g~~~~pf~~ 169 (255)
++.++++.+..+..+++ .++++|+++++..+++
T Consensus 50 i~~~~~v~V~~~~~vEi~~l~l~N~~~~~r~L~v 83 (110)
T PF06165_consen 50 IETELTVFVPPDDPVEIRRLRLTNTSNRPRRLSV 83 (110)
T ss_dssp EEEEEEEE--TTSSEEEEEEEEEE-SSS-EEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEEEEEECcCCcEEEEE
Confidence 44555555554444555 4778999988765543
No 47
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=34.01 E-value=99 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=26.6
Q ss_pred eCCCcEEEEEEEEeCCCCeEEEeeeccccccC
Q 025274 146 AADGNLALISRIRNINCKPFSFSIAYHTYFAI 177 (255)
Q Consensus 146 ~~~~~L~i~~~V~N~g~~~~pf~~g~HpYF~v 177 (255)
..+..-++++.|+|.+++++.|....++...-
T Consensus 24 ~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn 55 (121)
T PF06030_consen 24 KPGQKQTLEVRITNNSDKEITVKVSANTATTN 55 (121)
T ss_pred CCCCEEEEEEEEEeCCCCCEEEEEEEeeeEec
Confidence 44466888889999999999999998888753
No 48
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=31.45 E-value=2.4e+02 Score=24.90 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=34.2
Q ss_pred ceEEEEEeecCccccccCCeeEEE-EEEEEEeCCCcEEEEEEEEeCCCCeEEEeee
Q 025274 116 KVYVDLLLKPSEEDLKIWPHSFEF-RLRVSLAADGNLALISRIRNINCKPFSFSIA 170 (255)
Q Consensus 116 ~~~v~l~l~~~~~~~~~~P~~f~l-~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~g 170 (255)
.-.|++++..+- ..+-|+.|+- +-.+++..+..-.+.++++|.+++++.-...
T Consensus 106 ~R~I~V~F~a~v--~~~lpW~F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ 159 (232)
T PTZ00128 106 KRLIKIRFLADT--GSTMPWEFEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVAT 159 (232)
T ss_pred ceEEEEEEeccC--CCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEe
Confidence 456777776432 3456777763 3334444434567789999999999876543
No 49
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=30.57 E-value=1.5e+02 Score=24.47 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=27.3
Q ss_pred ceEEEEEeecCccccccCCeeEEEE-EEEEEeCCCcEEEEEEEEeCCCCeEEEe
Q 025274 116 KVYVDLLLKPSEEDLKIWPHSFEFR-LRVSLAADGNLALISRIRNINCKPFSFS 168 (255)
Q Consensus 116 ~~~v~l~l~~~~~~~~~~P~~f~l~-~t~~L~~~~~L~i~~~V~N~g~~~~pf~ 168 (255)
...|++++..+ ...+-|+.|+-. -.+++..+..-.+.+.++|.+++++.-.
T Consensus 35 ~R~i~V~F~a~--~~~~lpW~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~ 86 (152)
T PF04442_consen 35 SRTITVRFDAN--VNPGLPWEFKPEQRSVKVHPGETALVFYEATNPSDKPITGQ 86 (152)
T ss_dssp S-EEEEEEEEE--E-TTS-EEEE-S-SEEEEETT--EEEEEEEEE-SSS-EE--
T ss_pred CcEEEEEEEee--cCCCCceEEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEE
Confidence 45567777653 345678888732 2334444345777899999999987643
No 50
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=30.24 E-value=1.6e+02 Score=21.44 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=23.4
Q ss_pred CeeEEEEEEEEEeCCCcEEEEEEEEeCCCCeEEEee
Q 025274 134 PHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSI 169 (255)
Q Consensus 134 P~~f~l~~t~~L~~~~~L~i~~~V~N~g~~~~pf~~ 169 (255)
|+-.++.+=+.|..++++.+.++|.|..++++.+..
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEE
Confidence 555666666666666788888888898888777654
No 51
>PRK11827 hypothetical protein; Provisional
Probab=28.30 E-value=23 Score=24.56 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=12.2
Q ss_pred CcccCCcceeccccC
Q 025274 69 HAVRGGIPICFPQFG 83 (255)
Q Consensus 69 ~~irgGiPv~fP~fg 83 (255)
-|||-||||+.|-=+
T Consensus 36 YPI~dgIPVlL~deA 50 (60)
T PRK11827 36 FPLRDGIPVLLETEA 50 (60)
T ss_pred ccccCCccccCHHHh
Confidence 489999999998643
No 52
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=24.60 E-value=94 Score=23.35 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=16.0
Q ss_pred cEEEEEEEEeCCCCeEEEeee
Q 025274 150 NLALISRIRNINCKPFSFSIA 170 (255)
Q Consensus 150 ~L~i~~~V~N~g~~~~pf~~g 170 (255)
-+.++++|+|.++++..+...
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~ 57 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPS 57 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGG
T ss_pred EEEEEEEEEECCCCcEEeccc
Confidence 488889999999999988755
No 53
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=23.40 E-value=76 Score=20.13 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=10.7
Q ss_pred EEEEeCCCCeEEEe
Q 025274 155 SRIRNINCKPFSFS 168 (255)
Q Consensus 155 ~~V~N~g~~~~pf~ 168 (255)
++++|+|++++.+.
T Consensus 2 F~~~N~g~~~L~I~ 15 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT 15 (45)
T ss_pred EEEEECCCCcEEEE
Confidence 56789999887664
No 54
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=22.94 E-value=1.1e+02 Score=22.14 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=23.6
Q ss_pred CcEEEEEEEEeCCCCeEEE-eeeccccccCCCcc
Q 025274 149 GNLALISRIRNINCKPFSF-SIAYHTYFAISDIS 181 (255)
Q Consensus 149 ~~L~i~~~V~N~g~~~~pf-~~g~HpYF~v~d~~ 181 (255)
+.+.+.+.|+|+|..+.+. .+-++=||..++..
T Consensus 13 n~i~~~~~i~Ntg~~~i~Ls~l~iRYyft~d~~~ 46 (86)
T PF00942_consen 13 NSIEPKFKIKNTGWPAIDLSDLKIRYYFTIDEVS 46 (86)
T ss_dssp SEEEEEEEEEETSSS-EEGGGEEEEEEEE-SSCC
T ss_pred CEEEEEEEEEECCCCCEEcCCEEEEEEEecCCCc
Confidence 5688889999988888777 56677777777533
No 55
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=21.88 E-value=1.9e+02 Score=21.93 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=18.7
Q ss_pred EEEeCCCcEEEEEEEEeCCCCeEEEeeec
Q 025274 143 VSLAADGNLALISRIRNINCKPFSFSIAY 171 (255)
Q Consensus 143 ~~L~~~~~L~i~~~V~N~g~~~~pf~~g~ 171 (255)
+.+.+ +.=..+++|+|++++++.+..-.
T Consensus 9 ii~~~-~~~~~~i~v~N~~~~~~~vq~~v 36 (122)
T PF00345_consen 9 IIFNE-SQRSASITVTNNSDQPYLVQVWV 36 (122)
T ss_dssp EEEET-TSSEEEEEEEESSSSEEEEEEEE
T ss_pred EEEeC-CCCEEEEEEEcCCCCcEEEEEEE
Confidence 34444 23366778899999888876554
Done!